Start: 2024-12-18 17:51:50 GMT Package: r-bioc-rcwl Version: 1.22.0+ds-1 Installed-Size: 421 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.20, r-cran-yaml, r-bioc-s4vectors (>= 0.42.1), r-bioc-biocparallel (>= 1.38.0), r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool, r-bioc-basilisk (>= 1.16.0) Suggests: r-cran-testthat, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle Description: An R interface to the Common Workflow Language Homepage: https://rcwl.org/Rcwl/ Description-md5: 93cc119718e4f3d84d6372663e7d3cc6 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.22.0+ds-1_all.deb Size: 327472 MD5sum: 5f3bf1462ccd10a08dad2e4da99c3560 SHA256: 27c7c0924c3a4b3e7955eccd08285cd98ea22c3f317a02830514fe2510b963ad Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d experimental --no-upgrade-test --apt r-bioc-rcwl=1.22.0+ds-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d experimental --no-upgrade-test --apt r-bioc-rcwl=1.22.0+ds-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpvhez_vbk 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpvhez_vbk 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main deb http://deb.debian.org/debian/ experimental main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpvhez_vbk/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', 'update'] 0m4.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian experimental InRelease [101 kB] Get:3 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:4 http://deb.debian.org/debian sid/main Translation-en [7350 kB] Get:5 http://deb.debian.org/debian experimental/main amd64 Packages [437 kB] Get:6 http://deb.debian.org/debian experimental/main Translation-en [273 kB] Fetched 18.4 MB in 3s (5515 kB/s) Reading package lists... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', 'update'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-14-base libgcc-s1 libstdc++6 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 834 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-11 [48.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-11 [713 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-11 [72.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 834 kB in 0s (6649 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-11_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-11) over (14.2.0-8) ... Setting up gcc-14-base:amd64 (14.2.0-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-11_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-11) over (14.2.0-8) ... Setting up libstdc++6:amd64 (14.2.0-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-11_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-11) over (14.2.0-8) ... Setting up libgcc-s1:amd64 (14.2.0-11) ... Processing triggers for libc-bin (2.40-4) ... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s DUMP: 5930394a14c3aa3444a6f69fbe0ffaf4 - 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s INFO: Running scripts post_setup 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_forbid_home'] 0m7.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_forbid_home'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', 'clean'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', 'clean'] 0m7.7s DEBUG: Recording chroot state 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.2s DUMP: install ok installed apt apt 2.9.17 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.2-12 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2~rc1-2 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-11 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.2 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.17 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-12 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-4 install ok installed libc6:amd64 libc6 2.40-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2~rc1-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.274 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2~rc1-2 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-11 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-12 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-12 install ok installed libss2:amd64 libss2 1.47.2~rc1-2 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-11 install ok installed libsystemd0:amd64 libsystemd0 257-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257-2 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-12 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-12 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2~rc1-2 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-12 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-12 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg-divert', '--list'] 0m8.2s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg-divert', '--list'] 0m8.2s INFO: Running scripts is_testable 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s INFO: apt-cache does not know about any of the requested packages 0m8.2s INFO: Running scripts pre_test 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_test_root_password'] 0m8.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_test_root_password'] 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 0m8.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 0m9.1s DEBUG: No broken symlinks as far as we can find. 0m9.1s INFO: Running scripts pre_install 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 0m9.9s DEBUG: No broken symlinks as far as we can find. 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-cache', 'policy'] 0m10.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 1 http://deb.debian.org/debian experimental/main amd64 Packages release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-cache', 'policy'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-cache', 'policy', 'r-bioc-rcwl'] 0m10.9s DUMP: r-bioc-rcwl: Installed: (none) Candidate: 1.20.0+ds-1 Version table: 1.22.0+ds-1 1 1 http://deb.debian.org/debian experimental/main amd64 Packages 1.20.0+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-cache', 'policy', 'r-bioc-rcwl'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', '-y', '-t', 'experimental', 'install', 'r-bioc-rcwl=1.22.0+ds-1'] 1m30.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax graphviz javascript-common libabsl20230802 libamd3 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt5 libcgraph6 libcolamd3 libcrypt-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-14-dev libgd3 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgvc6 libgvplugin-gd libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu72 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblerc4 liblsan0 libltdl7 liblua5.4-0 libncursesw6 libnghttp2-14 libnsl2 libnuma1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0 libraqm0 librav1e0.7 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libssl3t64 libstdc++-14-dev libsuitesparseconfig7 libsvtav1enc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev littler media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl openssl-provider-legacy pandoc pandoc-data perl perl-modules-5.40 procps python3 python3-arcp python3-argcomplete python3-autocommand python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-lxml python3-minimal python3-mistune python3-more-itertools python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-prov python3-psutil python3-pydot python3-pyparsing python3-rdflib python3-requests python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-setuptools python3-spython python3-typeguard python3-typing-extensions python3-urllib3 python3-zipp python3.12 python3.12-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-munsell r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip Suggested packages: podman | docker.io | singularity-container cwltool-doc gsfonts graphviz-doc apache2 | lighttpd | httpd libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev libgd-tools gdbm-l10n low-memory-monitor libiodbc2-dev default-libmysqlclient-dev krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc libstdc++-14-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex citation-style-language-styles perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-charset-normalizer-doc cwl-utils python-lxml-doc python-prov-doc python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-setuptools-doc singularity-container python3-brotli python3.12-venv python3.12-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-biocstyle r-cran-testthat r-cran-callr r-bioc-biobase r-bioc-iranges r-bioc-s4arrays r-bioc-sparsearray r-bioc-delayedarray r-bioc-hdf5array r-bioc-genomicranges r-bioc-pwalign r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-bioc-summarizedexperiment r-bioc-graph r-cran-e1071 r-cran-future r-cran-future.batchtools r-cran-parallelmap r-cran-rpart r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-curl r-cran-rsvg r-cran-plyr r-cran-uuid r-cran-lubridate r-cran-getopt r-cran-httr r-cran-dbi r-cran-formattable r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-tinytest r-cran-rmpi r-cran-rlecuyer r-cran-bench r-cran-blob r-cran-brio r-cran-pkgbuild r-cran-pkgload r-cran-webshot r-cran-colourpicker r-cran-ggraph r-cran-tidygraph r-cran-flashclust r-cran-plm r-cran-zoo readline-doc Recommended packages: nodejs fonts-liberation manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs libheif-plugin-x265 libheif-plugin-aomenc node-jquery krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules psmisc linux-sysctl-defaults python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-matplotlib python3-numpy python3-pygraphviz python3-scipy python3-yaml python3-html5rdf python3-orjson black r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-openssl r-cran-ranger r-cran-curl r-cran-future r-cran-ggplot2 r-cran-thematic r-cran-fastmatch r-cran-devtools r-cran-microbenchmark r-cran-tinytest r-cran-callr r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-whoami r-cran-kernsmooth r-cran-mass r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis r-cran-xml2 r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-xts r-cran-zoo r-cran-markdown r-cran-broom r-cran-dbi r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-unitizer r-cran-rsvg r-cran-testit r-cran-spelling r-cran-survival r-cran-pkgload r-cran-waldo r-cran-cairo r-cran-ragg r-cran-ape r-bioc-graph r-cran-rgl r-cran-vdiffr r-cran-httr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick r-cran-tikzdevice r-cran-webshot r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-lubridate r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-mockr r-cran-dichromat r-cran-dt r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-nleqslv r-cran-remotes r-cran-renv r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax graphviz javascript-common libabsl20230802 libamd3 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt5 libcgraph6 libcolamd3 libcrypt-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-14-dev libgd3 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgvc6 libgvplugin-gd libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu72 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblerc4 liblsan0 libltdl7 liblua5.4-0 libncursesw6 libnghttp2-14 libnsl2 libnuma1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0 libraqm0 librav1e0.7 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-14-dev libsuitesparseconfig7 libsvtav1enc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev littler media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data perl perl-modules-5.40 procps python3 python3-arcp python3-argcomplete python3-autocommand python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-lxml python3-minimal python3-mistune python3-more-itertools python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-prov python3-psutil python3-pydot python3-pyparsing python3-rdflib python3-requests python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-setuptools python3-spython python3-typeguard python3-typing-extensions python3-urllib3 python3-zipp python3.12 python3.12-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-rcwl r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-munsell r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip The following packages will be upgraded: libssl3t64 openssl-provider-legacy 2 upgraded, 322 newly installed, 0 to remove and 9 not upgraded. Need to get 243 MB of archives. After this operation, 1037 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian experimental/main amd64 openssl-provider-legacy amd64 3.4.0-1 [301 kB] Get:2 http://deb.debian.org/debian experimental/main amd64 libssl3t64 amd64 3.4.0-1 [2302 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:8 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:13 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:18 http://deb.debian.org/debian experimental/main amd64 readline-common all 8.3~alpha1-2 [71.0 kB] Get:19 http://deb.debian.org/debian experimental/main amd64 libreadline8t64 amd64 8.3~alpha1-2 [177 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get:22 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get:24 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get:26 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get:27 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:28 http://deb.debian.org/debian experimental/main amd64 openssl amd64 3.4.0-1 [1422 kB] Get:29 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:30 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.0-8 [3015 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.0-8 [4320 kB] Get:34 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.0-8 [267 kB] Get:35 http://deb.debian.org/debian sid/main amd64 ucf all 3.0045 [45.2 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:37 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:40 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:41 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:42 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:43 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get:44 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2+b1 [179 kB] Get:45 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get:46 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get:47 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.8-2 [41.6 kB] Get:49 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.2.3-4 [112 kB] Get:50 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:51 http://deb.debian.org/debian experimental/main amd64 python3-requests all 2.32.3+dfsg-2 [72.0 kB] Get:52 http://deb.debian.org/debian sid/main amd64 python3-msgpack amd64 1.0.3-3+b3 [112 kB] Get:53 http://deb.debian.org/debian sid/main amd64 python3-cachecontrol all 0.14.1-1 [18.6 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-mistune all 3.0.2-2 [33.2 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-mypy-extensions all 1.0.0-1 [6064 B] Get:56 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-rdflib all 7.1.1-2 [472 kB] Get:58 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.16.1-1 [12.6 kB] Get:59 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:61 http://deb.debian.org/debian sid/main amd64 python3-schema-salad amd64 8.8.20241206093842-1 [1220 kB] Get:62 http://deb.debian.org/debian sid/main amd64 cwl-upgrader all 1.2.11-1 [15.7 kB] Get:63 http://deb.debian.org/debian sid/main amd64 python3-argcomplete all 3.5.2-1 [40.2 kB] Get:64 http://deb.debian.org/debian sid/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get:65 http://deb.debian.org/debian sid/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get:67 http://deb.debian.org/debian sid/main amd64 python3-cwl-utils all 0.36-1 [125 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:71 http://deb.debian.org/debian experimental/main amd64 libxslt1.1 amd64 1.1.39-0exp1 [159 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:74 http://deb.debian.org/debian sid/main amd64 python3-prov all 2.0.1-1 [95.1 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 5.9.8-2 [225 kB] Get:76 http://deb.debian.org/debian experimental/main amd64 libcdt5 amd64 12.2.1-1 [19.2 kB] Get:77 http://deb.debian.org/debian experimental/main amd64 libcgraph6 amd64 12.2.1-1 [51.9 kB] Get:78 http://deb.debian.org/debian experimental/main amd64 libltdl7 amd64 2.5.4-1 [415 kB] Get:79 http://deb.debian.org/debian experimental/main amd64 libpathplan4 amd64 12.2.1-1 [23.6 kB] Get:80 http://deb.debian.org/debian experimental/main amd64 libxdot4 amd64 12.2.1-1 [21.4 kB] Get:81 http://deb.debian.org/debian experimental/main amd64 libgvc6 amd64 12.2.1-1 [362 kB] Get:82 http://deb.debian.org/debian experimental/main amd64 libgvpr2 amd64 12.2.1-1 [121 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.44-3 [280 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:86 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:87 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:88 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b3 [27.8 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libaom3 amd64 3.11.0-1 [1879 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libdav1d7 amd64 1.5.0-1+b1 [550 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libgav1-1 amd64 0.19.0-2+b2 [350 kB] Get:105 http://deb.debian.org/debian sid/main amd64 librav1e0.7 amd64 0.7.1-7+b3 [940 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0.1898.20241125-1 [172 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libavif16 amd64 1.1.1-1 [117 kB] Get:110 http://deb.debian.org/debian experimental/main amd64 libsharpyuv0 amd64 1.5.0~rc1-0.1~exp1 [116 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libheif-plugin-dav1d amd64 1.19.3-1 [11.2 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libde265-0 amd64 1.0.15-1+b2 [189 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [15.0 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libheif1 amd64 1.19.3-1 [489 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-11 [137 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-11 [9284 B] Get:119 http://deb.debian.org/debian experimental/main amd64 libglib2.0-0t64 amd64 2.83.2-1 [1509 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.1.0-1 [478 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:125 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:126 http://deb.debian.org/debian experimental/main amd64 libwebp7 amd64 1.5.0~rc1-0.1~exp1 [318 kB] Get:127 http://deb.debian.org/debian experimental/main amd64 libtiff6 amd64 4.6.0-2 [325 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libxpm4 amd64 1:3.5.17-1+b2 [56.3 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB] Get:130 http://deb.debian.org/debian experimental/main amd64 libgvplugin-gd amd64 12.2.1-1 [25.9 kB] Get:131 http://deb.debian.org/debian experimental/main amd64 graphviz amd64 12.2.1-1 [60.1 kB] Get:132 http://deb.debian.org/debian sid/main amd64 python3-pydot all 2.0.0-3 [32.6 kB] Get:133 http://deb.debian.org/debian sid/main amd64 python3-spython all 0.3.13-2 [55.2 kB] Get:134 http://deb.debian.org/debian sid/main amd64 python3-arcp all 0.2.1-7 [13.6 kB] Get:135 http://deb.debian.org/debian sid/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:136 http://deb.debian.org/debian sid/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:137 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get:138 http://deb.debian.org/debian sid/main amd64 cwltool all 3.1.20241112140730-1 [514 kB] Get:139 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get:140 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:141 http://deb.debian.org/debian sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:142 http://deb.debian.org/debian sid/main amd64 javascript-common all 11+nmu1 [6260 B] Get:143 http://deb.debian.org/debian sid/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-11 [2728 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-11 [26.0 kB] Get:148 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-11 [1205 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-11 [2461 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-11 [1075 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-11 [1489 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-11 [146 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-11 [2673 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.40-4 [52.0 kB] Get:155 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.5-1 [2474 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:157 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.40-4 [1954 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-11 [2373 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB] Get:161 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:162 http://deb.debian.org/debian sid/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:168 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-11 [836 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB] Get:174 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get:185 http://deb.debian.org/debian sid/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:192 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get:193 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.7-1+b1 [147 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [225 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [54.6 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [35.4 kB] Get:200 http://deb.debian.org/debian experimental/main amd64 libpaper2 amd64 2.2.5-0.2 [16.3 kB] Get:201 http://deb.debian.org/debian experimental/main amd64 libpaper-utils amd64 2.2.5-0.2 [16.2 kB] Get:202 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b3 [54.6 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get:210 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-14 [233 kB] Get:211 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:212 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:213 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get:214 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.20-2 [103 kB] Get:215 http://deb.debian.org/debian sid/main amd64 littler all 0.3.20-2 [16.0 kB] Get:216 http://deb.debian.org/debian sid/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get:217 http://deb.debian.org/debian sid/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get:218 http://deb.debian.org/debian sid/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get:219 http://deb.debian.org/debian sid/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get:220 http://deb.debian.org/debian sid/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB] Get:221 http://deb.debian.org/debian experimental/main amd64 r-bioc-biocgenerics all 0.52.0-1 [627 kB] Get:222 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get:223 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get:224 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:225 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.13-1-1 [2074 kB] Get:226 http://deb.debian.org/debian sid/main amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [108 kB] Get:227 http://deb.debian.org/debian sid/main amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] Get:228 http://deb.debian.org/debian sid/main amd64 r-cran-here all 1.0.1-2 [48.7 kB] Get:229 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] Get:230 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Get:231 http://deb.debian.org/debian sid/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get:232 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get:233 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get:234 http://deb.debian.org/debian sid/main amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1512 kB] Get:235 http://deb.debian.org/debian sid/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB] Get:236 http://deb.debian.org/debian experimental/main amd64 r-bioc-dir.expiry all 1.14.0+ds-1 [32.3 kB] Get:237 http://deb.debian.org/debian experimental/main amd64 r-bioc-basilisk.utils all 1.18.0+ds-1 [78.4 kB] Get:238 http://deb.debian.org/debian experimental/main amd64 r-bioc-basilisk amd64 1.18.0+ds-1 [98.9 kB] Get:239 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get:240 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:241 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:242 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:243 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:244 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:245 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:246 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get:247 http://deb.debian.org/debian experimental/main amd64 r-bioc-biocparallel amd64 1.40.0-1 [1326 kB] Get:248 http://deb.debian.org/debian sid/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB] Get:249 http://deb.debian.org/debian experimental/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-1 [2060 kB] Get:250 http://deb.debian.org/debian sid/main amd64 r-cran-backports amd64 1.5.0-2 [121 kB] Get:251 http://deb.debian.org/debian sid/main amd64 r-cran-base64url amd64 1.4-2+b1 [26.4 kB] Get:252 http://deb.debian.org/debian sid/main amd64 r-cran-brew all 1.0-10-1 [70.1 kB] Get:253 http://deb.debian.org/debian sid/main amd64 r-cran-checkmate amd64 2.3.2-1 [705 kB] Get:254 http://deb.debian.org/debian sid/main amd64 r-cran-data.table amd64 1.16.2+dfsg-1 [1978 kB] Get:255 http://deb.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Get:256 http://deb.debian.org/debian sid/main amd64 r-cran-fs amd64 1.6.4+dfsg-1 [247 kB] Get:257 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get:258 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB] Get:259 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Get:260 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:261 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:262 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:263 http://deb.debian.org/debian sid/main amd64 r-cran-hms all 1.1.3-1 [104 kB] Get:264 http://deb.debian.org/debian sid/main amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] Get:265 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:266 http://deb.debian.org/debian sid/main amd64 r-cran-progress all 1.2.3-1 [93.0 kB] Get:267 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.4-1 [895 kB] Get:268 http://deb.debian.org/debian sid/main amd64 r-cran-batchtools amd64 0.9.17+dfsg-1 [712 kB] Get:269 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:270 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:271 http://deb.debian.org/debian sid/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get:272 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:273 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get:274 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get:275 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB] Get:276 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB] Get:277 http://deb.debian.org/debian sid/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get:278 http://deb.debian.org/debian sid/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB] Get:279 http://deb.debian.org/debian sid/main amd64 r-cran-htmltools amd64 0.5.8.1-1 [378 kB] Get:280 http://deb.debian.org/debian sid/main amd64 r-cran-evaluate all 1.0.0-1 [112 kB] Get:281 http://deb.debian.org/debian sid/main amd64 r-cran-xfun amd64 0.49+dfsg-1 [546 kB] Get:282 http://deb.debian.org/debian sid/main amd64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get:283 http://deb.debian.org/debian sid/main amd64 r-cran-knitr all 1.49+dfsg-1 [861 kB] Get:284 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB] Get:285 http://deb.debian.org/debian sid/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get:286 http://deb.debian.org/debian sid/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get:287 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get:288 http://deb.debian.org/debian sid/main amd64 r-cran-sass amd64 0.4.9+dfsg-1 [965 kB] Get:289 http://deb.debian.org/debian sid/main amd64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get:290 http://deb.debian.org/debian sid/main amd64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get:291 http://deb.debian.org/debian sid/main amd64 r-cran-tinytex all 0.53-1 [146 kB] Get:292 http://deb.debian.org/debian sid/main amd64 r-cran-later amd64 1.3.2+dfsg-1 [118 kB] Get:293 http://deb.debian.org/debian sid/main amd64 r-cran-promises amd64 1.3.0+dfsg-1 [284 kB] Get:294 http://deb.debian.org/debian sid/main amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [493 kB] Get:295 http://deb.debian.org/debian sid/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:296 http://deb.debian.org/debian sid/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB] Get:297 http://deb.debian.org/debian sid/main amd64 r-cran-commonmark amd64 1.9.2-2 [122 kB] Get:298 http://deb.debian.org/debian sid/main amd64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get:299 http://deb.debian.org/debian sid/main amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get:300 http://deb.debian.org/debian sid/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] Get:301 http://deb.debian.org/debian sid/main amd64 r-cran-igraph amd64 2.0.3-1 [5037 kB] Get:302 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.0.2-1 [507 kB] Get:303 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:304 http://deb.debian.org/debian sid/main amd64 r-cran-clipr all 0.8.0-1 [53.0 kB] Get:305 http://deb.debian.org/debian sid/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB] Get:306 http://deb.debian.org/debian sid/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get:307 http://deb.debian.org/debian sid/main amd64 r-cran-tzdb amd64 0.4.0-2 [499 kB] Get:308 http://deb.debian.org/debian sid/main amd64 r-cran-vroom amd64 1.6.5-1 [830 kB] Get:309 http://deb.debian.org/debian sid/main amd64 r-cran-readr amd64 2.1.5-1 [759 kB] Get:310 http://deb.debian.org/debian sid/main amd64 r-cran-rstudioapi all 0.17.1-1 [307 kB] Get:311 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Get:312 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get:313 http://deb.debian.org/debian sid/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB] Get:314 http://deb.debian.org/debian sid/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Get:315 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get:316 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get:317 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:318 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Get:319 http://deb.debian.org/debian sid/main amd64 r-cran-visnetwork all 2.1.2+ds-1 [2983 kB] Get:320 http://deb.debian.org/debian sid/main amd64 r-cran-diagrammer all 1.0.11+ds-2 [1505 kB] Get:321 http://deb.debian.org/debian sid/main amd64 r-cran-r.methodss3 all 1.8.2-1 [84.5 kB] Get:322 http://deb.debian.org/debian sid/main amd64 r-cran-r.oo all 1.26.0-1 [961 kB] Get:323 http://deb.debian.org/debian sid/main amd64 r-cran-r.utils all 2.12.3-1 [1396 kB] Get:324 http://deb.debian.org/debian experimental/main amd64 r-bioc-rcwl all 1.22.0+ds-1 [327 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 243 MB in 27s (9068 kB/s) (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3~alpha1-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../14-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... 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Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b2) ... Setting up libjs-sifter.js (0.6.0+dfsg-3) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up unzip (6.0-28) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libuv1t64:amd64 (1.48.0-7) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up node-html5shiv (3.7.3+dfsg-5) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.22-1) ... Setting up linux-libc-dev (6.12.5-1) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libgomp1:amd64 (14.2.0-11) ... Setting up libjs-modernizr (3.13.0-0.1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libjs-es5-shim (4.6.7-2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up zip (3.0-14) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libpathplan4:amd64 (12.2.1-1) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libquadmath0:amd64 (14.2.0-11) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libproc2-0:amd64 (2:4.0.4-6) ... Setting up libjs-d3 (3.5.17-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-3) ... Setting up libatomic1:amd64 (14.2.0-11) ... Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.5-2+b1) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libltdl7:amd64 (2.5.4-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-11) ... Setting up libwebp7:amd64 (1.5.0~rc1-0.1~exp1) ... Setting up libubsan1:amd64 (14.2.0-11) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... Setting up libdav1d7:amd64 (1.5.0-1+b1) ... Setting up perl-modules-5.40 (5.40.0-8) ... Setting up sensible-utils (0.0.24) ... Setting up libhwasan0:amd64 (14.2.0-11) ... Setting up libcrypt-dev:amd64 (1:4.4.36-5) ... Setting up libtiff6:amd64 (4.6.0-2) ... Setting up librav1e0.7:amd64 (0.7.1-7+b3) ... Setting up libasan8:amd64 (14.2.0-11) ... Setting up procps (2:4.0.4-6) ... Setting up libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... Setting up liblua5.4-0:amd64 (5.4.7-1+b1) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Setting up node-bootstrap-sass (3.4.3-2) ... Setting up libabsl20230802:amd64 (20230802.1-4) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libcdt5:amd64 (12.2.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libcgraph6:amd64 (12.2.1-1) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... Setting up libpaper2:amd64 (2.2.5-0.2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up pandoc-data (3.1.11.1-3) ... Setting up libtsan2:amd64 (14.2.0-11) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libde265-0:amd64 (1.0.15-1+b2) ... Setting up libc-dev-bin (2.40-4) ... Setting up openssl (3.4.0-1) ... Setting up node-normalize.css (8.0.1-5) ... Setting up libyuv0:amd64 (0.0.1898.20241125-1) ... Setting up readline-common (8.3~alpha1-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liblsan0:amd64 (14.2.0-11) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libitm1:amd64 (14.2.0-11) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up libxpm4:amd64 (1:3.5.17-1+b2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b3) ... Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libpaper-utils (2.2.5-0.2) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up libperl5.40:amd64 (5.40.0-8) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up perl (5.40.0-8) ... Setting up libglib2.0-0t64:amd64 (2.83.2-1) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (3.1.11.1+ds-2) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libglpk40:amd64 (5.0-1+b2) ... Setting up libgvc6:amd64 (12.2.1-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libgav1-1:amd64 (0.19.0-2+b2) ... Setting up ucf (3.0045) ... Setting up libreadline8t64:amd64 (8.3~alpha1-2) ... Setting up libgvpr2:amd64 (12.2.1-1) ... Setting up libxslt1.1:amd64 (1.1.39-0exp1) ... Setting up libc6-dev:amd64 (2.40-4) ... Setting up libharfbuzz0b:amd64 (10.1.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libgcc-14-dev:amd64 (14.2.0-11) ... Setting up libstdc++-14-dev:amd64 (14.2.0-11) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.1.1-1) ... Setting up libxft2:amd64 (2.3.6-1+b3) ... Setting up libboost1.83-dev:amd64 (1.83.0-4) ... Setting up libcurl4t64:amd64 (8.11.1-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libpango-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up python3.12 (3.12.8-3) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.22-6-1) ... Setting up r-cran-farver (2.1.2-1) ... Setting up r-cran-formatr (1.14-2) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up r-cran-clipr (0.8.0-1) ... Setting up r-cran-commonmark (1.9.2-2) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-cran-filelock (1.0.3-1) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up r-cran-littler (0.3.20-2) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-fs (1.6.4+dfsg-1) ... Setting up r-cran-rcpp (1.0.13-1-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-bioc-biocgenerics (0.52.0-1) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up littler (0.3.20-2) ... Setting up r-cran-xfun (0.49+dfsg-1) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up r-cran-backports (1.5.0-2) ... Setting up r-cran-mime (0.12-2) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-yaml (2.3.10-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-evaluate (1.0.0-1) ... Setting up r-cran-highr (0.11+dfsg-1) ... Setting up r-cran-prettyunits (1.2.0-1) ... Setting up r-cran-fansi (1.0.5-1) ... Setting up r-cran-checkmate (2.3.2-1) ... Setting up python3 (3.12.7-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up r-cran-data.table (1.16.2+dfsg-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up r-cran-glue (1.8.0-1) ... Setting up r-cran-bit (4.0.5-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up r-cran-rprojroot (2.0.4-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up r-cran-png (0.1-8-1+b1) ... Setting up r-cran-r.methodss3 (1.8.2-1) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up r-cran-rstudioapi (0.17.1-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up r-cran-brew (1.0-10-1) ... Setting up python3-packaging (24.2-1) ... Setting up r-cran-colorspace (2.1-1+dfsg-1) ... Setting up r-cran-stringi (1.8.4-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-spython (0.3.13-2) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.44.0+dfsg-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up r-cran-later (1.3.2+dfsg-1) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-here (1.0.1-2) ... Setting up r-cran-htmltools (0.5.8.1-1) ... Setting up r-cran-tinytex (0.53-1) ... Setting up python3-urllib3 (2.2.3-4) ... Setting up r-cran-knitr (1.49+dfsg-1) ... Setting up r-cran-rcpptoml (0.2.2+dfsg-1) ... Setting up python3-lxml:amd64 (5.3.0-1+b1) ... Setting up python3-rdflib (7.1.1-2) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-cran-sass (0.4.9+dfsg-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-msgpack (1.0.3-3+b3) ... Setting up r-cran-tzdb (0.4.0-2) ... Setting up r-cran-reticulate (1.39.0+dfsg-1) ... Setting up r-bioc-dir.expiry (1.14.0+ds-1) ... Setting up python3-argcomplete (3.5.2-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-mistune (3.0.2-2) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-bioc-basilisk.utils (1.18.0+ds-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-arcp (0.2.1-7) ... Setting up r-cran-base64url (1.4-2+b1) ... Setting up python3-filelock (3.16.1-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up r-bioc-biocparallel (1.40.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-mypy-extensions (1.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2+b1) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up r-cran-igraph (2.0.3-1) ... Setting up r-cran-r.oo (1.26.0-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up r-bioc-basilisk (1.18.0+ds-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up r-cran-hms (1.1.3-1) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.3.0+dfsg-1) ... Setting up r-cran-purrr (1.0.2-1) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up r-cran-dplyr (1.1.4-4) ... Setting up r-cran-progress (1.2.3-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up r-cran-r.utils (2.12.3-1) ... Setting up r-cran-vroom (1.6.5-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up r-cran-httpuv (1.6.15+dfsg-1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-prov (2.0.1-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up r-cran-readr (2.1.5-1) ... Setting up python3-requests (2.32.3+dfsg-2) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-cran-batchtools (0.9.17+dfsg-1) ... Setting up python3-cachecontrol (0.14.1-1) ... Setting up python3-schema-salad (8.8.20241206093842-1) ... Setting up r-cran-shiny (1.9.1+dfsg-1) ... Setting up cwl-upgrader (1.2.11-1) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up python3-cwl-utils (0.36-1) ... Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... Setting up r-cran-visnetwork (2.1.2+ds-1) ... Setting up r-cran-diagrammer (1.0.11+ds-2) ... Setting up libheif-plugin-dav1d:amd64 (1.19.3-1) ... Setting up libheif-plugin-libde265:amd64 (1.19.3-1) ... Setting up libheif1:amd64 (1.19.3-1) ... Setting up libgd3:amd64 (2.3.3-12+b1) ... Setting up libgvplugin-gd:amd64 (12.2.1-1) ... Setting up graphviz (12.2.1-1) ... graphviz.postinst configure Setting up python3-pydot (2.0.0-3) ... Setting up cwltool (3.1.20241112140730-1) ... Setting up r-bioc-rcwl (1.22.0+ds-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', '-y', '-t', 'experimental', 'install', 'r-bioc-rcwl=1.22.0+ds-1'] 1m30.5s INFO: Running scripts post_install 1m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_install_exceptions'] 1m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_install_exceptions'] 1m30.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 1m34.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 1m40.7s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-networkx) 1m44.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', '-ac', '--ignore-obsolete'] 1m50.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', '-ac', '--ignore-obsolete'] 1m50.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m50.7s DUMP: 0.15.6 1m50.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m50.7s INFO: Running adequate version 0.15.6 now. 1m50.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'r-bioc-rcwl'] 1m50.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'r-bioc-rcwl'] 1m50.9s INFO: Running scripts pre_remove 1m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_exceptions'] 2m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/pre_remove_exceptions'] 2m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m5.1s DUMP: install ok installed apt apt 2.9.17 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.2-12 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.5-1+b1 install ok installed cwl-upgrader cwl-upgrader 1.2.11-1 install ok installed cwltool cwltool 3.1.20241112140730-1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2~rc1-2 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-1.1+b1 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1+b1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-11 install ok installed gpgv gpgv 2.2.45-2 install ok installed graphviz graphviz 12.2.1-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.2 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed javascript-common javascript-common 11+nmu1 install ok installed libabsl20230802:amd64 libabsl20230802 20230802.1-4 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libamd3:amd64 libamd3 1:7.8.3+dfsg-2 install ok installed libaom3:amd64 libaom3 3.11.0-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.17 install ok installed libasan8:amd64 libasan8 14.2.0-11 install ok installed libatomic1:amd64 libatomic1 14.2.0-11 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libavif16:amd64 libavif16 1.1.1-1 install ok installed libblas3:amd64 libblas3 3.12.0-4 install ok installed libblkid1:amd64 libblkid1 2.40.2-12 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-4 install ok installed libc-dev-bin libc-dev-bin 2.40-4 install ok installed libc6:amd64 libc6 2.40-4 install ok installed libc6-dev:amd64 libc6-dev 2.40-4 install ok installed libcairo2:amd64 libcairo2 1.18.2-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcdt5:amd64 libcdt5 12.2.1-1 install ok installed libcgraph6:amd64 libcgraph6 12.2.1-1 install ok installed libcolamd3:amd64 libcolamd3 1:7.8.3+dfsg-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.2~rc1-2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libcurl4t64:amd64 libcurl4t64 8.11.1-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1 install ok installed libdav1d7:amd64 libdav1d7 1.5.0-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libde265-0:amd64 libde265-0 1.0.15-1+b2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.274 install ok installed libdeflate0:amd64 libdeflate0 1.22-1 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2~rc1-2 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1+b1 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgav1-1:amd64 libgav1-1 0.19.0-2+b2 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-11 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-11 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgd3:amd64 libgd3 2.3.3-12+b1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-11 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.83.2-1 install ok installed libglpk40:amd64 libglpk40 5.0-1+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-11 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libgvc6:amd64 libgvc6 12.2.1-1 install ok installed libgvplugin-gd:amd64 libgvplugin-gd 12.2.1-1 install ok installed libgvpr2:amd64 libgvpr2 12.2.1-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.1.0-1 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.19.3-1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.19.3-1 install ok installed libheif1:amd64 libheif1 1.19.3-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libhwasan0:amd64 libhwasan0 14.2.0-11 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu72:amd64 libicu72 72.1-5+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libitm1:amd64 libitm1 14.2.0-11 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3+b1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.1+dfsg1-4 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-es5-shim libjs-es5-shim 4.6.7-2 install ok installed libjs-highlight.js libjs-highlight.js 9.18.5+dfsg1-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-json libjs-json 0~20221030+~1.0.8-1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1.1 install ok installed libjs-modernizr libjs-modernizr 3.13.0-0.1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-1.1 install ok installed libjs-sifter.js libjs-sifter.js 0.6.0+dfsg-3 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4.1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed liblapack3:amd64 liblapack3 3.12.0-4 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.18+dfsg-3+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblsan0:amd64 liblsan0 14.2.0-11 install ok installed libltdl7:amd64 libltdl7 2.5.4-1 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.7-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-12 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libnuma1:amd64 libnuma1 2.0.18-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.55.0+ds-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.55.0+ds-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.55.0+ds-3 install ok installed libpaper-utils libpaper-utils 2.2.5-0.2 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.2 install ok installed libpathplan4:amd64 libpathplan4 12.2.1-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libperl5.40:amd64 libperl5.40 5.40.0-8 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.44-3 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-6 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.7-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.8-3 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.8-3 install ok installed libquadmath0:amd64 libquadmath0 14.2.0-11 install ok installed libraqm0:amd64 libraqm0 0.10.2-1 install ok installed librav1e0.7:amd64 librav1e0.7 0.7.1-7+b3 install ok installed libreadline8t64:amd64 libreadline8t64 8.3~alpha1-2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-8 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-8 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0~rc1-0.1~exp1 install ok installed libsm6:amd64 libsm6 2:1.2.4-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-12 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2~rc1-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.0-1 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-11 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-11 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.8.3+dfsg-2 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 257-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.15+dfsg-2 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.6.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1 install ok installed libtk8.6:amd64 libtk8.6 8.6.15-1 install ok installed libtsan2:amd64 libtsan2 14.2.0-11 install ok installed libubsan1:amd64 libubsan1 14.2.0-11 install ok installed libudev1:amd64 libudev1 257-2 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-12 install ok installed libuv1t64:amd64 libuv1t64 1.48.0-7 install ok installed libwebp7:amd64 libwebp7 1.5.0~rc1-0.1~exp1 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2 install ok installed libx11-data libx11-data 2:1.8.10-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxdot4:amd64 libxdot4 12.2.1-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b2 install ok installed libxft2:amd64 libxft2 2.3.6-1+b3 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.2+b1 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b3 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.39-0exp1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b2 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1+b2 install ok installed libyuv0:amd64 libyuv0 0.0.1898.20241125-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed linux-libc-dev linux-libc-dev 6.12.5-1 install ok installed littler littler 0.3.20-2 install ok installed login login 1:4.16.0-2+really2.40.2-12 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2~rc1-2 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40.2-12 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed node-bootstrap-sass node-bootstrap-sass 3.4.3-2 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-5 install ok installed node-normalize.css node-normalize.css 8.0.1-5 install ok installed openssl openssl 3.4.0-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.0-1 install ok installed pandoc pandoc 3.1.11.1+ds-2 install ok installed pandoc-data pandoc-data 3.1.11.1-3 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl perl 5.40.0-8 install ok installed perl-base perl-base 5.40.0-8 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.0-8 install ok installed procps procps 2:4.0.4-6 install ok installed python3 python3 3.12.7-1 install ok installed python3-arcp python3-arcp 0.2.1-7 install ok installed python3-argcomplete python3-argcomplete 3.5.2-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-cachecontrol python3-cachecontrol 0.14.1-1 install ok installed python3-certifi python3-certifi 2024.8.30+dfsg-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.0-1+b1 install ok installed python3-coloredlogs python3-coloredlogs 15.0.1-1 install ok installed python3-cwl-utils python3-cwl-utils 0.36-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-filelock python3-filelock 3.16.1-1 install ok installed python3-humanfriendly python3-humanfriendly 10.0-6 install ok installed python3-idna python3-idna 3.8-2 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.0-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jaraco.text python3-jaraco.text 4.0.0-1 install ok installed python3-lxml:amd64 python3-lxml 5.3.0-1+b1 install ok installed python3-minimal python3-minimal 3.12.7-1 install ok installed python3-mistune python3-mistune 3.0.2-2 install ok installed python3-more-itertools python3-more-itertools 10.5.0-1 install ok installed python3-msgpack python3-msgpack 1.0.3-3+b3 install ok installed python3-mypy-extensions python3-mypy-extensions 1.0.0-1 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-packaging python3-packaging 24.2-1 install ok installed python3-pkg-resources python3-pkg-resources 75.6.0-1 install ok installed python3-prov python3-prov 2.0.1-1 install ok installed python3-psutil python3-psutil 5.9.8-2 install ok installed python3-pydot python3-pydot 2.0.0-3 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-rdflib python3-rdflib 7.1.1-2 install ok installed python3-requests python3-requests 2.32.3+dfsg-2 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.18.6+ds-3 install ok installed python3-ruamel.yaml.clib:amd64 python3-ruamel.yaml.clib 0.2.8+ds-2+b1 install ok installed python3-schema-salad python3-schema-salad 8.8.20241206093842-1 install ok installed python3-setuptools python3-setuptools 75.6.0-1 install ok installed python3-spython python3-spython 0.3.13-2 install ok installed python3-typeguard python3-typeguard 4.4.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-urllib3 python3-urllib3 2.2.3-4 install ok installed python3-zipp python3-zipp 3.21.0-1 install ok installed python3.12 python3.12 3.12.8-3 install ok installed python3.12-minimal python3.12-minimal 3.12.8-3 install ok installed r-base-core r-base-core 4.4.2-1 install ok installed r-bioc-basilisk r-bioc-basilisk 1.18.0+ds-1 install ok installed r-bioc-basilisk.utils r-bioc-basilisk.utils 1.18.0+ds-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.40.0-1 install ok installed r-bioc-dir.expiry r-bioc-dir.expiry 1.14.0+ds-1 install ok installed r-bioc-rcwl r-bioc-rcwl 1.22.0+ds-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.44.0+dfsg-1 install ok installed r-cran-backports r-cran-backports 1.5.0-2 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-3 install ok installed r-cran-base64url r-cran-base64url 1.4-2+b1 install ok installed r-cran-batchtools r-cran-batchtools 0.9.17+dfsg-1 install ok installed r-cran-bh r-cran-bh 1.84.0-1 install ok installed r-cran-bit r-cran-bit 4.0.5-1 install ok installed r-cran-bit64 r-cran-bit64 4.0.5-1 install ok installed r-cran-brew r-cran-brew 1.0-10-1 install ok installed r-cran-bslib r-cran-bslib 0.7.0+dfsg-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-1 install ok installed r-cran-checkmate r-cran-checkmate 2.3.2-1 install ok installed r-cran-cli r-cran-cli 3.6.3-1 install ok installed r-cran-clipr r-cran-clipr 0.8.0-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-colorspace r-cran-colorspace 2.1-1+dfsg-1 install ok installed r-cran-commonmark r-cran-commonmark 1.9.2-2 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.0-1 install ok installed r-cran-crayon r-cran-crayon 1.5.2-1 install ok installed r-cran-data.table r-cran-data.table 1.16.2+dfsg-1 install ok installed r-cran-diagrammer r-cran-diagrammer 1.0.11+ds-2 install ok installed r-cran-digest r-cran-digest 0.6.37-1 install ok installed r-cran-dplyr r-cran-dplyr 1.1.4-4 install ok installed r-cran-evaluate r-cran-evaluate 1.0.0-1 install ok installed r-cran-fansi r-cran-fansi 1.0.5-1 install ok installed r-cran-farver r-cran-farver 2.1.2-1 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-1 install ok installed r-cran-filelock r-cran-filelock 1.0.3-1 install ok installed r-cran-fontawesome r-cran-fontawesome 0.5.2-1 install ok installed r-cran-formatr r-cran-formatr 1.14-2 install ok installed r-cran-fs r-cran-fs 1.6.4+dfsg-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-generics r-cran-generics 0.1.3-1 install ok installed r-cran-glue r-cran-glue 1.8.0-1 install ok installed r-cran-here r-cran-here 1.0.1-2 install ok installed r-cran-highr r-cran-highr 0.11+dfsg-1 install ok installed r-cran-hms r-cran-hms 1.1.3-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.8.1-1 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.6.4+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.6.15+dfsg-1 install ok installed r-cran-igraph r-cran-igraph 2.0.3-1 install ok installed r-cran-jquerylib r-cran-jquerylib 0.1.4+dfsg-4 install ok installed r-cran-jsonlite r-cran-jsonlite 1.8.9+dfsg-1 install ok installed r-cran-knitr r-cran-knitr 1.49+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.4.3-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-later r-cran-later 1.3.2+dfsg-1 install ok installed r-cran-lattice r-cran-lattice 0.22-6-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.20-2 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-matrix r-cran-matrix 1.7-1-1 install ok installed r-cran-memoise r-cran-memoise 2.0.1-1 install ok installed r-cran-mime r-cran-mime 0.12-2 install ok installed r-cran-munsell r-cran-munsell 0.5.1-1 install ok installed r-cran-pillar r-cran-pillar 1.9.0+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-png r-cran-png 0.1-8-1+b1 install ok installed r-cran-prettyunits r-cran-prettyunits 1.2.0-1 install ok installed r-cran-progress r-cran-progress 1.2.3-1 install ok installed r-cran-promises r-cran-promises 1.3.0+dfsg-1 install ok installed r-cran-purrr r-cran-purrr 1.0.2-1 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.8.2-1 install ok installed r-cran-r.oo r-cran-r.oo 1.26.0-1 install ok installed r-cran-r.utils r-cran-r.utils 2.12.3-1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.3-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.13-1-1 install ok installed r-cran-rcpptoml r-cran-rcpptoml 0.2.2+dfsg-1 install ok installed r-cran-readr r-cran-readr 2.1.5-1 install ok installed r-cran-reticulate r-cran-reticulate 1.39.0+dfsg-1 install ok installed r-cran-rlang r-cran-rlang 1.1.4-1 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.28+dfsg-1 install ok installed r-cran-rprojroot r-cran-rprojroot 2.0.4-1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.17.1-1 install ok installed r-cran-sass r-cran-sass 0.4.9+dfsg-1 install ok installed r-cran-scales r-cran-scales 1.3.0-1 install ok installed r-cran-shiny r-cran-shiny 1.9.1+dfsg-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-1-1 install ok installed r-cran-stringi r-cran-stringi 1.8.4-1 install ok installed r-cran-stringr r-cran-stringr 1.5.1-1 install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-2 install ok installed r-cran-tidyr r-cran-tidyr 1.3.1-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-1 install ok installed r-cran-tinytex r-cran-tinytex 0.53-1 install ok installed r-cran-tzdb r-cran-tzdb 0.4.0-2 install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1 install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.2-2 install ok installed r-cran-visnetwork r-cran-visnetwork 2.1.2+ds-1 install ok installed r-cran-vroom r-cran-vroom 1.6.5-1 install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-1 install ok installed r-cran-xfun r-cran-xfun 0.49+dfsg-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-4-2 install ok installed r-cran-yaml r-cran-yaml 2.3.10-1 install ok installed readline-common readline-common 8.3~alpha1-2 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-4 install ok installed ucf ucf 3.0045 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-12 install ok installed x11-common x11-common 1:7.7+23.1 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed zip zip 3.0-14 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 2m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libssl3t64:amd64=3.3.2-2', 'openssl-provider-legacy=3.3.2-2', 'ca-certificates-', 'cwl-upgrader-', 'cwltool-', 'fontconfig-', 'fontconfig-config-', 'fonts-dejavu-core-', 'fonts-dejavu-mono-', 'fonts-font-awesome-', 'fonts-glyphicons-halflings-', 'fonts-mathjax-', 'graphviz-', 'javascript-common-', 'libabsl20230802:amd64-', 'libamd3:amd64-', 'libaom3:amd64-', 'libasan8:amd64-', 'libatomic1:amd64-', 'libavif16:amd64-', 'libblas3:amd64-', 'libboost-dev:amd64-', 'libboost1.83-dev:amd64-', 'libbrotli1:amd64-', 'libc-dev-bin-', 'libc6-dev:amd64-', 'libcairo2:amd64-', 'libcdt5:amd64-', 'libcgraph6:amd64-', 'libcolamd3:amd64-', 'libcrypt-dev:amd64-', 'libcurl4t64:amd64-', 'libdatrie1:amd64-', 'libdav1d7:amd64-', 'libde265-0:amd64-', 'libdeflate0:amd64-', 'libexpat1:amd64-', 'libfontconfig1:amd64-', 'libfreetype6:amd64-', 'libfribidi0:amd64-', 'libgav1-1:amd64-', 'libgcc-14-dev:amd64-', 'libgd3:amd64-', 'libgdbm-compat4t64:amd64-', 'libgdbm6t64:amd64-', 'libgfortran5:amd64-', 'libglib2.0-0t64:amd64-', 'libglpk40:amd64-', 'libgomp1:amd64-', 'libgraphite2-3:amd64-', 'libgssapi-krb5-2:amd64-', 'libgvc6:amd64-', 'libgvplugin-gd:amd64-', 'libgvpr2:amd64-', 'libharfbuzz0b:amd64-', 'libheif-plugin-dav1d:amd64-', 'libheif-plugin-libde265:amd64-', 'libheif1:amd64-', 'libhwasan0:amd64-', 'libice6:amd64-', 'libicu72:amd64-', 'libimagequant0:amd64-', 'libitm1:amd64-', 'libjbig0:amd64-', 'libjpeg62-turbo:amd64-', 'libjs-bootstrap-', 'libjs-bootstrap4-', 'libjs-d3-', 'libjs-es5-shim-', 'libjs-highlight.js-', 'libjs-jquery-', 'libjs-jquery-datatables-', 'libjs-jquery-selectize.js-', 'libjs-jquery-ui-', 'libjs-json-', 'libjs-mathjax-', 'libjs-microplugin.js-', 'libjs-modernizr-', 'libjs-popper.js-', 'libjs-prettify-', 'libjs-sifter.js-', 'libjs-twitter-bootstrap-datepicker-', 'libk5crypto3:amd64-', 'libkeyutils1:amd64-', 'libkrb5-3:amd64-', 'libkrb5support0:amd64-', 'liblapack3:amd64-', 'libldap-2.5-0:amd64-', 'liblerc4:amd64-', 'liblsan0:amd64-', 'libltdl7:amd64-', 'liblua5.4-0:amd64-', 'libncursesw6:amd64-', 'libnghttp2-14:amd64-', 'libnsl2:amd64-', 'libnuma1:amd64-', 'libpango-1.0-0:amd64-', 'libpangocairo-1.0-0:amd64-', 'libpangoft2-1.0-0:amd64-', 'libpaper-utils-', 'libpaper2:amd64-', 'libpathplan4:amd64-', 'libperl5.40:amd64-', 'libpixman-1-0:amd64-', 'libpng16-16t64:amd64-', 'libproc2-0:amd64-', 'libpsl5t64:amd64-', 'libpython3-stdlib:amd64-', 'libpython3.12-minimal:amd64-', 'libpython3.12-stdlib:amd64-', 'libquadmath0:amd64-', 'libraqm0:amd64-', 'librav1e0.7:amd64-', 'libreadline8t64:amd64-', 'librtmp1:amd64-', 'libsasl2-2:amd64-', 'libsasl2-modules-db:amd64-', 'libsharpyuv0:amd64-', 'libsm6:amd64-', 'libsqlite3-0:amd64-', 'libssh2-1t64:amd64-', 'libstdc++-14-dev:amd64-', 'libsuitesparseconfig7:amd64-', 'libsvtav1enc2:amd64-', 'libtcl8.6:amd64-', 'libthai-data-', 'libthai0:amd64-', 'libtiff6:amd64-', 'libtirpc-common-', 'libtirpc3t64:amd64-', 'libtk8.6:amd64-', 'libtsan2:amd64-', 'libubsan1:amd64-', 'libuv1t64:amd64-', 'libwebp7:amd64-', 'libx11-6:amd64-', 'libx11-data-', 'libxau6:amd64-', 'libxcb-render0:amd64-', 'libxcb-shm0:amd64-', 'libxcb1:amd64-', 'libxdmcp6:amd64-', 'libxdot4:amd64-', 'libxext6:amd64-', 'libxft2:amd64-', 'libxml2:amd64-', 'libxpm4:amd64-', 'libxrender1:amd64-', 'libxslt1.1:amd64-', 'libxss1:amd64-', 'libxt6t64:amd64-', 'libyaml-0-2:amd64-', 'libyuv0:amd64-', 'linux-libc-dev-', 'littler-', 'media-types-', 'netbase-', 'node-bootstrap-sass-', 'node-html5shiv-', 'node-normalize.css-', 'openssl-', 'pandoc-', 'pandoc-data-', 'perl-', 'perl-modules-5.40-', 'procps-', 'python3-', 'python3-arcp-', 'python3-argcomplete-', 'python3-autocommand-', 'python3-cachecontrol-', 'python3-certifi-', 'python3-chardet-', 'python3-charset-normalizer-', 'python3-coloredlogs-', 'python3-cwl-utils-', 'python3-dateutil-', 'python3-filelock-', 'python3-humanfriendly-', 'python3-idna-', 'python3-inflect-', 'python3-jaraco.context-', 'python3-jaraco.functools-', 'python3-jaraco.text-', 'python3-lxml:amd64-', 'python3-minimal-', 'python3-mistune-', 'python3-more-itertools-', 'python3-msgpack-', 'python3-mypy-extensions-', 'python3-networkx-', 'python3-packaging-', 'python3-pkg-resources-', 'python3-prov-', 'python3-psutil-', 'python3-pydot-', 'python3-pyparsing-', 'python3-rdflib-', 'python3-requests-', 'python3-ruamel.yaml-', 'python3-ruamel.yaml.clib:amd64-', 'python3-schema-salad-', 'python3-setuptools-', 'python3-spython-', 'python3-typeguard-', 'python3-typing-extensions-', 'python3-urllib3-', 'python3-zipp-', 'python3.12-', 'python3.12-minimal-', 'r-base-core-', 'r-bioc-basilisk-', 'r-bioc-basilisk.utils-', 'r-bioc-biocgenerics-', 'r-bioc-biocparallel-', 'r-bioc-dir.expiry-', 'r-bioc-s4vectors-', 'r-cran-backports-', 'r-cran-base64enc-', 'r-cran-base64url-', 'r-cran-batchtools-', 'r-cran-bh-', 'r-cran-bit-', 'r-cran-bit64-', 'r-cran-brew-', 'r-cran-bslib-', 'r-cran-cachem-', 'r-cran-checkmate-', 'r-cran-cli-', 'r-cran-clipr-', 'r-cran-codetools-', 'r-cran-colorspace-', 'r-cran-commonmark-', 'r-cran-cpp11-', 'r-cran-crayon-', 'r-cran-data.table-', 'r-cran-diagrammer-', 'r-cran-digest-', 'r-cran-dplyr-', 'r-cran-evaluate-', 'r-cran-fansi-', 'r-cran-farver-', 'r-cran-fastmap-', 'r-cran-filelock-', 'r-cran-fontawesome-', 'r-cran-formatr-', 'r-cran-fs-', 'r-cran-futile.logger-', 'r-cran-futile.options-', 'r-cran-generics-', 'r-cran-glue-', 'r-cran-here-', 'r-cran-highr-', 'r-cran-hms-', 'r-cran-htmltools-', 'r-cran-htmlwidgets-', 'r-cran-httpuv-', 'r-cran-igraph-', 'r-cran-jquerylib-', 'r-cran-jsonlite-', 'r-cran-knitr-', 'r-cran-labeling-', 'r-cran-lambda.r-', 'r-cran-later-', 'r-cran-lattice-', 'r-cran-lifecycle-', 'r-cran-littler-', 'r-cran-magrittr-', 'r-cran-matrix-', 'r-cran-memoise-', 'r-cran-mime-', 'r-cran-munsell-', 'r-cran-pillar-', 'r-cran-pkgconfig-', 'r-cran-pkgkitten-', 'r-cran-png-', 'r-cran-prettyunits-', 'r-cran-progress-', 'r-cran-promises-', 'r-cran-purrr-', 'r-cran-r.methodss3-', 'r-cran-r.oo-', 'r-cran-r.utils-', 'r-cran-r6-', 'r-cran-rappdirs-', 'r-cran-rcolorbrewer-', 'r-cran-rcpp-', 'r-cran-rcpptoml-', 'r-cran-readr-', 'r-cran-reticulate-', 'r-cran-rlang-', 'r-cran-rmarkdown-', 'r-cran-rprojroot-', 'r-cran-rstudioapi-', 'r-cran-sass-', 'r-cran-scales-', 'r-cran-shiny-', 'r-cran-snow-', 'r-cran-sourcetools-', 'r-cran-stringi-', 'r-cran-stringr-', 'r-cran-tibble-', 'r-cran-tidyr-', 'r-cran-tidyselect-', 'r-cran-tinytex-', 'r-cran-tzdb-', 'r-cran-utf8-', 'r-cran-vctrs-', 'r-cran-viridislite-', 'r-cran-visnetwork-', 'r-cran-vroom-', 'r-cran-withr-', 'r-cran-xfun-', 'r-cran-xtable-', 'r-cran-yaml-', 'readline-common-', 'rpcsvc-proto-', 'sensible-utils-', 'ucf-', 'unzip-', 'x11-common-', 'xdg-utils-', 'zip-', 'r-bioc-rcwl-'] 2m16.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax graphviz javascript-common libabsl20230802 libamd3 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt5 libcgraph6 libcolamd3 libcrypt-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-14-dev libgd3 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgvc6 libgvplugin-gd libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu72 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblerc4 liblsan0 libltdl7 liblua5.4-0 libncursesw6 libnghttp2-14 libnsl2 libnuma1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0 libraqm0 librav1e0.7 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-14-dev libsuitesparseconfig7 libsvtav1enc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev littler media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data perl perl-modules-5.40 procps python3 python3-arcp python3-argcomplete python3-autocommand python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-lxml python3-minimal python3-mistune python3-more-itertools python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-prov python3-psutil python3-pydot python3-pyparsing python3-rdflib python3-requests python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-setuptools python3-spython python3-typeguard python3-typing-extensions python3-urllib3 python3-zipp python3.12 python3.12-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-rcwl r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-munsell r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip The following packages will be DOWNGRADED: libssl3t64 openssl-provider-legacy 0 upgraded, 0 newly installed, 2 downgraded, 322 to remove and 0 not upgraded. Need to get 2569 kB of archives. After this operation, 1037 MB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.3.2-2 [298 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.3.2-2 [2271 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2569 kB in 0s (6517 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57150 files and directories currently installed.) Removing r-bioc-rcwl (1.22.0+ds-1) ... Removing cwltool (3.1.20241112140730-1) ... Removing python3-cwl-utils (0.36-1) ... Removing r-bioc-basilisk (1.18.0+ds-1) ... Removing r-cran-reticulate (1.39.0+dfsg-1) ... Removing r-bioc-s4vectors (0.44.0+dfsg-1) ... Removing cwl-upgrader (1.2.11-1) ... Removing python3-pydot (2.0.0-3) ... Removing graphviz (12.2.1-1) ... Removing libgvplugin-gd:amd64 (12.2.1-1) ... Removing libgd3:amd64 (2.3.3-12+b1) ... Removing r-cran-diagrammer (1.0.11+ds-2) ... Removing r-cran-visnetwork (2.1.2+ds-1) ... Removing r-cran-htmlwidgets (1.6.4+dfsg-1) ... Removing r-cran-rmarkdown (2.28+dfsg-1) ... Removing r-cran-shiny (1.9.1+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing r-cran-knitr (1.49+dfsg-1) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing r-cran-bslib (0.7.0+dfsg-1) ... Removing libjs-bootstrap4 (4.6.1+dfsg1-4) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (11+nmu1) ... Removing libavif16:amd64 (1.1.1-1) ... Removing libgav1-1:amd64 (0.19.0-2+b2) ... Removing libabsl20230802:amd64 (20230802.1-4) ... Removing r-cran-igraph (2.0.3-1) ... Removing libglpk40:amd64 (5.0-1+b2) ... Removing libamd3:amd64 (1:7.8.3+dfsg-2) ... Removing libaom3:amd64 (3.11.0-1) ... Removing r-bioc-biocparallel (1.40.0-1) ... Removing r-cran-bh (1.84.0-1) ... Removing libboost-dev:amd64 (1.83.0.2+b2) ... Removing libboost1.83-dev:amd64 (1.83.0-4) ... Removing libstdc++-14-dev:amd64 (14.2.0-11) ... Removing libgcc-14-dev:amd64 (14.2.0-11) ... Removing libasan8:amd64 (14.2.0-11) ... Removing libraqm0:amd64 (0.10.2-1) ... Removing libc6-dev:amd64 (2.40-4) ... Removing libc-dev-bin (2.40-4) ... Removing libgvpr2:amd64 (12.2.1-1) ... Removing libcolamd3:amd64 (1:7.8.3+dfsg-2) ... Removing libcrypt-dev:amd64 (1:4.4.36-5) ... Removing python3-setuptools (75.6.0-1) ... Removing python3-prov (2.0.1-1) ... Removing python3-coloredlogs (15.0.1-1) ... Removing python3-humanfriendly (10.0-6) ... Removing python3-psutil (5.9.8-2) ... Removing python3-networkx (3.2.1-5) ... Removing python3-jaraco.text (4.0.0-1) ... Removing libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... Removing r-cran-batchtools (0.9.17+dfsg-1) ... Removing r-cran-data.table (1.16.2+dfsg-1) ... Removing libhwasan0:amd64 (14.2.0-11) ... Removing r-cran-tidyr (1.3.1-1) ... Removing r-cran-stringr (1.5.1-1) ... Removing r-cran-stringi (1.8.4-1) ... Removing python3-lxml:amd64 (5.3.0-1+b1) ... Removing libxslt1.1:amd64 (1.1.39-0exp1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libitm1:amd64 (14.2.0-11) ... Removing libyuv0:amd64 (0.0.1898.20241125-1) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.6.7-2) ... Removing r-cran-highr (0.11+dfsg-1) ... Removing libjs-highlight.js (9.18.5+dfsg1-2) ... Removing r-cran-jquerylib (0.1.4+dfsg-4) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-datatables (1.11.5+dfsg-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-json (0~20221030+~1.0.8-1) ... Removing libjs-microplugin.js (0.0.3+dfsg-1.1) ... Removing libjs-modernizr (3.13.0-0.1) ... Removing libjs-prettify (2015.12.04+dfsg-1.1) ... Removing libjs-sifter.js (0.6.0+dfsg-3) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing liblsan0:amd64 (14.2.0-11) ... Removing pandoc (3.1.11.1+ds-2) ... Removing liblua5.4-0:amd64 (5.4.7-1+b1) ... Removing libnuma1:amd64 (2.0.18-1+b1) ... Removing r-cran-png (0.1-8-1+b1) ... Removing libquadmath0:amd64 (14.2.0-11) ... Removing librav1e0.7:amd64 (0.7.1-7+b3) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libtsan2:amd64 (14.2.0-11) ... Removing libubsan1:amd64 (14.2.0-11) ... Removing r-cran-httpuv (1.6.15+dfsg-1) ... Removing r-cran-sass (0.4.9+dfsg-1) ... Removing r-cran-fs (1.6.4+dfsg-1) ... Removing libuv1t64:amd64 (1.48.0-7) ... Removing libxpm4:amd64 (1:3.5.17-1+b2) ... Removing libyaml-0-2:amd64 (0.2.5-1+b2) ... Removing linux-libc-dev (6.12.5-1) ... Removing r-cran-readr (2.1.5-1) ... Removing r-cran-rcpptoml (0.2.2+dfsg-1) ... Removing littler (0.3.20-2) ... Removing node-bootstrap-sass (3.4.3-2) ... Removing node-html5shiv (3.7.3+dfsg-5) ... Removing node-normalize.css (8.0.1-5) ... Removing pandoc-data (3.1.11.1-3) ... Removing python3-arcp (0.2.1-7) ... Removing python3-argcomplete (3.5.2-1) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-packaging (24.2-1) ... Removing python3-spython (0.3.13-2) ... Removing python3-zipp (3.21.0-1) ... Removing r-bioc-basilisk.utils (1.18.0+ds-1) ... Removing r-bioc-dir.expiry (1.14.0+ds-1) ... Removing r-bioc-biocgenerics (0.52.0-1) ... Removing r-cran-checkmate (2.3.2-1) ... Removing r-cran-base64url (1.4-2+b1) ... Removing r-cran-backports (1.5.0-2) ... Removing r-cran-fontawesome (0.5.2-1) ... Removing r-cran-htmltools (0.5.8.1-1) ... Removing r-cran-base64enc (0.1-3-3) ... Removing r-cran-vroom (1.6.5-1) ... Removing r-cran-bit64 (4.0.5-1) ... Removing r-cran-bit (4.0.5-1) ... Removing r-cran-brew (1.0-10-1) ... Removing r-cran-memoise (2.0.1-1) ... Removing r-cran-cachem (1.1.0-1) ... Removing r-cran-dplyr (1.1.4-4) ... Removing r-cran-tidyselect (1.2.1+dfsg-1) ... Removing r-cran-tibble (3.2.1+dfsg-2) ... Removing r-cran-scales (1.3.0-1) ... Removing r-cran-clipr (0.8.0-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-munsell (0.5.1-1) ... Removing r-cran-colorspace (2.1-1+dfsg-1) ... Removing r-cran-commonmark (1.9.2-2) ... Removing r-cran-tzdb (0.4.0-2) ... Removing r-cran-cpp11 (0.5.0-1) ... Removing r-cran-progress (1.2.3-1) ... Removing r-cran-crayon (1.5.2-1) ... Removing r-cran-digest (0.6.37-1) ... Removing r-cran-evaluate (1.0.0-1) ... Removing r-cran-pillar (1.9.0+dfsg-1) ... Removing r-cran-fansi (1.0.5-1) ... Removing r-cran-farver (2.1.2-1) ... Removing r-cran-promises (1.3.0+dfsg-1) ... Removing r-cran-fastmap (1.2.0-1) ... Removing r-cran-filelock (1.0.3-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.14-2) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-generics (0.1.3-1) ... Removing r-cran-purrr (1.0.2-1) ... Removing r-cran-here (1.0.1-2) ... Removing r-cran-hms (1.1.3-1) ... Removing r-cran-jsonlite (1.8.9+dfsg-1) ... Removing r-cran-labeling (0.4.3-1) ... Removing r-cran-later (1.3.2+dfsg-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mime (0.12-2) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-prettyunits (1.2.0-1) ... Removing r-cran-r.utils (2.12.3-1) ... Removing r-cran-r.oo (1.26.0-1) ... Removing r-cran-r.methodss3 (1.8.2-1) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-rappdirs (0.3.3-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing r-cran-rprojroot (2.0.4-1) ... Removing r-cran-rstudioapi (0.17.1-1) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-cran-sourcetools (0.1.7-1-1) ... Removing r-cran-tinytex (0.53-1) ... Removing r-cran-utf8 (1.2.4-1) ... Removing r-cran-viridislite (0.4.2-2) ... Removing r-cran-withr (3.0.2+dfsg-1) ... Removing r-cran-xfun (0.49+dfsg-1) ... Removing r-cran-xtable (1:1.8-4-2) ... Removing r-cran-yaml (2.3.10-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing python3-schema-salad (8.8.20241206093842-1) ... Removing python3-cachecontrol (0.14.1-1) ... Removing python3-requests (2.32.3+dfsg-2) ... Removing r-cran-matrix (1.7-1-1) ... Removing libgvc6:amd64 (12.2.1-1) ... Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing libcgraph6:amd64 (12.2.1-1) ... Removing libcdt5:amd64 (12.2.1-1) ... Removing python3-ruamel.yaml (0.18.6+ds-3) ... Removing python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2+b1) ... Removing python3-rdflib (7.1.1-2) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libltdl7:amd64 (2.5.4-1) ... Removing libpathplan4:amd64 (12.2.1-1) ... Removing libxdot4:amd64 (12.2.1-1) ... Removing r-cran-rcpp (1.0.13-1-1) ... Removing python3-certifi (2024.8.30+dfsg-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.4.0-1+b1) ... Removing python3-filelock (3.16.1-1) ... Removing python3-idna (3.8-2) ... Removing python3-mistune (3.0.2-2) ... Removing python3-msgpack (1.0.3-3+b3) ... Removing python3-mypy-extensions (1.0.0-1) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-urllib3 (2.2.3-4) ... Removing r-cran-vctrs (0.6.5-1) ... Removing r-cran-lifecycle (1.0.4+dfsg-1) ... Removing r-cran-glue (1.8.0-1) ... Removing r-cran-lattice (0.22-6-1) ... Removing r-cran-littler (0.3.20-2) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-rlang (1.1.4-1) ... Removing python3-pkg-resources (75.6.0-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.1-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-jaraco.context (6.0.0-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.5.0-1) ... Removing python3-typing-extensions (4.12.2-2) ... Removing r-cran-cli (3.6.3-1) ... Removing r-base-core (4.4.2-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... Removing libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... Removing libpango-1.0-0:amd64 (1.55.0+ds-3) ... Removing fontconfig (2.15.0-1.1+b1) ... Removing libtk8.6:amd64 (8.6.15-1) ... Removing libxft2:amd64 (2.3.6-1+b3) ... Removing libharfbuzz0b:amd64 (10.1.0-1) ... Removing libglib2.0-0t64:amd64 (2.83.2-1) ... Removing libatomic1:amd64 (14.2.0-11) ... Removing liblapack3:amd64 (3.12.0-4) ... Removing libblas3:amd64 (3.12.0-4) ... Removing libcairo2:amd64 (1.18.2-2) ... Removing libcurl4t64:amd64 (8.11.1-1) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-3+b1) ... Removing libtiff6:amd64 (4.6.0-2) ... Removing libdeflate0:amd64 (1.22-1) ... Removing python3 (3.12.7-1) ... Removing python3.12 (3.12.8-3) ... Removing python3-minimal (3.12.7-1) ... Removing python3.12-minimal (3.12.8-3) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing ucf (3.0045) ... Removing perl (5.40.0-8) ... Removing libperl5.40:amd64 (5.40.0-8) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libgfortran5:amd64 (14.2.0-11) ... Removing libgomp1:amd64 (14.2.0-11) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libpython3-stdlib:amd64 (3.12.7-1) ... Removing libpython3.12-stdlib:amd64 (3.12.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Removing libsm6:amd64 (2:1.2.4-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libicu72:amd64 (72.1-5+b1) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing procps (2:4.0.4-6) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libpaper-utils (2.2.5-0.2) ... Removing libpaper2:amd64 (2.2.5-0.2) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libproc2-0:amd64 (2:4.0.4-6) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libpython3.12-minimal:amd64 (3.12.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3~alpha1-2) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Removing libwebp7:amd64 (1.5.0~rc1-0.1~exp1) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtcl8.6:amd64 (8.6.15+dfsg-2) ... Removing libthai-data (0.1.29-2) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing libxss1:amd64 (1:1.2.3-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b3) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b2) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing openssl (3.4.0-1) ... Removing perl-modules-5.40 (5.40.0-8) ... Removing readline-common (8.3~alpha1-2) ... Removing sensible-utils (0.0.24) ... Removing unzip (6.0-28) ... Removing x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-14) ... Removing libfontconfig1:amd64 (2.15.0-1.1+b1) ... Removing fontconfig-config (2.15.0-1.1+b1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libpng16-16t64:amd64 (1.6.44-3) ... Removing libx11-6:amd64 (2:1.8.10-2) ... Removing libx11-data (2:1.8.10-2) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libheif1:amd64 (1.19.3-1) ... Removing libheif-plugin-libde265:amd64 (1.19.3-1) ... Removing libde265-0:amd64 (1.0.15-1+b2) ... Removing libsharpyuv0:amd64 (1.5.0~rc1-0.1~exp1) ... Removing libheif-plugin-dav1d:amd64 (1.19.3-1) ... Removing libdav1d7:amd64 (1.5.0-1+b1) ... dpkg: warning: downgrading openssl-provider-legacy from 3.4.0-1 to 3.3.2-2 (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5206 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.3.2-2_amd64.deb ... Unpacking openssl-provider-legacy (3.3.2-2) over (3.4.0-1) ... Setting up openssl-provider-legacy (3.3.2-2) ... dpkg: warning: downgrading libssl3t64:amd64 from 3.4.0-1 to 3.3.2-2 (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5206 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.3.2-2_amd64.deb ... Unpacking libssl3t64:amd64 (3.3.2-2) over (3.4.0-1) ... Setting up libssl3t64:amd64 (3.3.2-2) ... Processing triggers for libc-bin (2.40-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. 2m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libssl3t64:amd64=3.3.2-2', 'openssl-provider-legacy=3.3.2-2', 'ca-certificates-', 'cwl-upgrader-', 'cwltool-', 'fontconfig-', 'fontconfig-config-', 'fonts-dejavu-core-', 'fonts-dejavu-mono-', 'fonts-font-awesome-', 'fonts-glyphicons-halflings-', 'fonts-mathjax-', 'graphviz-', 'javascript-common-', 'libabsl20230802:amd64-', 'libamd3:amd64-', 'libaom3:amd64-', 'libasan8:amd64-', 'libatomic1:amd64-', 'libavif16:amd64-', 'libblas3:amd64-', 'libboost-dev:amd64-', 'libboost1.83-dev:amd64-', 'libbrotli1:amd64-', 'libc-dev-bin-', 'libc6-dev:amd64-', 'libcairo2:amd64-', 'libcdt5:amd64-', 'libcgraph6:amd64-', 'libcolamd3:amd64-', 'libcrypt-dev:amd64-', 'libcurl4t64:amd64-', 'libdatrie1:amd64-', 'libdav1d7:amd64-', 'libde265-0:amd64-', 'libdeflate0:amd64-', 'libexpat1:amd64-', 'libfontconfig1:amd64-', 'libfreetype6:amd64-', 'libfribidi0:amd64-', 'libgav1-1:amd64-', 'libgcc-14-dev:amd64-', 'libgd3:amd64-', 'libgdbm-compat4t64:amd64-', 'libgdbm6t64:amd64-', 'libgfortran5:amd64-', 'libglib2.0-0t64:amd64-', 'libglpk40:amd64-', 'libgomp1:amd64-', 'libgraphite2-3:amd64-', 'libgssapi-krb5-2:amd64-', 'libgvc6:amd64-', 'libgvplugin-gd:amd64-', 'libgvpr2:amd64-', 'libharfbuzz0b:amd64-', 'libheif-plugin-dav1d:amd64-', 'libheif-plugin-libde265:amd64-', 'libheif1:amd64-', 'libhwasan0:amd64-', 'libice6:amd64-', 'libicu72:amd64-', 'libimagequant0:amd64-', 'libitm1:amd64-', 'libjbig0:amd64-', 'libjpeg62-turbo:amd64-', 'libjs-bootstrap-', 'libjs-bootstrap4-', 'libjs-d3-', 'libjs-es5-shim-', 'libjs-highlight.js-', 'libjs-jquery-', 'libjs-jquery-datatables-', 'libjs-jquery-selectize.js-', 'libjs-jquery-ui-', 'libjs-json-', 'libjs-mathjax-', 'libjs-microplugin.js-', 'libjs-modernizr-', 'libjs-popper.js-', 'libjs-prettify-', 'libjs-sifter.js-', 'libjs-twitter-bootstrap-datepicker-', 'libk5crypto3:amd64-', 'libkeyutils1:amd64-', 'libkrb5-3:amd64-', 'libkrb5support0:amd64-', 'liblapack3:amd64-', 'libldap-2.5-0:amd64-', 'liblerc4:amd64-', 'liblsan0:amd64-', 'libltdl7:amd64-', 'liblua5.4-0:amd64-', 'libncursesw6:amd64-', 'libnghttp2-14:amd64-', 'libnsl2:amd64-', 'libnuma1:amd64-', 'libpango-1.0-0:amd64-', 'libpangocairo-1.0-0:amd64-', 'libpangoft2-1.0-0:amd64-', 'libpaper-utils-', 'libpaper2:amd64-', 'libpathplan4:amd64-', 'libperl5.40:amd64-', 'libpixman-1-0:amd64-', 'libpng16-16t64:amd64-', 'libproc2-0:amd64-', 'libpsl5t64:amd64-', 'libpython3-stdlib:amd64-', 'libpython3.12-minimal:amd64-', 'libpython3.12-stdlib:amd64-', 'libquadmath0:amd64-', 'libraqm0:amd64-', 'librav1e0.7:amd64-', 'libreadline8t64:amd64-', 'librtmp1:amd64-', 'libsasl2-2:amd64-', 'libsasl2-modules-db:amd64-', 'libsharpyuv0:amd64-', 'libsm6:amd64-', 'libsqlite3-0:amd64-', 'libssh2-1t64:amd64-', 'libstdc++-14-dev:amd64-', 'libsuitesparseconfig7:amd64-', 'libsvtav1enc2:amd64-', 'libtcl8.6:amd64-', 'libthai-data-', 'libthai0:amd64-', 'libtiff6:amd64-', 'libtirpc-common-', 'libtirpc3t64:amd64-', 'libtk8.6:amd64-', 'libtsan2:amd64-', 'libubsan1:amd64-', 'libuv1t64:amd64-', 'libwebp7:amd64-', 'libx11-6:amd64-', 'libx11-data-', 'libxau6:amd64-', 'libxcb-render0:amd64-', 'libxcb-shm0:amd64-', 'libxcb1:amd64-', 'libxdmcp6:amd64-', 'libxdot4:amd64-', 'libxext6:amd64-', 'libxft2:amd64-', 'libxml2:amd64-', 'libxpm4:amd64-', 'libxrender1:amd64-', 'libxslt1.1:amd64-', 'libxss1:amd64-', 'libxt6t64:amd64-', 'libyaml-0-2:amd64-', 'libyuv0:amd64-', 'linux-libc-dev-', 'littler-', 'media-types-', 'netbase-', 'node-bootstrap-sass-', 'node-html5shiv-', 'node-normalize.css-', 'openssl-', 'pandoc-', 'pandoc-data-', 'perl-', 'perl-modules-5.40-', 'procps-', 'python3-', 'python3-arcp-', 'python3-argcomplete-', 'python3-autocommand-', 'python3-cachecontrol-', 'python3-certifi-', 'python3-chardet-', 'python3-charset-normalizer-', 'python3-coloredlogs-', 'python3-cwl-utils-', 'python3-dateutil-', 'python3-filelock-', 'python3-humanfriendly-', 'python3-idna-', 'python3-inflect-', 'python3-jaraco.context-', 'python3-jaraco.functools-', 'python3-jaraco.text-', 'python3-lxml:amd64-', 'python3-minimal-', 'python3-mistune-', 'python3-more-itertools-', 'python3-msgpack-', 'python3-mypy-extensions-', 'python3-networkx-', 'python3-packaging-', 'python3-pkg-resources-', 'python3-prov-', 'python3-psutil-', 'python3-pydot-', 'python3-pyparsing-', 'python3-rdflib-', 'python3-requests-', 'python3-ruamel.yaml-', 'python3-ruamel.yaml.clib:amd64-', 'python3-schema-salad-', 'python3-setuptools-', 'python3-spython-', 'python3-typeguard-', 'python3-typing-extensions-', 'python3-urllib3-', 'python3-zipp-', 'python3.12-', 'python3.12-minimal-', 'r-base-core-', 'r-bioc-basilisk-', 'r-bioc-basilisk.utils-', 'r-bioc-biocgenerics-', 'r-bioc-biocparallel-', 'r-bioc-dir.expiry-', 'r-bioc-s4vectors-', 'r-cran-backports-', 'r-cran-base64enc-', 'r-cran-base64url-', 'r-cran-batchtools-', 'r-cran-bh-', 'r-cran-bit-', 'r-cran-bit64-', 'r-cran-brew-', 'r-cran-bslib-', 'r-cran-cachem-', 'r-cran-checkmate-', 'r-cran-cli-', 'r-cran-clipr-', 'r-cran-codetools-', 'r-cran-colorspace-', 'r-cran-commonmark-', 'r-cran-cpp11-', 'r-cran-crayon-', 'r-cran-data.table-', 'r-cran-diagrammer-', 'r-cran-digest-', 'r-cran-dplyr-', 'r-cran-evaluate-', 'r-cran-fansi-', 'r-cran-farver-', 'r-cran-fastmap-', 'r-cran-filelock-', 'r-cran-fontawesome-', 'r-cran-formatr-', 'r-cran-fs-', 'r-cran-futile.logger-', 'r-cran-futile.options-', 'r-cran-generics-', 'r-cran-glue-', 'r-cran-here-', 'r-cran-highr-', 'r-cran-hms-', 'r-cran-htmltools-', 'r-cran-htmlwidgets-', 'r-cran-httpuv-', 'r-cran-igraph-', 'r-cran-jquerylib-', 'r-cran-jsonlite-', 'r-cran-knitr-', 'r-cran-labeling-', 'r-cran-lambda.r-', 'r-cran-later-', 'r-cran-lattice-', 'r-cran-lifecycle-', 'r-cran-littler-', 'r-cran-magrittr-', 'r-cran-matrix-', 'r-cran-memoise-', 'r-cran-mime-', 'r-cran-munsell-', 'r-cran-pillar-', 'r-cran-pkgconfig-', 'r-cran-pkgkitten-', 'r-cran-png-', 'r-cran-prettyunits-', 'r-cran-progress-', 'r-cran-promises-', 'r-cran-purrr-', 'r-cran-r.methodss3-', 'r-cran-r.oo-', 'r-cran-r.utils-', 'r-cran-r6-', 'r-cran-rappdirs-', 'r-cran-rcolorbrewer-', 'r-cran-rcpp-', 'r-cran-rcpptoml-', 'r-cran-readr-', 'r-cran-reticulate-', 'r-cran-rlang-', 'r-cran-rmarkdown-', 'r-cran-rprojroot-', 'r-cran-rstudioapi-', 'r-cran-sass-', 'r-cran-scales-', 'r-cran-shiny-', 'r-cran-snow-', 'r-cran-sourcetools-', 'r-cran-stringi-', 'r-cran-stringr-', 'r-cran-tibble-', 'r-cran-tidyr-', 'r-cran-tidyselect-', 'r-cran-tinytex-', 'r-cran-tzdb-', 'r-cran-utf8-', 'r-cran-vctrs-', 'r-cran-viridislite-', 'r-cran-visnetwork-', 'r-cran-vroom-', 'r-cran-withr-', 'r-cran-xfun-', 'r-cran-xtable-', 'r-cran-yaml-', 'readline-common-', 'rpcsvc-proto-', 'sensible-utils-', 'ucf-', 'unzip-', 'x11-common-', 'xdg-utils-', 'zip-', 'r-bioc-rcwl-'] 2m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', '-y', '--no-install-recommends', '--reinstall', 'install', 'libssl3t64:amd64=3.3.2-2', 'openssl-provider-legacy=3.3.2-2'] 2m17.9s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 2 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/2569 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5206 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.3.2-2_amd64.deb ... Unpacking openssl-provider-legacy (3.3.2-2) over (3.3.2-2) ... Preparing to unpack .../libssl3t64_3.3.2-2_amd64.deb ... Unpacking libssl3t64:amd64 (3.3.2-2) over (3.3.2-2) ... Setting up libssl3t64:amd64 (3.3.2-2) ... Setting up openssl-provider-legacy (3.3.2-2) ... Processing triggers for libc-bin (2.40-4) ... 2m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', '-y', '--no-install-recommends', '--reinstall', 'install', 'libssl3t64:amd64=3.3.2-2', 'openssl-provider-legacy=3.3.2-2'] 2m17.9s INFO: Running scripts post_remove 2m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_remove_exceptions'] 2m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_remove_exceptions'] 2m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg', '--purge', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'graphviz', 'javascript-common', 'libabsl20230802:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc6:amd64', 'libgvplugin-gd:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-schema-salad', 'python3-setuptools', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3-zipp', 'python3.12', 'python3.12-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 2m18.6s DUMP: (Reading database ... 5206 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cwl-upgrader which isn't installed dpkg: warning: ignoring request to remove cwltool which isn't installed Purging configuration files for fontconfig (2.15.0-1.1+b1) ... Purging configuration files for fontconfig-config (2.15.0-1.1+b1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... 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Purging configuration files for r-base-core (4.4.2-1) ... dpkg: warning: ignoring request to remove r-bioc-basilisk which isn't installed dpkg: warning: ignoring request to remove r-bioc-basilisk.utils which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-dir.expiry which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-base64url which isn't installed dpkg: warning: ignoring request to remove r-cran-batchtools which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-brew which isn't installed dpkg: warning: ignoring request to remove r-cran-bslib which isn't installed dpkg: warning: ignoring request to remove r-cran-cachem which isn't installed dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-clipr which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-commonmark which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring 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installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-here which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-igraph which isn't installed dpkg: warning: ignoring request to remove r-cran-jquerylib which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-progress which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which isn't installed dpkg: warning: ignoring request to remove r-cran-r.oo which isn't installed dpkg: warning: ignoring request to remove r-cran-r.utils which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rappdirs which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpptoml which isn't installed dpkg: warning: ignoring request to remove r-cran-readr which isn't installed dpkg: warning: ignoring request to remove r-cran-reticulate which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rmarkdown which isn't installed dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-sass which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed dpkg: warning: ignoring request to remove r-cran-tzdb which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-visnetwork which isn't installed dpkg: warning: ignoring request to remove r-cran-vroom which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed Purging configuration files for readline-common (8.3~alpha1-2) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0045) ... Purging configuration files for unzip (6.0-28) ... Purging configuration files for x11-common (1:7.7+23.1) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 2m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg', '--purge', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'graphviz', 'javascript-common', 'libabsl20230802:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc6:amd64', 'libgvplugin-gd:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-schema-salad', 'python3-setuptools', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3-zipp', 'python3.12', 'python3.12-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 2m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg', '--purge', 'r-bioc-rcwl'] 2m18.7s DUMP: dpkg: warning: ignoring request to remove r-bioc-rcwl which isn't installed 2m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg', '--purge', 'r-bioc-rcwl'] 2m18.7s INFO: Running scripts post_purge 2m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_purge_exceptions'] 2m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_purge_exceptions'] 2m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg', '--purge', '--pending'] 2m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg', '--purge', '--pending'] 2m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg', '--remove', '--pending'] 2m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg', '--remove', '--pending'] 2m18.7s INFO: Running scripts post_test 2m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_test_exceptions'] 2m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'tmp/scripts/post_test_exceptions'] 2m18.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 2m19.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 2m20.0s ERROR: WARN: Broken symlinks: /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf 2m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg-divert', '--list'] 2m20.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 2m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'dpkg-divert', '--list'] 2m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', 'clean'] 2m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk', 'apt-get', 'clean'] 2m20.1s DEBUG: Recording chroot state 2m20.9s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned /usr/lib/x86_64-linux-gnu/graphviz/ owned by: libgvplugin-gd:amd64, libgvc6:amd64 /usr/lib/x86_64-linux-gnu/graphviz/config6 not owned 2m20.9s INFO: PASS: Installation and purging test. 2m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/shm'] 2m21.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/shm'] 2m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/console'] 2m21.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/console'] 2m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/ptmx'] 2m21.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/ptmx'] 2m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/pts'] 2m21.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/dev/pts'] 2m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/proc'] 2m21.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk/proc'] 2m21.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 2m21.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvhez_vbk'] 2m21.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpvhez_vbk 2m21.6s INFO: PASS: All tests. 2m21.6s INFO: piuparts run ends. ret=0 End: 2024-12-18 17:54:12 GMT