Start: 2025-08-18 11:07:58 GMT Package: augur Version: 24.4.0-1 Installed-Size: 1056 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-importlib-resources | python3-supported-min (>= 3.11), python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any, python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description: pipeline components for real-time virus analysis Homepage: https://github.com/nextstrain/augur Description-md5: e2aaa44840d7b632d0e95700bc100196 Section: science Priority: optional Filename: pool/main/a/augur/augur_24.4.0-1_all.deb Size: 261232 MD5sum: b572f222840d0090638ca16dde37b5e6 SHA256: 54cf77ceaea54e677ac39643f62ead613bbd628037ce9c203f3d64cfe727f5f0 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt augur=24.4.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508101417~1.6.0-7-g17c4ea32 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt augur=24.4.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-38-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.147-1 (2025-08-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpgjo56s99 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpgjo56s99 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpgjo56s99/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', 'update'] 0m1.6s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [146 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9797 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6537 kB] Fetched 16.5 MB in 1s (17.9 MB/s) Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bsdutils libapt-pkg7.0 libaudit-common libaudit1 libblkid1 libgcc-s1 liblastlog2-2 libmount1 libsmartcols1 libstdc++6 libuuid1 login mount tzdata util-linux 17 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 6138 kB of archives. After this operation, 444 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.1-1 [110 kB] Get:3 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.1-1 [28.6 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.1-1 [37.7 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.1-1 [171 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.1-1 [209 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.1-1 [143 kB] Get:8 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.1-1 [1236 kB] Get:9 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.1-1 [162 kB] Get:10 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-1 [52.0 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-1 [71.7 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-1 [736 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.4 [1182 kB] Get:14 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.4 [1478 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.0.5-1 [13.5 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.0.5-1 [59.4 kB] Get:17 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.1-1 [115 kB] Get:18 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Preconfiguring packages ... Fetched 6138 kB in 0s (36.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.1-1_amd64.deb ... Unpacking bsdutils (1:2.41.1-1) over (1:2.41-5) ... Setting up bsdutils (1:2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41.1-1_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.1-1) over (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.1-1_amd64.deb ... Unpacking libuuid1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libuuid1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.1-1_amd64.deb ... Unpacking libblkid1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libblkid1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.1-1_amd64.deb ... Unpacking libmount1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libmount1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.1-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libsmartcols1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.1-1_amd64.deb ... Unpacking util-linux (2.41.1-1) over (2.41-5) ... Setting up util-linux (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../mount_2.41.1-1_amd64.deb ... Unpacking mount (2.41.1-1) over (2.41-5) ... Selecting previously unselected package gcc-15-base:amd64. Preparing to unpack .../gcc-15-base_15.2.0-1_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-1) ... Setting up gcc-15-base:amd64 (15.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-1_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-1) over (14.2.0-19) ... Setting up libgcc-s1:amd64 (15.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-1_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-1) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.4_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.4) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.4_amd64.deb ... Unpacking apt (3.1.4) over (3.0.3) ... Setting up apt (3.1.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.5-1_all.deb ... Unpacking libaudit-common (1:4.0.5-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.5-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.5-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.1-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.1-1) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Aug 18 11:08:01 UTC 2025. Universal Time is now: Mon Aug 18 11:08:01 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up mount (2.41.1-1) ... Setting up login (1:4.16.0-2+really2.41.1-1) ... Processing triggers for libc-bin (2.41-12) ... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.8s DUMP: ee8f13412c6a9c0123e14458d209c0ee - 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.8s INFO: Running scripts post_setup 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_minimize'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_minimize'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_zz_backports'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_setup_zz_backports'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', 'clean'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', 'clean'] 0m4.3s DEBUG: Recording chroot state 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.6s DUMP: install ok installed apt apt 3.1.4 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41.1-1 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.4 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.5-1 install ok installed libblkid1:amd64 libblkid1 2.41.1-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41.1-1 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg-divert', '--list'] 0m4.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg-divert', '--list'] 0m4.6s INFO: Running scripts is_testable 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s INFO: apt-cache does not know about any of the requested packages 0m4.6s INFO: Running scripts pre_test 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 0m5.0s DEBUG: No broken symlinks as far as we can find. 0m5.0s INFO: Running scripts pre_install 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 0m5.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 0m5.3s DEBUG: No broken symlinks as far as we can find. 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-cache', 'policy'] 0m5.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-cache', 'policy'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-cache', 'policy', 'augur'] 0m5.8s DUMP: augur: Installed: (none) Candidate: 24.4.0-1 Version table: 24.4.0-1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-cache', 'policy', 'augur'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', '-y', 'install', 'augur=24.4.0-1'] 1m25.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser binfmt-support binutils binutils-common binutils-gold binutils-gold-x86-64-linux-gnu binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dirmngr dpkg-dev fakeroot fasttree file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-liberation fonts-liberation-sans-narrow fonts-lyx fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv graphviz ibverbs-providers iqtree isympy-common isympy3 javascript-common krb5-locales libabsl20240722 libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 libarmadillo14 libarpack2t64 libasan8 libassuan9 libatomic1 libauthen-sasl-perl libavif16 libbinutils libblas3 libblosc1 libblosc2-4 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcamd3 libcc1-0 libccolamd3 libcdt5 libcfitsio10t64 libcgraph6 libcholmod5 libclang-cpp19 libclone-perl libcolamd3 libcom-err2 libcrypt-dev libcrypt-urandom-perl libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm2 libdsdp-5.8t64 libedit2 libelf1t64 libencode-locale-perl libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libfakeroot libffi-dev libffi8 libfftw3-double3 libfile-fcntllock-perl libfile-listing-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfuse3-4 libfyba0t64 libgav1-1 libgcc-14-dev libgcrypt20 libgd3 libgdal36 libgdbm-compat4t64 libgdbm6t64 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran5 libgif7 libglib2.0-0t64 libglib2.0-data libglpk40 libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpgme11t64 libgpgmepp6t64 libgpm2 libgprofng0 libgraphite2-3 libgsl28 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5t64 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomenc libheif-plugin-dav1d libheif-plugin-libde265 libheif-plugin-x265 libheif1 libhsa-runtime64-1 libhsakmt1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libice6 libicu76 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libisal2 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libk5crypto3 libkeyutils1 libkmlbase1t64 libkmldom1t64 libkmlengine1t64 libkrb5-3 libkrb5support0 libksba8 liblab-gamut1 liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm17t64 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzo2-2 libmagic-mgc libmagic1t64 libmailtools-perl libmariadb3 libmbedcrypto16 libmbedtls21 libmbedx509-7 libminizip1t64 libmpc3 libmpfr6 libmunge2 libncbi-vdb3 libncurses-dev libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf22 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnl-3-200 libnl-route-3-200 libnpth0t64 libnspr4 libnss3 libnuma1 libodbc2 libodbccr2 libodbcinst2 libogdi4.1 libopenjp2-7 libopenmpi40 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpciaccess0 libperl5.40 libpfm4 libpipeline1 libpixman-1-0 libpmix2t64 libpng16-16t64 libpoppler147 libpq5 libproj25 libpsl5t64 libpsm2-2 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.7 librdmacm1t64 libreadline8t64 librtmp1 librttopo1 libruby libruby3.3 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe2 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libssh2-1t64 libstdc++-14-dev libsuitesparseconfig7 libsvtav1enc2 libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtirpc-common libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libucx0 libumfpack6 libunistring5 liburi-perl liburiparser1 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-215 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxerces-c3.2t64 libxext6 libxft2 libxml2 libxml2-dev libxmu6 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 libz3-4 libz3-dev libze1 libzopfli1 linux-libc-dev llvm-19 llvm-19-dev llvm-19-linker-tools llvm-19-runtime llvm-19-tools lynx lynx-common mafft mailcap make manpages manpages-dev mariadb-common media-types mysql-common ncbi-blast+ ncbi-data ncbi-vdb-data netbase numba-doc ocl-icd-libopencl1 openssl patch perl perl-modules-5.40 perl-openssl-defaults pigz pinentry-curses poppler-data proj-bin proj-data publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-arrow python3-asttokens python3-attr python3-autocommand python3-babel python3-bcbio-gff python3-biopython python3-boto3 python3-botocore python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cpuinfo python3-cssselect python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dendropy python3-dev python3-et-xmlfile python3-executing python3-fonttools python3-fqdn python3-freetype python3-fs python3-gdal python3-html5lib python3-idna python3-inflect python3-ipdb python3-ipython python3-isal python3-isodate python3-isoduration python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jedi python3-jinja2 python3-jmespath python3-json-pointer python3-jsonschema python3-jsonschema-specifications python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-matplotlib-inline python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-platformdirs python3-pooch python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pydot python3-pyfaidx python3-pyfastx python3-pygments python3-pygraphviz python3-pygtrie python3-pyparsing python3-pytz python3-referencing python3-reportlab python3-requests python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-rlpycairo python3-rpds-py python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-soupsieve python3-stack-data python3-sympy python3-tables python3-tables-lib python3-tk python3-tqdm python3-traitlets python3-treetime python3-typeguard python3-typeshed python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-uritemplate python3-urllib3 python3-wcwidth python3-webcolors python3-webencodings python3-wheel python3-xopen python3-yaml python3-zipp python3-zopfli python3-zstandard python3.13 python3.13-dev python3.13-minimal python3.13-tk rake raxml readline-common rpcsvc-proto ruby ruby-csv ruby-did-you-mean ruby-net-telnet ruby-ruby2-keywords ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration seqmagick sgml-base shared-mime-info sphinx-rtd-theme-common tabix tk8.6-blt2.5 unicode-data unixodbc-common unzip vcftools w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev Suggested packages: cron quota binutils-doc gprofng-gui blt-demo bzip2-doc cpp-doc gcc-14-locales cpp-14-doc dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring debian-tag2upload-keyring fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-14-multilib gcc-14-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu gpg-wks-server parcimonie xloadimage scdaemon tpm2daemon gsfonts graphviz-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl libc-devtools glibc-doc sensible-utils git bzr libfftw3-bin libfftw3-dev fuse3 rng-tools libgd-tools gdbm-l10n geotiff-bin gdal-bin libgeotiff-epsg low-memory-monitor libiodbc2-dev default-libmysqlclient-dev gnutls-bin gpm gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libhdf4-alt-dev hdf4-tools libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libhwloc-contrib-plugins libjs-jquery-ui-docs liblcms2-utils libcrypt-ssleay-perl ncurses-doc odbc-postgresql tdsodbc ogdi-bin pciutils libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libstdc++-14-doc tcl8.6 tk8.6 libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl pkg-config llvm-19-doc make-doc man-browser opencl-icd ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl debhelper pinentry-doc poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-venv python-arrow-doc python-attr-doc bwa clustalo clustalw dialign dssp emboss muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 python3-igraph samtools t-coffee wise python-bottleneck-doc python-charset-normalizer-doc python-cvxopt-doc python-cycler-doc python3-genshi python-ipython-doc python-jinja2-doc python-jsonschema-doc llvmlite-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft gir1.2-gtk-3.0 gir1.2-gtk-4.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 nvidia-cuda-toolkit gfortran python-numpy-doc python3-pytest python-openpyxl-doc python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc python3-paramiko python-pygments-doc ttf-bitstream-vera python-pygraphviz-doc python-pygtrie-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc python3-netcdf4 python-tables-doc vitables tix python3-tk-dbg python-traitlets-doc python-zstandard-doc python3.13-venv python3.13-doc readline-doc ri ruby-dev bundler sgml-base-doc Recommended packages: blast2 The following NEW packages will be installed: adduser augur binfmt-support binutils binutils-common binutils-gold binutils-gold-x86-64-linux-gnu binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dirmngr dpkg-dev fakeroot fasttree file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-liberation fonts-liberation-sans-narrow fonts-lyx fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv graphviz ibverbs-providers iqtree isympy-common isympy3 javascript-common krb5-locales libabsl20240722 libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 libarmadillo14 libarpack2t64 libasan8 libassuan9 libatomic1 libauthen-sasl-perl libavif16 libbinutils libblas3 libblosc1 libblosc2-4 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcamd3 libcc1-0 libccolamd3 libcdt5 libcfitsio10t64 libcgraph6 libcholmod5 libclang-cpp19 libclone-perl libcolamd3 libcom-err2 libcrypt-dev libcrypt-urandom-perl libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm2 libdsdp-5.8t64 libedit2 libelf1t64 libencode-locale-perl libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libfakeroot libffi-dev libffi8 libfftw3-double3 libfile-fcntllock-perl libfile-listing-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfuse3-4 libfyba0t64 libgav1-1 libgcc-14-dev libgcrypt20 libgd3 libgdal36 libgdbm-compat4t64 libgdbm6t64 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran5 libgif7 libglib2.0-0t64 libglib2.0-data libglpk40 libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpgme11t64 libgpgmepp6t64 libgpm2 libgprofng0 libgraphite2-3 libgsl28 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5t64 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomenc libheif-plugin-dav1d libheif-plugin-libde265 libheif-plugin-x265 libheif1 libhsa-runtime64-1 libhsakmt1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libice6 libicu76 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libisal2 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libk5crypto3 libkeyutils1 libkmlbase1t64 libkmldom1t64 libkmlengine1t64 libkrb5-3 libkrb5support0 libksba8 liblab-gamut1 liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm17t64 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzo2-2 libmagic-mgc libmagic1t64 libmailtools-perl libmariadb3 libmbedcrypto16 libmbedtls21 libmbedx509-7 libminizip1t64 libmpc3 libmpfr6 libmunge2 libncbi-vdb3 libncurses-dev libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf22 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnl-3-200 libnl-route-3-200 libnpth0t64 libnspr4 libnss3 libnuma1 libodbc2 libodbccr2 libodbcinst2 libogdi4.1 libopenjp2-7 libopenmpi40 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpciaccess0 libperl5.40 libpfm4 libpipeline1 libpixman-1-0 libpmix2t64 libpng16-16t64 libpoppler147 libpq5 libproj25 libpsl5t64 libpsm2-2 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.7 librdmacm1t64 libreadline8t64 librtmp1 librttopo1 libruby libruby3.3 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe2 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libssh2-1t64 libstdc++-14-dev libsuitesparseconfig7 libsvtav1enc2 libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtirpc-common libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libucx0 libumfpack6 libunistring5 liburi-perl liburiparser1 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-215 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxerces-c3.2t64 libxext6 libxft2 libxml2 libxml2-dev libxmu6 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 libz3-4 libz3-dev libze1 libzopfli1 linux-libc-dev llvm-19 llvm-19-dev llvm-19-linker-tools llvm-19-runtime llvm-19-tools lynx lynx-common mafft mailcap make manpages manpages-dev mariadb-common media-types mysql-common ncbi-blast+ ncbi-data ncbi-vdb-data netbase numba-doc ocl-icd-libopencl1 openssl patch perl perl-modules-5.40 perl-openssl-defaults pigz pinentry-curses poppler-data proj-bin proj-data publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-arrow python3-asttokens python3-attr python3-autocommand python3-babel python3-bcbio-gff python3-biopython python3-boto3 python3-botocore python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cpuinfo python3-cssselect python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dendropy python3-dev python3-et-xmlfile python3-executing python3-fonttools python3-fqdn python3-freetype python3-fs python3-gdal python3-html5lib python3-idna python3-inflect python3-ipdb python3-ipython python3-isal python3-isodate python3-isoduration python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jedi python3-jinja2 python3-jmespath python3-json-pointer python3-jsonschema python3-jsonschema-specifications python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-matplotlib-inline python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-platformdirs python3-pooch python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pydot python3-pyfaidx python3-pyfastx python3-pygments python3-pygraphviz python3-pygtrie python3-pyparsing python3-pytz python3-referencing python3-reportlab python3-requests python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-rlpycairo python3-rpds-py python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-soupsieve python3-stack-data python3-sympy python3-tables python3-tables-lib python3-tk python3-tqdm python3-traitlets python3-treetime python3-typeguard python3-typeshed python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-uritemplate python3-urllib3 python3-wcwidth python3-webcolors python3-webencodings python3-wheel python3-xopen python3-yaml python3-zipp python3-zopfli python3-zstandard python3.13 python3.13-dev python3.13-minimal python3.13-tk rake raxml readline-common rpcsvc-proto ruby ruby-csv ruby-did-you-mean ruby-net-telnet ruby-ruby2-keywords ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration seqmagick sgml-base shared-mime-info sphinx-rtd-theme-common tabix tk8.6-blt2.5 unicode-data unixodbc-common unzip vcftools w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 576 newly installed, 0 to remove and 0 not upgraded. Need to get 566 MB of archives. After this operation, 2659 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:2 http://deb.debian.org/debian forky/main amd64 binfmt-support amd64 2.2.2-7 [64.3 kB] Get:3 http://deb.debian.org/debian forky/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:5 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:6 http://deb.debian.org/debian forky/main amd64 pigz amd64 2.8-1 [62.7 kB] Get:7 http://deb.debian.org/debian forky/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.6-1 [864 kB] Get:9 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.6-1 [2218 kB] Get:10 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:11 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get:12 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:15 http://deb.debian.org/debian forky/main amd64 readline-common all 8.2-6 [69.4 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.6-1 [1959 kB] Get:18 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.6-1 [761 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:20 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:21 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-1 [862 kB] Get:24 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:25 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:26 http://deb.debian.org/debian forky/main amd64 adduser all 3.152 [191 kB] Get:27 http://deb.debian.org/debian forky/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Get:28 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get:29 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:32 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:33 http://deb.debian.org/debian forky/main amd64 krb5-locales all 1.21.3-5 [101 kB] Get:34 http://deb.debian.org/debian 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forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:46 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:47 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:48 http://deb.debian.org/debian forky/main amd64 fonts-liberation all 1:2.1.5-3 [1475 kB] Get:49 http://deb.debian.org/debian forky/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:50 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+24 [217 kB] Get:51 http://deb.debian.org/debian forky/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:52 http://deb.debian.org/debian forky/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:53 http://deb.debian.org/debian forky/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:54 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:55 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:58 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:59 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:60 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:62 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:63 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:64 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:65 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:66 http://deb.debian.org/debian forky/main amd64 python3.13-tk amd64 3.13.6-1 [108 kB] Get:67 http://deb.debian.org/debian forky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get:68 http://deb.debian.org/debian forky/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get:69 http://deb.debian.org/debian forky/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get:70 http://deb.debian.org/debian forky/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Get:71 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 15.2.0-1 [140 kB] Get:72 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:73 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:74 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:75 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get:76 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:77 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 15.2.0-1 [9492 B] Get:78 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.84.3-1 [1515 kB] Get:79 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:80 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:81 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get:82 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:83 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:84 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:85 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:86 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:87 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:88 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:89 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:90 http://deb.debian.org/debian forky/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get:91 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:92 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:93 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:94 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:95 http://deb.debian.org/debian forky/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:96 http://deb.debian.org/debian forky/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get:97 http://deb.debian.org/debian forky/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:98 http://deb.debian.org/debian forky/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get:99 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:100 http://deb.debian.org/debian forky/main amd64 xml-core all 0.19 [20.1 kB] Get:101 http://deb.debian.org/debian forky/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:102 http://deb.debian.org/debian forky/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get:103 http://deb.debian.org/debian forky/main amd64 python3-six all 1.17.0-1 [16.5 kB] Get:104 http://deb.debian.org/debian forky/main amd64 python3-bcbio-gff all 0.7.1-2 [33.7 kB] Get:105 http://deb.debian.org/debian forky/main amd64 libsuitesparseconfig7 amd64 1:7.10.1+dfsg-1 [32.3 kB] Get:106 http://deb.debian.org/debian forky/main amd64 libamd3 amd64 1:7.10.1+dfsg-1 [49.2 kB] Get:107 http://deb.debian.org/debian forky/main amd64 libcamd3 amd64 1:7.10.1+dfsg-1 [45.9 kB] Get:108 http://deb.debian.org/debian forky/main amd64 libccolamd3 amd64 1:7.10.1+dfsg-1 [47.7 kB] Get:109 http://deb.debian.org/debian forky/main amd64 libcolamd3 amd64 1:7.10.1+dfsg-1 [41.0 kB] Get:110 http://deb.debian.org/debian forky/main amd64 libcholmod5 amd64 1:7.10.1+dfsg-1 [648 kB] Get:111 http://deb.debian.org/debian forky/main amd64 libdsdp-5.8t64 amd64 5.8-10.1 [181 kB] Get:112 http://deb.debian.org/debian forky/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get:113 http://deb.debian.org/debian forky/main amd64 libltdl7 amd64 2.5.4-4 [416 kB] Get:114 http://deb.debian.org/debian forky/main amd64 libglpk40 amd64 5.0-2 [398 kB] Get:115 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB] Get:116 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB] Get:117 http://deb.debian.org/debian forky/main amd64 libumfpack6 amd64 1:7.10.1+dfsg-1 [288 kB] Get:118 http://deb.debian.org/debian forky/main amd64 python3-cvxopt amd64 1.3.0+dfsg-1+b9 [265 kB] Get:119 http://deb.debian.org/debian forky/main amd64 python3-isodate all 0.7.0-1 [19.4 kB] Get:120 http://deb.debian.org/debian forky/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get:121 http://deb.debian.org/debian forky/main amd64 python3-rpds-py amd64 0.21.0-2+b1 [257 kB] Get:122 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.14.1-1 [91.3 kB] Get:123 http://deb.debian.org/debian forky/main amd64 python3-referencing all 0.36.2-1 [23.7 kB] Get:124 http://deb.debian.org/debian forky/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get:125 http://deb.debian.org/debian forky/main amd64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get:126 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:127 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get:128 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get:129 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:130 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:131 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:132 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:133 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get:134 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:135 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get:136 http://deb.debian.org/debian forky/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:137 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get:138 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:139 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-3 [152 kB] Get:140 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get:141 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get:142 http://deb.debian.org/debian forky/main amd64 python3-pyfaidx all 0.8.1.3-2 [29.1 kB] Get:143 http://deb.debian.org/debian forky/main amd64 python3-pyfastx amd64 2.2.0-1+b1 [58.1 kB] Get:144 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:145 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1 [16.3 MB] Get:146 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:147 http://deb.debian.org/debian forky/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:148 http://deb.debian.org/debian forky/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get:149 http://deb.debian.org/debian forky/main amd64 python-matplotlib-data all 3.10.1+dfsg1-4 [2737 kB] Get:150 http://deb.debian.org/debian forky/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:151 http://deb.debian.org/debian forky/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get:152 http://deb.debian.org/debian forky/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get:153 http://deb.debian.org/debian forky/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get:154 http://deb.debian.org/debian forky/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get:155 http://deb.debian.org/debian forky/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Get:156 http://deb.debian.org/debian forky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get:157 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get:158 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get:159 http://deb.debian.org/debian forky/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB] Get:160 http://deb.debian.org/debian forky/main amd64 python3-lxml amd64 5.4.0-1 [1297 kB] Get:161 http://deb.debian.org/debian forky/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB] Get:162 http://deb.debian.org/debian forky/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:163 http://deb.debian.org/debian forky/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get:164 http://deb.debian.org/debian forky/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get:165 http://deb.debian.org/debian forky/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b4 [299 kB] Get:166 http://deb.debian.org/debian forky/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get:167 http://deb.debian.org/debian forky/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get:168 http://deb.debian.org/debian forky/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:169 http://deb.debian.org/debian forky/main amd64 python3-fonttools amd64 4.57.0-1 [1438 kB] Get:170 http://deb.debian.org/debian forky/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get:171 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get:172 http://deb.debian.org/debian forky/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-4 [23.8 MB] Get:173 http://deb.debian.org/debian forky/main amd64 python3-treetime all 0.11.4-1 [938 kB] Get:174 http://deb.debian.org/debian forky/main amd64 python3-xopen all 1.7.0-3 [16.8 kB] Get:175 http://deb.debian.org/debian forky/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] Get:176 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.3.0-3 [115 kB] Get:177 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:178 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:179 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:180 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get:181 http://deb.debian.org/debian forky/main amd64 python3-botocore all 1.37.9+repack-1 [7311 kB] Get:182 http://deb.debian.org/debian forky/main amd64 python3-s3transfer all 0.11.4-1 [57.7 kB] Get:183 http://deb.debian.org/debian forky/main amd64 python3-boto3 all 1.37.9-1 [339 kB] Get:184 http://deb.debian.org/debian forky/main amd64 python3-dendropy all 4.6.1-2 [277 kB] Get:185 http://deb.debian.org/debian forky/main amd64 python3-schedule all 1.2.2-1 [14.9 kB] Get:186 http://deb.debian.org/debian forky/main amd64 python3-seaborn all 0.13.2-5 [215 kB] Get:187 http://deb.debian.org/debian forky/main amd64 python3-cffi-backend amd64 1.17.1-3 [93.4 kB] Get:188 http://deb.debian.org/debian forky/main amd64 python3-zstandard amd64 0.23.0-5 [351 kB] Get:189 http://deb.debian.org/debian forky/main amd64 python3-pygtrie all 2.2-3 [17.1 kB] Get:190 http://deb.debian.org/debian forky/main amd64 seqmagick all 0.8.6-3 [40.1 kB] Get:191 http://deb.debian.org/debian forky/main amd64 python3-parso all 0.8.4-1 [67.8 kB] Get:192 http://deb.debian.org/debian forky/main amd64 python3-typeshed all 0.0~git20241223.ea91db2-3 [1531 kB] Get:193 http://deb.debian.org/debian forky/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get:194 http://deb.debian.org/debian forky/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get:195 http://deb.debian.org/debian forky/main amd64 python3-matplotlib-inline all 0.1.7-1 [9032 B] Get:196 http://deb.debian.org/debian forky/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get:197 http://deb.debian.org/debian forky/main amd64 python3-prompt-toolkit all 3.0.51-4 [278 kB] Get:198 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get:199 http://deb.debian.org/debian forky/main amd64 python3-asttokens all 3.0.0-2 [20.2 kB] Get:200 http://deb.debian.org/debian forky/main amd64 python3-executing all 2.2.0-0.1 [24.5 kB] Get:201 http://deb.debian.org/debian forky/main amd64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get:202 http://deb.debian.org/debian forky/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get:203 http://deb.debian.org/debian forky/main amd64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get:204 http://deb.debian.org/debian forky/main amd64 python3-pexpect all 4.9-3 [55.6 kB] Get:205 http://deb.debian.org/debian forky/main amd64 python3-ipython all 8.35.0-1 [576 kB] Get:206 http://deb.debian.org/debian forky/main amd64 python3-ipdb all 0.13.13-3 [17.5 kB] Get:207 http://deb.debian.org/debian forky/main amd64 mafft amd64 7.505-1 [1078 kB] Get:208 http://deb.debian.org/debian forky/main amd64 raxml amd64 8.2.13+dfsg-2+b1 [1514 kB] Get:209 http://deb.debian.org/debian forky/main amd64 fasttree amd64 2.1.11-2 [181 kB] Get:210 http://deb.debian.org/debian forky/main amd64 vcftools amd64 0.1.16-3+b1 [431 kB] Get:211 http://deb.debian.org/debian forky/main amd64 augur all 24.4.0-1 [261 kB] Get:212 http://deb.debian.org/debian forky/main amd64 libsframe2 amd64 2.45-3 [79.3 kB] Get:213 http://deb.debian.org/debian forky/main amd64 binutils-common amd64 2.45-3 [2558 kB] Get:214 http://deb.debian.org/debian forky/main amd64 libbinutils amd64 2.45-3 [539 kB] Get:215 http://deb.debian.org/debian forky/main amd64 libgprofng0 amd64 2.45-3 [809 kB] Get:216 http://deb.debian.org/debian forky/main amd64 libctf-nobfd0 amd64 2.45-3 [157 kB] Get:217 http://deb.debian.org/debian forky/main amd64 libctf0 amd64 2.45-3 [89.7 kB] Get:218 http://deb.debian.org/debian forky/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:219 http://deb.debian.org/debian forky/main amd64 binutils-x86-64-linux-gnu amd64 2.45-3 [1043 kB] Get:220 http://deb.debian.org/debian forky/main amd64 binutils-gold-x86-64-linux-gnu amd64 2.44-2 [1197 kB] Get:221 http://deb.debian.org/debian forky/main amd64 binutils-gold amd64 2.44-2 [202 kB] Get:222 http://deb.debian.org/debian forky/main amd64 binutils amd64 2.45-3 [266 kB] Get:223 http://deb.debian.org/debian forky/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB] Get:224 http://deb.debian.org/debian forky/main amd64 linux-libc-dev all 6.12.38-1 [2627 kB] Get:225 http://deb.debian.org/debian forky/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:226 http://deb.debian.org/debian forky/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:227 http://deb.debian.org/debian forky/main amd64 libc6-dev amd64 2.41-12 [1991 kB] Get:228 http://deb.debian.org/debian forky/main amd64 libisl23 amd64 0.27-1 [659 kB] Get:229 http://deb.debian.org/debian forky/main amd64 libmpfr6 amd64 4.2.2-1 [729 kB] Get:230 http://deb.debian.org/debian forky/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Get:231 http://deb.debian.org/debian forky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19 [11.0 MB] Get:232 http://deb.debian.org/debian forky/main amd64 cpp-14 amd64 14.2.0-19 [1280 B] Get:233 http://deb.debian.org/debian forky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Get:234 http://deb.debian.org/debian forky/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Get:235 http://deb.debian.org/debian forky/main amd64 libcc1-0 amd64 15.2.0-1 [42.7 kB] Get:236 http://deb.debian.org/debian forky/main amd64 libitm1 amd64 15.2.0-1 [26.5 kB] Get:237 http://deb.debian.org/debian forky/main amd64 libasan8 amd64 15.2.0-1 [2780 kB] Get:238 http://deb.debian.org/debian forky/main amd64 liblsan0 amd64 15.2.0-1 [1248 kB] Get:239 http://deb.debian.org/debian forky/main amd64 libtsan2 amd64 15.2.0-1 [2492 kB] Get:240 http://deb.debian.org/debian forky/main amd64 libubsan1 amd64 15.2.0-1 [1108 kB] Get:241 http://deb.debian.org/debian forky/main amd64 libhwasan0 amd64 15.2.0-1 [1538 kB] Get:242 http://deb.debian.org/debian forky/main amd64 libquadmath0 amd64 15.2.0-1 [146 kB] Get:243 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:244 http://deb.debian.org/debian forky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19 [21.4 MB] Get:245 http://deb.debian.org/debian forky/main amd64 gcc-14 amd64 14.2.0-19 [540 kB] Get:246 http://deb.debian.org/debian forky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Get:247 http://deb.debian.org/debian forky/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Get:248 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:249 http://deb.debian.org/debian forky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19 [12.1 MB] Get:250 http://deb.debian.org/debian forky/main amd64 g++-14 amd64 14.2.0-19 [22.5 kB] Get:251 http://deb.debian.org/debian forky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:252 http://deb.debian.org/debian forky/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Get:253 http://deb.debian.org/debian forky/main amd64 make amd64 4.4.1-2 [463 kB] Get:254 http://deb.debian.org/debian forky/main amd64 libdpkg-perl all 1.22.21 [650 kB] Get:255 http://deb.debian.org/debian forky/main amd64 patch amd64 2.8-2 [134 kB] Get:256 http://deb.debian.org/debian forky/main amd64 dpkg-dev all 1.22.21 [1338 kB] Get:257 http://deb.debian.org/debian forky/main amd64 build-essential amd64 12.12 [4624 B] Get:258 http://deb.debian.org/debian forky/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB] Get:259 http://deb.debian.org/debian forky/main amd64 gpgconf amd64 2.4.7-21+b3 [129 kB] Get:260 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:261 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:262 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:263 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:264 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get:265 http://deb.debian.org/debian forky/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get:266 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:267 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:268 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:269 http://deb.debian.org/debian forky/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB] Get:270 http://deb.debian.org/debian forky/main amd64 dirmngr amd64 2.4.7-21+b3 [384 kB] Get:271 http://deb.debian.org/debian forky/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:272 http://deb.debian.org/debian forky/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:273 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB] Get:274 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:275 http://deb.debian.org/debian forky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:276 http://deb.debian.org/debian forky/main amd64 fonts-liberation-sans-narrow all 1:1.07.6-4 [182 kB] Get:277 http://deb.debian.org/debian forky/main amd64 gdal-data all 3.10.3+dfsg-1 [403 kB] Get:278 http://deb.debian.org/debian forky/main amd64 gdal-plugins amd64 3.10.3+dfsg-1 [181 kB] Get:279 http://deb.debian.org/debian forky/main amd64 gnupg-l10n all 2.4.7-21 [747 kB] Get:280 http://deb.debian.org/debian forky/main amd64 gpg amd64 2.4.7-21+b3 [634 kB] Get:281 http://deb.debian.org/debian forky/main amd64 pinentry-curses amd64 1.3.2-3 [87.8 kB] Get:282 http://deb.debian.org/debian forky/main amd64 gpg-agent amd64 2.4.7-21+b3 [271 kB] Get:283 http://deb.debian.org/debian forky/main amd64 gpgsm amd64 2.4.7-21+b3 [275 kB] Get:284 http://deb.debian.org/debian forky/main amd64 gnupg all 2.4.7-21 [417 kB] Get:285 http://deb.debian.org/debian forky/main amd64 gpg-wks-client amd64 2.4.7-21+b3 [108 kB] Get:286 http://deb.debian.org/debian forky/main amd64 gpgv amd64 2.4.7-21+b3 [241 kB] Get:287 http://deb.debian.org/debian forky/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:288 http://deb.debian.org/debian forky/main amd64 libcdt5 amd64 2.42.4-3 [40.3 kB] Get:289 http://deb.debian.org/debian forky/main amd64 libcgraph6 amd64 2.42.4-3 [64.0 kB] Get:290 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get:291 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get:292 http://deb.debian.org/debian forky/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:293 http://deb.debian.org/debian forky/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get:294 http://deb.debian.org/debian forky/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get:295 http://deb.debian.org/debian forky/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:296 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1904.20250204-1 [174 kB] Get:297 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.2.1-1.2 [133 kB] Get:298 http://deb.debian.org/debian forky/main amd64 libheif-plugin-dav1d amd64 1.19.8-1 [11.7 kB] Get:299 http://deb.debian.org/debian forky/main amd64 libde265-0 amd64 1.0.16-1 [189 kB] Get:300 http://deb.debian.org/debian forky/main amd64 libheif-plugin-libde265 amd64 1.19.8-1 [15.3 kB] Get:301 http://deb.debian.org/debian forky/main amd64 libheif1 amd64 1.19.8-1 [520 kB] Get:302 http://deb.debian.org/debian forky/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get:303 http://deb.debian.org/debian forky/main amd64 libgd3 amd64 2.3.3-13 [126 kB] Get:304 http://deb.debian.org/debian forky/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get:305 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:306 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get:307 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:308 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB] Get:309 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB] Get:310 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB] Get:311 http://deb.debian.org/debian forky/main amd64 libpathplan4 amd64 2.42.4-3 [42.6 kB] Get:312 http://deb.debian.org/debian forky/main amd64 libgvc6 amd64 2.42.4-3 [686 kB] Get:313 http://deb.debian.org/debian forky/main amd64 libgvpr2 amd64 2.42.4-3 [192 kB] Get:314 http://deb.debian.org/debian forky/main amd64 liblab-gamut1 amd64 2.42.4-3 [198 kB] Get:315 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:316 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:317 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:318 http://deb.debian.org/debian forky/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get:319 http://deb.debian.org/debian forky/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get:320 http://deb.debian.org/debian forky/main amd64 graphviz amd64 2.42.4-3 [621 kB] Get:321 http://deb.debian.org/debian forky/main amd64 libnl-3-200 amd64 3.7.0-2 [59.4 kB] Get:322 http://deb.debian.org/debian forky/main amd64 libnl-route-3-200 amd64 3.7.0-2 [182 kB] Get:323 http://deb.debian.org/debian forky/main amd64 libibverbs1 amd64 56.1-1 [62.4 kB] Get:324 http://deb.debian.org/debian forky/main amd64 ibverbs-providers amd64 56.1-1 [357 kB] Get:325 http://deb.debian.org/debian forky/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get:326 http://deb.debian.org/debian forky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get:327 http://deb.debian.org/debian forky/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get:328 http://deb.debian.org/debian forky/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:329 http://deb.debian.org/debian forky/main amd64 librdmacm1t64 amd64 56.1-1 [70.4 kB] Get:330 http://deb.debian.org/debian forky/main amd64 libfabric1 amd64 2.1.0-1.1 [706 kB] Get:331 http://deb.debian.org/debian forky/main amd64 libhwloc15 amd64 2.12.0-4 [164 kB] Get:332 http://deb.debian.org/debian forky/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get:333 http://deb.debian.org/debian forky/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:334 http://deb.debian.org/debian forky/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get:335 http://deb.debian.org/debian forky/main amd64 libze1 amd64 1.24.1-2 [514 kB] Get:336 http://deb.debian.org/debian forky/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get:337 http://deb.debian.org/debian forky/main amd64 libhwloc-plugins amd64 2.12.0-4 [23.5 kB] Get:338 http://deb.debian.org/debian forky/main amd64 libpmix2t64 amd64 5.0.7-1 [660 kB] Get:339 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:340 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:341 http://deb.debian.org/debian forky/main amd64 libllvm17t64 amd64 1:17.0.6-22+b2 [23.6 MB] Get:342 http://deb.debian.org/debian forky/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get:343 http://deb.debian.org/debian forky/main amd64 libdrm-common all 2.4.124-2 [8288 B] Get:344 http://deb.debian.org/debian forky/main amd64 libdrm2 amd64 2.4.124-2 [39.0 kB] Get:345 http://deb.debian.org/debian forky/main amd64 libdrm-amdgpu1 amd64 2.4.124-2 [22.6 kB] Get:346 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:347 http://deb.debian.org/debian forky/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get:348 http://deb.debian.org/debian forky/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get:349 http://deb.debian.org/debian forky/main amd64 libamdhip64-5 amd64 5.7.1-6 [8924 kB] Get:350 http://deb.debian.org/debian forky/main amd64 libfuse3-4 amd64 3.17.2-3 [98.7 kB] Get:351 http://deb.debian.org/debian forky/main amd64 libibumad3 amd64 56.1-1 [30.0 kB] Get:352 http://deb.debian.org/debian forky/main amd64 libibmad5 amd64 56.1-1 [44.5 kB] Get:353 http://deb.debian.org/debian forky/main amd64 libucx0 amd64 1.18.1+ds-2+b1 [1196 kB] Get:354 http://deb.debian.org/debian forky/main amd64 libopenmpi40 amd64 5.0.7-1 [2365 kB] Get:355 http://deb.debian.org/debian forky/main amd64 iqtree amd64 2.0.7+dfsg-1+b2 [3652 kB] Get:356 http://deb.debian.org/debian forky/main amd64 isympy-common all 1.13.3-5 [234 kB] Get:357 http://deb.debian.org/debian forky/main amd64 isympy3 all 1.13.3-5 [6748 B] Get:358 http://deb.debian.org/debian forky/main amd64 javascript-common all 12+nmu1 [4864 B] Get:359 http://deb.debian.org/debian forky/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:360 http://deb.debian.org/debian forky/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:361 http://deb.debian.org/debian forky/main amd64 libalgorithm-diff-xs-perl amd64 0.04-9 [11.1 kB] Get:362 http://deb.debian.org/debian forky/main amd64 libalgorithm-merge-perl all 0.08-5 [11.8 kB] Get:363 http://deb.debian.org/debian forky/main amd64 libarpack2t64 amd64 3.9.1-6 [104 kB] Get:364 http://deb.debian.org/debian forky/main amd64 libarmadillo14 amd64 1:14.2.3+dfsg-1+b1 [102 kB] Get:365 http://deb.debian.org/debian forky/main amd64 libcrypt-urandom-perl amd64 0.54-1 [15.5 kB] Get:366 http://deb.debian.org/debian forky/main amd64 libauthen-sasl-perl all 2.1900-1 [47.9 kB] Get:367 http://deb.debian.org/debian forky/main amd64 libsnappy1v5 amd64 1.2.2-1 [29.3 kB] Get:368 http://deb.debian.org/debian forky/main amd64 libblosc1 amd64 1.21.5+ds-1+b2 [49.5 kB] Get:369 http://deb.debian.org/debian forky/main amd64 libblosc2-4 amd64 2.17.1+ds-1 [193 kB] Get:370 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:371 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:372 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:373 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:374 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:375 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:376 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get:377 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:378 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:379 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:380 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:381 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:382 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:383 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get:384 http://deb.debian.org/debian forky/main amd64 libcfitsio10t64 amd64 4.6.2-2 [577 kB] Get:385 http://deb.debian.org/debian forky/main amd64 libllvm19 amd64 1:19.1.7-3+b1 [26.0 MB] Get:386 http://deb.debian.org/debian forky/main amd64 libclang-cpp19 amd64 1:19.1.7-3+b1 [13.2 MB] Get:387 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:388 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get:389 http://deb.debian.org/debian forky/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:390 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:391 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get:392 http://deb.debian.org/debian forky/main amd64 libffi-dev amd64 3.4.8-2 [61.1 kB] Get:393 http://deb.debian.org/debian forky/main amd64 libfile-fcntllock-perl amd64 0.22-4+b4 [34.6 kB] Get:394 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:395 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:396 http://deb.debian.org/debian forky/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:397 http://deb.debian.org/debian forky/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:398 http://deb.debian.org/debian forky/main amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1+b1 [53.3 kB] Get:399 http://deb.debian.org/debian forky/main amd64 libfreexl1 amd64 2.0.0-1+b3 [40.0 kB] Get:400 http://deb.debian.org/debian forky/main amd64 libfyba0t64 amd64 4.1.1-11+b1 [113 kB] Get:401 http://deb.debian.org/debian forky/main amd64 libgeos3.13.1 amd64 3.13.1-1 [970 kB] Get:402 http://deb.debian.org/debian forky/main amd64 libgeos-c1t64 amd64 3.13.1-1 [102 kB] Get:403 http://deb.debian.org/debian forky/main amd64 proj-data all 9.6.0-1 [6303 kB] Get:404 http://deb.debian.org/debian forky/main amd64 libproj25 amd64 9.6.0-1 [1453 kB] Get:405 http://deb.debian.org/debian forky/main amd64 libgeotiff5 amd64 1.7.4-1 [68.3 kB] Get:406 http://deb.debian.org/debian forky/main amd64 libgif7 amd64 5.2.2-1+b1 [44.2 kB] Get:407 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:408 http://deb.debian.org/debian forky/main amd64 libhdf4-0-alt amd64 4.3.0-1+b1 [269 kB] Get:409 http://deb.debian.org/debian forky/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:410 http://deb.debian.org/debian forky/main amd64 libjson-c5 amd64 0.18+ds-1 [46.0 kB] Get:411 http://deb.debian.org/debian forky/main amd64 liburiparser1 amd64 0.9.8+dfsg-2 [45.5 kB] Get:412 http://deb.debian.org/debian forky/main amd64 libkmlbase1t64 amd64 1.3.0-12+b2 [50.5 kB] Get:413 http://deb.debian.org/debian forky/main amd64 libkmldom1t64 amd64 1.3.0-12+b2 [158 kB] Get:414 http://deb.debian.org/debian forky/main amd64 libkmlengine1t64 amd64 1.3.0-12+b2 [80.1 kB] Get:415 http://deb.debian.org/debian forky/main amd64 mysql-common all 5.8+1.1.1 [6784 B] Get:416 http://deb.debian.org/debian forky/main amd64 mariadb-common all 1:11.8.2-1 [28.4 kB] Get:417 http://deb.debian.org/debian forky/main amd64 libmariadb3 amd64 1:11.8.2-1 [187 kB] Get:418 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get:419 http://deb.debian.org/debian forky/main amd64 libnetcdf22 amd64 1:4.9.3-1 [517 kB] Get:420 http://deb.debian.org/debian forky/main amd64 libodbc2 amd64 2.3.12-2 [151 kB] Get:421 http://deb.debian.org/debian forky/main amd64 unixodbc-common all 2.3.12-2 [8640 B] Get:422 http://deb.debian.org/debian forky/main amd64 libodbcinst2 amd64 2.3.12-2 [35.1 kB] Get:423 http://deb.debian.org/debian forky/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:424 http://deb.debian.org/debian forky/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:425 http://deb.debian.org/debian forky/main amd64 libogdi4.1 amd64 4.1.1+ds-5 [217 kB] Get:426 http://deb.debian.org/debian forky/main amd64 libgpgme11t64 amd64 1.24.2-3 [346 kB] Get:427 http://deb.debian.org/debian forky/main amd64 libgpgmepp6t64 amd64 1.24.2-3 [341 kB] Get:428 http://deb.debian.org/debian forky/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get:429 http://deb.debian.org/debian forky/main amd64 libnss3 amd64 2:3.114-1 [1399 kB] Get:430 http://deb.debian.org/debian forky/main amd64 libpoppler147 amd64 25.03.0-5 [2034 kB] Get:431 http://deb.debian.org/debian forky/main amd64 libpq5 amd64 17.5-1 [226 kB] Get:432 http://deb.debian.org/debian forky/main amd64 librttopo1 amd64 1.1.0-4 [179 kB] Get:433 http://deb.debian.org/debian forky/main amd64 libspatialite8t64 amd64 5.1.0-3+b2 [1864 kB] Get:434 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:435 http://deb.debian.org/debian forky/main amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3+b2 [898 kB] Get:436 http://deb.debian.org/debian forky/main amd64 libgdal36 amd64 3.10.3+dfsg-1 [9260 kB] Get:437 http://deb.debian.org/debian forky/main amd64 libglib2.0-data all 2.84.3-1 [1285 kB] Get:438 http://deb.debian.org/debian forky/main amd64 libgpg-error-l10n all 1.55-2 [116 kB] Get:439 http://deb.debian.org/debian forky/main amd64 libgpm2 amd64 1.20.7-11+b2 [14.4 kB] Get:440 http://deb.debian.org/debian forky/main amd64 libgts-bin amd64 0.7.6+darcs121130-5.2+b1 [47.7 kB] Get:441 http://deb.debian.org/debian forky/main amd64 libheif-plugin-aomenc amd64 1.19.8-1 [23.8 kB] Get:442 http://deb.debian.org/debian forky/main amd64 libx265-215 amd64 4.1-2 [1237 kB] Get:443 http://deb.debian.org/debian forky/main amd64 libheif-plugin-x265 amd64 1.19.8-1 [22.0 kB] Get:444 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:445 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get:446 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:447 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:448 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:449 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:450 http://deb.debian.org/debian forky/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:451 http://deb.debian.org/debian forky/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:452 http://deb.debian.org/debian forky/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:453 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get:454 http://deb.debian.org/debian forky/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:455 http://deb.debian.org/debian forky/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:456 http://deb.debian.org/debian forky/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:457 http://deb.debian.org/debian forky/main amd64 libio-compress-brotli-perl amd64 0.004001-2+b3 [16.9 kB] Get:458 http://deb.debian.org/debian forky/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:459 http://deb.debian.org/debian forky/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:460 http://deb.debian.org/debian forky/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:461 http://deb.debian.org/debian forky/main amd64 libisal2 amd64 2.31.1-1.1 [114 kB] Get:462 http://deb.debian.org/debian forky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:463 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get:464 http://deb.debian.org/debian forky/main amd64 libldap-common all 2.6.10+dfsg-1 [35.1 kB] Get:465 http://deb.debian.org/debian forky/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:466 http://deb.debian.org/debian forky/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:467 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:468 http://deb.debian.org/debian forky/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:469 http://deb.debian.org/debian forky/main amd64 libwww-perl all 6.78-1 [183 kB] Get:470 http://deb.debian.org/debian forky/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:471 http://deb.debian.org/debian forky/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:472 http://deb.debian.org/debian forky/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:473 http://deb.debian.org/debian forky/main amd64 libmailtools-perl all 2.22-1 [88.8 kB] Get:474 http://deb.debian.org/debian forky/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB] Get:475 http://deb.debian.org/debian forky/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB] Get:476 http://deb.debian.org/debian forky/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB] Get:477 http://deb.debian.org/debian forky/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:478 http://deb.debian.org/debian forky/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:479 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get:480 http://deb.debian.org/debian forky/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get:481 http://deb.debian.org/debian forky/main amd64 libodbccr2 amd64 2.3.12-2 [18.1 kB] Get:482 http://deb.debian.org/debian forky/main amd64 libpfm4 amd64 4.13.0+git106-g3e4031b-1 [372 kB] Get:483 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.6-1 [2162 kB] Get:484 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:485 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.6-1 [5273 kB] Get:486 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Get:487 http://deb.debian.org/debian forky/main amd64 rubygems-integration all 1.19 [5488 B] Get:488 http://deb.debian.org/debian forky/main amd64 ruby3.3 amd64 3.3.8-2 [834 kB] Get:489 http://deb.debian.org/debian forky/main amd64 ruby-rubygems all 3.6.7-2 [407 kB] Get:490 http://deb.debian.org/debian forky/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get:491 http://deb.debian.org/debian forky/main amd64 rake all 13.2.1-1 [65.2 kB] Get:492 http://deb.debian.org/debian forky/main amd64 ruby-csv all 3.3.4-1 [42.2 kB] Get:493 http://deb.debian.org/debian forky/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get:494 http://deb.debian.org/debian forky/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get:495 http://deb.debian.org/debian forky/main amd64 ruby-ruby2-keywords all 0.0.5-1 [4300 B] Get:496 http://deb.debian.org/debian forky/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get:497 http://deb.debian.org/debian forky/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get:498 http://deb.debian.org/debian forky/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:499 http://deb.debian.org/debian forky/main amd64 libruby3.3 amd64 3.3.8-2 [6301 kB] Get:500 http://deb.debian.org/debian forky/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get:501 http://deb.debian.org/debian forky/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-9 [66.7 kB] Get:502 http://deb.debian.org/debian forky/main amd64 libtbbbind-2-5 amd64 2022.1.0-1 [14.0 kB] Get:503 http://deb.debian.org/debian forky/main amd64 libtbbmalloc2 amd64 2022.1.0-1 [50.2 kB] Get:504 http://deb.debian.org/debian forky/main amd64 libtbb12 amd64 2022.1.0-1 [91.7 kB] Get:505 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get:506 http://deb.debian.org/debian forky/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-2.1 [794 kB] Get:507 http://deb.debian.org/debian forky/main amd64 libz3-dev amd64 4.13.3-1 [107 kB] Get:508 http://deb.debian.org/debian forky/main amd64 llvm-19-runtime amd64 1:19.1.7-3+b1 [551 kB] Get:509 http://deb.debian.org/debian forky/main amd64 llvm-19-linker-tools amd64 1:19.1.7-3+b1 [1263 kB] Get:510 http://deb.debian.org/debian forky/main amd64 llvm-19 amd64 1:19.1.7-3+b1 [16.4 MB] Get:511 http://deb.debian.org/debian forky/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Get:512 http://deb.debian.org/debian forky/main amd64 llvm-19-tools amd64 1:19.1.7-3+b1 [511 kB] Get:513 http://deb.debian.org/debian forky/main amd64 llvm-19-dev amd64 1:19.1.7-3+b1 [43.1 MB] Get:514 http://deb.debian.org/debian forky/main amd64 lynx-common all 2.9.2-1 [1193 kB] Get:515 http://deb.debian.org/debian forky/main amd64 lynx amd64 2.9.2-1 [641 kB] Get:516 http://deb.debian.org/debian forky/main amd64 mailcap all 3.74 [32.8 kB] Get:517 http://deb.debian.org/debian forky/main amd64 manpages-dev all 6.9.1-1 [2122 kB] Get:518 http://deb.debian.org/debian forky/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get:519 http://deb.debian.org/debian forky/main amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] Get:520 http://deb.debian.org/debian forky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get:521 http://deb.debian.org/debian forky/main amd64 numba-doc all 0.61.2+dfsg-1 [1035 kB] Get:522 http://deb.debian.org/debian forky/main amd64 proj-bin amd64 9.6.0-1 [230 kB] Get:523 http://deb.debian.org/debian forky/main amd64 publicsuffix all 20250328.1952-0.1 [296 kB] Get:524 http://deb.debian.org/debian forky/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get:525 http://deb.debian.org/debian forky/main amd64 python-biopython-doc all 1.85+dfsg-4 [18.2 MB] Get:526 http://deb.debian.org/debian forky/main amd64 python-odf-doc all 1.4.2-4 [5344 kB] Get:527 http://deb.debian.org/debian forky/main amd64 python3-legacy-cgi all 2.6.3-1 [16.5 kB] Get:528 http://deb.debian.org/debian forky/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:529 http://deb.debian.org/debian forky/main amd64 python3-odf all 1.4.2-4 [78.4 kB] Get:530 http://deb.debian.org/debian forky/main amd64 python-odf-tools all 1.4.2-4 [28.4 kB] Get:531 http://deb.debian.org/debian forky/main amd64 python-tables-data all 3.10.2-2 [47.3 kB] Get:532 http://deb.debian.org/debian forky/main amd64 python3-arrow all 1.3.0-1.1 [64.7 kB] Get:533 http://deb.debian.org/debian forky/main amd64 python3-babel all 2.17.0-1 [117 kB] Get:534 http://deb.debian.org/debian forky/main amd64 python3-bottleneck amd64 1.4.2+ds1-2+b1 [92.3 kB] Get:535 http://deb.debian.org/debian forky/main amd64 python3-soupsieve all 2.7-1 [39.0 kB] Get:536 http://deb.debian.org/debian forky/main amd64 python3-bs4 all 4.13.4-2 [167 kB] Get:537 http://deb.debian.org/debian forky/main amd64 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Get:538 http://deb.debian.org/debian forky/main amd64 python3-cssselect all 1.3.0-1 [21.9 kB] Get:539 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.6-1 [504 kB] Get:540 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Get:541 http://deb.debian.org/debian forky/main amd64 python3-et-xmlfile all 2.0.0-1 [78.2 kB] Get:542 http://deb.debian.org/debian forky/main amd64 python3-fqdn all 1.5.1-2 [7592 B] Get:543 http://deb.debian.org/debian forky/main amd64 python3-gdal amd64 3.10.3+dfsg-1 [959 kB] Get:544 http://deb.debian.org/debian forky/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB] Get:545 http://deb.debian.org/debian forky/main amd64 python3-html5lib all 1.2-2 [92.1 kB] Get:546 http://deb.debian.org/debian forky/main amd64 python3-isal amd64 1.7.2-1 [43.4 kB] Get:547 http://deb.debian.org/debian forky/main amd64 python3-isoduration all 20.11.0+git20211126.ae0bd61-2 [12.3 kB] Get:548 http://deb.debian.org/debian forky/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get:549 http://deb.debian.org/debian forky/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get:550 http://deb.debian.org/debian forky/main amd64 python3-json-pointer all 2.4-3 [14.6 kB] Get:551 http://deb.debian.org/debian forky/main amd64 python3-llvmlite amd64 0.44.0-1 [231 kB] Get:552 http://deb.debian.org/debian forky/main amd64 python3-numba amd64 0.61.2+dfsg-1 [1773 kB] Get:553 http://deb.debian.org/debian forky/main amd64 python3-numexpr amd64 2.11.0-1 [130 kB] Get:554 http://deb.debian.org/debian forky/main amd64 python3-olefile all 0.47-1 [39.3 kB] Get:555 http://deb.debian.org/debian forky/main amd64 python3-openpyxl all 3.1.5+dfsg-2 [166 kB] Get:556 http://deb.debian.org/debian forky/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get:557 http://deb.debian.org/debian forky/main amd64 python3-pip all 25.2+dfsg-1 [1386 kB] Get:558 http://deb.debian.org/debian forky/main amd64 python3-pooch all 1.8.2-1 [58.4 kB] Get:559 http://deb.debian.org/debian forky/main amd64 python3-pydot all 2.0.0-3 [32.6 kB] Get:560 http://deb.debian.org/debian forky/main amd64 python3-pygraphviz amd64 1.14-2 [77.5 kB] Get:561 http://deb.debian.org/debian forky/main amd64 python3-rfc3339-validator all 0.1.4-2 [4060 B] Get:562 http://deb.debian.org/debian forky/main amd64 python3-rfc3986-validator all 0.1.1-2 [4884 B] Get:563 http://deb.debian.org/debian forky/main amd64 python3-rfc3987 all 1.3.8-3 [8884 B] Get:564 http://deb.debian.org/debian forky/main amd64 python3-tables-lib amd64 3.10.2-2+b1 [503 kB] Get:565 http://deb.debian.org/debian forky/main amd64 python3-tables all 3.10.2-2 [353 kB] Get:566 http://deb.debian.org/debian forky/main amd64 python3-tqdm all 4.67.1-5 [90.8 kB] Get:567 http://deb.debian.org/debian forky/main amd64 python3-tz all 2025.2-3 [4280 B] Get:568 http://deb.debian.org/debian forky/main amd64 python3-uritemplate all 4.1.1-3 [10.6 kB] Get:569 http://deb.debian.org/debian forky/main amd64 python3-webcolors all 1.13-1 [15.3 kB] Get:570 http://deb.debian.org/debian forky/main amd64 ruby-sdbm amd64 1.0.0-5+b7 [15.1 kB] Get:571 http://deb.debian.org/debian forky/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get:572 http://deb.debian.org/debian forky/main amd64 tabix amd64 1.21+ds-1 [496 kB] Get:573 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-29 [173 kB] Get:574 http://deb.debian.org/debian forky/main amd64 xdg-user-dirs amd64 0.18-2 [53.2 kB] Get:575 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-15 [235 kB] Get:576 http://deb.debian.org/debian forky/main amd64 gnupg-utils amd64 2.4.7-21+b3 [194 kB] Preconfiguring packages ... Fetched 566 MB in 6s (94.0 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4942 files and directories currently installed.) Preparing to unpack .../0-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../1-binfmt-support_2.2.2-7_amd64.deb ... Unpacking binfmt-support (2.2.2-7) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) ... Selecting previously unselected package libogdi4.1:amd64. Preparing to unpack .../398-libogdi4.1_4.1.1+ds-5_amd64.deb ... Unpacking libogdi4.1:amd64 (4.1.1+ds-5) ... Selecting previously unselected package libgpgme11t64:amd64. Preparing to unpack .../399-libgpgme11t64_1.24.2-3_amd64.deb ... Unpacking libgpgme11t64:amd64 (1.24.2-3) ... Selecting previously unselected package libgpgmepp6t64:amd64. Preparing to unpack .../400-libgpgmepp6t64_1.24.2-3_amd64.deb ... Unpacking libgpgmepp6t64:amd64 (1.24.2-3) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../401-libnspr4_2%3a4.36-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.36-1) ... 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Setting up libhwloc15:amd64 (2.12.0-4) ... Setting up libmpc3:amd64 (1.3.1-1+b3) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Setting up libatomic1:amd64 (15.2.0-1) ... Setting up patch (2.8-2) ... Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libmariadb3:amd64 (1:11.8.2-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up unixodbc-common (2.3.12-2) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up lynx-common (2.9.2-1) ... Setting up libltdl7:amd64 (2.5.4-4) ... Setting up libfftw3-double3:amd64 (3.3.10-2+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (15.2.0-1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... 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Setting up python-tables-data (3.10.2-2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libcc1-0:amd64 (15.2.0-1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up liblsan0:amd64 (15.2.0-1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libitm1:amd64 (15.2.0-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libodbccr2:amd64 (2.3.12-2) ... Setting up raxml (8.2.13+dfsg-2+b1) ... Setting up gdal-plugins:amd64 (3.10.3+dfsg-1) ... Setting up libctf0:amd64 (2.45-3) ... Setting up libksba8:amd64 (1.6.7-2+b1) ... Setting up pinentry-curses (1.3.2-3) ... Setting up libllvm19:amd64 (1:19.1.7-3+b1) ... Setting up binutils-gold-x86-64-linux-gnu (2.44-2) ... Setting up libz3-dev:amd64 (4.13.3-1) ... Setting up manpages-dev (6.9.1-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libodbcinst2:amd64 (2.3.12-2) ... Setting up libavif16:amd64 (1.2.1-1.2) ... Setting up liblapack3:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libarpack2t64:amd64 (3.9.1-6) ... Setting up libamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libcolamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up binutils-gold (2.44-2) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libnss3:amd64 (2:3.114-1) ... Setting up libffi-dev:amd64 (3.4.8-2) ... Setting up libcamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libtbbbind-2-5:amd64 (2022.1.0-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-2) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up libkmldom1t64:amd64 (1.3.0-12+b2) ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up perl (5.40.1-6) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libglib2.0-0t64:amd64 (2.84.3-1) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.45-3) ... Setting up libmbedx509-7:amd64 (3.6.4-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libllvm17t64:amd64 (1:17.0.6-22+b2) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libglpk40:amd64 (5.0-2) ... Setting up libio-compress-brotli-perl (0.004001-2+b3) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up python-odf-doc (1.4.2-4) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libio-html-perl (1.004-3) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-19) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libdpkg-perl (1.22.21) ... Setting up cpp-14 (14.2.0-19) ... Setting up libhdf4-0-alt:amd64 (4.3.0-1+b1) ... Setting up libccolamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libmbedtls21:amd64 (3.6.4-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libgvpr2:amd64 (2.42.4-3) ... Setting up libdrm2:amd64 (2.4.124-2) ... Setting up libfreexl1:amd64 (2.0.0-1+b3) ... Setting up python-biopython-doc (1.85+dfsg-4) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.2) ... Setting up gpgconf (2.4.7-21+b3) ... Setting up libc6-dev:amd64 (2.41-12) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libdsdp-5.8t64 (5.8-10.1) ... Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ... Setting up libarmadillo14 (1:14.2.3+dfsg-1+b1) ... Setting up llvm-19-linker-tools (1:19.1.7-3+b1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up numba-doc (0.61.2+dfsg-1) ... Setting up libgcc-14-dev:amd64 (14.2.0-19) ... Setting up llvm-19-runtime (1:19.1.7-3+b1) ... Setting up libstdc++-14-dev:amd64 (14.2.0-19) ... Setting up mailcap (3.74) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.6-1) ... Setting up liburi-perl (5.30-1) ... Setting up gpg (2.4.7-21+b3) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libclang-cpp19 (1:19.1.7-3+b1) ... Setting up gnupg-utils (2.4.7-21+b3) ... Setting up binutils-x86-64-linux-gnu (2.45-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.124-2) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libpython3.13:amd64 (3.13.6-1) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up vcftools (0.1.16-3+b1) ... Setting up libgts-bin (0.7.6+darcs121130-5.2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libibverbs1:amd64 (56.1-1) ... Setting up fontconfig (2.15.0-2.3) ... Regenerating fonts cache... done. Setting up libcholmod5:amd64 (1:7.10.1+dfsg-1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libncurses-dev:amd64 (6.5+20250216-2) ... Setting up gpg-agent (2.4.7-21+b3) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libfont-afm-perl (1.20-4) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up ibverbs-providers:amd64 (56.1-1) ... Setting up libogdi4.1:amd64 (4.1.1+ds-5) ... Setting up libfile-fcntllock-perl (0.22-4+b4) ... Setting up python3.13 (3.13.6-1) ... Setting up mafft (7.505-1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up gpgsm (2.4.7-21+b3) ... Setting up libpango-1.0-0:amd64 (1.56.3-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libcrypt-urandom-perl (0.54-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up libpq5:amd64 (17.5-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up python3 (3.13.5-1) ... Setting up libtbb12:amd64 (2022.1.0-1) ... Setting up rubygems-integration (1.19) ... Setting up binutils (2.45-3) ... Setting up libkmlengine1t64:amd64 (1.3.0-12+b2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:amd64 (2.12.0-4) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-webencodings (0.5.1-5) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.6-1) ... Setting up python3-platformdirs (4.3.7-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up dpkg-dev (1.22.21) ... Setting up python3-uritemplate (4.1.1-3) ... Setting up python3-fs (2.4.16-7) ... Setting up ncbi-blast+ (2.16.0+ds-7) ... Setting up python3-six (1.17.0-1) ... Setting up dirmngr (2.4.7-21+b3) ... Setting up python3-isodate (0.7.0-1) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-fqdn (1.5.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygtrie (2.2-3) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-xopen (1.7.0-3) ... Setting up python3-webcolors (1.13-1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-isal (1.7.2-1) ... Setting up python3-typeshed (0.0~git20241223.ea91db2-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-rfc3987 (1.3.8-3) ... Setting up python3-cycler (0.12.1-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Setting up python3-rfc3986-validator (0.1.1-2) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.14.1-1) ... Setting up libpmix2t64:amd64 (5.0.7-1) ... Setting up python3-cpuinfo (9.0.0+git20221119-3) ... Setting up python3-html5lib (1.2-2) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-rpds-py (0.21.0-2+b1) ... Setting up python3-legacy-cgi (2.6.3-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libumfpack6:amd64 (1:7.10.1+dfsg-1) ... Setting up python3-json-pointer (2.4-3) ... Setting up python3-lxml:amd64 (5.4.0-1) ... Setting up cpp (4:14.2.0-1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up python3-et-xmlfile (2.0.0-1) ... Setting up gnupg (2.4.7-21) ... Setting up librdmacm1t64:amd64 (56.1-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-2) ... Setting up libgpgme11t64:amd64 (1.24.2-3) ... Setting up lynx (2.9.2-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up gcc-14-x86-64-linux-gnu (14.2.0-19) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-cssselect (1.3.0-1) ... Setting up python3-dendropy (4.6.1-2) ... Setting up libalgorithm-diff-xs-perl (0.04-9) ... Setting up python3-soupsieve (2.7-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up python3-cffi-backend:amd64 (1.17.1-3) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ... Setting up libalgorithm-merge-perl (0.08-5) ... Setting up libhttp-message-perl (7.00-2) ... Setting up python3-ptyprocess (0.7.0-6) ... Setting up libhtml-form-perl (6.12-1) ... Setting up python3-prompt-toolkit (3.0.51-4) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-schedule (1.2.2-1) ... Setting up python3-pyfaidx (0.8.1.3-2) ... Setting up libfabric1:amd64 (2.1.0-1.1) ... Setting up python3-sympy (1.13.3-5) ... Setting up python3-attr (25.3.0-1) ... Setting up libgpgmepp6t64:amd64 (1.24.2-3) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up python3-pure-eval (0.2.3-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up python3-scipy (1.15.3-1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gpg-wks-client (2.4.7-21+b3) ... Setting up python3-arrow (1.3.0-1.1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.14.1-2) ... Setting up python3-parso (0.8.4-1) ... Setting up python3-cvxopt (1.3.0+dfsg-1+b9) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.4.0+dfsg-2) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-asttokens (3.0.0-2) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b4) ... Setting up python3-olefile (0.47-1) ... Setting up libauthen-sasl-perl (2.1900-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Setting up python3-tqdm (4.67.1-5) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-rfc3339-validator (0.1.4-2) ... Setting up python3-pyfastx (2.2.0-1+b1) ... Setting up isympy-common (1.13.3-5) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-2) ... Setting up python3-isoduration (20.11.0+git20211126.ae0bd61-2) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up python3-pytz (2025.2-3) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libxerces-c3.2t64:amd64 (3.2.4+debian-1.3+b2) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-tz (2025.2-3) ... Setting up python3-bs4 (4.13.4-2) ... Setting up gcc-14 (14.2.0-19) ... Setting up python3-matplotlib-inline (0.1.7-1) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-zstandard (0.23.0-5) ... Setting up libcfitsio10t64:amd64 (4.6.2-2) ... Setting up python3-pandas (2.2.3+dfsg-9) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up python3-pil.imagetk:amd64 (11.1.0-5+b1) ... Setting up libmailtools-perl (2.22-1) ... Setting up python3-executing (2.2.0-0.1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-openpyxl (3.1.5+dfsg-2) ... Setting up python3-pexpect (4.9-3) ... Setting up isympy3 (1.13.3-5) ... Setting up libpython3.13-dev:amd64 (3.13.6-1) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up python3-bottleneck (1.4.2+ds1-2+b1) ... Setting up python3-numexpr (2.11.0-1) ... Setting up python3-pip (25.2+dfsg-1) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-reportlab (4.4.3-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up libhttp-daemon-perl (6.16-1) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up llvm-19 (1:19.1.7-3+b1) ... Setting up g++-14 (14.2.0-19) ... Setting up llvm-19-tools (1:19.1.7-3+b1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-odf (1.4.2-4) ... Setting up python3-referencing (0.36.2-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up libpython3-dev:amd64 (3.13.5-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up libpoppler147:amd64 (25.03.0-5) ... Setting up libproj25:amd64 (9.6.0-1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3.13-dev (3.13.6-1) ... Setting up python3-tables-lib (3.10.2-2+b1) ... Setting up libnetcdf22:amd64 (1:4.9.3-1) ... Setting up python-odf-tools (1.4.2-4) ... Setting up proj-bin (9.6.0-1) ... Setting up python3-tables (3.10.2-2) ... Setting up python3-networkx (3.2.1-5) ... Setting up gcc (4:14.2.0-1) ... Setting up libgeotiff5:amd64 (1.7.4-1) ... Setting up python3-llvmlite (0.44.0-1) ... Setting up libamdhip64-5:amd64 (5.7.1-6) ... Setting up python3-pooch (1.8.2-1) ... Setting up python3-ipython (8.35.0-1) ... Setting up python3-botocore (1.37.9+repack-1) ... Setting up python3-dev (3.13.5-1) ... Setting up llvm-19-dev (1:19.1.7-3+b1) ... Setting up g++ (4:14.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.12) ... Setting up python3-ipdb (0.13.13-3) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up libspatialite8t64:amd64 (5.1.0-3+b2) ... Setting up libucx0:amd64 (1.18.1+ds-2+b1) ... Setting up python3-s3transfer (0.11.4-1) ... Setting up python3-numba (0.61.2+dfsg-1) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up python3-jsonschema (4.19.2-6) ... Setting up python3-boto3 (1.37.9-1) ... Setting up libopenmpi40:amd64 (5.0.7-1) ... Setting up iqtree (2.0.7+dfsg-1+b2) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up libheif-plugin-dav1d:amd64 (1.19.8-1) ... Setting up libheif-plugin-libde265:amd64 (1.19.8-1) ... Setting up libwww-perl (6.78-1) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up libheif1:amd64 (1.19.8-1) ... Setting up python3-fonttools (4.57.0-1) ... Setting up libgd3:amd64 (2.3.3-13) ... Setting up libgvc6 (2.42.4-3) ... Setting up libgdal36:amd64 (3.10.3+dfsg-1) ... Setting up ruby3.3 (3.3.8-2) ... Setting up python3-gdal (3.10.3+dfsg-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up graphviz (2.42.4-3) ... Setting up python3-matplotlib (3.10.1+dfsg1-4) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up libheif-plugin-x265:amd64 (1.19.8-1) ... Setting up libheif-plugin-aomenc:amd64 (1.19.8-1) ... Setting up python3-pydot (2.0.0-3) ... Setting up python3-seaborn (0.13.2-5) ... Setting up ruby (1:3.3+b1) ... Setting up rake (13.2.1-1) ... Setting up python3-pygraphviz (1.14-2) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b7) ... Setting up ruby-rubygems (3.6.7-2) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-4) ... Setting up python3-treetime (0.11.4-1) ... Setting up seqmagick (0.8.6-3) ... Setting up python3-bcbio-gff (0.7.1-2) ... Setting up augur (24.4.0-1) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', '-y', 'install', 'augur=24.4.0-1'] 1m25.8s INFO: Running scripts post_install 1m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_install_exceptions'] 1m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_install_exceptions'] 1m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'systemd-tmpfiles', '--cat-config'] 1m25.8s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 1m25.8s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'systemd-tmpfiles', '--cat-config'] 1m25.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 1m28.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 1m31.4s ERROR: WARN: Broken symlinks: /usr/share/man/man1/rdbg.1.gz -> rdbg3.3.1.gz (ruby) 1m33.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', '-ac', '--ignore-obsolete'] 2m5.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', '-ac', '--ignore-obsolete'] 2m5.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m5.0s DUMP: 0.15.9~deb12u1 2m5.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m5.0s INFO: Running adequate version 0.15.9~deb12u1 now. 2m5.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'augur'] 2m5.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'augur'] 2m5.1s INFO: Running scripts pre_remove 2m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_exceptions'] 2m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/pre_remove_exceptions'] 2m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m18.8s DUMP: install ok installed adduser adduser 3.152 install ok installed apt apt 3.1.4 install ok installed augur augur 24.4.0-1 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed binfmt-support binfmt-support 2.2.2-7 install ok installed binutils binutils 2.45-3 install ok installed binutils-common:amd64 binutils-common 2.45-3 install ok installed binutils-gold binutils-gold 2.44-2 install ok installed binutils-gold-x86-64-linux-gnu binutils-gold-x86-64-linux-gnu 2.44-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.45-3 install ok installed blt blt 2.5.3+dfsg-8 install ok installed bsdutils bsdutils 1:2.41.1-1 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6 install ok installed ca-certificates ca-certificates 20250419 install ok installed coreutils coreutils 9.7-3 install ok installed cpp cpp 4:14.2.0-1 install ok installed cpp-14 cpp-14 14.2.0-19 install ok installed cpp-14-x86-64-linux-gnu cpp-14-x86-64-linux-gnu 14.2.0-19 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:14.2.0-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dirmngr dirmngr 2.4.7-21+b3 install ok installed dpkg dpkg 1.22.21 install ok installed dpkg-dev dpkg-dev 1.22.21 install ok installed fakeroot fakeroot 1.37.1.2-1 install ok installed fasttree fasttree 2.1.11-2 install ok installed file file 1:5.46-5 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-2.3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.3 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-liberation fonts-liberation 1:2.1.5-3 install ok installed fonts-liberation-sans-narrow fonts-liberation-sans-narrow 1:1.07.6-4 install ok installed fonts-lyx fonts-lyx 2.4.3-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed g++ g++ 4:14.2.0-1 install ok installed g++-14 g++-14 14.2.0-19 install ok installed g++-14-x86-64-linux-gnu g++-14-x86-64-linux-gnu 14.2.0-19 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:14.2.0-1 install ok installed gcc gcc 4:14.2.0-1 install ok installed gcc-14 gcc-14 14.2.0-19 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu 14.2.0-19 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-1 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:14.2.0-1 install ok installed gdal-data gdal-data 3.10.3+dfsg-1 install ok installed gdal-plugins:amd64 gdal-plugins 3.10.3+dfsg-1 install ok installed gnupg gnupg 2.4.7-21 install ok installed gnupg-l10n gnupg-l10n 2.4.7-21 install ok installed gnupg-utils gnupg-utils 2.4.7-21+b3 install ok installed gpg gpg 2.4.7-21+b3 install ok installed gpg-agent gpg-agent 2.4.7-21+b3 install ok installed gpg-wks-client gpg-wks-client 2.4.7-21+b3 install ok installed gpgconf gpgconf 2.4.7-21+b3 install ok installed gpgsm gpgsm 2.4.7-21+b3 install ok installed gpgv gpgv 2.4.7-21+b3 install ok installed graphviz graphviz 2.42.4-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed ibverbs-providers:amd64 ibverbs-providers 56.1-1 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed iqtree iqtree 2.0.7+dfsg-1+b2 install ok installed isympy-common isympy-common 1.13.3-5 install ok installed isympy3 isympy3 1.13.3-5 install ok installed javascript-common javascript-common 12+nmu1 install ok installed krb5-locales krb5-locales 1.21.3-5 install ok installed libabsl20240722:amd64 libabsl20240722 20240722.0-4 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-9 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-5 install ok installed libamd-comgr2:amd64 libamd-comgr2 6.0+git20231212.4510c28+dfsg-3+b2 install ok installed libamd3:amd64 libamd3 1:7.10.1+dfsg-1 install ok installed libamdhip64-5:amd64 libamdhip64-5 5.7.1-6 install ok installed libann0 libann0 1.1.2+doc-9+b1 install ok installed libaom3:amd64 libaom3 3.12.1-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.4 install ok installed libarmadillo14 libarmadillo14 1:14.2.3+dfsg-1+b1 install ok installed libarpack2t64:amd64 libarpack2t64 3.9.1-6 install ok installed libasan8:amd64 libasan8 15.2.0-1 install ok installed libassuan9:amd64 libassuan9 3.0.2-2 install ok installed libatomic1:amd64 libatomic1 15.2.0-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.5-1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1900-1 install ok installed libavif16:amd64 libavif16 1.2.1-1.2 install ok installed libbinutils:amd64 libbinutils 2.45-3 install ok installed libblas3:amd64 libblas3 3.12.1-6 install ok installed libblkid1:amd64 libblkid1 2.41.1-1 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-1+b2 install ok installed libblosc2-4:amd64 libblosc2-4 2.17.1+ds-1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc-dev-bin libc-dev-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libc6-dev:amd64 libc6-dev 2.41-12 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcamd3:amd64 libcamd3 1:7.10.1+dfsg-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcc1-0:amd64 libcc1-0 15.2.0-1 install ok installed libccolamd3:amd64 libccolamd3 1:7.10.1+dfsg-1 install ok installed libcdt5:amd64 libcdt5 2.42.4-3 install ok installed libcfitsio10t64:amd64 libcfitsio10t64 4.6.2-2 install ok installed libcgraph6:amd64 libcgraph6 2.42.4-3 install ok installed libcholmod5:amd64 libcholmod5 1:7.10.1+dfsg-1 install ok installed libclang-cpp19 libclang-cpp19 1:19.1.7-3+b1 install ok installed libclone-perl:amd64 libclone-perl 0.47-1+b1 install ok installed libcolamd3:amd64 libcolamd3 1:7.10.1+dfsg-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1 install ok installed libcrypt-urandom-perl libcrypt-urandom-perl 0.54-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.45-3 install ok installed libctf0:amd64 libctf0 2.45-3 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.14.1-2 install ok installed libcurl4t64:amd64 libcurl4t64 8.14.1-2 install ok installed libdata-dump-perl libdata-dump-perl 1.25-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-4 install ok installed libdav1d7:amd64 libdav1d7 1.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libde265-0:amd64 libde265-0 1.0.16-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdeflate0:amd64 libdeflate0 1.23-2 install ok installed libdpkg-perl libdpkg-perl 1.22.21 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.124-2 install ok installed libdrm-common libdrm-common 2.4.124-2 install ok installed libdrm2:amd64 libdrm2 2.4.124-2 install ok installed libdsdp-5.8t64 libdsdp-5.8t64 5.8-10.1 install ok installed libedit2:amd64 libedit2 3.1-20250104-1 install ok installed libelf1t64:amd64 libelf1t64 0.192-4 install ok installed libencode-locale-perl libencode-locale-perl 1.05-3 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.12-stable-10+b1 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.12-stable-10+b1 install ok installed libexpat1:amd64 libexpat1 2.7.1-2 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.7.1-2 install ok installed libfabric1:amd64 libfabric1 2.1.0-1.1 install ok installed libfakeroot:amd64 libfakeroot 1.37.1.2-1 install ok installed libffi-dev:amd64 libffi-dev 3.4.8-2 install ok installed libffi8:amd64 libffi8 3.4.8-2 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.10-2+b1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-4+b4 install ok installed libfile-listing-perl libfile-listing-perl 6.16-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.3 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfreexl1:amd64 libfreexl1 2.0.0-1+b3 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libfuse3-4:amd64 libfuse3-4 3.17.2-3 install ok installed libfyba0t64:amd64 libfyba0t64 4.1.1-11+b1 install ok installed libgav1-1:amd64 libgav1-1 0.19.0-3+b1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-19 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.2-2 install ok installed libgd3:amd64 libgd3 2.3.3-13 install ok installed libgdal36:amd64 libgdal36 3.10.3+dfsg-1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgeos-c1t64:amd64 libgeos-c1t64 3.13.1-1 install ok installed libgeos3.13.1:amd64 libgeos3.13.1 3.13.1-1 install ok installed libgeotiff5:amd64 libgeotiff5 1.7.4-1 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-1 install ok installed libgif7:amd64 libgif7 5.2.2-1+b1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.3-1 install ok installed libglib2.0-data libglib2.0-data 2.84.3-1 install ok installed libglpk40:amd64 libglpk40 5.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-3 install ok installed libgomp1:amd64 libgomp1 15.2.0-1 install ok installed libgpg-error-l10n libgpg-error-l10n 1.55-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.55-2 install ok installed libgpgme11t64:amd64 libgpgme11t64 1.24.2-3 install ok installed libgpgmepp6t64:amd64 libgpgmepp6t64 1.24.2-3 install ok installed libgpm2:amd64 libgpm2 1.20.7-11+b2 install ok installed libgprofng0:amd64 libgprofng0 2.45-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgsl28:amd64 libgsl28 2.8+dfsg-5 install ok installed libgslcblas0:amd64 libgslcblas0 2.8+dfsg-5 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libgts-0.7-5t64:amd64 libgts-0.7-5t64 0.7.6+darcs121130-5.2+b1 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-5.2+b1 install ok installed libgvc6 libgvc6 2.42.4-3 install ok installed libgvpr2:amd64 libgvpr2 2.42.4-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1 install ok installed libhdf4-0-alt:amd64 libhdf4-0-alt 4.3.0-1+b1 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3 install ok installed libheif-plugin-aomenc:amd64 libheif-plugin-aomenc 1.19.8-1 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.19.8-1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.19.8-1 install ok installed libheif-plugin-x265:amd64 libheif-plugin-x265 1.19.8-1 install ok installed libheif1:amd64 libheif1 1.19.8-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhsa-runtime64-1:amd64 libhsa-runtime64-1 6.1.2-3 install ok installed libhsakmt1:amd64 libhsakmt1 6.2.4+ds-1 install ok installed libhtml-form-perl libhtml-form-perl 6.12-1 install ok installed libhtml-format-perl libhtml-format-perl 2.16-2 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.83-1+b2 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.24-1 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.1-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.11-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.16-1 install ok installed libhttp-date-perl libhttp-date-perl 6.06-1 install ok installed libhttp-message-perl libhttp-message-perl 7.00-2 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-2 install ok installed libhwasan0:amd64 libhwasan0 15.2.0-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.12.0-4 install ok installed libhwloc15:amd64 libhwloc15 2.12.0-4 install ok installed libibmad5:amd64 libibmad5 56.1-1 install ok installed libibumad3:amd64 libibumad3 56.1-1 install ok installed libibverbs1:amd64 libibverbs1 56.1-1 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu76:amd64 libicu76 76.1-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libio-compress-brotli-perl libio-compress-brotli-perl 0.004001-2+b3 install ok installed libio-html-perl libio-html-perl 1.004-3 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.089-1 install ok installed libisal2 libisal2 2.31.1-1.1 install ok installed libisl23:amd64 libisl23 0.27-1 install ok installed libitm1:amd64 libitm1 15.2.0-1 install ok installed libjansson4:amd64 libjansson4 2.14-2+b3 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 8.1.3-5 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libjson-c5:amd64 libjson-c5 0.18+ds-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkmlbase1t64:amd64 libkmlbase1t64 1.3.0-12+b2 install ok installed libkmldom1t64:amd64 libkmldom1t64 1.3.0-12+b2 install ok installed libkmlengine1t64:amd64 libkmlengine1t64 1.3.0-12+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed libksba8:amd64 libksba8 1.6.7-2+b1 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.4-3 install ok installed liblapack3:amd64 liblapack3 3.12.1-6 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed libldap-common libldap-common 2.6.10+dfsg-1 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed libllvm17t64:amd64 libllvm17t64 1:17.0.6-22+b2 install ok installed libllvm19:amd64 libllvm19 1:19.1.7-3+b1 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b2 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-7+b1 install ok installed liblsan0:amd64 liblsan0 15.2.0-1 install ok installed libltdl7:amd64 libltdl7 2.5.4-4 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-2 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.14-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-3+b1 install ok installed libmagic-mgc libmagic-mgc 1:5.46-5 install ok installed libmagic1t64:amd64 libmagic1t64 1:5.46-5 install ok installed libmailtools-perl libmailtools-perl 2.22-1 install ok installed libmariadb3:amd64 libmariadb3 1:11.8.2-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.4-2 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.4-2 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.4-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libminizip1t64:amd64 libminizip1t64 1:1.3.dfsg+really1.3.1-1+b1 install ok installed libmount1:amd64 libmount1 2.41.1-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-1+b3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-1 install ok installed libmunge2:amd64 libmunge2 0.5.16-1 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.2.1+dfsg-2 install ok installed libncurses-dev:amd64 libncurses-dev 6.5+20250216-2 install ok installed libncurses6:amd64 libncurses6 6.5+20250216-2 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnet-http-perl libnet-http-perl 6.23-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-2 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.94-3 install ok installed libnetcdf22:amd64 libnetcdf22 1:4.9.3-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1.1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.11.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.11.0-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-2 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-2 install ok installed libnpth0t64:amd64 libnpth0t64 1.8-3 install ok installed libnspr4:amd64 libnspr4 2:4.36-1 install ok installed libnss3:amd64 libnss3 2:3.114-1 install ok installed libnuma1:amd64 libnuma1 2.0.19-1 install ok installed libodbc2:amd64 libodbc2 2.3.12-2 install ok installed libodbccr2:amd64 libodbccr2 2.3.12-2 install ok installed libodbcinst2:amd64 libodbcinst2 2.3.12-2 install ok installed libogdi4.1:amd64 libogdi4.1 4.1.1+ds-5 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.3-2.1 install ok installed libopenmpi40:amd64 libopenmpi40 5.0.7-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.3-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.3-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.3-1 install ok installed libpathplan4:amd64 libpathplan4 2.42.4-3 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-6 install ok installed libpfm4:amd64 libpfm4 4.13.0+git106-g3e4031b-1 install ok installed libpipeline1:amd64 libpipeline1 1.5.8-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpmix2t64:amd64 libpmix2t64 5.0.7-1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.48-1 install ok installed libpoppler147:amd64 libpoppler147 25.03.0-5 install ok installed libpq5:amd64 libpq5 17.5-1 install ok installed libproj25:amd64 libproj25 9.6.0-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpsm2-2 libpsm2-2 11.2.185-2.1 install ok installed libpython3-dev:amd64 libpython3-dev 3.13.5-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.5-1 install ok installed libpython3.13:amd64 libpython3.13 3.13.6-1 install ok installed libpython3.13-dev:amd64 libpython3.13-dev 3.13.6-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.6-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.6-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b2 install ok installed libquadmath0:amd64 libquadmath0 15.2.0-1 install ok installed libraqm0:amd64 libraqm0 0.10.3-1 install ok installed librav1e0.7:amd64 librav1e0.7 0.7.1-9+b2 install ok installed librdmacm1t64:amd64 librdmacm1t64 56.1-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed librttopo1:amd64 librttopo1 1.1.0-4 install ok installed libruby:amd64 libruby 1:3.3+b1 install ok installed libruby3.3:amd64 libruby3.3 3.3.8-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsframe2:amd64 libsframe2 2.45-3 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsm6:amd64 libsm6 2:1.2.6-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-1 install ok installed libspatialite8t64:amd64 libspatialite8t64 5.1.0-3+b2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-19 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-1 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.10.1+dfsg-1 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtbb12:amd64 libtbb12 2022.1.0-1 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2022.1.0-1 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2022.1.0-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.7.0-3 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.32-1 install ok installed libtsan2:amd64 libtsan2 15.2.0-1 install ok installed libubsan1:amd64 libubsan1 15.2.0-1 install ok installed libucx0:amd64 libucx0 1.18.1+ds-2+b1 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libumfpack6:amd64 libumfpack6 1:7.10.1+dfsg-1 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed liburi-perl liburi-perl 5.30-1 install ok installed liburiparser1:amd64 liburiparser1 0.9.8+dfsg-2 install ok installed libuuid1:amd64 libuuid1 2.41.1-1 install ok installed libuv1t64:amd64 libuv1t64 1.50.0-2 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1 install ok installed libwww-perl libwww-perl 6.78-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libx265-215:amd64 libx265-215 4.1-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.16-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxerces-c3.2t64:amd64 libxerces-c3.2t64 3.2.4+debian-1.3+b2 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxft2:amd64 libxft2 2.3.6-1+b4 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-2.1 install ok installed libxml2-dev:amd64 libxml2-dev 2.12.7+dfsg+really2.9.14-2.1 install ok installed libxmu6:amd64 libxmu6 2:1.1.3-3+b4 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b2 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1+b3 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libyuv0:amd64 libyuv0 0.0.1904.20250204-1 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libz3-dev:amd64 libz3-dev 4.13.3-1 install ok installed libze1:amd64 libze1 1.24.1-2 install ok installed libzopfli1 libzopfli1 1.0.3-3 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.12.38-1 install ok installed llvm-19 llvm-19 1:19.1.7-3+b1 install ok installed llvm-19-dev llvm-19-dev 1:19.1.7-3+b1 install ok installed llvm-19-linker-tools llvm-19-linker-tools 1:19.1.7-3+b1 install ok installed llvm-19-runtime llvm-19-runtime 1:19.1.7-3+b1 install ok installed llvm-19-tools llvm-19-tools 1:19.1.7-3+b1 install ok installed login login 1:4.16.0-2+really2.41.1-1 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed lynx lynx 2.9.2-1 install ok installed lynx-common lynx-common 2.9.2-1 install ok installed mafft mafft 7.505-1 install ok installed mailcap mailcap 3.74 install ok installed make make 4.4.1-2 install ok installed manpages manpages 6.9.1-1 install ok installed manpages-dev manpages-dev 6.9.1-1 install ok installed mariadb-common mariadb-common 1:11.8.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.41.1-1 install ok installed mysql-common mysql-common 5.8+1.1.1 install ok installed ncbi-blast+ ncbi-blast+ 2.16.0+ds-7 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-6 install ok installed ncbi-vdb-data ncbi-vdb-data 3.2.1+dfsg-2 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed numba-doc numba-doc 0.61.2+dfsg-1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.3-1 install ok installed openssl openssl 3.5.1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed patch patch 2.8-2 install ok installed perl perl 5.40.1-6 install ok installed perl-base perl-base 5.40.1-6 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-6 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b2 install ok installed pigz pigz 2.8-1 install ok installed pinentry-curses pinentry-curses 1.3.2-3 install ok installed poppler-data poppler-data 0.4.12-1 install ok installed proj-bin proj-bin 9.6.0-1 install ok installed proj-data proj-data 9.6.0-1 install ok installed publicsuffix publicsuffix 20250328.1952-0.1 install ok installed python-babel-localedata python-babel-localedata 2.17.0-1 install ok installed python-biopython-doc python-biopython-doc 1.85+dfsg-4 install ok installed python-matplotlib-data python-matplotlib-data 3.10.1+dfsg1-4 install ok installed python-odf-doc python-odf-doc 1.4.2-4 install ok installed python-odf-tools python-odf-tools 1.4.2-4 install ok installed python-tables-data python-tables-data 3.10.2-2 install ok installed python3 python3 3.13.5-1 install ok installed python3-arrow python3-arrow 1.3.0-1.1 install ok installed python3-asttokens python3-asttokens 3.0.0-2 install ok installed python3-attr python3-attr 25.3.0-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-babel python3-babel 2.17.0-1 install ok installed python3-bcbio-gff python3-bcbio-gff 0.7.1-2 install ok installed python3-biopython python3-biopython 1.85+dfsg-4 install ok installed python3-boto3 python3-boto3 1.37.9-1 install ok installed python3-botocore python3-botocore 1.37.9+repack-1 install ok installed python3-bottleneck python3-bottleneck 1.4.2+ds1-2+b1 install ok installed python3-brotli python3-brotli 1.1.0-2+b7 install ok installed python3-bs4 python3-bs4 4.13.4-2 install ok installed python3-cairo python3-cairo 1.27.0-2 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.17.1-3 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.2-1 install ok installed python3-contourpy python3-contourpy 1.3.1-2 install ok installed python3-cpuinfo python3-cpuinfo 9.0.0+git20221119-3 install ok installed python3-cssselect python3-cssselect 1.3.0-1 install ok installed python3-cvxopt python3-cvxopt 1.3.0+dfsg-1+b9 install ok installed python3-cycler python3-cycler 0.12.1-2 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-decorator python3-decorator 5.2.1-2 install ok installed python3-defusedxml python3-defusedxml 0.7.1-3 install ok installed python3-dendropy python3-dendropy 4.6.1-2 install ok installed python3-dev python3-dev 3.13.5-1 install ok installed python3-et-xmlfile python3-et-xmlfile 2.0.0-1 install ok installed python3-executing python3-executing 2.2.0-0.1 install ok installed python3-fonttools python3-fonttools 4.57.0-1 install ok installed python3-fqdn python3-fqdn 1.5.1-2 install ok installed python3-freetype python3-freetype 2.5.1-2 install ok installed python3-fs python3-fs 2.4.16-7 install ok installed python3-gdal python3-gdal 3.10.3+dfsg-1 install ok installed python3-html5lib python3-html5lib 1.2-2 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-ipdb python3-ipdb 0.13.13-3 install ok installed python3-ipython python3-ipython 8.35.0-1 install ok installed python3-isal python3-isal 1.7.2-1 install ok installed python3-isodate python3-isodate 0.7.0-1 install ok installed python3-isoduration python3-isoduration 20.11.0+git20211126.ae0bd61-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jaraco.text python3-jaraco.text 4.0.0-1 install ok installed python3-jedi python3-jedi 0.19.1+ds1-1 install ok installed python3-jinja2 python3-jinja2 3.1.6-1 install ok installed python3-jmespath python3-jmespath 1.0.1-1 install ok installed python3-json-pointer python3-json-pointer 2.4-3 install ok installed python3-jsonschema python3-jsonschema 4.19.2-6 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-2 install ok installed python3-kiwisolver python3-kiwisolver 1.4.7-3+b1 install ok installed python3-legacy-cgi python3-legacy-cgi 2.6.3-1 install ok installed python3-llvmlite python3-llvmlite 0.44.0-1 install ok installed python3-lxml:amd64 python3-lxml 5.4.0-1 install ok installed python3-lz4 python3-lz4 4.4.0+dfsg-2 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.10.1+dfsg1-4 install ok installed python3-matplotlib-inline python3-matplotlib-inline 0.1.7-1 install ok installed python3-minimal python3-minimal 3.13.5-1 install ok installed python3-more-itertools python3-more-itertools 10.7.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numba python3-numba 0.61.2+dfsg-1 install ok installed python3-numexpr python3-numexpr 2.11.0-1 install ok installed python3-numpy python3-numpy 1:2.2.4+ds-1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.4+ds-1 install ok installed python3-odf python3-odf 1.4.2-4 install ok installed python3-olefile python3-olefile 0.47-1 install ok installed python3-openpyxl python3-openpyxl 3.1.5+dfsg-2 install ok installed python3-packaging python3-packaging 25.0-1 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-9 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-9 install ok installed python3-parso python3-parso 0.8.4-1 install ok installed python3-pexpect python3-pexpect 4.9-3 install ok installed python3-pil:amd64 python3-pil 11.1.0-5+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 11.1.0-5+b1 install ok installed python3-pip python3-pip 25.2+dfsg-1 install ok installed python3-pkg-resources python3-pkg-resources 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installed python3-requests python3-requests 2.32.3+dfsg-5 install ok installed python3-rfc3339-validator python3-rfc3339-validator 0.1.4-2 install ok installed python3-rfc3986-validator python3-rfc3986-validator 0.1.1-2 install ok installed python3-rfc3987 python3-rfc3987 1.3.8-3 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-rpds-py python3-rpds-py 0.21.0-2+b1 install ok installed python3-s3transfer python3-s3transfer 0.11.4-1 install ok installed python3-schedule python3-schedule 1.2.2-1 install ok installed python3-scipy python3-scipy 1.15.3-1 install ok installed python3-seaborn python3-seaborn 0.13.2-5 install ok installed python3-setuptools python3-setuptools 78.1.1-0.1 install ok installed python3-six python3-six 1.17.0-1 install ok installed python3-soupsieve python3-soupsieve 2.7-1 install ok installed python3-stack-data python3-stack-data 0.6.3-1 install ok installed python3-sympy python3-sympy 1.13.3-5 install ok installed python3-tables python3-tables 3.10.2-2 install ok installed python3-tables-lib python3-tables-lib 3.10.2-2+b1 install ok installed python3-tk:amd64 python3-tk 3.13.5-1 install ok installed python3-tqdm python3-tqdm 4.67.1-5 install ok installed python3-traitlets python3-traitlets 5.14.3+really5.14.3-1 install ok installed python3-treetime python3-treetime 0.11.4-1 install ok installed python3-typeguard python3-typeguard 4.4.2-1 install ok installed python3-typeshed python3-typeshed 0.0~git20241223.ea91db2-3 install ok installed python3-typing-extensions python3-typing-extensions 4.14.1-1 install ok installed python3-tz python3-tz 2025.2-3 install ok installed python3-ufolib2 python3-ufolib2 0.17.1+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b4 install ok installed python3-uritemplate python3-uritemplate 4.1.1-3 install ok installed python3-urllib3 python3-urllib3 2.3.0-3 install ok installed python3-wcwidth python3-wcwidth 0.2.13+dfsg1-1 install ok installed python3-webcolors python3-webcolors 1.13-1 install ok installed python3-webencodings python3-webencodings 0.5.1-5 install ok installed python3-wheel python3-wheel 0.46.1-2 install ok installed python3-xopen python3-xopen 1.7.0-3 install ok installed python3-yaml python3-yaml 6.0.2-1+b2 install ok installed python3-zipp python3-zipp 3.21.0-1 install ok installed python3-zopfli python3-zopfli 0.2.3.post1-1+b1 install ok installed python3-zstandard python3-zstandard 0.23.0-5 install ok installed python3.13 python3.13 3.13.6-1 install ok installed python3.13-dev python3.13-dev 3.13.6-1 install ok installed python3.13-minimal python3.13-minimal 3.13.6-1 install ok installed python3.13-tk python3.13-tk 3.13.6-1 install ok installed rake rake 13.2.1-1 install ok installed raxml raxml 8.2.13+dfsg-2+b1 install ok installed readline-common readline-common 8.2-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed ruby ruby 1:3.3+b1 install ok installed ruby-csv ruby-csv 3.3.4-1 install ok installed ruby-did-you-mean ruby-did-you-mean 1.6.3-2 install ok installed ruby-net-telnet ruby-net-telnet 0.2.0-1 install ok installed ruby-ruby2-keywords ruby-ruby2-keywords 0.0.5-1 install ok installed ruby-rubygems ruby-rubygems 3.6.7-2 install ok installed ruby-sdbm:amd64 ruby-sdbm 1.0.0-5+b7 install ok installed ruby-webrick ruby-webrick 1.9.1-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.3-2 install ok installed ruby3.3 ruby3.3 3.3.8-2 install ok installed rubygems-integration rubygems-integration 1.19 install ok installed sed sed 4.9-2 install ok installed seqmagick seqmagick 0.8.6-3 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed shared-mime-info shared-mime-info 2.4-5+b2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 3.0.2+dfsg-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tabix tabix 1.21+ds-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-8 install ok installed tzdata tzdata 2025b-5 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed unixodbc-common unixodbc-common 2.3.12-2 install ok installed unzip unzip 6.0-29 install ok installed util-linux util-linux 2.41.1-1 install ok installed vcftools vcftools 0.1.16-3+b1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+24 install ok installed xdg-user-dirs xdg-user-dirs 0.18-2 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed xz-utils xz-utils 5.8.1-1 install ok installed zip zip 3.0-15 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 2m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', 'remove', '--allow-remove-essential', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fasttree', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gdal-data', 'gdal-plugins:amd64', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'gpgv', 'graphviz', 'ibverbs-providers:amd64', 'iqtree', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20240722:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libamd-comgr2:amd64', 'libamd3:amd64', 'libamdhip64-5:amd64', 'libann0', 'libaom3:amd64', 'libarmadillo14', 'libarpack2t64:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libcc1-0:amd64', 'libccolamd3:amd64', 'libcdt5:amd64', 'libcfitsio10t64:amd64', 'libcgraph6:amd64', 'libcholmod5:amd64', 'libclang-cpp19', 'libclone-perl:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfabric1:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfuse3-4:amd64', 'libfyba0t64:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdal36:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgeos-c1t64:amd64', 'libgeos3.13.1:amd64', 'libgeotiff5:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpgme11t64:amd64', 'libgpgmepp6t64:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libisal2', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1t64:amd64', 'libkmldom1t64:amd64', 'libkmlengine1t64:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm17t64:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libminizip1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmunge2:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnetcdf22:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnpth0t64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc2:amd64', 'libodbccr2:amd64', 'libodbcinst2:amd64', 'libogdi4.1:amd64', 'libopenjp2-7:amd64', 'libopenmpi40:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpoppler147:amd64', 'libpq5:amd64', 'libproj25:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libspatialite8t64:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libucx0:amd64', 'libumfpack6:amd64', 'libunistring5:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-215:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2t64:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmu6:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libze1:amd64', 'libzopfli1', 'linux-libc-dev', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pigz', 'pinentry-curses', 'poppler-data', 'proj-bin', 'proj-data', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-arrow', 'python3-asttokens', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dendropy', 'python3-dev', 'python3-et-xmlfile', 'python3-executing', 'python3-fonttools', 'python3-fqdn', 'python3-freetype', 'python3-fs', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-inflect', 'python3-ipdb', 'python3-ipython', 'python3-isal', 'python3-isodate', 'python3-isoduration', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jedi', 'python3-jinja2', 'python3-jmespath', 'python3-json-pointer', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pooch', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pydot', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygraphviz', 'python3-pygtrie', 'python3-pyparsing', 'python3-pytz', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rfc3339-validator', 'python3-rfc3986-validator', 'python3-rfc3987', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-stack-data', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tqdm', 'python3-traitlets', 'python3-treetime', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-uritemplate', 'python3-urllib3', 'python3-wcwidth', 'python3-webcolors', 'python3-webencodings', 'python3-wheel', 'python3-xopen', 'python3-yaml', 'python3-zipp', 'python3-zopfli', 'python3-zstandard', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'rake', 'raxml', 'readline-common', 'rpcsvc-proto', 'ruby', 'ruby-csv', 'ruby-did-you-mean', 'ruby-net-telnet', 'ruby-ruby2-keywords', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'seqmagick', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tabix', 'tk8.6-blt2.5', 'unicode-data', 'unixodbc-common', 'unzip', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'augur'] 2m47.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser augur binfmt-support binutils binutils-common binutils-gold binutils-gold-x86-64-linux-gnu binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dirmngr dpkg-dev fakeroot fasttree file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-liberation fonts-liberation-sans-narrow fonts-lyx fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv graphviz ibverbs-providers iqtree isympy-common isympy3 javascript-common krb5-locales libabsl20240722 libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 libarmadillo14 libarpack2t64 libasan8 libassuan9 libatomic1 libauthen-sasl-perl libavif16 libbinutils libblas3 libblosc1 libblosc2-4 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcamd3 libcc1-0 libccolamd3 libcdt5 libcfitsio10t64 libcgraph6 libcholmod5 libclang-cpp19 libclone-perl libcolamd3 libcom-err2 libcrypt-dev libcrypt-urandom-perl libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm2 libdsdp-5.8t64 libedit2 libelf1t64 libencode-locale-perl libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libfakeroot libffi-dev libffi8 libfftw3-double3 libfile-fcntllock-perl libfile-listing-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfuse3-4 libfyba0t64 libgav1-1 libgcc-14-dev libgcrypt20 libgd3 libgdal36 libgdbm-compat4t64 libgdbm6t64 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran5 libgif7 libglib2.0-0t64 libglib2.0-data libglpk40 libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpgme11t64 libgpgmepp6t64 libgpm2 libgprofng0 libgraphite2-3 libgsl28 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5t64 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomenc libheif-plugin-dav1d libheif-plugin-libde265 libheif-plugin-x265 libheif1 libhsa-runtime64-1 libhsakmt1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libice6 libicu76 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libisal2 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libk5crypto3 libkeyutils1 libkmlbase1t64 libkmldom1t64 libkmlengine1t64 libkrb5-3 libkrb5support0 libksba8 liblab-gamut1 liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm17t64 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzo2-2 libmagic-mgc libmagic1t64 libmailtools-perl libmariadb3 libmbedcrypto16 libmbedtls21 libmbedx509-7 libminizip1t64 libmpc3 libmpfr6 libmunge2 libncbi-vdb3 libncurses-dev libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf22 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnl-3-200 libnl-route-3-200 libnpth0t64 libnspr4 libnss3 libnuma1 libodbc2 libodbccr2 libodbcinst2 libogdi4.1 libopenjp2-7 libopenmpi40 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpciaccess0 libperl5.40 libpfm4 libpipeline1 libpixman-1-0 libpmix2t64 libpng16-16t64 libpoppler147 libpq5 libproj25 libpsl5t64 libpsm2-2 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.7 librdmacm1t64 libreadline8t64 librtmp1 librttopo1 libruby libruby3.3 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe2 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libssh2-1t64 libstdc++-14-dev libsuitesparseconfig7 libsvtav1enc2 libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtirpc-common libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libucx0 libumfpack6 libunistring5 liburi-perl liburiparser1 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-215 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxerces-c3.2t64 libxext6 libxft2 libxml2 libxml2-dev libxmu6 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 libz3-4 libz3-dev libze1 libzopfli1 linux-libc-dev llvm-19 llvm-19-dev llvm-19-linker-tools llvm-19-runtime llvm-19-tools lynx lynx-common mafft mailcap make manpages manpages-dev mariadb-common media-types mysql-common ncbi-blast+ ncbi-data ncbi-vdb-data netbase numba-doc ocl-icd-libopencl1 openssl patch perl perl-modules-5.40 perl-openssl-defaults pigz pinentry-curses poppler-data proj-bin proj-data publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-arrow python3-asttokens python3-attr python3-autocommand python3-babel python3-bcbio-gff python3-biopython python3-boto3 python3-botocore python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cpuinfo python3-cssselect python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dendropy python3-dev python3-et-xmlfile python3-executing python3-fonttools python3-fqdn python3-freetype python3-fs python3-gdal python3-html5lib python3-idna python3-inflect python3-ipdb python3-ipython python3-isal python3-isodate python3-isoduration python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jedi python3-jinja2 python3-jmespath python3-json-pointer python3-jsonschema python3-jsonschema-specifications python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-matplotlib-inline python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-platformdirs python3-pooch python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pydot python3-pyfaidx python3-pyfastx python3-pygments python3-pygraphviz python3-pygtrie python3-pyparsing python3-pytz python3-referencing python3-reportlab python3-requests python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-rlpycairo python3-rpds-py python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-soupsieve python3-stack-data python3-sympy python3-tables python3-tables-lib python3-tk python3-tqdm python3-traitlets python3-treetime python3-typeguard python3-typeshed python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-uritemplate python3-urllib3 python3-wcwidth python3-webcolors python3-webencodings python3-wheel python3-xopen python3-yaml python3-zipp python3-zopfli python3-zstandard python3.13 python3.13-dev python3.13-minimal python3.13-tk rake raxml readline-common rpcsvc-proto ruby ruby-csv ruby-did-you-mean ruby-net-telnet ruby-ruby2-keywords ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration seqmagick sgml-base shared-mime-info sphinx-rtd-theme-common tabix tk8.6-blt2.5 unicode-data unixodbc-common unzip vcftools w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 576 to remove and 0 not upgraded. After this operation, 2659 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69291 files and directories currently installed.) Removing iqtree (2.0.7+dfsg-1+b2) ... Removing libopenmpi40:amd64 (5.0.7-1) ... Removing libucx0:amd64 (1.18.1+ds-2+b1) ... Removing libfabric1:amd64 (2.1.0-1.1) ... Removing ibverbs-providers:amd64 (56.1-1) ... Removing librdmacm1t64:amd64 (56.1-1) ... Removing libibverbs1:amd64 (56.1-1) ... Removing python3-gdal (3.10.3+dfsg-1) ... Removing libgdal36:amd64 (3.10.3+dfsg-1) ... Removing libpoppler147:amd64 (25.03.0-5) ... Removing libgpgmepp6t64:amd64 (1.24.2-3) ... Removing libgpgme11t64:amd64 (1.24.2-3) ... Removing gnupg (2.4.7-21) ... Removing augur (24.4.0-1) ... Removing binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing build-essential (12.12) ... Removing g++ (4:14.2.0-1) ... Removing gcc (4:14.2.0-1) ... Removing dpkg-dev (1.22.21) ... Removing g++-x86-64-linux-gnu (4:14.2.0-1) ... Removing gcc-x86-64-linux-gnu (4:14.2.0-1) ... Removing seqmagick (0.8.6-3) ... Removing python3-treetime (0.11.4-1) ... Removing python3-seaborn (0.13.2-5) ... Removing python3-matplotlib (3.10.1+dfsg1-4) ... Removing python3-pil.imagetk:amd64 (11.1.0-5+b1) ... Removing python3-tk:amd64 (3.13.5-1) ... Removing blt (2.5.3+dfsg-8) ... Removing bzip2 (1.0.8-6) ... Removing python3-boto3 (1.37.9-1) ... Removing python3-s3transfer (0.11.4-1) ... Removing python3-botocore (1.37.9+repack-1) ... Removing cpp (4:14.2.0-1) ... Removing cpp-x86-64-linux-gnu (4:14.2.0-1) ... Removing fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing fasttree (2.1.11-2) ... Removing file (1:5.46-5) ... Removing python3-pygraphviz (1.14-2) ... Removing python3-pydot (2.0.0-3) ... Removing graphviz (2.42.4-3) ... Removing libgvc6 (2.42.4-3) ... Removing libpangocairo-1.0-0:amd64 (1.56.3-1) ... Removing libpangoft2-1.0-0:amd64 (1.56.3-1) ... Removing libpango-1.0-0:amd64 (1.56.3-1) ... Removing fontconfig (2.15.0-2.3) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-8) ... Removing python3.13-tk (3.13.6-1) ... Removing libtk8.6:amd64 (8.6.16-1) ... Removing libxft2:amd64 (2.3.6-1+b4) ... Removing libgd3:amd64 (2.3.3-13) ... Removing python-matplotlib-data (3.10.1+dfsg1-4) ... Removing fonts-dejavu-extra (2.37-8) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing numba-doc (0.61.2+dfsg-1) ... Removing sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing fonts-liberation (1:2.1.5-3) ... Removing fonts-liberation-sans-narrow (1:1.07.6-4) ... Removing fonts-lyx (2.4.3-1) ... Removing g++-14 (14.2.0-19) ... Removing g++-14-x86-64-linux-gnu (14.2.0-19) ... Removing gdal-data (3.10.3+dfsg-1) ... Removing gdal-plugins:amd64 (3.10.3+dfsg-1) ... Removing gnupg-l10n (2.4.7-21) ... Removing gnupg-utils (2.4.7-21+b3) ... Removing gpg-wks-client (2.4.7-21+b3) ... Removing gpg (2.4.7-21+b3) ... Removing gpg-agent (2.4.7-21+b3) ... Removing gpgsm (2.4.7-21+b3) ... Removing gpgv (2.4.7-21+b3) ... Removing isympy3 (1.13.3-5) ... Removing isympy-common (1.13.3-5) ... Removing javascript-common (12+nmu1) ... Removing krb5-locales (1.21.3-5) ... Removing libavif16:amd64 (1.2.1-1.2) ... Removing libgav1-1:amd64 (0.19.0-3+b1) ... Removing libabsl20240722:amd64 (20240722.0-4) ... Removing libhdf4-0-alt:amd64 (4.3.0-1+b1) ... Removing python3-tables (3.10.2-2) ... Removing python3-tables-lib (3.10.2-2+b1) ... Removing libalgorithm-merge-perl (0.08-5) ... Removing libalgorithm-diff-xs-perl (0.04-9) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libamdhip64-5:amd64 (5.7.1-6) ... Removing libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Removing python3-cvxopt (1.3.0+dfsg-1+b9) ... Removing libumfpack6:amd64 (1:7.10.1+dfsg-1) ... Removing libcholmod5:amd64 (1:7.10.1+dfsg-1) ... Removing libann0 (1.1.2+doc-9+b1) ... Removing libheif-plugin-aomenc:amd64 (1.19.8-1) ... Removing libaom3:amd64 (3.12.1-1) ... Removing libarmadillo14 (1:14.2.3+dfsg-1+b1) ... Removing libarpack2t64:amd64 (3.9.1-6) ... Removing libstdc++-14-dev:amd64 (14.2.0-19) ... Removing pinentry-curses (1.3.2-3) ... Removing shared-mime-info (2.4-5+b2) ... Removing libauthen-sasl-perl (2.1900-1) ... Removing python3-numba (0.61.2+dfsg-1) ... Removing python3-pandas (2.2.3+dfsg-9) ... Removing python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Removing libdsdp-5.8t64 (5.8-10.1) ... Removing libblosc1:amd64 (1.21.5+ds-1+b2) ... Removing libblosc2-4:amd64 (2.17.1+ds-1) ... Removing lynx (2.9.2-1) ... Removing libio-compress-brotli-perl (0.004001-2+b3) ... Removing python3-dev (3.13.5-1) ... Removing python3.13-dev (3.13.6-1) ... Removing libpython3-dev:amd64 (3.13.5-1) ... Removing libpython3.13-dev:amd64 (3.13.6-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing llvm-19-dev (1:19.1.7-3+b1) ... Removing libncurses-dev:amd64 (6.5+20250216-2) ... Removing libexpat1-dev:amd64 (2.7.1-2) ... Removing libc6-dev:amd64 (2.41-12) ... Removing libc-dev-bin (2.41-12) ... Removing libcamd3:amd64 (1:7.10.1+dfsg-1) ... Removing libccolamd3:amd64 (1:7.10.1+dfsg-1) ... Removing libgvpr2:amd64 (2.42.4-3) ... Removing libcgraph6:amd64 (2.42.4-3) ... Removing libcdt5:amd64 (2.42.4-3) ... Removing libcfitsio10t64:amd64 (4.6.2-2) ... Removing libclang-cpp19 (1:19.1.7-3+b1) ... Removing libglpk40:amd64 (5.0-2) ... Removing libcolamd3:amd64 (1:7.10.1+dfsg-1) ... Removing libpq5:amd64 (17.5-1) ... Removing libogdi4.1:amd64 (4.1.1+ds-5) ... Removing libtirpc3t64:amd64 (1.3.6+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libcrypt-dev:amd64 (1:4.4.38-1) ... Removing libcrypt-urandom-perl (0.54-1) ... Removing libxerces-c3.2t64:amd64 (3.2.4+debian-1.3+b2) ... Removing libspatialite8t64:amd64 (5.1.0-3+b2) ... Removing python3-llvmlite (0.44.0-1) ... Removing llvm-19 (1:19.1.7-3+b1) ... Removing libdata-dump-perl (1.25-1) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-4) ... Removing libheif-plugin-x265:amd64 (1.19.8-1) ... Removing libgeotiff5:amd64 (1.7.4-1) ... Removing tabix (1.21+ds-1) ... Removing libdpkg-perl (1.22.21) ... Removing libhsa-runtime64-1:amd64 (6.1.2-3) ... Removing libhsakmt1:amd64 (6.2.4+ds-1) ... Removing libdrm-amdgpu1:amd64 (2.4.124-2) ... Removing libdrm2:amd64 (2.4.124-2) ... Removing libdrm-common (2.4.124-2) ... Removing llvm-19-runtime (1:19.1.7-3+b1) ... Removing llvm-19-linker-tools (1:19.1.7-3+b1) ... Removing libllvm19:amd64 (1:19.1.7-3+b1) ... Removing libllvm17t64:amd64 (1:17.0.6-22+b2) ... Removing libedit2:amd64 (3.1-20250104-1) ... Removing libelf1t64:amd64 (0.192-4) ... Removing libpmix2t64:amd64 (5.0.7-1) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing python3-jsonschema (4.19.2-6) ... Removing python3-jsonschema-specifications (2023.12.1-2) ... Removing python3-referencing (0.36.2-1) ... Removing python3-rpds-py (0.21.0-2+b1) ... Removing python3-pip (25.2+dfsg-1) ... Removing python3-wheel (0.46.1-2) ... Removing python3-ipdb (0.13.13-3) ... Removing libfakeroot:amd64 (1.37.1.2-1) ... Removing libffi-dev:amd64 (3.4.8-2) ... Removing ruby-sdbm:amd64 (1.0.0-5+b7) ... Removing libpython3.13:amd64 (3.13.6-1) ... Removing libfftw3-double3:amd64 (3.3.10-2+b1) ... Removing libfile-fcntllock-perl (0.22-4+b4) ... Removing libhtml-format-perl (2.16-2) ... Removing libfont-afm-perl (1.20-4) ... Removing libfreexl1:amd64 (2.0.0-1+b3) ... Removing libfuse3-4:amd64 (3.17.2-3) ... Removing libfyba0t64:amd64 (4.1.1-11+b1) ... Removing python3-openpyxl (3.1.5+dfsg-2) ... Removing mailcap (3.74) ... Removing vcftools (0.1.16-3+b1) ... Removing libhttp-daemon-perl (6.16-1) ... Removing libmailtools-perl (2.22-1) ... Removing libnet-smtp-ssl-perl (1.04-2) ... Removing ncbi-blast+ (2.16.0+ds-7) ... Removing librttopo1:amd64 (1.1.0-4) ... Removing libgeos-c1t64:amd64 (3.13.1-1) ... Removing libgeos3.13.1:amd64 (3.13.1-1) ... Removing libgif7:amd64 (5.2.2-1+b1) ... Removing libglib2.0-data (2.84.3-1) ... Removing libgpg-error-l10n (1.55-2) ... Removing libgpm2:amd64 (1.20.7-11+b2) ... Removing libgsl28:amd64 (2.8+dfsg-5) ... Removing libgslcblas0:amd64 (2.8+dfsg-5) ... Removing libgts-bin (0.7.6+darcs121130-5.2+b1) ... Removing libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ... Removing libnetcdf22:amd64 (1:4.9.3-1) ... Removing libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Removing libhtml-form-perl (6.12-1) ... Removing libhtscodecs2:amd64 (1.6.1-2) ... Removing libhwloc-plugins:amd64 (2.12.0-4) ... Removing libtbb12:amd64 (2022.1.0-1) ... Removing libtbbbind-2-5:amd64 (2022.1.0-1) ... Removing libhwloc15:amd64 (2.12.0-4) ... Removing libibmad5:amd64 (56.1-1) ... Removing libibumad3:amd64 (56.1-1) ... Removing libxaw7:amd64 (2:1.0.16-1) ... 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Removing python3-brotli (1.1.0-2+b7) ... Removing python3-fs (2.4.16-7) ... Removing python3-lz4 (4.4.0+dfsg-2) ... Removing python3-sympy (1.13.3-5) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-platformdirs (4.3.7-1) ... Removing python3-unicodedata2 (15.1.0+ds-1+b4) ... Removing unicode-data (15.1.0-1) ... Removing libruby3.3:amd64 (3.3.8-2) ... Removing rake (13.2.1-1) ... Removing ruby (1:3.3+b1) ... Removing ruby-rubygems (3.6.7-2) ... Removing python3-scipy (1.15.3-1) ... Removing python3-numpy (1:2.2.4+ds-1) ... Removing liblapack3:amd64 (3.12.1-6) ... Removing libblas3:amd64 (3.12.1-6) ... Removing libwww-perl (6.78-1) ... Removing liblwp-protocol-https-perl (6.14-1) ... Removing libhttp-negotiate-perl (6.01-2) ... Removing libheif-plugin-libde265:amd64 (1.19.8-1) ... Removing libde265-0:amd64 (1.0.16-1) ... Removing libfile-listing-perl (6.16-1) ... Removing python3-ufolib2 (0.17.1+dfsg1-1) ... Removing libhttp-cookies-perl (6.11-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libnet-http-perl (6.23-1) ... Removing libio-socket-ssl-perl (2.089-1) ... Removing libnet-ssleay-perl:amd64 (1.94-3) ... Removing libgfortran5:amd64 (15.2.0-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.83-1+b2) ... Removing libhtml-tagset-perl (3.24-1) ... Removing libruby:amd64 (1:3.3+b1) ... Removing libtry-tiny-perl (0.32-1) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing perl-openssl-defaults:amd64 (7+b2) ... Removing python3-attr (25.3.0-1) ... Removing python3-decorator (5.2.1-2) ... Removing python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Removing ruby-csv (3.3.4-1) ... Removing ruby-did-you-mean (1.6.3-2) ... Removing ruby-net-telnet (0.2.0-1) ... Removing ruby-ruby2-keywords (0.0.5-1) ... Removing ruby-xmlrpc (0.3.3-2) ... Removing ruby-webrick (1.9.1-1) ... Removing ruby3.3 (3.3.8-2) ... Removing rubygems-integration (1.19) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (7.00-2) ... Removing libclone-perl:amd64 (0.47-1+b1) ... Removing libencode-locale-perl (1.05-3) ... Removing python3 (3.13.5-1) ... Removing python3.13 (3.13.6-1) ... Removing libhttp-date-perl (6.06-1) ... Removing liburi-perl (5.30-1) ... Removing libio-html-perl (1.004-3) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing libpython3-stdlib:amd64 (3.13.5-1) ... Removing python3-minimal (3.13.5-1) ... Removing libtimedate-perl (2.3300-2) ... Removing openssl (3.5.1-1) ... Removing python3.13-minimal (3.13.6-1) ... Removing libexpat1:amd64 (2.7.1-2) ... Removing libpython3.13-stdlib:amd64 (3.13.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.4.8-2) ... Removing perl (5.40.1-6) ... Removing libperl5.40:amd64 (5.40.1-6) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing libpython3.13-minimal:amd64 (3.13.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing perl-modules-5.40 (5.40.1-6) ... Removing readline-common (8.2-6) ... Processing triggers for libc-bin (2.41-12) ... 2m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', 'remove', '--allow-remove-essential', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fasttree', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gdal-data', 'gdal-plugins:amd64', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'gpgv', 'graphviz', 'ibverbs-providers:amd64', 'iqtree', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20240722:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libamd-comgr2:amd64', 'libamd3:amd64', 'libamdhip64-5:amd64', 'libann0', 'libaom3:amd64', 'libarmadillo14', 'libarpack2t64:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libcc1-0:amd64', 'libccolamd3:amd64', 'libcdt5:amd64', 'libcfitsio10t64:amd64', 'libcgraph6:amd64', 'libcholmod5:amd64', 'libclang-cpp19', 'libclone-perl:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfabric1:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfuse3-4:amd64', 'libfyba0t64:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdal36:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgeos-c1t64:amd64', 'libgeos3.13.1:amd64', 'libgeotiff5:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpgme11t64:amd64', 'libgpgmepp6t64:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libisal2', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1t64:amd64', 'libkmldom1t64:amd64', 'libkmlengine1t64:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm17t64:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libminizip1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmunge2:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnetcdf22:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnpth0t64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc2:amd64', 'libodbccr2:amd64', 'libodbcinst2:amd64', 'libogdi4.1:amd64', 'libopenjp2-7:amd64', 'libopenmpi40:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpoppler147:amd64', 'libpq5:amd64', 'libproj25:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libspatialite8t64:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libucx0:amd64', 'libumfpack6:amd64', 'libunistring5:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-215:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2t64:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmu6:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libze1:amd64', 'libzopfli1', 'linux-libc-dev', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pigz', 'pinentry-curses', 'poppler-data', 'proj-bin', 'proj-data', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-arrow', 'python3-asttokens', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dendropy', 'python3-dev', 'python3-et-xmlfile', 'python3-executing', 'python3-fonttools', 'python3-fqdn', 'python3-freetype', 'python3-fs', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-inflect', 'python3-ipdb', 'python3-ipython', 'python3-isal', 'python3-isodate', 'python3-isoduration', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jedi', 'python3-jinja2', 'python3-jmespath', 'python3-json-pointer', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pooch', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pydot', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygraphviz', 'python3-pygtrie', 'python3-pyparsing', 'python3-pytz', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rfc3339-validator', 'python3-rfc3986-validator', 'python3-rfc3987', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-stack-data', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tqdm', 'python3-traitlets', 'python3-treetime', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-uritemplate', 'python3-urllib3', 'python3-wcwidth', 'python3-webcolors', 'python3-webencodings', 'python3-wheel', 'python3-xopen', 'python3-yaml', 'python3-zipp', 'python3-zopfli', 'python3-zstandard', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'rake', 'raxml', 'readline-common', 'rpcsvc-proto', 'ruby', 'ruby-csv', 'ruby-did-you-mean', 'ruby-net-telnet', 'ruby-ruby2-keywords', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'seqmagick', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tabix', 'tk8.6-blt2.5', 'unicode-data', 'unixodbc-common', 'unzip', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'augur'] 2m47.2s INFO: Running scripts post_remove 2m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_remove_exceptions'] 2m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_remove_exceptions'] 2m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg', '--purge', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fasttree', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gdal-data', 'gdal-plugins:amd64', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'gpgv', 'graphviz', 'ibverbs-providers:amd64', 'iqtree', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20240722:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libamd-comgr2:amd64', 'libamd3:amd64', 'libamdhip64-5:amd64', 'libann0', 'libaom3:amd64', 'libarmadillo14', 'libarpack2t64:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libcc1-0:amd64', 'libccolamd3:amd64', 'libcdt5:amd64', 'libcfitsio10t64:amd64', 'libcgraph6:amd64', 'libcholmod5:amd64', 'libclang-cpp19', 'libclone-perl:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfabric1:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfuse3-4:amd64', 'libfyba0t64:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdal36:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgeos-c1t64:amd64', 'libgeos3.13.1:amd64', 'libgeotiff5:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpgme11t64:amd64', 'libgpgmepp6t64:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libisal2', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1t64:amd64', 'libkmldom1t64:amd64', 'libkmlengine1t64:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm17t64:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libminizip1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmunge2:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnetcdf22:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnpth0t64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc2:amd64', 'libodbccr2:amd64', 'libodbcinst2:amd64', 'libogdi4.1:amd64', 'libopenjp2-7:amd64', 'libopenmpi40:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpoppler147:amd64', 'libpq5:amd64', 'libproj25:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libspatialite8t64:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libucx0:amd64', 'libumfpack6:amd64', 'libunistring5:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-215:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2t64:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmu6:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libze1:amd64', 'libzopfli1', 'linux-libc-dev', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pigz', 'pinentry-curses', 'poppler-data', 'proj-bin', 'proj-data', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-arrow', 'python3-asttokens', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dendropy', 'python3-dev', 'python3-et-xmlfile', 'python3-executing', 'python3-fonttools', 'python3-fqdn', 'python3-freetype', 'python3-fs', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-inflect', 'python3-ipdb', 'python3-ipython', 'python3-isal', 'python3-isodate', 'python3-isoduration', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jedi', 'python3-jinja2', 'python3-jmespath', 'python3-json-pointer', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pooch', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pydot', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygraphviz', 'python3-pygtrie', 'python3-pyparsing', 'python3-pytz', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rfc3339-validator', 'python3-rfc3986-validator', 'python3-rfc3987', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-stack-data', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tqdm', 'python3-traitlets', 'python3-treetime', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-uritemplate', 'python3-urllib3', 'python3-wcwidth', 'python3-webcolors', 'python3-webencodings', 'python3-wheel', 'python3-xopen', 'python3-yaml', 'python3-zipp', 'python3-zopfli', 'python3-zstandard', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'rake', 'raxml', 'readline-common', 'rpcsvc-proto', 'ruby', 'ruby-csv', 'ruby-did-you-mean', 'ruby-net-telnet', 'ruby-ruby2-keywords', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'seqmagick', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tabix', 'tk8.6-blt2.5', 'unicode-data', 'unixodbc-common', 'unzip', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 2m47.7s DUMP: (Reading database ... 5078 files and directories currently installed.) Purging configuration files for adduser (3.152) ... Purging configuration files for binfmt-support (2.2.2-7) ... Purging configuration files for binutils (2.45-3) ... Purging configuration files for binutils-common:amd64 (2.45-3) ... dpkg: warning: ignoring request to remove binutils-gold which isn't installed dpkg: warning: ignoring request to remove binutils-gold-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:14.2.0-1) ... dpkg: warning: ignoring request to remove cpp-14 which isn't installed dpkg: warning: ignoring request to remove cpp-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which isn't installed Purging configuration files for dirmngr (2.4.7-21+b3) ... Purging configuration files for dpkg-dev (1.22.21) ... dpkg: warning: ignoring request to remove fakeroot which isn't installed dpkg: warning: ignoring request to remove fasttree which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.15.0-2.3) ... Purging configuration files for fontconfig-config (2.15.0-2.3) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which isn't installed Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed dpkg: warning: ignoring request to remove fonts-liberation-sans-narrow which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-14 which isn't installed dpkg: warning: ignoring request to remove g++-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-14 which isn't installed dpkg: warning: ignoring request to remove gcc-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gdal-data which isn't installed dpkg: warning: ignoring request to remove gdal-plugins which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed dpkg: warning: ignoring request to remove gnupg-l10n which isn't installed dpkg: warning: ignoring request to remove gnupg-utils which isn't installed Purging configuration files for gpg (2.4.7-21+b3) ... Purging configuration files for gpg-agent (2.4.7-21+b3) ... dpkg: warning: ignoring request to remove gpg-wks-client which isn't installed dpkg: warning: ignoring request to remove gpgconf which isn't installed dpkg: warning: ignoring request to remove gpgsm which isn't installed dpkg: warning: ignoring request to remove gpgv which isn't installed Purging configuration files for graphviz (2.42.4-3) ... Purging configuration files for ibverbs-providers:amd64 (56.1-1) ... dpkg: warning: ignoring request to remove iqtree which isn't installed dpkg: warning: ignoring request to remove isympy-common which isn't installed dpkg: warning: ignoring request to remove isympy3 which isn't installed Purging configuration files for javascript-common (12+nmu1) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libabsl20240722 which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libamd-comgr2 which isn't installed dpkg: warning: ignoring request to remove libamd3 which isn't installed dpkg: warning: ignoring request to remove libamdhip64-5 which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libarmadillo14 which isn't installed dpkg: warning: ignoring request to remove libarpack2t64 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libassuan9 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libavif16 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libblosc2-4 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcamd3 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libccolamd3 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcfitsio10t64 which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libcholmod5 which isn't installed dpkg: warning: ignoring request to remove libclang-cpp19 which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libcolamd3 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ... dpkg: warning: ignoring request to remove libcrypt-urandom-perl which isn't installed dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdav1d7 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdsdp-5.8t64 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed Purging configuration files for libfakeroot:amd64 (1.37.1.2-1) ... dpkg: warning: ignoring request to remove libffi-dev which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreexl1 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed 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warning: ignoring request to remove libgif7 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.84.3-1) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libglpk40 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpg-error-l10n which isn't installed dpkg: warning: ignoring request to remove libgpg-error0 which isn't installed dpkg: warning: ignoring request to remove libgpgme11t64 which isn't installed dpkg: warning: ignoring request to remove libgpgmepp6t64 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: 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python3.13-tk which isn't installed dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-csv which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-ruby2-keywords which isn't installed dpkg: warning: ignoring request to remove ruby-rubygems which isn't installed dpkg: warning: ignoring request to remove ruby-sdbm which isn't installed dpkg: warning: ignoring request to remove ruby-webrick which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby3.3 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove seqmagick which isn't installed Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for shared-mime-info (2.4-5+b2) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove tabix which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for unixodbc-common (2.3.12-2) ... dpkg: warning: ignoring request to remove unzip which isn't installed dpkg: warning: ignoring request to remove vcftools which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+24) ... Purging configuration files for xdg-user-dirs (0.18-2) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 2m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg', '--purge', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fasttree', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gdal-data', 'gdal-plugins:amd64', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'gpgv', 'graphviz', 'ibverbs-providers:amd64', 'iqtree', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20240722:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libamd-comgr2:amd64', 'libamd3:amd64', 'libamdhip64-5:amd64', 'libann0', 'libaom3:amd64', 'libarmadillo14', 'libarpack2t64:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libcc1-0:amd64', 'libccolamd3:amd64', 'libcdt5:amd64', 'libcfitsio10t64:amd64', 'libcgraph6:amd64', 'libcholmod5:amd64', 'libclang-cpp19', 'libclone-perl:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfabric1:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfuse3-4:amd64', 'libfyba0t64:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdal36:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgeos-c1t64:amd64', 'libgeos3.13.1:amd64', 'libgeotiff5:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpgme11t64:amd64', 'libgpgmepp6t64:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libisal2', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1t64:amd64', 'libkmldom1t64:amd64', 'libkmlengine1t64:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm17t64:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libminizip1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmunge2:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnetcdf22:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnpth0t64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc2:amd64', 'libodbccr2:amd64', 'libodbcinst2:amd64', 'libogdi4.1:amd64', 'libopenjp2-7:amd64', 'libopenmpi40:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpoppler147:amd64', 'libpq5:amd64', 'libproj25:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libspatialite8t64:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libucx0:amd64', 'libumfpack6:amd64', 'libunistring5:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-215:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2t64:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmu6:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libze1:amd64', 'libzopfli1', 'linux-libc-dev', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pigz', 'pinentry-curses', 'poppler-data', 'proj-bin', 'proj-data', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-arrow', 'python3-asttokens', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dendropy', 'python3-dev', 'python3-et-xmlfile', 'python3-executing', 'python3-fonttools', 'python3-fqdn', 'python3-freetype', 'python3-fs', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-inflect', 'python3-ipdb', 'python3-ipython', 'python3-isal', 'python3-isodate', 'python3-isoduration', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jedi', 'python3-jinja2', 'python3-jmespath', 'python3-json-pointer', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pooch', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pydot', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygraphviz', 'python3-pygtrie', 'python3-pyparsing', 'python3-pytz', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rfc3339-validator', 'python3-rfc3986-validator', 'python3-rfc3987', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-stack-data', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tqdm', 'python3-traitlets', 'python3-treetime', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-uritemplate', 'python3-urllib3', 'python3-wcwidth', 'python3-webcolors', 'python3-webencodings', 'python3-wheel', 'python3-xopen', 'python3-yaml', 'python3-zipp', 'python3-zopfli', 'python3-zstandard', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'rake', 'raxml', 'readline-common', 'rpcsvc-proto', 'ruby', 'ruby-csv', 'ruby-did-you-mean', 'ruby-net-telnet', 'ruby-ruby2-keywords', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'seqmagick', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tabix', 'tk8.6-blt2.5', 'unicode-data', 'unixodbc-common', 'unzip', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 2m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg', '--purge', 'augur'] 2m47.7s DUMP: dpkg: warning: ignoring request to remove augur which isn't installed 2m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg', '--purge', 'augur'] 2m47.7s INFO: Running scripts post_purge 2m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_purge_exceptions'] 2m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_purge_exceptions'] 2m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg', '--purge', '--pending'] 2m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg', '--purge', '--pending'] 2m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg', '--remove', '--pending'] 2m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg', '--remove', '--pending'] 2m47.8s INFO: Running scripts post_test 2m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_test_exceptions'] 2m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'tmp/scripts/post_test_exceptions'] 2m47.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 2m48.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 2m48.1s DEBUG: No broken symlinks as far as we can find. 2m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg-divert', '--list'] 2m48.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 2m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'dpkg-divert', '--list'] 2m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', 'clean'] 2m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgjo56s99', 'apt-get', 'clean'] 2m48.2s DEBUG: Recording chroot state 2m48.8s INFO: PASS: Installation and purging test. 2m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/shm'] 2m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/shm'] 2m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/console'] 2m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/console'] 2m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/ptmx'] 2m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/ptmx'] 2m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/pts'] 2m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/dev/pts'] 2m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/proc'] 2m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgjo56s99/proc'] 2m49.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 2m49.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgjo56s99'] 2m49.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpgjo56s99 2m49.1s INFO: PASS: All tests. 2m49.1s INFO: piuparts run ends. ret=0 End: 2025-08-18 11:10:47 GMT