Start: 2023-07-05 18:21:35 GMT [buster] Package: r-bioc-tfbstools Version: 1.20.0+dfsg-1 Installed-Size: 1741 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools (>= 1.17.1), r-bioc-cner (>= 1.4.0), r-bioc-dirichletmultinomial (>= 1.10.0), r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo (>= 1.34.0), r-bioc-s4vectors (>= 0.9.25), r-cran-tfmpvalue (>= 0.0.5), r-cran-xml (>= 3.98-1.3), r-bioc-xvector (>= 0.8.0), libc6 (>= 2.4) Suggests: r-cran-knitr (>= 1.11), r-cran-testthat Description: GNU R Transcription Factor Binding Site (TFBS) Analysis Homepage: https://bioconductor.org/packages/TFBSTools/ Description-md5: 50e2d45d8eaf57895dd9d09ce4967d52 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-tfbstools/r-bioc-tfbstools_1.20.0+dfsg-1_amd64.deb Size: 896492 MD5sum: 42d8462d42d6475458b876bf26733ff9 SHA256: 483723c40993c9d58909c2ce2db7810f0ca9361778dfc5a64f159f826b550627 [buster-next] Package: r-bioc-tfbstools Version: 1.20.0+dfsg-1 Installed-Size: 1741 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools (>= 1.17.1), r-bioc-cner (>= 1.4.0), r-bioc-dirichletmultinomial (>= 1.10.0), r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo (>= 1.34.0), r-bioc-s4vectors (>= 0.9.25), r-cran-tfmpvalue (>= 0.0.5), r-cran-xml (>= 3.98-1.3), r-bioc-xvector (>= 0.8.0), libc6 (>= 2.4) Suggests: r-cran-knitr (>= 1.11), r-cran-testthat Description: GNU R Transcription Factor Binding Site (TFBS) Analysis Homepage: https://bioconductor.org/packages/TFBSTools/ Description-md5: 50e2d45d8eaf57895dd9d09ce4967d52 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-tfbstools/r-bioc-tfbstools_1.20.0+dfsg-1_amd64.deb Size: 896492 MD5sum: 42d8462d42d6475458b876bf26733ff9 SHA256: 483723c40993c9d58909c2ce2db7810f0ca9361778dfc5a64f159f826b550627 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt r-bioc-tfbstools=1.20.0+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt r-bioc-tfbstools=1.20.0+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpotxu4h14 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpotxu4h14 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpotxu4h14/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', 'update'] 0m3.3s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s INFO: Running scripts post_setup 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat 0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 0m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 0m5.8s INFO: Running scripts is_testable 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s INFO: Running scripts pre_test 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_test_root_password'] 0m5.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_test_root_password'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-tfbstools'] 0m6.1s DUMP: Package: r-bioc-tfbstools Version: 1.20.0+dfsg-1 Installed-Size: 1741 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools (>= 1.17.1), r-bioc-cner (>= 1.4.0), r-bioc-dirichletmultinomial (>= 1.10.0), r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo (>= 1.34.0), r-bioc-s4vectors (>= 0.9.25), r-cran-tfmpvalue (>= 0.0.5), r-cran-xml (>= 3.98-1.3), r-bioc-xvector (>= 0.8.0), libc6 (>= 2.4) Suggests: r-cran-knitr (>= 1.11), r-cran-testthat Description-en: GNU R Transcription Factor Binding Site (TFBS) Analysis TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software. Description-md5: 50e2d45d8eaf57895dd9d09ce4967d52 Homepage: https://bioconductor.org/packages/TFBSTools/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-tfbstools/r-bioc-tfbstools_1.20.0+dfsg-1_amd64.deb Size: 896492 MD5sum: 42d8462d42d6475458b876bf26733ff9 SHA256: 483723c40993c9d58909c2ce2db7810f0ca9361778dfc5a64f159f826b550627 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-tfbstools'] 0m6.1s INFO: apt-cache knows about the following packages: r-bioc-tfbstools 0m6.1s INFO: Running scripts pre_install 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_database-server'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_database-server'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy'] 0m6.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy', 'r-bioc-tfbstools'] 0m6.3s DUMP: r-bioc-tfbstools: Installed: (none) Candidate: 1.20.0+dfsg-1 Version table: 1.20.0+dfsg-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy', 'r-bioc-tfbstools'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-y', 'install', 'r-bioc-tfbstools'] 1m5.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core libblas3 libbsd0 libc-dev-bin libc6-dev libcairo2 libcurl4 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgsl23 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libice6 libicu63 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 linux-libc-dev littler lsb-base openssl r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-seqlogo r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-catools r-cran-cli r-cran-clipr r-cran-colorspace r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-fansi r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools r-cran-hms r-cran-httr r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-powerlaw r-cran-prettyunits r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue r-cran-tibble r-cran-utf8 r-cran-vgam r-cran-viridislite r-cran-withr r-cran-xml r-cran-xtable readline-common sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: glibc-doc manpages-dev gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user tcl8.6 tk8.6 ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-genefilter r-cran-runit r-bioc-graph r-cran-knitr r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-data.table r-bioc-genomicfeatures r-cran-biocmanager r-bioc-gviz r-cran-rmarkdown r-cran-testthat r-bioc-annotationhub r-bioc-limma libgdal-dev r-cran-rpart r-cran-webshot r-cran-rstudioapi r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-viridis r-cran-rmysql r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-sf r-cran-svglite r-cran-forcats r-cran-lubridate r-cran-httpuv r-cran-xml2 r-cran-getopt r-cran-base64enc r-cran-doparallel r-cran-iterators r-cran-inline r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-htmltools r-cran-spdep r-cran-plm r-cran-zoo r-cran-survival readline-doc Recommended packages: manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules r-recommended r-base-dev r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-biovizbase r-bioc-genefilter r-bioc-shortread r-cran-testthat r-cran-mockery r-cran-httpuv r-cran-webutils r-cran-testit r-cran-codetools r-cran-survival r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-lubridate r-cran-domc r-cran-abind r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-knitr r-cran-dplyr r-cran-mockr libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core libblas3 libbsd0 libc-dev-bin libc6-dev libcairo2 libcurl4 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgsl23 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libice6 libicu63 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 linux-libc-dev littler lsb-base openssl r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-seqlogo r-bioc-summarizedexperiment r-bioc-tfbstools r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-catools r-cran-cli r-cran-clipr r-cran-colorspace r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-fansi r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools r-cran-hms r-cran-httr r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-powerlaw r-cran-prettyunits r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue r-cran-tibble r-cran-utf8 r-cran-vgam r-cran-viridislite r-cran-withr r-cran-xml r-cran-xtable readline-common sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 205 MB of archives. After this operation, 477 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:2 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:3 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:5 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:6 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:8 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:10 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:11 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:13 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:19 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:41 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:43 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libgslcblas0 amd64 2.5+dfsg-6 [101 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libgsl23 amd64 2.5+dfsg-6 [880 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:54 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:55 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:60 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:71 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:78 http://deb.debian.org/debian buster/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:79 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:80 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get:81 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get:82 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get:83 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get:84 http://deb.debian.org/debian buster/main amd64 r-bioc-biocgenerics all 0.28.0-2 [644 kB] Get:85 http://deb.debian.org/debian buster/main amd64 r-bioc-biobase amd64 2.42.0-1 [2216 kB] Get:86 http://deb.debian.org/debian buster/main amd64 r-bioc-s4vectors amd64 0.20.1-2 [1815 kB] Get:87 http://deb.debian.org/debian buster/main amd64 r-bioc-iranges amd64 2.16.0-1 [2130 kB] Get:88 http://deb.debian.org/debian buster/main amd64 r-cran-dbi all 1.0.0-2 [789 kB] Get:89 http://deb.debian.org/debian buster/main amd64 r-cran-bit amd64 1.1-14-1+b1 [221 kB] Get:90 http://deb.debian.org/debian buster/main amd64 r-cran-bit64 amd64 0.9-7-3 [438 kB] Get:91 http://deb.debian.org/debian buster/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get:92 http://deb.debian.org/debian buster/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get:93 http://deb.debian.org/debian buster/main amd64 r-cran-prettyunits all 1.0.2-3 [32.4 kB] Get:94 http://deb.debian.org/debian buster/main amd64 r-cran-blob all 1.1.1-2 [25.0 kB] Get:95 http://deb.debian.org/debian buster/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get:96 http://deb.debian.org/debian buster/main amd64 r-cran-memoise all 1.1.0-2 [38.6 kB] Get:97 http://deb.debian.org/debian buster/main amd64 r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get:98 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get:99 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get:100 http://deb.debian.org/debian buster/main amd64 r-cran-rsqlite amd64 2.1.1-2+b1 [858 kB] Get:101 http://deb.debian.org/debian buster/main amd64 r-bioc-annotationdbi all 1.44.0-1 [4629 kB] Get:102 http://deb.debian.org/debian buster/main amd64 r-cran-xml amd64 3.98-1.17-1 [1947 kB] Get:103 http://deb.debian.org/debian buster/main amd64 r-cran-xtable all 1:1.8-3-1 [737 kB] Get:104 http://deb.debian.org/debian buster/main amd64 r-cran-bitops amd64 1.0-6-4 [24.3 kB] Get:105 http://deb.debian.org/debian buster/main amd64 r-cran-rcurl amd64 1.95-4.11-1 [715 kB] Get:106 http://deb.debian.org/debian buster/main amd64 r-bioc-annotate all 1.60.0+dfsg-1 [2102 kB] Get:107 http://deb.debian.org/debian buster/main amd64 r-cran-formatr all 1.5-3 [149 kB] Get:108 http://deb.debian.org/debian buster/main amd64 r-cran-lambda.r all 1.2.3-2 [117 kB] Get:109 http://deb.debian.org/debian buster/main amd64 r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:110 http://deb.debian.org/debian buster/main amd64 r-cran-futile.logger all 1.4.3-3 [102 kB] Get:111 http://deb.debian.org/debian buster/main amd64 r-cran-snow all 1:0.4.3-1 [108 kB] Get:112 http://deb.debian.org/debian buster/main amd64 r-bioc-biocparallel amd64 1.16.6-1 [1063 kB] Get:113 http://deb.debian.org/debian buster/main amd64 r-bioc-xvector amd64 0.22.0-1 [603 kB] Get:114 http://deb.debian.org/debian buster/main amd64 r-bioc-biostrings amd64 2.50.2-1 [14.1 MB] Get:115 http://deb.debian.org/debian buster/main amd64 r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB] Get:116 http://deb.debian.org/debian buster/main amd64 r-bioc-genomeinfodb all 1.18.1-1 [3692 kB] Get:117 http://deb.debian.org/debian buster/main amd64 r-bioc-genomicranges amd64 1.34.0+dfsg-1 [1769 kB] Get:118 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1+deb10u1 [210 kB] Get:119 http://deb.debian.org/debian buster/main amd64 r-bioc-zlibbioc all 1.28.0+dfsg-1 [8540 B] Get:120 http://deb.debian.org/debian buster/main amd64 r-bioc-rsamtools amd64 1.34.1-1 [3531 kB] Get:121 http://deb.debian.org/debian buster/main amd64 r-cran-matrixstats amd64 0.54.0-1 [618 kB] Get:122 http://deb.debian.org/debian buster/main amd64 r-bioc-delayedarray amd64 0.8.0+dfsg-2 [1286 kB] Get:123 http://deb.debian.org/debian buster/main amd64 r-cran-lattice amd64 0.20-38-1 [1121 kB] Get:124 http://deb.debian.org/debian buster/main amd64 r-cran-matrix amd64 1.2-15-1 [3421 kB] Get:125 http://deb.debian.org/debian buster/main amd64 r-bioc-summarizedexperiment all 1.12.0+dfsg-1 [1886 kB] Get:126 http://deb.debian.org/debian buster/main amd64 r-bioc-genomicalignments amd64 1.18.1-1 [2102 kB] Get:127 http://deb.debian.org/debian buster/main amd64 r-bioc-rtracklayer amd64 1.42.1-2 [2440 kB] Get:128 http://deb.debian.org/debian buster/main amd64 r-bioc-bsgenome all 1.50.0-1 [6995 kB] Get:129 http://deb.debian.org/debian buster/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get:130 http://deb.debian.org/debian buster/main amd64 r-cran-cli all 1.0.1-1 [519 kB] Get:131 http://deb.debian.org/debian buster/main amd64 r-cran-fansi amd64 0.4.0-1 [339 kB] Get:132 http://deb.debian.org/debian buster/main amd64 r-cran-rlang amd64 0.3.1-2 [1083 kB] Get:133 http://deb.debian.org/debian buster/main amd64 r-cran-utf8 amd64 1.1.4-1+b1 [131 kB] Get:134 http://deb.debian.org/debian buster/main amd64 r-cran-pillar all 1.3.1-1 [203 kB] Get:135 http://deb.debian.org/debian buster/main amd64 r-cran-tibble amd64 2.0.1-1 [656 kB] Get:136 http://deb.debian.org/debian buster/main amd64 r-cran-hms all 0.4.2-2 [59.1 kB] Get:137 http://deb.debian.org/debian buster/main amd64 r-cran-r6 all 2.4.0-1 [75.2 kB] Get:138 http://deb.debian.org/debian buster/main amd64 r-cran-clipr all 0.5.0-1 [41.7 kB] Get:139 http://deb.debian.org/debian buster/main amd64 r-cran-readr amd64 1.3.1-1 [703 kB] Get:140 http://deb.debian.org/debian buster/main amd64 r-cran-plyr amd64 1.8.4-2 [813 kB] Get:141 http://deb.debian.org/debian buster/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get:142 http://deb.debian.org/debian buster/main amd64 r-cran-stringi amd64 1.2.4-2 [8702 kB] Get:143 http://deb.debian.org/debian buster/main amd64 r-cran-stringr all 1.4.0-1 [198 kB] Get:144 http://deb.debian.org/debian buster/main amd64 r-cran-reshape2 amd64 1.4.3-2 [114 kB] Get:145 http://deb.debian.org/debian buster/main amd64 r-cran-gtable all 0.2.0-3 [93.6 kB] Get:146 http://deb.debian.org/debian buster/main amd64 r-cran-lazyeval amd64 0.2.1-3 [138 kB] Get:147 http://deb.debian.org/debian buster/main amd64 r-cran-mass amd64 7.3-51.1-1 [1100 kB] Get:148 http://deb.debian.org/debian buster/main amd64 r-cran-nlme amd64 3.1.137-1+b3 [2223 kB] Get:149 http://deb.debian.org/debian buster/main amd64 r-cran-mgcv amd64 1.8-27-1 [2665 kB] Get:150 http://deb.debian.org/debian buster/main amd64 r-cran-labeling all 0.3-3 [61.4 kB] Get:151 http://deb.debian.org/debian buster/main amd64 r-cran-colorspace amd64 1.4-0+dfsg-1 [1580 kB] Get:152 http://deb.debian.org/debian buster/main amd64 r-cran-munsell all 0.5.0-1 [235 kB] Get:153 http://deb.debian.org/debian buster/main amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get:154 http://deb.debian.org/debian buster/main amd64 r-cran-viridislite all 0.3.0-3 [59.2 kB] Get:155 http://deb.debian.org/debian buster/main amd64 r-cran-scales amd64 1.0.0-2 [546 kB] Get:156 http://deb.debian.org/debian buster/main amd64 r-cran-withr all 2.1.2-3 [152 kB] Get:157 http://deb.debian.org/debian buster/main amd64 r-cran-ggplot2 all 3.1.0-1 [3740 kB] Get:158 http://deb.debian.org/debian buster/main amd64 r-cran-vgam amd64 1.0-6-1 [7495 kB] Get:159 http://deb.debian.org/debian buster/main amd64 r-cran-powerlaw all 0.70.2-1 [3341 kB] Get:160 http://deb.debian.org/debian buster/main amd64 r-bioc-go.db all 3.7.0-1 [16.1 MB] Get:161 http://deb.debian.org/debian buster/main amd64 r-cran-r.methodss3 all 1.7.1-3 [77.5 kB] Get:162 http://deb.debian.org/debian buster/main amd64 r-cran-r.oo all 1.22.0-2 [947 kB] Get:163 http://deb.debian.org/debian buster/main amd64 r-cran-r.utils all 2.7.0-1 [1358 kB] Get:164 http://deb.debian.org/debian buster/main amd64 r-cran-curl amd64 3.3+dfsg-1 [128 kB] Get:165 http://deb.debian.org/debian buster/main amd64 r-cran-jsonlite amd64 1.6+dfsg-1 [437 kB] Get:166 http://deb.debian.org/debian buster/main amd64 r-cran-mime amd64 0.6-1 [35.1 kB] Get:167 http://deb.debian.org/debian buster/main amd64 r-cran-sys amd64 2.1-1 [58.7 kB] Get:168 http://deb.debian.org/debian buster/main amd64 r-cran-askpass amd64 1.1-1 [21.9 kB] Get:169 http://deb.debian.org/debian buster/main amd64 r-cran-openssl amd64 1.2.2+dfsg-1 [347 kB] Get:170 http://deb.debian.org/debian buster/main amd64 r-cran-httr all 1.4.0-3 [464 kB] Get:171 http://deb.debian.org/debian buster/main amd64 r-cran-png amd64 0.1-7-3 [40.4 kB] Get:172 http://deb.debian.org/debian buster/main amd64 r-bioc-keggrest all 1.22.0+dfsg-1 [112 kB] Get:173 http://deb.debian.org/debian buster/main amd64 r-bioc-cner amd64 1.18.1+dfsg-1 [8282 kB] Get:174 http://deb.debian.org/debian buster/main amd64 r-bioc-dirichletmultinomial amd64 1.24.1-1 [539 kB] Get:175 http://deb.debian.org/debian buster/main amd64 r-bioc-seqlogo all 1.48.0-1 [352 kB] Get:176 http://deb.debian.org/debian buster/main amd64 r-cran-catools amd64 1.17.1.1-1 [204 kB] Get:177 http://deb.debian.org/debian buster/main amd64 r-cran-gtools amd64 3.8.1-1 [321 kB] Get:178 http://deb.debian.org/debian buster/main amd64 r-cran-tfmpvalue amd64 0.0.8-1 [54.6 kB] Get:179 http://deb.debian.org/debian buster/main amd64 r-bioc-tfbstools amd64 1.20.0+dfsg-1 [896 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 205 MB in 27s (7739 kB/s) Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6462 files and directories currently installed.) Preparing to unpack .../000-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../002-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../003-libssl1.1_1.1.1n-0+deb10u3_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_1.1.1n-0+deb10u3_amd64.deb ... Unpacking openssl (1.1.1n-0+deb10u3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20200601~deb10u2_all.deb ... Unpacking ca-certificates (20200601~deb10u2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../006-libexpat1_2.2.6-2+deb10u4_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u4) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../007-libpng16-16_1.6.36-6_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.36-6) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../008-libfreetype6_2.9.1-3+deb10u3_amd64.deb ... Unpacking libfreetype6:amd64 (2.9.1-3+deb10u3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../009-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../010-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../011-libfontconfig1_2.13.1-2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../012-fontconfig_2.13.1-2_amd64.deb ... Unpacking fontconfig (2.13.1-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../013-libquadmath0_8.3.0-6_amd64.deb ... Unpacking libquadmath0:amd64 (8.3.0-6) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../014-libgfortran5_8.3.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (8.3.0-6) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../015-libblas3_3.8.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.8.0-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../016-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../017-libc-dev-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-dev-bin (2.28-10+deb10u1) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../018-linux-libc-dev_4.19.249-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.19.249-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../019-libc6-dev_2.28-10+deb10u1_amd64.deb ... Unpacking libc6-dev:amd64 (2.28-10+deb10u1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../020-libpixman-1-0_0.36.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.36.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../021-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../022-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../023-libxcb1_1.13.1-2_amd64.deb ... Unpacking libxcb1:amd64 (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../024-libx11-data_2%3a1.6.7-1+deb10u2_all.deb ... Unpacking libx11-data (2:1.6.7-1+deb10u2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../025-libx11-6_2%3a1.6.7-1+deb10u2_amd64.deb ... 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Setting up r-cran-stringr (1.4.0-1) ... Setting up r-bioc-biocparallel (1.16.6-1) ... Setting up r-bioc-annotationdbi (1.44.0-1) ... Setting up r-bioc-go.db (3.7.0-1) ... Setting up r-cran-munsell (0.5.0-1) ... Setting up r-cran-tibble (2.0.1-1) ... Setting up r-bioc-dirichletmultinomial (1.24.1-1) ... Setting up r-cran-r.oo (1.22.0-2) ... Setting up r-cran-reshape2 (1.4.3-2) ... Setting up r-bioc-genomeinfodb (1.18.1-1) ... Setting up r-cran-httr (1.4.0-3) ... Setting up r-bioc-annotate (1.60.0+dfsg-1) ... Setting up r-cran-readr (1.3.1-1) ... Setting up r-cran-scales (1.0.0-2) ... Setting up r-bioc-xvector (0.22.0-1) ... Setting up r-bioc-delayedarray (0.8.0+dfsg-2) ... Setting up r-cran-r.utils (2.7.0-1) ... Setting up r-cran-ggplot2 (3.1.0-1) ... Setting up r-bioc-genomicranges (1.34.0+dfsg-1) ... Setting up r-bioc-biostrings (2.50.2-1) ... Setting up r-bioc-rsamtools (1.34.1-1) ... Setting up r-bioc-summarizedexperiment (1.12.0+dfsg-1) ... Setting up r-bioc-keggrest (1.22.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.18.1-1) ... Setting up r-bioc-rtracklayer (1.42.1-2) ... Setting up r-bioc-cner (1.18.1+dfsg-1) ... Setting up r-bioc-bsgenome (1.50.0-1) ... Setting up r-bioc-tfbstools (1.20.0+dfsg-1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-y', 'install', 'r-bioc-tfbstools'] 1m5.6s INFO: Running scripts post_install 1m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_install_exceptions'] 1m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_install_exceptions'] 1m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m6.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpotxu4h14 to buster-next 1m6.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main deb http://security.debian.org buster/updates main deb http://deb.debian.org/debian/ buster-updates main deb http://deb.debian.org/debian/ buster-proposed-updates main 1m6.3s INFO: Running scripts pre_distupgrade 1m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_exceptions'] 1m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_exceptions'] 1m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', 'update'] 1m8.4s DUMP: Get:1 http://security.debian.org buster/updates InRelease [34.8 kB] Hit:2 http://deb.debian.org/debian buster InRelease Get:3 http://security.debian.org buster/updates/main amd64 Packages [522 kB] Get:4 http://security.debian.org buster/updates/main Translation-en [282 kB] Get:5 http://deb.debian.org/debian buster-updates InRelease [56.6 kB] Get:6 http://deb.debian.org/debian buster-proposed-updates InRelease [59.2 kB] Get:7 http://deb.debian.org/debian buster-updates/main amd64 Packages [8788 B] Get:8 http://deb.debian.org/debian buster-updates/main Translation-en [6915 B] Get:9 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages [728 B] Get:10 http://deb.debian.org/debian buster-proposed-updates/main Translation-en [859 B] Fetched 972 kB in 1s (995 kB/s) Reading package lists... 1m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', 'update'] 1m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-yf', 'dist-upgrade'] 1m14.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcurl4 libexpat1 libglib2.0-0 libgnutls30 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libncursesw6 libpixman-1-0 libssl1.1 libsystemd0 libtasn1-6 libtiff5 libtinfo6 libudev1 libwebp6 libx11-6 libx11-data libxml2 linux-libc-dev ncurses-base ncurses-bin openssl tzdata unzip zlib1g zlib1g-dev 33 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 MB of archives. After this operation, 249 kB disk space will be freed. Get:1 http://security.debian.org buster/updates/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u3 [407 kB] Get:2 http://security.debian.org buster/updates/main amd64 libc6-dev amd64 2.28-10+deb10u2 [2693 kB] Get:3 http://security.debian.org buster/updates/main amd64 libc-dev-bin amd64 2.28-10+deb10u2 [276 kB] Get:4 http://security.debian.org buster/updates/main amd64 linux-libc-dev amd64 4.19.282-1 [1573 kB] Get:5 http://security.debian.org buster/updates/main amd64 libc6 amd64 2.28-10+deb10u2 [2869 kB] Get:6 http://security.debian.org buster/updates/main amd64 libc-bin amd64 2.28-10+deb10u2 [793 kB] Get:7 http://security.debian.org buster/updates/main amd64 ncurses-base all 6.1+20181013-2+deb10u3 [259 kB] Get:8 http://security.debian.org buster/updates/main amd64 libsystemd0 amd64 241-7~deb10u10 [332 kB] Get:9 http://security.debian.org buster/updates/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1+deb10u2 [210 kB] Get:10 http://security.debian.org buster/updates/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u2 [90.9 kB] Get:11 http://security.debian.org buster/updates/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u2 [45.4 kB] Get:12 http://security.debian.org buster/updates/main amd64 libudev1 amd64 241-7~deb10u10 [151 kB] Get:13 http://security.debian.org buster/updates/main amd64 libtasn1-6 amd64 4.13-3+deb10u1 [52.0 kB] Get:14 http://security.debian.org buster/updates/main amd64 libgnutls30 amd64 3.6.7-4+deb10u10 [1126 kB] Get:15 http://security.debian.org buster/updates/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u3 [326 kB] Get:16 http://security.debian.org buster/updates/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u3 [132 kB] Get:17 http://security.debian.org buster/updates/main amd64 tzdata all 2021a-0+deb10u11 [267 kB] Get:18 http://security.debian.org buster/updates/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u5 [1551 kB] Get:19 http://security.debian.org buster/updates/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u5 [159 kB] Get:20 http://security.debian.org buster/updates/main amd64 libkrb5-3 amd64 1.17-3+deb10u5 [369 kB] Get:21 http://security.debian.org buster/updates/main amd64 libkrb5support0 amd64 1.17-3+deb10u5 [66.0 kB] Get:22 http://security.debian.org buster/updates/main amd64 libk5crypto3 amd64 1.17-3+deb10u5 [122 kB] Get:23 http://security.debian.org buster/updates/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u6 [690 kB] Get:24 http://security.debian.org buster/updates/main amd64 libcurl4 amd64 7.64.0-4+deb10u6 [335 kB] Get:25 http://security.debian.org buster/updates/main amd64 libexpat1 amd64 2.2.6-2+deb10u6 [108 kB] Get:26 http://security.debian.org buster/updates/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u4 [1259 kB] Get:27 http://security.debian.org buster/updates/main amd64 libpixman-1-0 amd64 0.36.0-1+deb10u1 [234 kB] Get:28 http://security.debian.org buster/updates/main amd64 libwebp6 amd64 0.6.1-2+deb10u2 [262 kB] Get:29 http://security.debian.org buster/updates/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u7 [273 kB] Get:30 http://security.debian.org buster/updates/main amd64 libx11-data all 2:1.6.7-1+deb10u3 [299 kB] Get:31 http://security.debian.org buster/updates/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u3 [757 kB] Get:32 http://security.debian.org buster/updates/main amd64 openssl amd64 1.1.1n-0+deb10u5 [855 kB] Get:33 http://security.debian.org buster/updates/main amd64 unzip amd64 6.0-23+deb10u3 [172 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.1 MB in 0s (61.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18561 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking ncurses-bin (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up ncurses-bin (6.1+20181013-2+deb10u3) ... (Reading database ... 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Preparing to unpack .../libc6_2.28-10+deb10u2_amd64.deb ... Unpacking libc6:amd64 (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc6:amd64 (2.28-10+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18561 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u2_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc-bin (2.28-10+deb10u2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18561 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u10_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libsystemd0:amd64 (241-7~deb10u10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18561 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-9.2~deb10u2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) over (1.0.6-9.2~deb10u1) ... Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18561 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u10_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libudev1:amd64 (241-7~deb10u10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18561 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18561 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18561 files and directories currently installed.) Preparing to unpack .../00-tzdata_2021a-0+deb10u11_all.deb ... Unpacking tzdata (2021a-0+deb10u11) over (2021a-0+deb10u6) ... Preparing to unpack .../01-libssl1.1_1.1.1n-0+deb10u5_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1n-0+deb10u5) over (1.1.1n-0+deb10u3) ... Preparing to unpack .../02-libgssapi-krb5-2_1.17-3+deb10u5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-3+deb10u5) over (1.17-3+deb10u4) ... Preparing to unpack .../03-libkrb5-3_1.17-3+deb10u5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-3+deb10u5) over (1.17-3+deb10u4) ... Preparing to unpack .../04-libkrb5support0_1.17-3+deb10u5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-3+deb10u5) over (1.17-3+deb10u4) ... Preparing to unpack .../05-libk5crypto3_1.17-3+deb10u5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-3+deb10u5) over (1.17-3+deb10u4) ... Preparing to unpack .../06-libxml2_2.9.4+dfsg1-7+deb10u6_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u6) over (2.9.4+dfsg1-7+deb10u4) ... Preparing to unpack .../07-libcurl4_7.64.0-4+deb10u6_amd64.deb ... Unpacking libcurl4:amd64 (7.64.0-4+deb10u6) over (7.64.0-4+deb10u2) ... Preparing to unpack .../08-libexpat1_2.2.6-2+deb10u6_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u6) over (2.2.6-2+deb10u4) ... Preparing to unpack .../09-libglib2.0-0_2.58.3-2+deb10u4_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u4) over (2.58.3-2+deb10u3) ... Preparing to unpack .../10-libpixman-1-0_0.36.0-1+deb10u1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.36.0-1+deb10u1) over (0.36.0-1) ... Preparing to unpack .../11-libwebp6_0.6.1-2+deb10u2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2+deb10u2) over (0.6.1-2+deb10u1) ... Preparing to unpack .../12-libtiff5_4.1.0+git191117-2~deb10u7_amd64.deb ... Unpacking libtiff5:amd64 (4.1.0+git191117-2~deb10u7) over (4.1.0+git191117-2~deb10u4) ... Preparing to unpack .../13-libx11-data_2%3a1.6.7-1+deb10u3_all.deb ... Unpacking libx11-data (2:1.6.7-1+deb10u3) over (2:1.6.7-1+deb10u2) ... Preparing to unpack .../14-libx11-6_2%3a1.6.7-1+deb10u3_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.7-1+deb10u3) over (2:1.6.7-1+deb10u2) ... Preparing to unpack .../15-openssl_1.1.1n-0+deb10u5_amd64.deb ... Unpacking openssl (1.1.1n-0+deb10u5) over (1.1.1n-0+deb10u3) ... Preparing to unpack .../16-unzip_6.0-23+deb10u3_amd64.deb ... Unpacking unzip (6.0-23+deb10u3) over (6.0-23+deb10u2) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u6) ... Setting up libpixman-1-0:amd64 (0.36.0-1+deb10u1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u4) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1n-0+deb10u5) ... Setting up unzip (6.0-23+deb10u3) ... Setting up linux-libc-dev:amd64 (4.19.282-1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u5) ... Setting up tzdata (2021a-0+deb10u11) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jul 5 18:22:49 UTC 2023. Universal Time is now: Wed Jul 5 18:22:49 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libx11-data (2:1.6.7-1+deb10u3) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u2) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u5) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u3) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u5) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u7) ... Setting up libc-dev-bin (2.28-10+deb10u2) ... Setting up openssl (1.1.1n-0+deb10u5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u6) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u5) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u6) ... Setting up libc6-dev:amd64 (2.28-10+deb10u2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u2) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 1m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-yf', 'dist-upgrade'] 1m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m14.6s DUMP: 6f75ae48b0907c2ef9e2b072ff7d4963 - 1m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-tfbstools'] 1m14.8s DUMP: Package: r-bioc-tfbstools Version: 1.20.0+dfsg-1 Installed-Size: 1741 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools (>= 1.17.1), r-bioc-cner (>= 1.4.0), r-bioc-dirichletmultinomial (>= 1.10.0), r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo (>= 1.34.0), r-bioc-s4vectors (>= 0.9.25), r-cran-tfmpvalue (>= 0.0.5), r-cran-xml (>= 3.98-1.3), r-bioc-xvector (>= 0.8.0), libc6 (>= 2.4) Suggests: r-cran-knitr (>= 1.11), r-cran-testthat Description-en: GNU R Transcription Factor Binding Site (TFBS) Analysis TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software. Description-md5: 50e2d45d8eaf57895dd9d09ce4967d52 Homepage: https://bioconductor.org/packages/TFBSTools/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-tfbstools/r-bioc-tfbstools_1.20.0+dfsg-1_amd64.deb Size: 896492 MD5sum: 42d8462d42d6475458b876bf26733ff9 SHA256: 483723c40993c9d58909c2ce2db7810f0ca9361778dfc5a64f159f826b550627 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-tfbstools'] 1m14.8s INFO: apt-cache knows about the following packages: r-bioc-tfbstools 1m14.8s INFO: Running scripts pre_install 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_database-server'] 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_database-server'] 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_exceptions'] 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_exceptions'] 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_extras'] 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_extras'] 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture'] 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture'] 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy'] 1m14.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy'] 1m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy', 'r-bioc-tfbstools'] 1m15.0s DUMP: r-bioc-tfbstools: Installed: 1.20.0+dfsg-1 Candidate: 1.20.0+dfsg-1 Version table: *** 1.20.0+dfsg-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy', 'r-bioc-tfbstools'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-y', 'install', 'r-bioc-tfbstools'] 1m15.6s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-tfbstools is already the newest version (1.20.0+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-y', 'install', 'r-bioc-tfbstools'] 1m15.6s INFO: Running scripts post_install 1m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_install_exceptions'] 1m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_install_exceptions'] 1m15.6s INFO: Running scripts post_distupgrade 1m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_exceptions'] 1m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_exceptions'] 1m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_zz_backports'] 1m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_distupgrade_zz_backports'] 1m15.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m16.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m16.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m17.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m17.0s INFO: Running scripts pre_install 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_database-server'] 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_database-server'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_exceptions'] 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_exceptions'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_extras'] 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_extras'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture'] 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy'] 1m17.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy'] 1m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy', 'r-bioc-tfbstools'] 1m17.2s DUMP: r-bioc-tfbstools: Installed: 1.20.0+dfsg-1 Candidate: 1.20.0+dfsg-1 Version table: *** 1.20.0+dfsg-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-cache', 'policy', 'r-bioc-tfbstools'] 1m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-y', 'install', 'r-bioc-tfbstools=1.20.0+dfsg-1'] 1m17.7s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-tfbstools is already the newest version (1.20.0+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', '-y', 'install', 'r-bioc-tfbstools=1.20.0+dfsg-1'] 1m17.7s INFO: Running scripts post_install 1m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_install_exceptions'] 1m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_install_exceptions'] 1m17.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m18.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m19.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', '-ac', '--ignore-obsolete'] 1m22.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', '-ac', '--ignore-obsolete'] 1m22.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m22.1s DUMP: 0.15.6 1m22.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m22.1s INFO: Running adequate version 0.15.6 now. 1m22.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'r-bioc-tfbstools'] 1m22.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'r-bioc-tfbstools'] 1m22.2s INFO: Running scripts pre_remove 1m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_exceptions'] 1m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/pre_remove_exceptions'] 1m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m27.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u2 install ok installed libc-bin libc-bin 2.28-10+deb10u2 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u2 install ok installed libc6:amd64 libc6 2.28-10+deb10u2 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u2 install ok installed libcairo2:amd64 libcairo2 1.16.0-4+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u6 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u6 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u4 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u10 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgsl23:amd64 libgsl23 2.5+dfsg-6 install ok installed libgslcblas0:amd64 libgslcblas0 2.5+dfsg-6 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u5 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u3 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1+deb10u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u5 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u10 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3+deb10u1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u7 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u3 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libudev1:amd64 libudev1 241-7~deb10u10 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u2 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u3 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u3 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u6 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.282-1 install ok installed littler littler 0.3.6-1 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u3 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u3 install ok installed openssl openssl 1.1.1n-0+deb10u5 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed r-base-core r-base-core 3.5.2-1 install ok installed r-bioc-annotate r-bioc-annotate 1.60.0+dfsg-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.44.0-1 install ok installed r-bioc-biobase r-bioc-biobase 2.42.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.28.0-2 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.16.6-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.50.2-1 install ok installed r-bioc-bsgenome r-bioc-bsgenome 1.50.0-1 install ok installed r-bioc-cner r-bioc-cner 1.18.1+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.8.0+dfsg-2 install ok installed r-bioc-dirichletmultinomial r-bioc-dirichletmultinomial 1.24.1-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.18.1-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.0-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.18.1-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.34.0+dfsg-1 install ok installed r-bioc-go.db r-bioc-go.db 3.7.0-1 install ok installed r-bioc-iranges r-bioc-iranges 2.16.0-1 install ok installed r-bioc-keggrest r-bioc-keggrest 1.22.0+dfsg-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 1.34.1-1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.42.1-2 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.20.1-2 install ok installed r-bioc-seqlogo r-bioc-seqlogo 1.48.0-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.12.0+dfsg-1 install ok installed r-bioc-tfbstools r-bioc-tfbstools 1.20.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.22.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.28.0+dfsg-1 install ok installed r-cran-askpass r-cran-askpass 1.1-1 install ok installed r-cran-assertthat r-cran-assertthat 0.2.0-2 install ok installed r-cran-bit r-cran-bit 1.1-14-1+b1 install ok installed r-cran-bit64 r-cran-bit64 0.9-7-3 install ok installed r-cran-bitops r-cran-bitops 1.0-6-4 install ok installed r-cran-blob r-cran-blob 1.1.1-2 install ok installed r-cran-catools r-cran-catools 1.17.1.1-1 install ok installed r-cran-cli r-cran-cli 1.0.1-1 install ok installed r-cran-clipr r-cran-clipr 0.5.0-1 install ok installed r-cran-colorspace r-cran-colorspace 1.4-0+dfsg-1 install ok installed r-cran-crayon r-cran-crayon 1.3.4-4 install ok installed r-cran-curl r-cran-curl 3.3+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.0.0-2 install ok installed r-cran-digest r-cran-digest 0.6.18-1 install ok installed r-cran-fansi r-cran-fansi 0.4.0-1 install ok installed r-cran-formatr r-cran-formatr 1.5-3 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-3 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-2 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.1.0-1 install ok installed r-cran-glue r-cran-glue 1.3.0-1 install ok installed r-cran-gtable r-cran-gtable 0.2.0-3 install ok installed r-cran-gtools r-cran-gtools 3.8.1-1 install ok installed r-cran-hms r-cran-hms 0.4.2-2 install ok installed r-cran-httr r-cran-httr 1.4.0-3 install ok installed r-cran-jsonlite r-cran-jsonlite 1.6+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.3-3 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.3-2 install ok installed r-cran-lattice r-cran-lattice 0.20-38-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.1-3 install ok installed r-cran-littler r-cran-littler 0.3.6-1 install ok installed r-cran-magrittr r-cran-magrittr 1.5-5 install ok installed r-cran-mass r-cran-mass 7.3-51.1-1 install ok installed r-cran-matrix r-cran-matrix 1.2-15-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.54.0-1 install ok installed r-cran-memoise r-cran-memoise 1.1.0-2 install ok installed r-cran-mgcv r-cran-mgcv 1.8-27-1 install ok installed r-cran-mime r-cran-mime 0.6-1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-1 install ok installed r-cran-nlme r-cran-nlme 3.1.137-1+b3 install ok installed r-cran-openssl r-cran-openssl 1.2.2+dfsg-1 install ok installed r-cran-pillar r-cran-pillar 1.3.1-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.2-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-2 install ok installed r-cran-plyr r-cran-plyr 1.8.4-2 install ok installed r-cran-png r-cran-png 0.1-7-3 install ok installed r-cran-powerlaw r-cran-powerlaw 0.70.2-1 install ok installed r-cran-prettyunits r-cran-prettyunits 1.0.2-3 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.7.1-3 install ok installed r-cran-r.oo r-cran-r.oo 1.22.0-2 install ok installed r-cran-r.utils r-cran-r.utils 2.7.0-1 install ok installed r-cran-r6 r-cran-r6 2.4.0-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-2 install ok installed r-cran-rcpp r-cran-rcpp 1.0.0-1 install ok installed r-cran-rcurl r-cran-rcurl 1.95-4.11-1 install ok installed r-cran-readr r-cran-readr 1.3.1-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.3-2 install ok installed r-cran-rlang r-cran-rlang 0.3.1-2 install ok installed r-cran-rsqlite r-cran-rsqlite 2.1.1-2+b1 install ok installed r-cran-scales r-cran-scales 1.0.0-2 install ok installed r-cran-snow r-cran-snow 1:0.4.3-1 install ok installed r-cran-stringi r-cran-stringi 1.2.4-2 install ok installed r-cran-stringr r-cran-stringr 1.4.0-1 install ok installed r-cran-sys r-cran-sys 2.1-1 install ok installed r-cran-tfmpvalue r-cran-tfmpvalue 0.0.8-1 install ok installed r-cran-tibble r-cran-tibble 2.0.1-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-1+b1 install ok installed r-cran-vgam r-cran-vgam 1.0-6-1 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-3 install ok installed r-cran-withr r-cran-withr 2.1.2-3 install ok installed r-cran-xml r-cran-xml 3.98-1.17-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-3-1 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u11 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u3 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-utils xdg-utils 1.1.3-1+deb10u1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u2 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-1+deb10u2 1m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu63:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'openssl', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-bsgenome', 'r-bioc-cner', 'r-bioc-delayedarray', 'r-bioc-dirichletmultinomial', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-go.db', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-seqlogo', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-catools', 'r-cran-cli', 'r-cran-clipr', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-digest', 'r-cran-fansi', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hms', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-powerlaw', 'r-cran-prettyunits', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-readr', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tfmpvalue', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vgam', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-tfbstools'] 1m30.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates fontconfig fontconfig-config fonts-dejavu-core libblas3 libbsd0 libc-dev-bin libc6-dev libcairo2 libcurl4 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgsl23 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libice6 libicu63 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 linux-libc-dev littler lsb-base openssl r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-seqlogo r-bioc-summarizedexperiment r-bioc-tfbstools r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-catools r-cran-cli r-cran-clipr r-cran-colorspace r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-fansi r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools r-cran-hms r-cran-httr r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-powerlaw r-cran-prettyunits r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue r-cran-tibble r-cran-utf8 r-cran-vgam r-cran-viridislite r-cran-withr r-cran-xml r-cran-xtable readline-common sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 179 to remove and 0 not upgraded. After this operation, 477 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18563 files and directories currently installed.) Removing r-bioc-tfbstools (1.20.0+dfsg-1) ... Removing r-bioc-cner (1.18.1+dfsg-1) ... Removing r-cran-ggplot2 (3.1.0-1) ... Removing r-cran-mgcv (1.8-27-1) ... Removing r-cran-tfmpvalue (0.0.8-1) ... Removing r-cran-scales (1.0.0-2) ... Removing r-cran-rcolorbrewer (1.1-2-2) ... Removing littler (0.3.6-1) ... Removing r-bioc-bsgenome (1.50.0-1) ... Removing r-bioc-annotate (1.60.0+dfsg-1) ... Removing r-bioc-keggrest (1.22.0+dfsg-1) ... Removing r-cran-httr (1.4.0-3) ... Removing r-cran-curl (3.3+dfsg-1) ... Removing r-cran-powerlaw (0.70.2-1) ... Removing r-cran-vgam (1.0-6-1) ... Removing r-cran-nlme (3.1.137-1+b3) ... Removing r-bioc-dirichletmultinomial (1.24.1-1) ... Removing libgsl23:amd64 (2.5+dfsg-6) ... Removing libgslcblas0:amd64 (2.5+dfsg-6) ... Removing r-cran-png (0.1-7-3) ... Removing r-cran-openssl (1.2.2+dfsg-1) ... Removing r-bioc-go.db (3.7.0-1) ... Removing r-bioc-annotationdbi (1.44.0-1) ... Removing r-bioc-seqlogo (1.48.0-1) ... Removing r-cran-askpass (1.1-1) ... Removing r-cran-rsqlite (2.1.1-2+b1) ... Removing r-cran-blob (1.1.1-2) ... Removing r-cran-prettyunits (1.0.2-3) ... Removing r-cran-readr (1.3.1-1) ... Removing r-cran-tibble (2.0.1-1) ... Removing r-cran-bit64 (0.9-7-3) ... Removing r-cran-bit (1.1-14-1+b1) ... Removing r-cran-catools (1.17.1.1-1) ... Removing r-cran-clipr (0.5.0-1) ... Removing r-cran-munsell (0.5.0-1) ... Removing r-cran-colorspace (1.4-0+dfsg-1) ... Removing r-cran-pillar (1.3.1-1) ... Removing r-cran-dbi (1.0.0-2) ... Removing r-cran-memoise (1.1.0-2) ... Removing r-cran-digest (0.6.18-1) ... Removing r-cran-fansi (0.4.0-1) ... Removing r-cran-reshape2 (1.4.3-2) ... Removing r-cran-stringr (1.4.0-1) ... Removing r-cran-glue (1.3.0-1) ... Removing r-cran-gtable (0.2.0-3) ... Removing r-cran-gtools (3.8.1-1) ... Removing r-cran-hms (0.4.2-2) ... Removing r-cran-jsonlite (1.6+dfsg-1) ... Removing r-cran-labeling (0.3-3) ... Removing r-cran-lazyeval (0.2.1-3) ... Removing r-cran-magrittr (1.5-5) ... Removing r-cran-mass (7.3-51.1-1) ... Removing r-cran-mime (0.6-1) ... Removing r-cran-pkgconfig (2.0.2-1) ... Removing r-cran-plyr (1.8.4-2) ... Removing r-cran-r.utils (2.7.0-1) ... Removing r-cran-r.oo (1.22.0-2) ... Removing r-cran-r.methodss3 (1.7.1-3) ... Removing r-cran-r6 (2.4.0-1) ... Removing r-cran-rlang (0.3.1-2) ... Removing r-cran-stringi (1.2.4-2) ... Removing r-cran-sys (2.1-1) ... Removing r-cran-utf8 (1.1.4-1+b1) ... Removing r-cran-viridislite (0.3.0-3) ... Removing r-cran-withr (2.1.2-3) ... Removing r-cran-xtable (1:1.8-3-1) ... Removing r-bioc-rtracklayer (1.42.1-2) ... Removing r-bioc-genomicalignments (1.18.1-1) ... Removing r-bioc-summarizedexperiment (1.12.0+dfsg-1) ... Removing r-bioc-delayedarray (0.8.0+dfsg-2) ... Removing r-cran-matrix (1.2-15-1) ... Removing r-cran-rcpp (1.0.0-1) ... Removing r-cran-littler (0.3.6-1) ... Removing r-bioc-rsamtools (1.34.1-1) ... Removing r-bioc-zlibbioc (1.28.0+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u2) ... Removing libc6-dev:amd64 (2.28-10+deb10u2) ... Removing libc-dev-bin (2.28-10+deb10u2) ... Removing r-bioc-genomicranges (1.34.0+dfsg-1) ... Removing r-bioc-genomeinfodb (1.18.1-1) ... Removing r-cran-rcurl (1.95-4.11-1) ... Removing r-cran-xml (3.98-1.17-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u6) ... Removing linux-libc-dev:amd64 (4.19.282-1) ... Removing r-bioc-biobase (2.42.0-1) ... Removing r-bioc-biostrings (2.50.2-1) ... Removing r-bioc-xvector (0.22.0-1) ... Removing r-bioc-iranges (2.16.0-1) ... Removing r-bioc-s4vectors (0.20.1-2) ... Removing r-bioc-genomeinfodbdata (1.2.0-1) ... Removing r-cran-cli (1.0.1-1) ... Removing r-cran-assertthat (0.2.0-2) ... Removing r-cran-bitops (1.0-6-4) ... Removing r-cran-crayon (1.3.4-4) ... Removing r-cran-lattice (0.20-38-1) ... Removing r-cran-matrixstats (0.54.0-1) ... Removing r-cran-pkgkitten (0.1.4-2) ... Removing r-bioc-biocparallel (1.16.6-1) ... Removing r-cran-snow (1:0.4.3-1) ... Removing r-bioc-biocgenerics (0.28.0-2) ... Removing r-cran-futile.logger (1.4.3-3) ... Removing r-cran-lambda.r (1.2.3-2) ... Removing r-cran-formatr (1.5-3) ... Removing r-cran-futile.options (1.0.1-2) ... Removing r-base-core (3.5.2-1) ... Removing ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libcurl4:amd64 (7.64.0-4+deb10u6) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libexpat1:amd64 (2.2.6-2+deb10u6) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u4) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u5) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u7) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libkrb5-3:amd64 (1.17-3+deb10u5) ... Removing libk5crypto3:amd64 (1.17-3+deb10u5) ... Removing libkrb5support0:amd64 (1.17-3+deb10u5) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libpixman-1-0:amd64 (0.36.0-1+deb10u1) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libreadline7:amd64 (7.0-5) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing openssl (1.1.1n-0+deb10u5) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u5) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libthai-data (0.1.28-2) ... Removing libwebp6:amd64 (0.6.1-2+deb10u2) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing readline-common (7.0-5) ... Removing ucf (3.0038+nmu1) ... Removing sensible-utils (0.0.12) ... Removing unzip (6.0-23+deb10u3) ... Removing xdg-utils (1.1.3-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u3) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libx11-data (2:1.6.7-1+deb10u3) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 1m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu63:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'openssl', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-bsgenome', 'r-bioc-cner', 'r-bioc-delayedarray', 'r-bioc-dirichletmultinomial', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-go.db', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-seqlogo', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-catools', 'r-cran-cli', 'r-cran-clipr', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-digest', 'r-cran-fansi', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hms', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-powerlaw', 'r-cran-prettyunits', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-readr', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tfmpvalue', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vgam', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-tfbstools'] 1m30.1s INFO: Running scripts post_remove 1m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_remove_exceptions'] 1m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_remove_exceptions'] 1m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu63:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'openssl', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-bsgenome', 'r-bioc-cner', 'r-bioc-delayedarray', 'r-bioc-dirichletmultinomial', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-go.db', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-seqlogo', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-catools', 'r-cran-cli', 'r-cran-clipr', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-digest', 'r-cran-fansi', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hms', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-powerlaw', 'r-cran-prettyunits', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-readr', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tfmpvalue', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vgam', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 1m31.2s DUMP: (Reading database ... 6516 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u4) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgsl23 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u5) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u7) ... dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28) ... dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u5) ... dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed Purging configuration files for openssl (1.1.1n-0+deb10u5) ... Purging configuration files for r-base-core (3.5.2-1) ... dpkg: warning: ignoring request to remove r-bioc-annotate which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-bsgenome which isn't installed dpkg: warning: ignoring request to remove r-bioc-cner which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed dpkg: warning: ignoring request to remove r-bioc-dirichletmultinomial which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-go.db which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-keggrest which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-seqlogo which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-askpass which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-blob which isn't installed dpkg: warning: ignoring request to remove r-cran-catools which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-clipr which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-gtools which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-powerlaw which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which isn't installed dpkg: warning: ignoring request to remove r-cran-r.oo which isn't installed dpkg: warning: ignoring request to remove r-cran-r.utils which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed Purging configuration files for r-cran-rcurl (1.95-4.11-1) ... dpkg: warning: ignoring request to remove r-cran-readr which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-sys which isn't installed dpkg: warning: ignoring request to remove r-cran-tfmpvalue which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vgam which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u3) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu63:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'openssl', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-bsgenome', 'r-bioc-cner', 'r-bioc-delayedarray', 'r-bioc-dirichletmultinomial', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-go.db', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-seqlogo', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-catools', 'r-cran-cli', 'r-cran-clipr', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-digest', 'r-cran-fansi', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hms', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-powerlaw', 'r-cran-prettyunits', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-readr', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tfmpvalue', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vgam', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 1m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg', '--purge', 'r-bioc-tfbstools'] 1m31.3s DUMP: dpkg: warning: ignoring request to remove r-bioc-tfbstools which isn't installed 1m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg', '--purge', 'r-bioc-tfbstools'] 1m31.3s INFO: Running scripts post_purge 1m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_purge_exceptions'] 1m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_purge_exceptions'] 1m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg', '--purge', '--pending'] 1m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg', '--purge', '--pending'] 1m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg', '--remove', '--pending'] 1m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg', '--remove', '--pending'] 1m31.3s INFO: Running scripts post_test 1m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_test_exceptions'] 1m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'tmp/scripts/post_test_exceptions'] 1m31.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m31.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg-divert', '--list'] 1m31.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'dpkg-divert', '--list'] 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', 'clean'] 1m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpotxu4h14', 'apt-get', 'clean'] 1m31.7s DEBUG: Recording chroot state 1m32.4s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned 1m32.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/shm'] 1m32.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/shm'] 1m32.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/console'] 1m32.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/console'] 1m32.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/ptmx'] 1m32.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/ptmx'] 1m32.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/pts'] 1m32.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/dev/pts'] 1m32.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/proc'] 1m32.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpotxu4h14/proc'] 1m32.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m33.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpotxu4h14'] 1m33.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpotxu4h14 1m33.0s INFO: PASS: Upgrading between Debian distributions. 1m33.0s INFO: PASS: All tests. 1m33.0s INFO: piuparts run ends. ret=0 End: 2023-07-05 18:23:08 GMT