Start: 2025-08-18 01:49:52 GMT Package: cnvkit Version: 0.9.12-1 Installed-Size: 94677 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-pomegranate (>= 0.15), python3-pyfaidx, python3-pysam, python3-reportlab, python3-scipy, python3-sklearn, python3:any, r-bioc-dnacopy Description: Copy number variant detection from targeted DNA sequencing Homepage: https://cnvkit.readthedocs.org Description-md5: 0b8ab5ba6be9de3379277ab7a92a7b5d Section: science Priority: optional Filename: pool/main/c/cnvkit/cnvkit_0.9.12-1_all.deb Size: 19867944 MD5sum: 1bab2eed9e247c45124199c37a680e14 SHA256: ae91c2bce847494e0e295aad3888522f2575eef877bd24355d13ac8236ceac8a Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt cnvkit=0.9.12-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508101417~1.6.0-7-g17c4ea32 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt cnvkit=0.9.12-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-38-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.147-1 (2025-08-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmptyks1pfe 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmptyks1pfe 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmptyks1pfe/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', 'update'] 0m2.0s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [145 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9792 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6532 kB] Fetched 16.5 MB in 1s (16.6 MB/s) Reading package lists... 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', 'update'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', '-yf', 'dist-upgrade'] 0m5.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bsdutils libapt-pkg7.0 libaudit-common libaudit1 libblkid1 libgcc-s1 liblastlog2-2 libmount1 libsmartcols1 libstdc++6 libuuid1 login mount tzdata util-linux 17 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 6138 kB of archives. After this operation, 444 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.1-1 [110 kB] Get:3 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.1-1 [28.6 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.1-1 [37.7 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.1-1 [171 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.1-1 [209 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.1-1 [143 kB] Get:8 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.1-1 [1236 kB] Get:9 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.1-1 [162 kB] Get:10 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-1 [52.0 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-1 [71.7 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-1 [736 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.4 [1182 kB] Get:14 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.4 [1478 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.0.5-1 [13.5 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.0.5-1 [59.4 kB] Get:17 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.1-1 [115 kB] Get:18 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Preconfiguring packages ... Fetched 6138 kB in 0s (73.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.1-1_amd64.deb ... Unpacking bsdutils (1:2.41.1-1) over (1:2.41-5) ... Setting up bsdutils (1:2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41.1-1_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.1-1) over (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.1-1_amd64.deb ... Unpacking libuuid1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libuuid1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.1-1_amd64.deb ... Unpacking libblkid1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libblkid1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.1-1_amd64.deb ... Unpacking libmount1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libmount1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.1-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libsmartcols1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.1-1_amd64.deb ... Unpacking util-linux (2.41.1-1) over (2.41-5) ... Setting up util-linux (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../mount_2.41.1-1_amd64.deb ... Unpacking mount (2.41.1-1) over (2.41-5) ... Selecting previously unselected package gcc-15-base:amd64. Preparing to unpack .../gcc-15-base_15.2.0-1_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-1) ... Setting up gcc-15-base:amd64 (15.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-1_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-1) over (14.2.0-19) ... Setting up libgcc-s1:amd64 (15.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-1_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-1) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.4_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.4) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.4_amd64.deb ... Unpacking apt (3.1.4) over (3.0.3) ... Setting up apt (3.1.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.5-1_all.deb ... Unpacking libaudit-common (1:4.0.5-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.5-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.5-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.1-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.1-1) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Aug 18 01:49:57 UTC 2025. Universal Time is now: Mon Aug 18 01:49:57 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up mount (2.41.1-1) ... Setting up login (1:4.16.0-2+really2.41.1-1) ... Processing triggers for libc-bin (2.41-12) ... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', '-yf', 'dist-upgrade'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s DUMP: c65a7cfccda97528624f171002515e4e - 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s INFO: Running scripts post_setup 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_forbid_home'] 0m7.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_forbid_home'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_zz_backports'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_setup_zz_backports'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', 'clean'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', 'clean'] 0m7.1s DEBUG: Recording chroot state 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.5s DUMP: install ok installed apt apt 3.1.4 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41.1-1 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.4 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.5-1 install ok installed libblkid1:amd64 libblkid1 2.41.1-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41.1-1 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg-divert', '--list'] 0m7.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg-divert', '--list'] 0m7.5s INFO: Running scripts is_testable 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/is_testable_uninstallable'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/is_testable_uninstallable'] 0m7.5s INFO: apt-cache does not know about any of the requested packages 0m7.5s INFO: Running scripts pre_test 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_test_exceptions'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_test_exceptions'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_test_root_password'] 0m7.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_test_root_password'] 0m7.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 0m7.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 0m8.1s DEBUG: No broken symlinks as far as we can find. 0m8.1s INFO: Running scripts pre_install 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_database-server'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_database-server'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_exceptions'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_extras'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_extras'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 0m8.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 0m9.0s DEBUG: No broken symlinks as far as we can find. 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-cache', 'policy'] 0m9.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-cache', 'policy'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-cache', 'policy', 'cnvkit'] 0m9.7s DUMP: cnvkit: Installed: (none) Candidate: 0.9.12-1 Version table: 0.9.12-1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-cache', 'policy', 'cnvkit'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', '-y', 'install', 'cnvkit=0.9.12-1'] 2m29.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser binfmt-support binutils binutils-common binutils-gold binutils-gold-x86-64-linux-gnu binutils-x86-64-linux-gnu blt build-essential bzip2 bzip2-doc ca-certificates cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-liberation fonts-liberation-sans-narrow fonts-lyx fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv graphviz icu-devtools isympy-common isympy3 javascript-common krb5-locales libabsl20240722 libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libann0 libaom3 libapparmor1 libarmadillo14 libarpack2t64 libasan8 libassuan9 libatomic1 libauthen-sasl-perl libavif16 libbinutils libblas-dev libblas3 libblosc1 libblosc2-4 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcdt5 libcfitsio10t64 libcgraph6 libclang-cpp19 libclone-perl libcom-err2 libcrypt-dev libcrypt-urandom-perl libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdeflate-dev libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libencode-locale-perl libexpat1 libexpat1-dev libfakeroot libffi-dev libffi8 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfyba0t64 libgav1-1 libgbm1 libgcc-14-dev libgcrypt20 libgd3 libgdal36 libgdbm-compat4t64 libgdbm6t64 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran-14-dev libgfortran5 libgif7 libgl1 libgl1-mesa-dri libgles2 libglib2.0-0t64 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpgme11t64 libgpgmepp6t64 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5t64 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomenc libheif-plugin-dav1d libheif-plugin-libde265 libheif-plugin-x265 libheif1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libice6 libicu-dev libicu76 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libk5crypto3 libkeyutils1 libkmlbase1t64 libkmldom1t64 libkmlengine1t64 libkrb5-3 libkrb5support0 libksba8 liblab-gamut1 liblapack-dev liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmailtools-perl libmariadb3 libmbedcrypto16 libmbedtls21 libmbedx509-7 libminizip1t64 libmpc3 libmpfr6 libncbi-vdb3 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf22 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnspr4 libnss3 libnuma1 libodbc2 libodbccr2 libodbcinst2 libogdi4.1 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.40 libpfm4 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng-tools libpng16-16t64 libpoppler147 libpq5 libproc2-0 libproj25 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.7 libreadline-dev libreadline8t64 librtmp1 librttopo1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe2 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libssh2-1t64 libstdc++-14-dev libsvtav1enc2 libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libunistring5 liburi-perl liburiparser1 libuv1t64 libvulkan1 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libx265-215 libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxerces-c3.2t64 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxml2-dev libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 libz3-dev libze1 libzopfli1 libzstd-dev linux-libc-dev linux-sysctl-defaults llvm-19 llvm-19-dev llvm-19-linker-tools llvm-19-runtime llvm-19-tools luit make manpages manpages-dev mariadb-common media-types mesa-libgallium mesa-vulkan-drivers mysql-common ncbi-blast+ ncbi-data ncbi-vdb-data netbase numba-doc ocl-icd-libopencl1 openssl patch perl perl-modules-5.40 perl-openssl-defaults pinentry-curses pkgconf pkgconf-bin poppler-data procps proj-bin proj-data psmisc publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-attr python3-autocommand python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cpuinfo python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-gdal python3-html5lib python3-idna python3-inflect python3-iniconfig python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-joblib python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-platformdirs python3-pluggy python3-pomegranate python3-pooch python3-psutil python3-pydot python3-pyfaidx python3-pygments python3-pygraphviz python3-pyparsing python3-pysam python3-pytest python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-sklearn python3-sklearn-lib python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-threadpoolctl python3-tk python3-tqdm python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-webencodings python3-wheel python3-yaml python3-zopfli python3.13 python3.13-dev python3.13-minimal python3.13-tk r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rpcsvc-proto sensible-utils sgml-base shared-mime-info sphinx-rtd-theme-common sq tk8.6-blt2.5 ucf unicode-data unixodbc-common unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev zutty Suggested packages: cron quota binutils-doc gprofng-gui blt-demo cpp-doc gcc-14-locales cpp-14-doc cython-doc default-dbus-session-bus | dbus-session-bus dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring debian-tag2upload-keyring fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-14-multilib gcc-14-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu gfortran-multilib gfortran-doc gfortran-14-multilib gfortran-14-doc libcoarrays-dev gpg-wks-server parcimonie xloadimage scdaemon tpm2daemon gsfonts graphviz-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl liblapack-doc libc-devtools glibc-doc git bzr rng-tools libgd-tools gdbm-l10n geotiff-bin gdal-bin libgeotiff-epsg low-memory-monitor gnutls-bin gpm krb5-doc krb5-user libhdf4-alt-dev hdf4-tools libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libhwloc-contrib-plugins icu-doc libjs-jquery-ui-docs liblcms2-utils libcrypt-ssleay-perl liblzma-doc ncurses-doc odbc-postgresql tdsodbc ogdi-bin pciutils readline-doc libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libstdc++-14-doc tcl8.6 tk8.6 libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools llvm-19-doc make-doc man-browser opencl-icd ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl debhelper pinentry-doc poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 python3-igraph raxml samtools t-coffee wise python-bottleneck-doc python-charset-normalizer-doc python-cycler-doc python3-genshi python-jinja2-doc python-joblib-doc llvmlite-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft gir1.2-gtk-3.0 gir1.2-gtk-4.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 nvidia-cuda-toolkit python-numpy-doc python-openpyxl-doc python-pandas-doc python3-statsmodels python-pil-doc python3-setuptools python-pomegranate-doc python3-paramiko python-pygments-doc ttf-bitstream-vera python-pygraphviz-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3-dap python-sklearn-doc texlive-fonts-extra python-sympy-doc python3-netcdf4 python-tables-doc vitables tix python3-tk-dbg python3.13-venv python3.13-doc elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-latex-recommended texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-s4arrays r-bioc-sparsearray r-bioc-delayedarray r-bioc-hdf5array r-bioc-genomicranges r-bioc-pwalign r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit mozilla | www-browser sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core The following NEW packages will be installed: adduser binfmt-support binutils binutils-common binutils-gold binutils-gold-x86-64-linux-gnu binutils-x86-64-linux-gnu blt build-essential bzip2 bzip2-doc ca-certificates cnvkit cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-liberation fonts-liberation-sans-narrow fonts-lyx fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv graphviz icu-devtools isympy-common isympy3 javascript-common krb5-locales libabsl20240722 libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libann0 libaom3 libapparmor1 libarmadillo14 libarpack2t64 libasan8 libassuan9 libatomic1 libauthen-sasl-perl libavif16 libbinutils libblas-dev libblas3 libblosc1 libblosc2-4 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcdt5 libcfitsio10t64 libcgraph6 libclang-cpp19 libclone-perl libcom-err2 libcrypt-dev libcrypt-urandom-perl libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdeflate-dev libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libencode-locale-perl libexpat1 libexpat1-dev libfakeroot libffi-dev libffi8 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfyba0t64 libgav1-1 libgbm1 libgcc-14-dev libgcrypt20 libgd3 libgdal36 libgdbm-compat4t64 libgdbm6t64 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran-14-dev libgfortran5 libgif7 libgl1 libgl1-mesa-dri libgles2 libglib2.0-0t64 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpgme11t64 libgpgmepp6t64 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5t64 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomenc libheif-plugin-dav1d libheif-plugin-libde265 libheif-plugin-x265 libheif1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libice6 libicu-dev libicu76 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libk5crypto3 libkeyutils1 libkmlbase1t64 libkmldom1t64 libkmlengine1t64 libkrb5-3 libkrb5support0 libksba8 liblab-gamut1 liblapack-dev liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmailtools-perl libmariadb3 libmbedcrypto16 libmbedtls21 libmbedx509-7 libminizip1t64 libmpc3 libmpfr6 libncbi-vdb3 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf22 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnspr4 libnss3 libnuma1 libodbc2 libodbccr2 libodbcinst2 libogdi4.1 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.40 libpfm4 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng-tools libpng16-16t64 libpoppler147 libpq5 libproc2-0 libproj25 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.7 libreadline-dev libreadline8t64 librtmp1 librttopo1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe2 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libssh2-1t64 libstdc++-14-dev libsvtav1enc2 libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libunistring5 liburi-perl liburiparser1 libuv1t64 libvulkan1 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libx265-215 libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxerces-c3.2t64 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxml2-dev libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 libz3-dev libze1 libzopfli1 libzstd-dev linux-libc-dev linux-sysctl-defaults llvm-19 llvm-19-dev llvm-19-linker-tools llvm-19-runtime llvm-19-tools luit make manpages manpages-dev mariadb-common media-types mesa-libgallium mesa-vulkan-drivers mysql-common ncbi-blast+ ncbi-data ncbi-vdb-data netbase numba-doc ocl-icd-libopencl1 openssl patch perl perl-modules-5.40 perl-openssl-defaults pinentry-curses pkgconf pkgconf-bin poppler-data procps proj-bin proj-data psmisc publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-attr python3-autocommand python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cpuinfo python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-gdal python3-html5lib python3-idna python3-inflect python3-iniconfig python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-joblib python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-platformdirs python3-pluggy python3-pomegranate python3-pooch python3-psutil python3-pydot python3-pyfaidx python3-pygments python3-pygraphviz python3-pyparsing python3-pysam python3-pytest python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-sklearn python3-sklearn-lib python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-threadpoolctl python3-tk python3-tqdm python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-webencodings python3-wheel python3-yaml python3-zopfli python3.13 python3.13-dev python3.13-minimal python3.13-tk r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rpcsvc-proto sensible-utils sgml-base shared-mime-info sphinx-rtd-theme-common sq tk8.6-blt2.5 ucf unicode-data unixodbc-common unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev zutty 0 upgraded, 599 newly installed, 0 to remove and 0 not upgraded. Need to get 636 MB of archives. After this operation, 2783 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get:2 http://deb.debian.org/debian forky/main amd64 dbus-bin amd64 1.16.2-2 [80.0 kB] Get:3 http://deb.debian.org/debian forky/main amd64 dbus-session-bus-common all 1.16.2-2 [52.3 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libapparmor1 amd64 4.1.0-1 [43.7 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:6 http://deb.debian.org/debian forky/main amd64 dbus-daemon amd64 1.16.2-2 [159 kB] Get:7 http://deb.debian.org/debian forky/main amd64 adduser all 3.152 [191 kB] Get:8 http://deb.debian.org/debian forky/main amd64 dbus-system-bus-common all 1.16.2-2 [53.5 kB] Get:9 http://deb.debian.org/debian forky/main amd64 dbus amd64 1.16.2-2 [71.6 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian forky/main amd64 binfmt-support amd64 2.2.2-7 [64.3 kB] Get:12 http://deb.debian.org/debian forky/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:13 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:14 http://deb.debian.org/debian forky/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get:16 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get:17 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:18 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get:19 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:22 http://deb.debian.org/debian forky/main amd64 readline-common all 8.2-6 [69.4 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get:25 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get:26 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:27 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:28 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:29 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-1 [862 kB] Get:31 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:32 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:33 http://deb.debian.org/debian forky/main amd64 linux-sysctl-defaults all 4.14 [5756 B] Get:34 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:35 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:36 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:37 http://deb.debian.org/debian forky/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Get:38 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get:39 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get:40 http://deb.debian.org/debian forky/main amd64 krb5-locales all 1.21.3-5 [101 kB] Get:41 http://deb.debian.org/debian forky/main amd64 manpages all 6.9.1-1 [1393 kB] Get:42 http://deb.debian.org/debian forky/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Get:43 http://deb.debian.org/debian forky/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:44 http://deb.debian.org/debian forky/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:45 http://deb.debian.org/debian forky/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Get:46 http://deb.debian.org/debian forky/main amd64 perl amd64 5.40.1-6 [267 kB] Get:47 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:48 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:49 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get:50 http://deb.debian.org/debian forky/main amd64 xz-utils amd64 5.8.1-1 [660 kB] Get:51 http://deb.debian.org/debian forky/main amd64 libsframe2 amd64 2.45-3 [79.3 kB] Get:52 http://deb.debian.org/debian forky/main amd64 binutils-common amd64 2.45-3 [2558 kB] Get:53 http://deb.debian.org/debian forky/main amd64 libbinutils amd64 2.45-3 [539 kB] Get:54 http://deb.debian.org/debian forky/main amd64 libgprofng0 amd64 2.45-3 [809 kB] Get:55 http://deb.debian.org/debian forky/main amd64 libctf-nobfd0 amd64 2.45-3 [157 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libctf0 amd64 2.45-3 [89.7 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:58 http://deb.debian.org/debian forky/main amd64 binutils-x86-64-linux-gnu amd64 2.45-3 [1043 kB] Get:59 http://deb.debian.org/debian forky/main amd64 binutils-gold-x86-64-linux-gnu amd64 2.44-2 [1197 kB] Get:60 http://deb.debian.org/debian forky/main amd64 binutils-gold amd64 2.44-2 [202 kB] Get:61 http://deb.debian.org/debian forky/main amd64 binutils amd64 2.45-3 [266 kB] Get:62 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:63 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:64 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.48-1 [282 kB] Get:65 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:66 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:67 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:68 http://deb.debian.org/debian forky/main amd64 fonts-liberation all 1:2.1.5-3 [1475 kB] Get:69 http://deb.debian.org/debian forky/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:70 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+24 [217 kB] Get:71 http://deb.debian.org/debian forky/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:72 http://deb.debian.org/debian forky/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:73 http://deb.debian.org/debian forky/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:74 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:75 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:76 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:77 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:78 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:79 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:80 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:81 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:82 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:83 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:84 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:85 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:86 http://deb.debian.org/debian forky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get:87 http://deb.debian.org/debian forky/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get:88 http://deb.debian.org/debian forky/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB] Get:89 http://deb.debian.org/debian forky/main amd64 linux-libc-dev all 6.12.38-1 [2627 kB] Get:90 http://deb.debian.org/debian forky/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:91 http://deb.debian.org/debian forky/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:92 http://deb.debian.org/debian forky/main amd64 libc6-dev amd64 2.41-12 [1991 kB] Get:93 http://deb.debian.org/debian forky/main amd64 libisl23 amd64 0.27-1 [659 kB] Get:94 http://deb.debian.org/debian forky/main amd64 libmpfr6 amd64 4.2.2-1 [729 kB] Get:95 http://deb.debian.org/debian forky/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Get:96 http://deb.debian.org/debian forky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19 [11.0 MB] Get:97 http://deb.debian.org/debian forky/main amd64 cpp-14 amd64 14.2.0-19 [1280 B] Get:98 http://deb.debian.org/debian forky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Get:99 http://deb.debian.org/debian forky/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Get:100 http://deb.debian.org/debian forky/main amd64 libcc1-0 amd64 15.2.0-1 [42.7 kB] Get:101 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 15.2.0-1 [140 kB] Get:102 http://deb.debian.org/debian forky/main amd64 libitm1 amd64 15.2.0-1 [26.5 kB] Get:103 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 15.2.0-1 [9492 B] Get:104 http://deb.debian.org/debian forky/main amd64 libasan8 amd64 15.2.0-1 [2780 kB] Get:105 http://deb.debian.org/debian forky/main amd64 liblsan0 amd64 15.2.0-1 [1248 kB] Get:106 http://deb.debian.org/debian forky/main amd64 libtsan2 amd64 15.2.0-1 [2492 kB] Get:107 http://deb.debian.org/debian forky/main amd64 libubsan1 amd64 15.2.0-1 [1108 kB] Get:108 http://deb.debian.org/debian forky/main amd64 libhwasan0 amd64 15.2.0-1 [1538 kB] Get:109 http://deb.debian.org/debian forky/main amd64 libquadmath0 amd64 15.2.0-1 [146 kB] Get:110 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:111 http://deb.debian.org/debian forky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19 [21.4 MB] Get:112 http://deb.debian.org/debian forky/main amd64 gcc-14 amd64 14.2.0-19 [540 kB] Get:113 http://deb.debian.org/debian forky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Get:114 http://deb.debian.org/debian forky/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Get:115 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:116 http://deb.debian.org/debian forky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19 [12.1 MB] Get:117 http://deb.debian.org/debian forky/main amd64 g++-14 amd64 14.2.0-19 [22.5 kB] Get:118 http://deb.debian.org/debian forky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:119 http://deb.debian.org/debian forky/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Get:120 http://deb.debian.org/debian forky/main amd64 make amd64 4.4.1-2 [463 kB] Get:121 http://deb.debian.org/debian forky/main amd64 libdpkg-perl all 1.22.21 [650 kB] Get:122 http://deb.debian.org/debian forky/main amd64 patch amd64 2.8-2 [134 kB] Get:123 http://deb.debian.org/debian forky/main amd64 dpkg-dev all 1.22.21 [1338 kB] Get:124 http://deb.debian.org/debian forky/main amd64 build-essential amd64 12.12 [4624 B] Get:125 http://deb.debian.org/debian forky/main amd64 bzip2-doc all 1.0.8-6 [505 kB] Get:126 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.2-1 [128 kB] Get:127 http://deb.debian.org/debian forky/main amd64 python3.13-tk amd64 3.13.5-2 [108 kB] Get:128 http://deb.debian.org/debian forky/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get:129 http://deb.debian.org/debian forky/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Get:130 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:131 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:132 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:133 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get:134 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:135 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.84.3-1 [1515 kB] Get:136 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:137 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:138 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get:139 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:140 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:141 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:142 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:143 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:144 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:145 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:146 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:147 http://deb.debian.org/debian forky/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get:148 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:149 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:150 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:151 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:152 http://deb.debian.org/debian forky/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:153 http://deb.debian.org/debian forky/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get:154 http://deb.debian.org/debian forky/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:155 http://deb.debian.org/debian forky/main amd64 python3-reportlab all 4.4.2-1 [1167 kB] Get:156 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:157 http://deb.debian.org/debian forky/main amd64 xml-core all 0.19 [20.1 kB] Get:158 http://deb.debian.org/debian forky/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:159 http://deb.debian.org/debian forky/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get:160 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:161 http://deb.debian.org/debian forky/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:162 http://deb.debian.org/debian forky/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get:163 http://deb.debian.org/debian forky/main amd64 python-matplotlib-data all 3.10.1+dfsg1-4 [2737 kB] Get:164 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:165 http://deb.debian.org/debian forky/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:166 http://deb.debian.org/debian forky/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get:167 http://deb.debian.org/debian forky/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get:168 http://deb.debian.org/debian forky/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get:169 http://deb.debian.org/debian forky/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get:170 http://deb.debian.org/debian forky/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Get:171 http://deb.debian.org/debian forky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get:172 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get:173 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get:174 http://deb.debian.org/debian forky/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB] Get:175 http://deb.debian.org/debian forky/main amd64 python3-lxml amd64 5.4.0-1 [1297 kB] Get:176 http://deb.debian.org/debian forky/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB] Get:177 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:178 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1 [16.3 MB] Get:179 http://deb.debian.org/debian forky/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:180 http://deb.debian.org/debian forky/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get:181 http://deb.debian.org/debian forky/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get:182 http://deb.debian.org/debian forky/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get:183 http://deb.debian.org/debian forky/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b4 [299 kB] Get:184 http://deb.debian.org/debian forky/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get:185 http://deb.debian.org/debian forky/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get:186 http://deb.debian.org/debian forky/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:187 http://deb.debian.org/debian forky/main amd64 python3-fonttools amd64 4.57.0-1 [1438 kB] Get:188 http://deb.debian.org/debian forky/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get:189 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get:190 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get:191 http://deb.debian.org/debian forky/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-4 [23.8 MB] Get:192 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-3 [152 kB] Get:193 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get:194 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get:195 http://deb.debian.org/debian forky/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get:196 http://deb.debian.org/debian forky/main amd64 python3-joblib all 1.4.2-4 [216 kB] Get:197 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:198 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get:199 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.14.1-1 [91.3 kB] Get:200 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get:201 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:202 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:203 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:204 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get:205 http://deb.debian.org/debian forky/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:206 http://deb.debian.org/debian forky/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:207 http://deb.debian.org/debian forky/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Get:208 http://deb.debian.org/debian forky/main amd64 python3-pomegranate amd64 0.15.0-1+b1 [3298 kB] Get:209 http://deb.debian.org/debian forky/main amd64 python3-pyfaidx all 0.8.1.3-2 [29.1 kB] Get:210 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:211 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:212 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:213 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:214 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get:215 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:216 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:217 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:218 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:219 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:220 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:221 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:222 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:223 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:224 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get:225 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:226 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:227 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:228 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:229 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:230 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:231 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get:232 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get:233 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get:234 http://deb.debian.org/debian forky/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get:235 http://deb.debian.org/debian forky/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get:236 http://deb.debian.org/debian forky/main amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [3980 kB] Get:237 http://deb.debian.org/debian forky/main amd64 python3-sklearn all 1.4.2+dfsg-8 [2248 kB] Get:238 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-15 [235 kB] Get:239 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-29 [173 kB] Get:240 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:241 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:242 http://deb.debian.org/debian forky/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:243 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get:244 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:245 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB] Get:246 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:247 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get:248 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:249 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB] Get:250 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB] Get:251 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB] Get:252 http://deb.debian.org/debian forky/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:253 http://deb.debian.org/debian forky/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:254 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:255 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:256 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:257 http://deb.debian.org/debian forky/main amd64 r-base-core amd64 4.5.1-1 [28.7 MB] Get:258 http://deb.debian.org/debian forky/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get:259 http://deb.debian.org/debian forky/main amd64 r-bioc-dnacopy amd64 1.80.0-2 [498 kB] Get:260 http://deb.debian.org/debian forky/main amd64 cnvkit all 0.9.12-1 [19.9 MB] Get:261 http://deb.debian.org/debian forky/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB] Get:262 http://deb.debian.org/debian forky/main amd64 gpgconf amd64 2.4.7-21+b3 [129 kB] Get:263 http://deb.debian.org/debian forky/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get:264 http://deb.debian.org/debian forky/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB] Get:265 http://deb.debian.org/debian forky/main amd64 dirmngr amd64 2.4.7-21+b3 [384 kB] Get:266 http://deb.debian.org/debian forky/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:267 http://deb.debian.org/debian forky/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:268 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:269 http://deb.debian.org/debian forky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:270 http://deb.debian.org/debian forky/main amd64 fonts-liberation-sans-narrow all 1:1.07.6-4 [182 kB] Get:271 http://deb.debian.org/debian forky/main amd64 gdal-data all 3.10.3+dfsg-1 [403 kB] Get:272 http://deb.debian.org/debian forky/main amd64 gdal-plugins amd64 3.10.3+dfsg-1 [181 kB] Get:273 http://deb.debian.org/debian forky/main amd64 libgfortran-14-dev amd64 14.2.0-19 [880 kB] Get:274 http://deb.debian.org/debian forky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19 [11.7 MB] Get:275 http://deb.debian.org/debian forky/main amd64 gfortran-14 amd64 14.2.0-19 [14.5 kB] Get:276 http://deb.debian.org/debian forky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get:277 http://deb.debian.org/debian forky/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get:278 http://deb.debian.org/debian forky/main amd64 gnupg-l10n all 2.4.7-21 [747 kB] Get:279 http://deb.debian.org/debian forky/main amd64 gpg amd64 2.4.7-21+b3 [634 kB] Get:280 http://deb.debian.org/debian forky/main amd64 pinentry-curses amd64 1.3.2-3 [87.8 kB] Get:281 http://deb.debian.org/debian forky/main amd64 gpg-agent amd64 2.4.7-21+b3 [271 kB] Get:282 http://deb.debian.org/debian forky/main amd64 gpgsm amd64 2.4.7-21+b3 [275 kB] Get:283 http://deb.debian.org/debian forky/main amd64 gnupg all 2.4.7-21 [417 kB] Get:284 http://deb.debian.org/debian forky/main amd64 gpg-wks-client amd64 2.4.7-21+b3 [108 kB] Get:285 http://deb.debian.org/debian forky/main amd64 gpgv amd64 2.4.7-21+b3 [241 kB] Get:286 http://deb.debian.org/debian forky/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:287 http://deb.debian.org/debian forky/main amd64 libcdt5 amd64 2.42.4-3 [40.3 kB] Get:288 http://deb.debian.org/debian forky/main amd64 libcgraph6 amd64 2.42.4-3 [64.0 kB] Get:289 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get:290 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get:291 http://deb.debian.org/debian forky/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:292 http://deb.debian.org/debian forky/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get:293 http://deb.debian.org/debian forky/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get:294 http://deb.debian.org/debian forky/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:295 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1904.20250204-1 [174 kB] Get:296 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.2.1-1.2 [133 kB] Get:297 http://deb.debian.org/debian forky/main amd64 libheif-plugin-dav1d amd64 1.19.8-1 [11.7 kB] Get:298 http://deb.debian.org/debian forky/main amd64 libde265-0 amd64 1.0.16-1 [189 kB] Get:299 http://deb.debian.org/debian forky/main amd64 libheif-plugin-libde265 amd64 1.19.8-1 [15.3 kB] Get:300 http://deb.debian.org/debian forky/main amd64 libheif1 amd64 1.19.8-1 [520 kB] Get:301 http://deb.debian.org/debian forky/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get:302 http://deb.debian.org/debian forky/main amd64 libgd3 amd64 2.3.3-13 [126 kB] Get:303 http://deb.debian.org/debian forky/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get:304 http://deb.debian.org/debian forky/main amd64 libltdl7 amd64 2.5.4-4 [416 kB] Get:305 http://deb.debian.org/debian forky/main amd64 libpathplan4 amd64 2.42.4-3 [42.6 kB] Get:306 http://deb.debian.org/debian forky/main amd64 libgvc6 amd64 2.42.4-3 [686 kB] Get:307 http://deb.debian.org/debian forky/main amd64 libgvpr2 amd64 2.42.4-3 [192 kB] Get:308 http://deb.debian.org/debian forky/main amd64 liblab-gamut1 amd64 2.42.4-3 [198 kB] Get:309 http://deb.debian.org/debian forky/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get:310 http://deb.debian.org/debian forky/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get:311 http://deb.debian.org/debian forky/main amd64 graphviz amd64 2.42.4-3 [621 kB] Get:312 http://deb.debian.org/debian forky/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get:313 http://deb.debian.org/debian forky/main amd64 isympy-common all 1.13.3-5 [234 kB] Get:314 http://deb.debian.org/debian forky/main amd64 isympy3 all 1.13.3-5 [6748 B] Get:315 http://deb.debian.org/debian forky/main amd64 javascript-common all 12+nmu1 [4864 B] Get:316 http://deb.debian.org/debian forky/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:317 http://deb.debian.org/debian forky/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:318 http://deb.debian.org/debian forky/main amd64 libalgorithm-diff-xs-perl amd64 0.04-9 [11.1 kB] Get:319 http://deb.debian.org/debian forky/main amd64 libalgorithm-merge-perl all 0.08-5 [11.8 kB] Get:320 http://deb.debian.org/debian forky/main amd64 libarpack2t64 amd64 3.9.1-6 [104 kB] Get:321 http://deb.debian.org/debian forky/main amd64 libarmadillo14 amd64 1:14.2.3+dfsg-1+b1 [102 kB] Get:322 http://deb.debian.org/debian forky/main amd64 libcrypt-urandom-perl amd64 0.54-1 [15.5 kB] Get:323 http://deb.debian.org/debian forky/main amd64 libauthen-sasl-perl all 2.1900-1 [47.9 kB] Get:324 http://deb.debian.org/debian forky/main amd64 libblas-dev amd64 3.12.1-6 [170 kB] Get:325 http://deb.debian.org/debian forky/main amd64 libsnappy1v5 amd64 1.2.2-1 [29.3 kB] Get:326 http://deb.debian.org/debian forky/main amd64 libblosc1 amd64 1.21.5+ds-1+b2 [49.5 kB] Get:327 http://deb.debian.org/debian forky/main amd64 libblosc2-4 amd64 2.17.1+ds-1 [193 kB] Get:328 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get:329 http://deb.debian.org/debian forky/main amd64 libcfitsio10t64 amd64 4.6.2-2 [577 kB] Get:330 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:331 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:332 http://deb.debian.org/debian forky/main amd64 libllvm19 amd64 1:19.1.7-3+b1 [26.0 MB] Get:333 http://deb.debian.org/debian forky/main amd64 libclang-cpp19 amd64 1:19.1.7-3+b1 [13.2 MB] Get:334 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:335 http://deb.debian.org/debian forky/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:336 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get:337 http://deb.debian.org/debian forky/main amd64 libdrm-common all 2.4.124-2 [8288 B] Get:338 http://deb.debian.org/debian forky/main amd64 libdrm2 amd64 2.4.124-2 [39.0 kB] Get:339 http://deb.debian.org/debian forky/main amd64 libdrm-amdgpu1 amd64 2.4.124-2 [22.6 kB] Get:340 http://deb.debian.org/debian forky/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:341 http://deb.debian.org/debian forky/main amd64 libdrm-intel1 amd64 2.4.124-2 [64.1 kB] Get:342 http://deb.debian.org/debian forky/main amd64 libwayland-server0 amd64 1.23.1-3 [34.4 kB] Get:343 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:344 http://deb.debian.org/debian forky/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:345 http://deb.debian.org/debian forky/main amd64 libsensors5 amd64 1:3.6.2-2 [37.5 kB] Get:346 http://deb.debian.org/debian forky/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [247 kB] Get:347 http://deb.debian.org/debian forky/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get:348 http://deb.debian.org/debian forky/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get:349 http://deb.debian.org/debian forky/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get:350 http://deb.debian.org/debian forky/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get:351 http://deb.debian.org/debian forky/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get:352 http://deb.debian.org/debian forky/main amd64 libxshmfence1 amd64 1.3.3-1 [10.9 kB] Get:353 http://deb.debian.org/debian forky/main amd64 mesa-libgallium amd64 25.0.7-2 [9629 kB] Get:354 http://deb.debian.org/debian forky/main amd64 libgbm1 amd64 25.0.7-2 [44.4 kB] Get:355 http://deb.debian.org/debian forky/main amd64 libwayland-client0 amd64 1.23.1-3 [26.8 kB] Get:356 http://deb.debian.org/debian forky/main amd64 libegl-mesa0 amd64 25.0.7-2 [128 kB] Get:357 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:358 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get:359 http://deb.debian.org/debian forky/main amd64 libffi-dev amd64 3.4.8-2 [61.1 kB] Get:360 http://deb.debian.org/debian forky/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:361 http://deb.debian.org/debian forky/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:362 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get:363 http://deb.debian.org/debian forky/main amd64 libfile-desktopentry-perl all 0.22-3 [17.6 kB] Get:364 http://deb.debian.org/debian forky/main amd64 libfile-fcntllock-perl amd64 0.22-4+b4 [34.6 kB] Get:365 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:366 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:367 http://deb.debian.org/debian forky/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:368 http://deb.debian.org/debian forky/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get:369 http://deb.debian.org/debian forky/main amd64 libfile-mimeinfo-perl all 0.35-1 [44.4 kB] Get:370 http://deb.debian.org/debian forky/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:371 http://deb.debian.org/debian forky/main amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1+b1 [53.3 kB] Get:372 http://deb.debian.org/debian forky/main amd64 libfreexl1 amd64 2.0.0-1+b3 [40.0 kB] Get:373 http://deb.debian.org/debian forky/main amd64 libfyba0t64 amd64 4.1.1-11+b1 [113 kB] Get:374 http://deb.debian.org/debian forky/main amd64 libgeos3.13.1 amd64 3.13.1-1 [970 kB] Get:375 http://deb.debian.org/debian forky/main amd64 libgeos-c1t64 amd64 3.13.1-1 [102 kB] Get:376 http://deb.debian.org/debian forky/main amd64 proj-data all 9.6.0-1 [6303 kB] Get:377 http://deb.debian.org/debian forky/main amd64 libproj25 amd64 9.6.0-1 [1453 kB] Get:378 http://deb.debian.org/debian forky/main amd64 libgeotiff5 amd64 1.7.4-1 [68.3 kB] Get:379 http://deb.debian.org/debian forky/main amd64 libgif7 amd64 5.2.2-1+b1 [44.2 kB] Get:380 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:381 http://deb.debian.org/debian forky/main amd64 libhdf4-0-alt amd64 4.3.0-1+b1 [269 kB] Get:382 http://deb.debian.org/debian forky/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:383 http://deb.debian.org/debian forky/main amd64 libjson-c5 amd64 0.18+ds-1 [46.0 kB] Get:384 http://deb.debian.org/debian forky/main amd64 liburiparser1 amd64 0.9.8+dfsg-2 [45.5 kB] Get:385 http://deb.debian.org/debian forky/main amd64 libkmlbase1t64 amd64 1.3.0-12+b2 [50.5 kB] Get:386 http://deb.debian.org/debian forky/main amd64 libkmldom1t64 amd64 1.3.0-12+b2 [158 kB] Get:387 http://deb.debian.org/debian forky/main amd64 libkmlengine1t64 amd64 1.3.0-12+b2 [80.1 kB] Get:388 http://deb.debian.org/debian forky/main amd64 mysql-common all 5.8+1.1.1 [6784 B] Get:389 http://deb.debian.org/debian forky/main amd64 mariadb-common all 1:11.8.2-1 [28.4 kB] Get:390 http://deb.debian.org/debian forky/main amd64 libmariadb3 amd64 1:11.8.2-1 [187 kB] Get:391 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get:392 http://deb.debian.org/debian forky/main amd64 libnetcdf22 amd64 1:4.9.3-1 [517 kB] Get:393 http://deb.debian.org/debian forky/main amd64 libodbc2 amd64 2.3.12-2 [151 kB] Get:394 http://deb.debian.org/debian forky/main amd64 unixodbc-common all 2.3.12-2 [8640 B] Get:395 http://deb.debian.org/debian forky/main amd64 libodbcinst2 amd64 2.3.12-2 [35.1 kB] Get:396 http://deb.debian.org/debian forky/main amd64 libogdi4.1 amd64 4.1.1+ds-5 [217 kB] Get:397 http://deb.debian.org/debian forky/main amd64 libgpgme11t64 amd64 1.24.2-3 [346 kB] Get:398 http://deb.debian.org/debian forky/main amd64 libgpgmepp6t64 amd64 1.24.2-3 [341 kB] Get:399 http://deb.debian.org/debian forky/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get:400 http://deb.debian.org/debian forky/main amd64 libnss3 amd64 2:3.114-1 [1399 kB] Get:401 http://deb.debian.org/debian forky/main amd64 libpoppler147 amd64 25.03.0-5 [2034 kB] Get:402 http://deb.debian.org/debian forky/main amd64 libpq5 amd64 17.5-1 [226 kB] Get:403 http://deb.debian.org/debian forky/main amd64 librttopo1 amd64 1.1.0-4 [179 kB] Get:404 http://deb.debian.org/debian forky/main amd64 libspatialite8t64 amd64 5.1.0-3+b2 [1864 kB] Get:405 http://deb.debian.org/debian forky/main amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3+b2 [898 kB] Get:406 http://deb.debian.org/debian forky/main amd64 libgdal36 amd64 3.10.3+dfsg-1 [9260 kB] Get:407 http://deb.debian.org/debian forky/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get:408 http://deb.debian.org/debian forky/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get:409 http://deb.debian.org/debian forky/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get:410 http://deb.debian.org/debian forky/main amd64 libvulkan1 amd64 1.4.321.0-1 [133 kB] Get:411 http://deb.debian.org/debian forky/main amd64 libgl1-mesa-dri amd64 25.0.7-2 [46.1 kB] Get:412 http://deb.debian.org/debian forky/main amd64 libglx-mesa0 amd64 25.0.7-2 [143 kB] Get:413 http://deb.debian.org/debian forky/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get:414 http://deb.debian.org/debian forky/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get:415 http://deb.debian.org/debian forky/main amd64 libgles2 amd64 1.7.0-1+b2 [17.3 kB] Get:416 http://deb.debian.org/debian forky/main amd64 libglib2.0-data all 2.84.3-1 [1285 kB] Get:417 http://deb.debian.org/debian forky/main amd64 libgpg-error-l10n all 1.55-2 [116 kB] Get:418 http://deb.debian.org/debian forky/main amd64 libgpm2 amd64 1.20.7-11+b2 [14.4 kB] Get:419 http://deb.debian.org/debian forky/main amd64 libgts-bin amd64 0.7.6+darcs121130-5.2+b1 [47.7 kB] Get:420 http://deb.debian.org/debian forky/main amd64 libheif-plugin-aomenc amd64 1.19.8-1 [23.8 kB] Get:421 http://deb.debian.org/debian forky/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get:422 http://deb.debian.org/debian forky/main amd64 libx265-215 amd64 4.1-2 [1237 kB] Get:423 http://deb.debian.org/debian forky/main amd64 libheif-plugin-x265 amd64 1.19.8-1 [22.0 kB] Get:424 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:425 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:426 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:427 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:428 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:429 http://deb.debian.org/debian forky/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:430 http://deb.debian.org/debian forky/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:431 http://deb.debian.org/debian forky/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:432 http://deb.debian.org/debian forky/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:433 http://deb.debian.org/debian forky/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:434 http://deb.debian.org/debian forky/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:435 http://deb.debian.org/debian forky/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get:436 http://deb.debian.org/debian forky/main amd64 libze1 amd64 1.24.1-2 [514 kB] Get:437 http://deb.debian.org/debian forky/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get:438 http://deb.debian.org/debian forky/main amd64 libhwloc15 amd64 2.12.0-4 [164 kB] Get:439 http://deb.debian.org/debian forky/main amd64 libhwloc-plugins amd64 2.12.0-4 [23.5 kB] Get:440 http://deb.debian.org/debian forky/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get:441 http://deb.debian.org/debian forky/main amd64 libio-compress-brotli-perl amd64 0.004001-2+b3 [16.9 kB] Get:442 http://deb.debian.org/debian forky/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:443 http://deb.debian.org/debian forky/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:444 http://deb.debian.org/debian forky/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:445 http://deb.debian.org/debian forky/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB] Get:446 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get:447 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get:448 http://deb.debian.org/debian forky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:449 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get:450 http://deb.debian.org/debian forky/main amd64 liblapack-dev amd64 3.12.1-6 [4991 kB] Get:451 http://deb.debian.org/debian forky/main amd64 libldap-common all 2.6.10+dfsg-1 [35.1 kB] Get:452 http://deb.debian.org/debian forky/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:453 http://deb.debian.org/debian forky/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:454 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:455 http://deb.debian.org/debian forky/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:456 http://deb.debian.org/debian forky/main amd64 libwww-perl all 6.78-1 [183 kB] Get:457 http://deb.debian.org/debian forky/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:458 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-1 [348 kB] Get:459 http://deb.debian.org/debian forky/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:460 http://deb.debian.org/debian forky/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:461 http://deb.debian.org/debian forky/main amd64 libmailtools-perl all 2.22-1 [88.8 kB] Get:462 http://deb.debian.org/debian forky/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB] Get:463 http://deb.debian.org/debian forky/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB] Get:464 http://deb.debian.org/debian forky/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB] Get:465 http://deb.debian.org/debian forky/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:466 http://deb.debian.org/debian forky/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:467 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get:468 http://deb.debian.org/debian forky/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get:469 http://deb.debian.org/debian forky/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get:470 http://deb.debian.org/debian forky/main amd64 libxml-twig-perl all 1:3.52-3 [177 kB] Get:471 http://deb.debian.org/debian forky/main amd64 libnet-dbus-perl amd64 1.2.0-2+b3 [168 kB] Get:472 http://deb.debian.org/debian forky/main amd64 libodbccr2 amd64 2.3.12-2 [18.1 kB] Get:473 http://deb.debian.org/debian forky/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB] Get:474 http://deb.debian.org/debian forky/main amd64 libpcre2-32-0 amd64 10.45-1 [268 kB] Get:475 http://deb.debian.org/debian forky/main amd64 libpcre2-posix3 amd64 10.45-1 [63.5 kB] Get:476 http://deb.debian.org/debian forky/main amd64 libpcre2-dev amd64 10.45-1 [853 kB] Get:477 http://deb.debian.org/debian forky/main amd64 libpfm4 amd64 4.13.0+git106-g3e4031b-1 [372 kB] Get:478 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:479 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:480 http://deb.debian.org/debian forky/main amd64 libpng-dev amd64 1.6.48-1 [366 kB] Get:481 http://deb.debian.org/debian forky/main amd64 libpng-tools amd64 1.6.48-1 [130 kB] Get:482 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.5-2 [2160 kB] Get:483 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.5-2 [5291 kB] Get:484 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Get:485 http://deb.debian.org/debian forky/main amd64 libreadline-dev amd64 8.2-6 [153 kB] Get:486 http://deb.debian.org/debian forky/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-9 [66.7 kB] Get:487 http://deb.debian.org/debian forky/main amd64 libtbbbind-2-5 amd64 2022.1.0-1 [14.0 kB] Get:488 http://deb.debian.org/debian forky/main amd64 libtbbmalloc2 amd64 2022.1.0-1 [50.2 kB] Get:489 http://deb.debian.org/debian forky/main amd64 libtbb12 amd64 2022.1.0-1 [91.7 kB] Get:490 http://deb.debian.org/debian forky/main amd64 libtext-iconv-perl amd64 1.7-8+b4 [14.4 kB] Get:491 http://deb.debian.org/debian forky/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Get:492 http://deb.debian.org/debian forky/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [191 kB] Get:493 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get:494 http://deb.debian.org/debian forky/main amd64 libx11-protocol-perl all 0.56-9 [120 kB] Get:495 http://deb.debian.org/debian forky/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get:496 http://deb.debian.org/debian forky/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB] Get:497 http://deb.debian.org/debian forky/main amd64 libxfixes3 amd64 1:6.0.0-2+b4 [20.2 kB] Get:498 http://deb.debian.org/debian forky/main amd64 libxcursor1 amd64 1:1.2.3-1 [39.7 kB] Get:499 http://deb.debian.org/debian forky/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get:500 http://deb.debian.org/debian forky/main amd64 libxinerama1 amd64 2:1.1.4-3+b4 [16.0 kB] Get:501 http://deb.debian.org/debian forky/main amd64 libxkbfile1 amd64 1:1.1.0-1+b4 [76.5 kB] Get:502 http://deb.debian.org/debian forky/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get:503 http://deb.debian.org/debian forky/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-2.1 [794 kB] Get:504 http://deb.debian.org/debian forky/main amd64 libxmuu1 amd64 2:1.1.3-3+b4 [21.9 kB] Get:505 http://deb.debian.org/debian forky/main amd64 libxrandr2 amd64 2:1.5.4-1+b3 [36.3 kB] Get:506 http://deb.debian.org/debian forky/main amd64 libxtst6 amd64 2:1.2.5-1 [25.8 kB] Get:507 http://deb.debian.org/debian forky/main amd64 libxv1 amd64 2:1.0.11-1.1+b3 [23.4 kB] Get:508 http://deb.debian.org/debian forky/main amd64 libxxf86dga1 amd64 2:1.1.5-1+b3 [20.8 kB] Get:509 http://deb.debian.org/debian forky/main amd64 libz3-dev amd64 4.13.3-1 [107 kB] Get:510 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get:511 http://deb.debian.org/debian forky/main amd64 llvm-19-runtime amd64 1:19.1.7-3+b1 [551 kB] Get:512 http://deb.debian.org/debian forky/main amd64 llvm-19-linker-tools amd64 1:19.1.7-3+b1 [1263 kB] Get:513 http://deb.debian.org/debian forky/main amd64 llvm-19 amd64 1:19.1.7-3+b1 [16.4 MB] Get:514 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get:515 http://deb.debian.org/debian forky/main amd64 llvm-19-tools amd64 1:19.1.7-3+b1 [511 kB] Get:516 http://deb.debian.org/debian forky/main amd64 llvm-19-dev amd64 1:19.1.7-3+b1 [43.1 MB] Get:517 http://deb.debian.org/debian forky/main amd64 luit amd64 2.0.20240910-1 [55.1 kB] Get:518 http://deb.debian.org/debian forky/main amd64 manpages-dev all 6.9.1-1 [2122 kB] Get:519 http://deb.debian.org/debian forky/main amd64 mesa-vulkan-drivers amd64 25.0.7-2 [14.2 MB] Get:520 http://deb.debian.org/debian forky/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get:521 http://deb.debian.org/debian forky/main amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] Get:522 http://deb.debian.org/debian forky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get:523 http://deb.debian.org/debian forky/main amd64 numba-doc all 0.61.2+dfsg-1 [1035 kB] Get:524 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:525 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:526 http://deb.debian.org/debian forky/main amd64 proj-bin amd64 9.6.0-1 [230 kB] Get:527 http://deb.debian.org/debian forky/main amd64 psmisc amd64 23.7-2 [267 kB] Get:528 http://deb.debian.org/debian forky/main amd64 publicsuffix all 20250328.1952-0.1 [296 kB] Get:529 http://deb.debian.org/debian forky/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get:530 http://deb.debian.org/debian forky/main amd64 python-biopython-doc all 1.85+dfsg-4 [18.2 MB] Get:531 http://deb.debian.org/debian forky/main amd64 python-odf-doc all 1.4.2-4 [5344 kB] Get:532 http://deb.debian.org/debian forky/main amd64 python3-legacy-cgi all 2.6.3-1 [16.5 kB] Get:533 http://deb.debian.org/debian forky/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:534 http://deb.debian.org/debian forky/main amd64 python3-odf all 1.4.2-4 [78.4 kB] Get:535 http://deb.debian.org/debian forky/main amd64 python-odf-tools all 1.4.2-4 [28.4 kB] Get:536 http://deb.debian.org/debian forky/main amd64 python-tables-data all 3.10.2-2 [47.3 kB] Get:537 http://deb.debian.org/debian forky/main amd64 python3-babel all 2.17.0-1 [117 kB] Get:538 http://deb.debian.org/debian forky/main amd64 python3-bottleneck amd64 1.4.2+ds1-2+b1 [92.3 kB] Get:539 http://deb.debian.org/debian forky/main amd64 python3-soupsieve all 2.7-1 [39.0 kB] Get:540 http://deb.debian.org/debian forky/main amd64 python3-bs4 all 4.13.4-2 [167 kB] Get:541 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:542 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:543 http://deb.debian.org/debian forky/main amd64 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Get:544 http://deb.debian.org/debian forky/main amd64 python3-cssselect all 1.3.0-1 [21.9 kB] Get:545 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.5-2 [504 kB] Get:546 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Get:547 http://deb.debian.org/debian forky/main amd64 python3-et-xmlfile all 2.0.0-1 [78.2 kB] Get:548 http://deb.debian.org/debian forky/main amd64 python3-gdal amd64 3.10.3+dfsg-1 [959 kB] Get:549 http://deb.debian.org/debian forky/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB] Get:550 http://deb.debian.org/debian forky/main amd64 python3-html5lib all 1.2-2 [92.1 kB] Get:551 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:552 http://deb.debian.org/debian forky/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get:553 http://deb.debian.org/debian forky/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get:554 http://deb.debian.org/debian forky/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get:555 http://deb.debian.org/debian forky/main amd64 python3-llvmlite amd64 0.44.0-1 [231 kB] Get:556 http://deb.debian.org/debian forky/main amd64 python3-numba amd64 0.61.2+dfsg-1 [1773 kB] Get:557 http://deb.debian.org/debian forky/main amd64 python3-numexpr amd64 2.11.0-1 [130 kB] Get:558 http://deb.debian.org/debian forky/main amd64 python3-olefile all 0.47-1 [39.3 kB] Get:559 http://deb.debian.org/debian forky/main amd64 python3-openpyxl all 3.1.5+dfsg-2 [166 kB] Get:560 http://deb.debian.org/debian forky/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get:561 http://deb.debian.org/debian forky/main amd64 python3-pip all 25.2+dfsg-1 [1386 kB] Get:562 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get:563 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.3.0-3 [115 kB] Get:564 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get:565 http://deb.debian.org/debian forky/main amd64 python3-pooch all 1.8.2-1 [58.4 kB] Get:566 http://deb.debian.org/debian forky/main amd64 python3-psutil amd64 7.0.0-2 [220 kB] Get:567 http://deb.debian.org/debian forky/main amd64 python3-pydot all 2.0.0-3 [32.6 kB] Get:568 http://deb.debian.org/debian forky/main amd64 python3-pygraphviz amd64 1.14-1+b2 [77.5 kB] Get:569 http://deb.debian.org/debian forky/main amd64 python3-pytest all 8.3.5-2 [250 kB] Get:570 http://deb.debian.org/debian forky/main amd64 python3-tables-lib amd64 3.10.2-2+b1 [503 kB] Get:571 http://deb.debian.org/debian forky/main amd64 python3-tables all 3.10.2-2 [353 kB] Get:572 http://deb.debian.org/debian forky/main amd64 python3-tqdm all 4.67.1-5 [90.8 kB] Get:573 http://deb.debian.org/debian forky/main amd64 python3-tz all 2025.2-3 [4280 B] Get:574 http://deb.debian.org/debian forky/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get:575 http://deb.debian.org/debian forky/main amd64 r-base-dev all 4.5.1-1 [4360 B] Get:576 http://deb.debian.org/debian forky/main amd64 r-cran-boot all 1.3-31-1 [639 kB] Get:577 http://deb.debian.org/debian forky/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB] Get:578 http://deb.debian.org/debian forky/main amd64 r-cran-class amd64 7.3-23-1 [89.7 kB] Get:579 http://deb.debian.org/debian forky/main amd64 r-cran-cluster amd64 2.1.8.1-1 [585 kB] Get:580 http://deb.debian.org/debian forky/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:581 http://deb.debian.org/debian forky/main amd64 r-cran-foreign amd64 0.8.90-1 [253 kB] Get:582 http://deb.debian.org/debian forky/main amd64 r-cran-kernsmooth amd64 2.23-26-1 [93.0 kB] Get:583 http://deb.debian.org/debian forky/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB] Get:584 http://deb.debian.org/debian forky/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB] Get:585 http://deb.debian.org/debian forky/main amd64 r-cran-nlme amd64 3.1.168-1 [2329 kB] Get:586 http://deb.debian.org/debian forky/main amd64 r-cran-mgcv amd64 1.9-3-1 [3378 kB] Get:587 http://deb.debian.org/debian forky/main amd64 r-cran-nnet amd64 7.3-20-1 [112 kB] Get:588 http://deb.debian.org/debian forky/main amd64 r-cran-survival amd64 3.8-3-1 [8265 kB] Get:589 http://deb.debian.org/debian forky/main amd64 r-cran-rpart amd64 4.1.24-1 [689 kB] Get:590 http://deb.debian.org/debian forky/main amd64 r-cran-spatial amd64 7.3-18-1 [130 kB] Get:591 http://deb.debian.org/debian forky/main amd64 r-doc-html all 4.5.1-1 [603 kB] Get:592 http://deb.debian.org/debian forky/main amd64 r-recommended all 4.5.1-1 [2580 B] Get:593 http://deb.debian.org/debian forky/main amd64 sq amd64 1.3.1-2+b1 [5654 kB] Get:594 http://deb.debian.org/debian forky/main amd64 x11-utils amd64 7.7+7 [182 kB] Get:595 http://deb.debian.org/debian forky/main amd64 x11-xserver-utils amd64 7.7+11 [163 kB] Get:596 http://deb.debian.org/debian forky/main amd64 xdg-user-dirs amd64 0.18-2 [53.2 kB] Get:597 http://deb.debian.org/debian forky/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get:598 http://deb.debian.org/debian forky/main amd64 zutty amd64 0.16.2.20241020+dfsg1-1 [182 kB] Get:599 http://deb.debian.org/debian forky/main amd64 gnupg-utils amd64 2.4.7-21+b3 [194 kB] Preconfiguring packages ... 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Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libmariadb3:amd64 (1:11.8.2-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up unixodbc-common (2.3.12-2) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libsensors5:amd64 (1:3.6.2-2) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libltdl7:amd64 (2.5.4-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (15.2.0-1) ... Setting up libvulkan1:amd64 (1.4.321.0-1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up liblzma-dev:amd64 (5.8.1-1) ... Setting up libubsan1:amd64 (15.2.0-1) ... Setting up libgif7:amd64 (5.2.2-1+b1) ... Setting up libodbc2:amd64 (2.3.12-2) ... Setting up liburiparser1:amd64 (0.9.8+dfsg-2) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up libnuma1:amd64 (2.0.19-1) ... Setting up libpcre2-posix3:amd64 (10.45-1) ... Setting up libfyba0t64:amd64 (4.1.1-11+b1) ... Setting up librttopo1:amd64 (1.1.0-4) ... Setting up libdav1d7:amd64 (1.5.1-1) ... Setting up perl-modules-5.40 (5.40.1-6) ... Setting up sensible-utils (0.0.25) ... Setting up libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.3-1) ... Setting up libxshmfence1:amd64 (1.3.3-1) ... Setting up libhwasan0:amd64 (15.2.0-1) ... Setting up gpgv (2.4.7-21+b3) ... Setting up libcrypt-dev:amd64 (1:4.4.38-1) ... Setting up libtiff6:amd64 (4.7.0-3) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ... Setting up dbus-session-bus-common (1.16.2-2) ... Setting up librav1e0.7:amd64 (0.7.1-9+b2) ... Setting up libasan8:amd64 (15.2.0-1) ... Setting up libassuan9:amd64 (3.0.2-2) ... Setting up procps (2:4.0.4-9) ... Setting up libblosc1:amd64 (1.21.5+ds-1+b2) ... Setting up fonts-liberation (1:2.1.5-3) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up sgml-base (1.31+nmu1) ... Setting up libcdt5:amd64 (2.42.4-3) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libcgraph6:amd64 (2.42.4-3) ... Setting up libicu76:amd64 (76.1-4) ... Setting up libmbedcrypto16:amd64 (3.6.4-2) ... Setting up libxkbfile1:amd64 (1:1.1.0-1+b4) ... Setting up libpaper2:amd64 (2.2.5-0.3+b2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtsan2:amd64 (15.2.0-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up fonts-liberation-sans-narrow (1:1.07.6-4) ... Setting up libbinutils:amd64 (2.45-3) ... Setting up dbus-system-bus-common (1.16.2-2) ... Setting up libisl23:amd64 (0.27-1) ... Setting up libde265-0:amd64 (1.0.16-1) ... Setting up libc-dev-bin (2.41-12) ... Setting up libkmlbase1t64:amd64 (1.3.0-12+b2) ... Setting up libx265-215:amd64 (4.1-2) ... Setting up python-matplotlib-data (3.10.1+dfsg1-4) ... Setting up openssl (3.5.1-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libgpg-error-l10n (1.55-2) ... Setting up libdeflate-dev:amd64 (1.23-2) ... Setting up libdrm-common (2.4.124-2) ... Setting up libyuv0:amd64 (0.0.1904.20250204-1) ... Setting up libxcomposite1:amd64 (1:0.4.6-1) ... Setting up libjson-c5:amd64 (0.18+ds-1) ... Setting up readline-common (8.2-6) ... Setting up publicsuffix (20250328.1952-0.1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up python-tables-data (3.10.2-2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libcc1-0:amd64 (15.2.0-1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b4) ... Setting up dbus-bin (1.16.2-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up liblsan0:amd64 (15.2.0-1) ... Setting up libblas-dev:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libitm1:amd64 (15.2.0-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libodbccr2:amd64 (2.3.12-2) ... Setting up gdal-plugins:amd64 (3.10.3+dfsg-1) ... Setting up libwayland-client0:amd64 (1.23.1-3) ... Setting up libctf0:amd64 (2.45-3) ... Setting up libksba8:amd64 (1.6.7-2+b1) ... Setting up pinentry-curses (1.3.2-3) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.7-3+b1) ... Setting up libwayland-server0:amd64 (1.23.1-3) ... Setting up binutils-gold-x86-64-linux-gnu (2.44-2) ... Setting up libz3-dev:amd64 (4.13.3-1) ... Setting up manpages-dev (6.9.1-1) ... Setting up libx11-xcb1:amd64 (2:1.8.12-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libodbcinst2:amd64 (2.3.12-2) ... Setting up libavif16:amd64 (1.2.1-1.2) ... Setting up liblapack3:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libarpack2t64:amd64 (3.9.1-6) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libpng-tools (1.6.48-1) ... Setting up binutils-gold (2.44-2) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libnss3:amd64 (2:3.114-1) ... Setting up dbus-daemon (1.16.2-2) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up libffi-dev:amd64 (3.4.8-2) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b4) ... Setting up libtbbbind-2-5:amd64 (2022.1.0-1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up libkmldom1t64:amd64 (1.3.0-12+b2) ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up perl (5.40.1-6) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libglib2.0-0t64:amd64 (2.84.3-1) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.45-3) ... Setting up libmbedx509-7:amd64 (3.6.4-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b4) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libxml-xpathengine-perl (0.14-2) ... Setting up dbus (1.16.2-2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libio-compress-brotli-perl (0.004001-2+b3) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up python-odf-doc (1.4.2-4) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b4) ... Setting up libxv1:amd64 (2:1.0.11-1.1+b3) ... Setting up liblapack-dev:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libio-html-perl (1.004-3) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b3) ... Setting up icu-devtools (76.1-4) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-19) ... Setting up ucf (3.0052) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libdpkg-perl (1.22.21) ... Setting up cpp-14 (14.2.0-19) ... Setting up libhdf4-0-alt:amd64 (4.3.0-1+b1) ... Setting up libmbedtls21:amd64 (3.6.4-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libgvpr2:amd64 (2.42.4-3) ... Setting up libdrm2:amd64 (2.4.124-2) ... Setting up libfreexl1:amd64 (2.0.0-1+b3) ... Setting up xauth (1:1.1.2-1.1) ... Setting up python-biopython-doc (1.85+dfsg-4) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.2) ... Setting up gpgconf (2.4.7-21+b3) ... Setting up libc6-dev:amd64 (2.41-12) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ... Setting up libarmadillo14 (1:14.2.3+dfsg-1+b1) ... Setting up llvm-19-linker-tools (1:19.1.7-3+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up numba-doc (0.61.2+dfsg-1) ... Setting up libgcc-14-dev:amd64 (14.2.0-19) ... Setting up llvm-19-runtime (1:19.1.7-3+b1) ... Setting up libstdc++-14-dev:amd64 (14.2.0-19) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libicu-dev:amd64 (76.1-4) ... Setting up liburi-perl (5.30-1) ... Setting up libx11-protocol-perl (0.56-9) ... Setting up gpg (2.4.7-21+b3) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libclang-cpp19 (1:19.1.7-3+b1) ... Setting up gnupg-utils (2.4.7-21+b3) ... Setting up binutils-x86-64-linux-gnu (2.45-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.124-2) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libpython3.13:amd64 (3.13.5-2) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libgfortran-14-dev:amd64 (14.2.0-19) ... Setting up mesa-vulkan-drivers:amd64 (25.0.7-2) ... Setting up libgts-bin (0.7.6+darcs121130-5.2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up fontconfig (2.15.0-2.3) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libncurses-dev:amd64 (6.5+20250216-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libtie-ixhash-perl (1.23-4) ... Setting up gpg-agent (2.4.7-21+b3) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpcre2-dev:amd64 (10.45-1) ... Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up libfont-afm-perl (1.20-4) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up libogdi4.1:amd64 (4.1.1+ds-5) ... Setting up libfile-fcntllock-perl (0.22-4+b4) ... Setting up python3.13 (3.13.5-2) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libio-stringy-perl (2.113-2) ... Setting up libxtst6:amd64 (2:1.2.5-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up libxcursor1:amd64 (1:1.2.3-1) ... Setting up gpgsm (2.4.7-21+b3) ... Setting up libpango-1.0-0:amd64 (1.56.3-1) ... Setting up libdrm-intel1:amd64 (2.4.124-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libcrypt-urandom-perl (0.54-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up libpq5:amd64 (17.5-1) ... Setting up libxxf86dga1:amd64 (2:1.1.5-1+b3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up python3 (3.13.5-1) ... Setting up libtbb12:amd64 (2022.1.0-1) ... Setting up binutils (2.45-3) ... Setting up libkmlengine1t64:amd64 (1.3.0-12+b2) ... Setting up libreadline-dev:amd64 (8.2-6) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:amd64 (2.12.0-4) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-webencodings (0.5.1-5) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.5-2) ... Setting up python3-platformdirs (4.3.7-1) ... Setting up python3-psutil (7.0.0-2) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up dpkg-dev (1.22.21) ... Setting up python3-fs (2.4.16-7) ... Setting up ncbi-blast+ (2.16.0+ds-7) ... Setting up dirmngr (2.4.7-21+b3) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-idna (3.10-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.14.1-1) ... Setting up python3-cpuinfo (9.0.0+git20221119-3) ... Setting up python3-html5lib (1.2-2) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up libfile-desktopentry-perl (0.22-3) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-legacy-cgi (2.6.3-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up python3-lxml:amd64 (5.4.0-1) ... Setting up cpp (4:14.2.0-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up python3-et-xmlfile (2.0.0-1) ... Setting up gnupg (2.4.7-21) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-2) ... Setting up libgpgme11t64:amd64 (1.24.2-3) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-19) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-cssselect (1.3.0-1) ... Setting up libalgorithm-diff-xs-perl (0.04-9) ... Setting up python3-soupsieve (2.7-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ... Setting up libalgorithm-merge-perl (0.08-5) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-pyfaidx (0.8.1.3-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-5) ... Setting up libfile-mimeinfo-perl (0.35-1) ... Setting up python3-attr (25.3.0-1) ... Setting up libgpgmepp6t64:amd64 (1.24.2-3) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up mesa-libgallium:amd64 (25.0.7-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up python3-scipy (1.15.3-1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gpg-wks-client (2.4.7-21+b3) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.14.1-2) ... Setting up python3-joblib (1.4.2-4) ... Setting up libgbm1:amd64 (25.0.7-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.4.0+dfsg-2) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b4) ... Setting up python3-olefile (0.47-1) ... Setting up libauthen-sasl-perl (2.1900-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Setting up python3-tqdm (4.67.1-5) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libgl1-mesa-dri:amd64 (25.0.7-2) ... Setting up libpng-dev:amd64 (1.6.48-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-4) ... Setting up isympy-common (1.13.3-5) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-2) ... Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-8) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up python3-pytz (2025.2-3) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libxerces-c3.2t64:amd64 (3.2.4+debian-1.3+b2) ... Setting up x11-xserver-utils (7.7+11) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-tz (2025.2-3) ... Setting up python3-bs4 (4.13.4-2) ... Setting up gcc-14 (14.2.0-19) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libegl-mesa0:amd64 (25.0.7-2) ... Setting up libcfitsio10t64:amd64 (4.6.2-2) ... Setting up python3-pandas (2.2.3+dfsg-9) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up python3-pil.imagetk:amd64 (11.1.0-5+b1) ... Setting up libmailtools-perl (2.22-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-openpyxl (3.1.5+dfsg-2) ... Setting up isympy3 (1.13.3-5) ... Setting up libpython3.13-dev:amd64 (3.13.5-2) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up r-base-core (4.5.1-1) ... Creating config file /etc/R/Renviron with new version Setting up python3-bottleneck (1.4.2+ds1-2+b1) ... Setting up python3-sklearn (1.4.2+dfsg-8) ... Setting up python3-numexpr (2.11.0-1) ... Setting up python3-pip (25.2+dfsg-1) ... Setting up r-cran-lattice (0.22-7-1) ... Setting up r-cran-nlme (3.1.168-1) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-reportlab (4.4.2-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up libhttp-daemon-perl (6.16-1) ... Setting up r-cran-cluster (2.1.8.1-1) ... Setting up libegl1:amd64 (1.7.0-1+b2) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up r-cran-nnet (7.3-20-1) ... Setting up llvm-19 (1:19.1.7-3+b1) ... Setting up g++-14 (14.2.0-19) ... Setting up gfortran-14 (14.2.0-19) ... Setting up llvm-19-tools (1:19.1.7-3+b1) ... Setting up python3-odf (1.4.2-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up r-cran-boot (1.3-31-1) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up libglx-mesa0:amd64 (25.0.7-2) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up libpython3-dev:amd64 (3.13.5-1) ... Setting up libpoppler147:amd64 (25.03.0-5) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up libproj25:amd64 (9.6.0-1) ... Setting up python3.13-dev (3.13.5-2) ... Setting up python3-tables-lib (3.10.2-2+b1) ... Setting up r-cran-spatial (7.3-18-1) ... Setting up libnetcdf22:amd64 (1:4.9.3-1) ... Setting up python-odf-tools (1.4.2-4) ... Setting up r-cran-mass (7.3-65-1) ... Setting up proj-bin (9.6.0-1) ... Setting up python3-tables (3.10.2-2) ... Setting up r-cran-foreign (0.8.90-1) ... Setting up python3-networkx (3.2.1-5) ... Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gcc (4:14.2.0-1) ... Setting up libgeotiff5:amd64 (1.7.4-1) ... Setting up python3-llvmlite (0.44.0-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up python3-pooch (1.8.2-1) ... Setting up python3-dev (3.13.5-1) ... Setting up llvm-19-dev (1:19.1.7-3+b1) ... Setting up r-cran-matrix (1.7-3-1) ... Setting up r-cran-kernsmooth (2.23-26-1) ... Setting up zutty (0.16.2.20241020+dfsg1-1) ... update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up r-cran-mgcv (1.9-3-1) ... Setting up g++ (4:14.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up r-bioc-dnacopy (1.80.0-2) ... Setting up x11-utils (7.7+7) ... Setting up build-essential (12.12) ... Setting up libspatialite8t64:amd64 (5.1.0-3+b2) ... Setting up r-cran-class (7.3-23-1) ... Setting up python3-pomegranate (0.15.0-1+b1) ... Setting up r-cran-survival (3.8-3-1) ... Setting up python3-numba (0.61.2+dfsg-1) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up r-base-dev (4.5.1-1) ... Setting up r-cran-rpart (4.1.24-1) ... Setting up r-recommended (4.5.1-1) ... Setting up python3-fonttools (4.57.0-1) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up libheif-plugin-dav1d:amd64 (1.19.8-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-4) ... Setting up libwww-perl (6.78-1) ... Setting up libheif1:amd64 (1.19.8-1) ... Setting up libgd3:amd64 (2.3.3-13) ... Setting up libgvc6 (2.42.4-3) ... Setting up libgdal36:amd64 (3.10.3+dfsg-1) ... Setting up python3-gdal (3.10.3+dfsg-1) ... Setting up graphviz (2.42.4-3) ... Setting up libheif-plugin-libde265:amd64 (1.19.8-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libheif-plugin-x265:amd64 (1.19.8-1) ... Setting up libheif-plugin-aomenc:amd64 (1.19.8-1) ... Setting up python3-pydot (2.0.0-3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libnet-dbus-perl (1.2.0-2+b3) ... Setting up python3-pygraphviz (1.14-1+b2) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-4) ... Setting up cnvkit (0.9.12-1) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', '-y', 'install', 'cnvkit=0.9.12-1'] 2m29.4s INFO: Running scripts post_install 2m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_install_exceptions'] 2m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_install_exceptions'] 2m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'systemd-tmpfiles', '--cat-config'] 2m29.4s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 2m29.4s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'systemd-tmpfiles', '--cat-config'] 2m29.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 2m32.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 2m36.8s ERROR: WARN: Broken symlinks: /usr/share/doc/liblzma-dev/THANKS -> ../liblzma5/THANKS (liblzma-dev:amd64) 2m39.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', '-ac', '--ignore-obsolete'] 2m47.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', '-ac', '--ignore-obsolete'] 2m47.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m47.7s DUMP: 0.15.9~deb12u1 2m47.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m47.7s INFO: Running adequate version 0.15.9~deb12u1 now. 2m47.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'cnvkit'] 2m47.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'cnvkit'] 2m47.8s INFO: Running scripts pre_remove 2m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_exceptions'] 3m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/pre_remove_exceptions'] 3m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m7.9s DUMP: install ok installed adduser adduser 3.152 install ok installed apt apt 3.1.4 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed binfmt-support binfmt-support 2.2.2-7 install ok installed binutils binutils 2.45-3 install ok installed binutils-common:amd64 binutils-common 2.45-3 install ok installed binutils-gold binutils-gold 2.44-2 install ok installed binutils-gold-x86-64-linux-gnu binutils-gold-x86-64-linux-gnu 2.44-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.45-3 install ok installed blt blt 2.5.3+dfsg-8 install ok installed bsdutils bsdutils 1:2.41.1-1 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6 install ok installed bzip2-doc bzip2-doc 1.0.8-6 install ok installed ca-certificates ca-certificates 20250419 install ok installed cnvkit cnvkit 0.9.12-1 install ok installed coreutils coreutils 9.7-3 install ok installed cpp cpp 4:14.2.0-1 install ok installed cpp-14 cpp-14 14.2.0-19 install ok installed cpp-14-x86-64-linux-gnu cpp-14-x86-64-linux-gnu 14.2.0-19 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:14.2.0-1 install ok installed cython3 cython3 3.0.11+dfsg-2+b1 install ok installed dash dash 0.5.12-12 install ok installed dbus dbus 1.16.2-2 install ok installed dbus-bin dbus-bin 1.16.2-2 install ok installed dbus-daemon dbus-daemon 1.16.2-2 install ok installed dbus-session-bus-common dbus-session-bus-common 1.16.2-2 install ok installed dbus-system-bus-common dbus-system-bus-common 1.16.2-2 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dirmngr dirmngr 2.4.7-21+b3 install ok installed dpkg dpkg 1.22.21 install ok installed dpkg-dev dpkg-dev 1.22.21 install ok installed fakeroot fakeroot 1.37.1.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-2.3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.3 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-liberation fonts-liberation 1:2.1.5-3 install ok installed fonts-liberation-sans-narrow fonts-liberation-sans-narrow 1:1.07.6-4 install ok installed fonts-lyx fonts-lyx 2.4.3-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed g++ g++ 4:14.2.0-1 install ok installed g++-14 g++-14 14.2.0-19 install ok installed g++-14-x86-64-linux-gnu g++-14-x86-64-linux-gnu 14.2.0-19 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:14.2.0-1 install ok installed gcc gcc 4:14.2.0-1 install ok installed gcc-14 gcc-14 14.2.0-19 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu 14.2.0-19 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-1 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:14.2.0-1 install ok installed gdal-data gdal-data 3.10.3+dfsg-1 install ok installed gdal-plugins:amd64 gdal-plugins 3.10.3+dfsg-1 install ok installed gfortran gfortran 4:14.2.0-1 install ok installed gfortran-14 gfortran-14 14.2.0-19 install ok installed gfortran-14-x86-64-linux-gnu gfortran-14-x86-64-linux-gnu 14.2.0-19 install ok installed gfortran-x86-64-linux-gnu gfortran-x86-64-linux-gnu 4:14.2.0-1 install ok installed gnupg gnupg 2.4.7-21 install ok installed gnupg-l10n gnupg-l10n 2.4.7-21 install ok installed gnupg-utils gnupg-utils 2.4.7-21+b3 install ok installed gpg gpg 2.4.7-21+b3 install ok installed gpg-agent gpg-agent 2.4.7-21+b3 install ok installed gpg-wks-client gpg-wks-client 2.4.7-21+b3 install ok installed gpgconf gpgconf 2.4.7-21+b3 install ok installed gpgsm gpgsm 2.4.7-21+b3 install ok installed gpgv gpgv 2.4.7-21+b3 install ok installed graphviz graphviz 2.42.4-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed icu-devtools icu-devtools 76.1-4 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed isympy-common isympy-common 1.13.3-5 install ok installed isympy3 isympy3 1.13.3-5 install ok installed javascript-common javascript-common 12+nmu1 install ok installed krb5-locales krb5-locales 1.21.3-5 install ok installed libabsl20240722:amd64 libabsl20240722 20240722.0-4 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-9 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-5 install ok installed libann0 libann0 1.1.2+doc-9+b1 install ok installed libaom3:amd64 libaom3 3.12.1-1 install ok installed libapparmor1:amd64 libapparmor1 4.1.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.4 install ok installed libarmadillo14 libarmadillo14 1:14.2.3+dfsg-1+b1 install ok installed libarpack2t64:amd64 libarpack2t64 3.9.1-6 install ok installed libasan8:amd64 libasan8 15.2.0-1 install ok installed libassuan9:amd64 libassuan9 3.0.2-2 install ok installed libatomic1:amd64 libatomic1 15.2.0-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.5-1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1900-1 install ok installed libavif16:amd64 libavif16 1.2.1-1.2 install ok installed libbinutils:amd64 libbinutils 2.45-3 install ok installed libblas-dev:amd64 libblas-dev 3.12.1-6 install ok installed libblas3:amd64 libblas3 3.12.1-6 install ok installed libblkid1:amd64 libblkid1 2.41.1-1 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-1+b2 install ok installed libblosc2-4:amd64 libblosc2-4 2.17.1+ds-1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc-dev-bin libc-dev-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libc6-dev:amd64 libc6-dev 2.41-12 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcc1-0:amd64 libcc1-0 15.2.0-1 install ok installed libcdt5:amd64 libcdt5 2.42.4-3 install ok installed libcfitsio10t64:amd64 libcfitsio10t64 4.6.2-2 install ok installed libcgraph6:amd64 libcgraph6 2.42.4-3 install ok installed libclang-cpp19 libclang-cpp19 1:19.1.7-3+b1 install ok installed libclone-perl:amd64 libclone-perl 0.47-1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1 install ok installed libcrypt-urandom-perl libcrypt-urandom-perl 0.54-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.45-3 install ok installed libctf0:amd64 libctf0 2.45-3 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.14.1-2 install ok installed libcurl4t64:amd64 libcurl4t64 8.14.1-2 install ok installed libdata-dump-perl libdata-dump-perl 1.25-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-4 install ok installed libdav1d7:amd64 libdav1d7 1.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.16.2-2 install ok installed libde265-0:amd64 libde265-0 1.0.16-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdeflate-dev:amd64 libdeflate-dev 1.23-2 install ok installed libdeflate0:amd64 libdeflate0 1.23-2 install ok installed libdpkg-perl libdpkg-perl 1.22.21 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.124-2 install ok installed libdrm-common libdrm-common 2.4.124-2 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.124-2 install ok installed libdrm2:amd64 libdrm2 2.4.124-2 install ok installed libedit2:amd64 libedit2 3.1-20250104-1 install ok installed libegl-mesa0:amd64 libegl-mesa0 25.0.7-2 install ok installed libegl1:amd64 libegl1 1.7.0-1+b2 install ok installed libelf1t64:amd64 libelf1t64 0.192-4 install ok installed libencode-locale-perl libencode-locale-perl 1.05-3 install ok installed libexpat1:amd64 libexpat1 2.7.1-2 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.7.1-2 install ok installed libfakeroot:amd64 libfakeroot 1.37.1.2-1 install ok installed 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ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.3-1 install ok installed libglib2.0-data libglib2.0-data 2.84.3-1 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-1+b2 install ok installed libglx-mesa0:amd64 libglx-mesa0 25.0.7-2 install ok installed libglx0:amd64 libglx0 1.7.0-1+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-3 install ok installed libgomp1:amd64 libgomp1 15.2.0-1 install ok installed libgpg-error-l10n libgpg-error-l10n 1.55-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.55-2 install ok installed libgpgme11t64:amd64 libgpgme11t64 1.24.2-3 install ok installed libgpgmepp6t64:amd64 libgpgmepp6t64 1.24.2-3 install ok installed libgpm2:amd64 libgpm2 1.20.7-11+b2 install ok installed libgprofng0:amd64 libgprofng0 2.45-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libgts-0.7-5t64:amd64 libgts-0.7-5t64 0.7.6+darcs121130-5.2+b1 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-5.2+b1 install ok installed libgvc6 libgvc6 2.42.4-3 install ok installed libgvpr2:amd64 libgvpr2 2.42.4-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1 install ok installed libhdf4-0-alt:amd64 libhdf4-0-alt 4.3.0-1+b1 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3 install ok installed libheif-plugin-aomenc:amd64 libheif-plugin-aomenc 1.19.8-1 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.19.8-1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.19.8-1 install ok installed libheif-plugin-x265:amd64 libheif-plugin-x265 1.19.8-1 install ok installed libheif1:amd64 libheif1 1.19.8-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhtml-form-perl libhtml-form-perl 6.12-1 install ok installed libhtml-format-perl libhtml-format-perl 2.16-2 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.83-1+b2 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.24-1 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-3 install ok installed libhts3t64:amd64 libhts3t64 1.21+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.1-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.11-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.16-1 install ok installed libhttp-date-perl libhttp-date-perl 6.06-1 install ok installed libhttp-message-perl libhttp-message-perl 7.00-2 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-2 install ok installed libhwasan0:amd64 libhwasan0 15.2.0-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.12.0-4 install ok installed libhwloc15:amd64 libhwloc15 2.12.0-4 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu-dev:amd64 libicu-dev 76.1-4 install ok installed libicu76:amd64 libicu76 76.1-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libio-compress-brotli-perl libio-compress-brotli-perl 0.004001-2+b3 install ok installed libio-html-perl libio-html-perl 1.004-3 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.089-1 install ok installed libio-stringy-perl libio-stringy-perl 2.113-2 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.30-2 install ok installed libisl23:amd64 libisl23 0.27-1 install ok installed libitm1:amd64 libitm1 15.2.0-1 install ok installed libjansson4:amd64 libjansson4 2.14-2+b3 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg-dev:amd64 libjpeg-dev 1:2.1.5-4 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:2.1.5-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 8.1.3-5 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libjson-c5:amd64 libjson-c5 0.18+ds-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkmlbase1t64:amd64 libkmlbase1t64 1.3.0-12+b2 install ok installed libkmldom1t64:amd64 libkmldom1t64 1.3.0-12+b2 install ok installed libkmlengine1t64:amd64 libkmlengine1t64 1.3.0-12+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed libksba8:amd64 libksba8 1.6.7-2+b1 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.4-3 install ok installed liblapack-dev:amd64 liblapack-dev 3.12.1-6 install ok installed liblapack3:amd64 liblapack3 3.12.1-6 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed libldap-common libldap-common 2.6.10+dfsg-1 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed libllvm19:amd64 libllvm19 1:19.1.7-3+b1 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b2 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-7+b1 install ok installed liblsan0:amd64 liblsan0 15.2.0-1 install ok installed libltdl7:amd64 libltdl7 2.5.4-4 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-2 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.14-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma-dev:amd64 liblzma-dev 5.8.1-1 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-3+b1 install ok installed libmailtools-perl libmailtools-perl 2.22-1 install ok installed libmariadb3:amd64 libmariadb3 1:11.8.2-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.4-2 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.4-2 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.4-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libminizip1t64:amd64 libminizip1t64 1:1.3.dfsg+really1.3.1-1+b1 install ok installed libmount1:amd64 libmount1 2.41.1-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-1+b3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-1 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.2.1+dfsg-2 install ok installed libncurses-dev:amd64 libncurses-dev 6.5+20250216-2 install ok installed libncurses6:amd64 libncurses6 6.5+20250216-2 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnet-dbus-perl libnet-dbus-perl 1.2.0-2+b3 install ok installed libnet-http-perl libnet-http-perl 6.23-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-2 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.94-3 install ok installed libnetcdf22:amd64 libnetcdf22 1:4.9.3-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1.1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.11.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.11.0-1 install ok installed libnpth0t64:amd64 libnpth0t64 1.8-3 install ok installed libnspr4:amd64 libnspr4 2:4.36-1 install ok installed libnss3:amd64 libnss3 2:3.114-1 install ok installed libnuma1:amd64 libnuma1 2.0.19-1 install ok installed libodbc2:amd64 libodbc2 2.3.12-2 install ok installed libodbccr2:amd64 libodbccr2 2.3.12-2 install ok installed libodbcinst2:amd64 libodbcinst2 2.3.12-2 install ok installed libogdi4.1:amd64 libogdi4.1 4.1.1+ds-5 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.3-2.1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.3-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.3-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.3-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b2 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b2 install ok installed libpathplan4:amd64 libpathplan4 2.42.4-3 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b3 install ok installed libpcre2-16-0:amd64 libpcre2-16-0 10.45-1 install ok installed libpcre2-32-0:amd64 libpcre2-32-0 10.45-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpcre2-dev:amd64 libpcre2-dev 10.45-1 install ok installed libpcre2-posix3:amd64 libpcre2-posix3 10.45-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-6 install ok installed libpfm4:amd64 libpfm4 4.13.0+git106-g3e4031b-1 install ok installed libpipeline1:amd64 libpipeline1 1.5.8-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpkgconf3:amd64 libpkgconf3 1.8.1-4 install ok installed libpng-dev:amd64 libpng-dev 1.6.48-1 install ok installed libpng-tools libpng-tools 1.6.48-1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.48-1 install ok installed libpoppler147:amd64 libpoppler147 25.03.0-5 install ok installed libpq5:amd64 libpq5 17.5-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libproj25:amd64 libproj25 9.6.0-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.13.5-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.5-1 install ok installed libpython3.13:amd64 libpython3.13 3.13.5-2 install ok installed libpython3.13-dev:amd64 libpython3.13-dev 3.13.5-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.5-2 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.5-2 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b2 install ok installed libquadmath0:amd64 libquadmath0 15.2.0-1 install ok installed libraqm0:amd64 libraqm0 0.10.3-1 install ok installed librav1e0.7:amd64 librav1e0.7 0.7.1-9+b2 install ok installed libreadline-dev:amd64 libreadline-dev 8.2-6 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed librttopo1:amd64 librttopo1 1.1.0-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsensors-config libsensors-config 1:3.6.2-2 install ok installed libsensors5:amd64 libsensors5 1:3.6.2-2 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsframe2:amd64 libsframe2 2.45-3 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsm6:amd64 libsm6 2:1.2.6-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-1 install ok installed libspatialite8t64:amd64 libspatialite8t64 5.1.0-3+b2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-19 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-1 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtbb12:amd64 libtbb12 2022.1.0-1 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2022.1.0-1 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2022.1.0-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-iconv-perl:amd64 libtext-iconv-perl 1.7-8+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-4 install ok installed libtiff6:amd64 libtiff6 4.7.0-3 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.6+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.32-1 install ok installed libtsan2:amd64 libtsan2 15.2.0-1 install ok installed libubsan1:amd64 libubsan1 15.2.0-1 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed liburi-perl liburi-perl 5.30-1 install ok installed liburiparser1:amd64 liburiparser1 0.9.8+dfsg-2 install ok installed libuuid1:amd64 libuuid1 2.41.1-1 install ok installed libuv1t64:amd64 libuv1t64 1.50.0-2 install ok installed libvulkan1:amd64 libvulkan1 1.4.321.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.23.1-3 install ok installed libwayland-server0:amd64 libwayland-server0 1.23.1-3 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1 install ok installed libwww-perl libwww-perl 6.78-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-9 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.12-1 install ok installed libx265-215:amd64 libx265-215 4.1-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.16-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.17.0-2+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.17.0-2+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.17.0-2+b1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.17.0-2+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.17.0-2+b1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.6-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.3-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxerces-c3.2t64:amd64 libxerces-c3.2t64 3.2.4+debian-1.3+b2 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2+b4 install ok installed libxft2:amd64 libxft2 2.3.6-1+b4 install ok installed libxi6:amd64 libxi6 2:1.8.2-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3+b4 install ok installed libxkbfile1:amd64 libxkbfile1 1:1.1.0-1+b4 install ok installed libxml-parser-perl libxml-parser-perl 2.47-1+b3 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-3 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-2 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-2.1 install ok installed libxml2-dev:amd64 libxml2-dev 2.12.7+dfsg+really2.9.14-2.1 install ok installed libxmu6:amd64 libxmu6 2:1.1.3-3+b4 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.3-3+b4 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b2 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1+b3 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.4-1+b3 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3.3-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2 install ok installed libxtst6:amd64 libxtst6 2:1.2.5-1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1.1+b3 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.5-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libyuv0:amd64 libyuv0 0.0.1904.20250204-1 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libz3-dev:amd64 libz3-dev 4.13.3-1 install ok installed libze1:amd64 libze1 1.24.1-2 install ok installed libzopfli1 libzopfli1 1.0.3-3 install ok installed libzstd-dev:amd64 libzstd-dev 1.5.7+dfsg-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.12.38-1 install ok installed linux-sysctl-defaults linux-sysctl-defaults 4.14 install ok installed llvm-19 llvm-19 1:19.1.7-3+b1 install ok installed llvm-19-dev llvm-19-dev 1:19.1.7-3+b1 install ok installed llvm-19-linker-tools llvm-19-linker-tools 1:19.1.7-3+b1 install ok installed llvm-19-runtime llvm-19-runtime 1:19.1.7-3+b1 install ok installed llvm-19-tools llvm-19-tools 1:19.1.7-3+b1 install ok installed login login 1:4.16.0-2+really2.41.1-1 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed luit luit 2.0.20240910-1 install ok installed make make 4.4.1-2 install ok installed manpages manpages 6.9.1-1 install ok installed manpages-dev manpages-dev 6.9.1-1 install ok installed mariadb-common mariadb-common 1:11.8.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mesa-libgallium:amd64 mesa-libgallium 25.0.7-2 install ok installed mesa-vulkan-drivers:amd64 mesa-vulkan-drivers 25.0.7-2 install ok installed mount mount 2.41.1-1 install ok installed mysql-common mysql-common 5.8+1.1.1 install ok installed ncbi-blast+ ncbi-blast+ 2.16.0+ds-7 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-6 install ok installed ncbi-vdb-data ncbi-vdb-data 3.2.1+dfsg-2 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed numba-doc numba-doc 0.61.2+dfsg-1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.3-1 install ok installed openssl openssl 3.5.1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed patch patch 2.8-2 install ok installed perl perl 5.40.1-6 install ok installed perl-base perl-base 5.40.1-6 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-6 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b2 install ok installed pinentry-curses pinentry-curses 1.3.2-3 install ok installed pkgconf:amd64 pkgconf 1.8.1-4 install ok installed pkgconf-bin pkgconf-bin 1.8.1-4 install ok installed poppler-data poppler-data 0.4.12-1 install ok installed procps procps 2:4.0.4-9 install ok installed proj-bin proj-bin 9.6.0-1 install ok installed proj-data proj-data 9.6.0-1 install ok installed psmisc psmisc 23.7-2 install ok installed publicsuffix publicsuffix 20250328.1952-0.1 install ok installed python-babel-localedata python-babel-localedata 2.17.0-1 install ok installed python-biopython-doc python-biopython-doc 1.85+dfsg-4 install ok installed python-matplotlib-data python-matplotlib-data 3.10.1+dfsg1-4 install ok installed python-odf-doc python-odf-doc 1.4.2-4 install ok installed python-odf-tools python-odf-tools 1.4.2-4 install ok installed python-tables-data python-tables-data 3.10.2-2 install ok installed python3 python3 3.13.5-1 install ok installed python3-attr python3-attr 25.3.0-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-babel python3-babel 2.17.0-1 install ok installed python3-biopython python3-biopython 1.85+dfsg-4 install ok installed python3-bottleneck python3-bottleneck 1.4.2+ds1-2+b1 install ok installed python3-brotli python3-brotli 1.1.0-2+b7 install ok installed python3-bs4 python3-bs4 4.13.4-2 install ok installed python3-cairo python3-cairo 1.27.0-2 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.2-1 install ok installed python3-contourpy python3-contourpy 1.3.1-2 install ok installed python3-cpuinfo python3-cpuinfo 9.0.0+git20221119-3 install ok installed python3-cssselect python3-cssselect 1.3.0-1 install ok installed python3-cycler python3-cycler 0.12.1-2 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-decorator python3-decorator 5.2.1-2 install ok installed python3-defusedxml python3-defusedxml 0.7.1-3 install ok installed python3-dev python3-dev 3.13.5-1 install ok installed python3-et-xmlfile python3-et-xmlfile 2.0.0-1 install ok installed python3-fonttools python3-fonttools 4.57.0-1 install ok installed python3-freetype python3-freetype 2.5.1-2 install ok installed python3-fs python3-fs 2.4.16-7 install ok installed python3-gdal python3-gdal 3.10.3+dfsg-1 install ok installed python3-html5lib python3-html5lib 1.2-2 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-iniconfig python3-iniconfig 1.1.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jinja2 python3-jinja2 3.1.6-1 install ok installed python3-joblib python3-joblib 1.4.2-4 install ok installed python3-kiwisolver python3-kiwisolver 1.4.7-3+b1 install ok installed python3-legacy-cgi python3-legacy-cgi 2.6.3-1 install ok installed python3-llvmlite python3-llvmlite 0.44.0-1 install ok installed python3-lxml:amd64 python3-lxml 5.4.0-1 install ok installed python3-lz4 python3-lz4 4.4.0+dfsg-2 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.10.1+dfsg1-4 install ok installed python3-minimal python3-minimal 3.13.5-1 install ok installed python3-more-itertools python3-more-itertools 10.7.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numba python3-numba 0.61.2+dfsg-1 install ok installed python3-numexpr python3-numexpr 2.11.0-1 install ok installed python3-numpy python3-numpy 1:2.2.4+ds-1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.4+ds-1 install ok installed python3-odf python3-odf 1.4.2-4 install ok installed python3-olefile python3-olefile 0.47-1 install ok installed python3-openpyxl python3-openpyxl 3.1.5+dfsg-2 install ok installed python3-packaging python3-packaging 25.0-1 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-9 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-9 install ok installed python3-pil:amd64 python3-pil 11.1.0-5+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 11.1.0-5+b1 install ok installed python3-pip python3-pip 25.2+dfsg-1 install ok installed python3-pkg-resources python3-pkg-resources 78.1.1-0.1 install ok installed python3-platformdirs python3-platformdirs 4.3.7-1 install ok installed python3-pluggy python3-pluggy 1.6.0-1 install ok installed python3-pomegranate python3-pomegranate 0.15.0-1+b1 install ok installed python3-pooch python3-pooch 1.8.2-1 install ok installed python3-psutil python3-psutil 7.0.0-2 install ok installed python3-pydot python3-pydot 2.0.0-3 install ok installed python3-pyfaidx python3-pyfaidx 0.8.1.3-2 install ok installed python3-pygments python3-pygments 2.18.0+dfsg-2 install ok installed python3-pygraphviz python3-pygraphviz 1.14-1+b2 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pysam python3-pysam 0.23.0+ds-1+b1 install ok installed python3-pytest python3-pytest 8.3.5-2 install ok installed python3-pytz python3-pytz 2025.2-3 install ok installed python3-reportlab python3-reportlab 4.4.2-1 install ok installed python3-requests python3-requests 2.32.3+dfsg-5 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-scipy python3-scipy 1.15.3-1 install ok installed python3-sklearn python3-sklearn 1.4.2+dfsg-8 install ok installed python3-sklearn-lib:amd64 python3-sklearn-lib 1.4.2+dfsg-8 install ok installed python3-soupsieve python3-soupsieve 2.7-1 install ok installed python3-sympy python3-sympy 1.13.3-5 install ok installed python3-tables python3-tables 3.10.2-2 install ok installed python3-tables-lib python3-tables-lib 3.10.2-2+b1 install ok installed python3-threadpoolctl python3-threadpoolctl 3.1.0-1 install ok installed python3-tk:amd64 python3-tk 3.13.5-1 install ok installed python3-tqdm python3-tqdm 4.67.1-5 install ok installed python3-typeguard python3-typeguard 4.4.2-1 install ok installed python3-typing-extensions python3-typing-extensions 4.14.1-1 install ok installed python3-tz python3-tz 2025.2-3 install ok installed python3-ufolib2 python3-ufolib2 0.17.1+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b4 install ok installed python3-urllib3 python3-urllib3 2.3.0-3 install ok installed python3-webencodings python3-webencodings 0.5.1-5 install ok installed python3-wheel python3-wheel 0.46.1-2 install ok installed python3-yaml python3-yaml 6.0.2-1+b2 install ok installed python3-zopfli python3-zopfli 0.2.3.post1-1+b1 install ok installed python3.13 python3.13 3.13.5-2 install ok installed python3.13-dev python3.13-dev 3.13.5-2 install ok installed python3.13-minimal python3.13-minimal 3.13.5-2 install ok installed python3.13-tk python3.13-tk 3.13.5-2 install ok installed r-base-core r-base-core 4.5.1-1 install ok installed r-base-dev r-base-dev 4.5.1-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-2 install ok installed r-bioc-dnacopy r-bioc-dnacopy 1.80.0-2 install ok installed r-cran-boot r-cran-boot 1.3-31-1 install ok installed r-cran-class r-cran-class 7.3-23-1 install ok installed r-cran-cluster r-cran-cluster 2.1.8.1-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-foreign r-cran-foreign 0.8.90-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-26-1 install ok installed r-cran-lattice r-cran-lattice 0.22-7-1 install ok installed r-cran-mass r-cran-mass 7.3-65-1 install ok installed r-cran-matrix r-cran-matrix 1.7-3-1 install ok installed r-cran-mgcv r-cran-mgcv 1.9-3-1 install ok installed r-cran-nlme r-cran-nlme 3.1.168-1 install ok installed r-cran-nnet r-cran-nnet 7.3-20-1 install ok installed r-cran-rpart r-cran-rpart 4.1.24-1 install ok installed r-cran-spatial r-cran-spatial 7.3-18-1 install ok installed r-cran-survival r-cran-survival 3.8-3-1 install ok installed r-doc-html r-doc-html 4.5.1-1 install ok installed r-recommended r-recommended 4.5.1-1 install ok installed readline-common readline-common 8.2-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.25 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed shared-mime-info shared-mime-info 2.4-5+b2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 3.0.2+dfsg-2 install ok installed sq sq 1.3.1-2+b1 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-8 install ok installed tzdata tzdata 2025b-5 install ok installed ucf ucf 3.0052 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed unixodbc-common unixodbc-common 2.3.12-2 install ok installed unzip unzip 6.0-29 install ok installed util-linux util-linux 2.41.1-1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+24 install ok installed x11-utils x11-utils 7.7+7 install ok installed x11-xserver-utils x11-xserver-utils 7.7+11 install ok installed xauth xauth 1:1.1.2-1.1 install ok installed xdg-user-dirs xdg-user-dirs 0.18-2 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed xz-utils xz-utils 5.8.1-1 install ok installed zip zip 3.0-15 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zutty zutty 0.16.2.20241020+dfsg1-1 3m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', 'remove', '--allow-remove-essential', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'cython3', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gdal-data', 'gdal-plugins:amd64', 'gfortran', 'gfortran-14', 'gfortran-14-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'gpgv', 'graphviz', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20240722:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom3:amd64', 'libapparmor1:amd64', 'libarmadillo14', 'libarpack2t64:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcfitsio10t64:amd64', 'libcgraph6:amd64', 'libclang-cpp19', 'libclone-perl:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0t64:amd64', 'libgav1-1:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdal36:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgeos-c1t64:amd64', 'libgeos3.13.1:amd64', 'libgeotiff5:amd64', 'libgfortran-14-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgles2:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpgme11t64:amd64', 'libgpgmepp6t64:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1t64:amd64', 'libkmldom1t64:amd64', 'libkmlengine1t64:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libminizip1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnetcdf22:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnpth0t64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc2:amd64', 'libodbccr2:amd64', 'libodbcinst2:amd64', 'libogdi4.1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libpoppler147:amd64', 'libpq5:amd64', 'libproc2-0:amd64', 'libproj25:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libspatialite8t64:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsvtav1enc2:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-iconv-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-215:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2t64:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libze1:amd64', 'libzopfli1', 'libzstd-dev:amd64', 'linux-libc-dev', 'linux-sysctl-defaults', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'luit', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkgconf:amd64', 'pkgconf-bin', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-inflect', 'python3-iniconfig', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pluggy', 'python3-pomegranate', 'python3-pooch', 'python3-psutil', 'python3-pydot', 'python3-pyfaidx', 'python3-pygments', 'python3-pygraphviz', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3-zopfli', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unixodbc-common', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'zutty', 'cnvkit'] 4m4.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser binfmt-support binutils binutils-common binutils-gold binutils-gold-x86-64-linux-gnu binutils-x86-64-linux-gnu blt build-essential bzip2 bzip2-doc ca-certificates cnvkit cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-liberation fonts-liberation-sans-narrow fonts-lyx fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv graphviz icu-devtools isympy-common isympy3 javascript-common krb5-locales libabsl20240722 libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libann0 libaom3 libapparmor1 libarmadillo14 libarpack2t64 libasan8 libassuan9 libatomic1 libauthen-sasl-perl libavif16 libbinutils libblas-dev libblas3 libblosc1 libblosc2-4 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcdt5 libcfitsio10t64 libcgraph6 libclang-cpp19 libclone-perl libcom-err2 libcrypt-dev libcrypt-urandom-perl libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdeflate-dev libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libencode-locale-perl libexpat1 libexpat1-dev libfakeroot libffi-dev libffi8 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfyba0t64 libgav1-1 libgbm1 libgcc-14-dev libgcrypt20 libgd3 libgdal36 libgdbm-compat4t64 libgdbm6t64 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran-14-dev libgfortran5 libgif7 libgl1 libgl1-mesa-dri libgles2 libglib2.0-0t64 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpgme11t64 libgpgmepp6t64 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5t64 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomenc libheif-plugin-dav1d libheif-plugin-libde265 libheif-plugin-x265 libheif1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libice6 libicu-dev libicu76 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libk5crypto3 libkeyutils1 libkmlbase1t64 libkmldom1t64 libkmlengine1t64 libkrb5-3 libkrb5support0 libksba8 liblab-gamut1 liblapack-dev liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmailtools-perl libmariadb3 libmbedcrypto16 libmbedtls21 libmbedx509-7 libminizip1t64 libmpc3 libmpfr6 libncbi-vdb3 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf22 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnspr4 libnss3 libnuma1 libodbc2 libodbccr2 libodbcinst2 libogdi4.1 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.40 libpfm4 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng-tools libpng16-16t64 libpoppler147 libpq5 libproc2-0 libproj25 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.7 libreadline-dev libreadline8t64 librtmp1 librttopo1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe2 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libssh2-1t64 libstdc++-14-dev libsvtav1enc2 libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libunistring5 liburi-perl liburiparser1 libuv1t64 libvulkan1 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libx265-215 libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxerces-c3.2t64 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxml2-dev libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 libz3-dev libze1 libzopfli1 libzstd-dev linux-libc-dev linux-sysctl-defaults llvm-19 llvm-19-dev llvm-19-linker-tools llvm-19-runtime llvm-19-tools luit make manpages manpages-dev mariadb-common media-types mesa-libgallium mesa-vulkan-drivers mysql-common ncbi-blast+ ncbi-data ncbi-vdb-data netbase numba-doc ocl-icd-libopencl1 openssl patch perl perl-modules-5.40 perl-openssl-defaults pinentry-curses pkgconf pkgconf-bin poppler-data procps proj-bin proj-data psmisc publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-attr python3-autocommand python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cpuinfo python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-gdal python3-html5lib python3-idna python3-inflect python3-iniconfig python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-joblib python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-platformdirs python3-pluggy python3-pomegranate python3-pooch python3-psutil python3-pydot python3-pyfaidx python3-pygments python3-pygraphviz python3-pyparsing python3-pysam python3-pytest python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-sklearn python3-sklearn-lib python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-threadpoolctl python3-tk python3-tqdm python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-webencodings python3-wheel python3-yaml python3-zopfli python3.13 python3.13-dev python3.13-minimal python3.13-tk r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rpcsvc-proto sensible-utils sgml-base shared-mime-info sphinx-rtd-theme-common sq tk8.6-blt2.5 ucf unicode-data unixodbc-common unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev zutty 0 upgraded, 0 newly installed, 599 to remove and 0 not upgraded. After this operation, 2783 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58677 files and directories currently installed.) Removing python3-gdal (3.10.3+dfsg-1) ... Removing libgdal36:amd64 (3.10.3+dfsg-1) ... Removing libpoppler147:amd64 (25.03.0-5) ... Removing libgpgmepp6t64:amd64 (1.24.2-3) ... Removing libgpgme11t64:amd64 (1.24.2-3) ... Removing gnupg (2.4.7-21) ... Removing gpg-wks-client (2.4.7-21+b3) ... Removing dirmngr (2.4.7-21+b3) ... Removing dbus (1.16.2-2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-system-bus-common (1.16.2-2) ... Removing adduser (3.152) ... Removing binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing r-base-dev (4.5.1-1) ... Removing build-essential (12.12) ... Removing g++ (4:14.2.0-1) ... Removing gfortran (4:14.2.0-1) ... Removing gcc (4:14.2.0-1) ... Removing dpkg-dev (1.22.21) ... Removing g++-x86-64-linux-gnu (4:14.2.0-1) ... Removing cnvkit (0.9.12-1) ... Removing python3-biopython (1.85+dfsg-4) ... Removing python3-reportlab (4.4.2-1) ... Removing python3-matplotlib (3.10.1+dfsg1-4) ... Removing python3-pil.imagetk:amd64 (11.1.0-5+b1) ... Removing python3-pil:amd64 (11.1.0-5+b1) ... Removing python3-tk:amd64 (3.13.5-1) ... Removing blt (2.5.3+dfsg-8) ... Removing bzip2 (1.0.8-6) ... Removing bzip2-doc (1.0.8-6) ... Removing python3-pooch (1.8.2-1) ... Removing python3-requests (2.32.3+dfsg-5) ... Removing r-recommended (4.5.1-1) ... Removing r-cran-rpart (4.1.24-1) ... Removing r-cran-survival (3.8-3-1) ... Removing r-cran-spatial (7.3-18-1) ... Removing x11-xserver-utils (7.7+11) ... Removing cpp (4:14.2.0-1) ... Removing gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Removing python3-pomegranate (0.15.0-1+b1) ... Removing cython3 (3.0.11+dfsg-2+b1) ... Removing dbus-daemon (1.16.2-2) ... Removing dbus-bin (1.16.2-2) ... Removing dbus-session-bus-common (1.16.2-2) ... Removing fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing python3-pygraphviz (1.14-1+b2) ... Removing x11-utils (7.7+7) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-8) ... Removing python3-pydot (2.0.0-3) ... Removing graphviz (2.42.4-3) ... Removing python-matplotlib-data (3.10.1+dfsg1-4) ... Removing fonts-dejavu-extra (2.37-8) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing numba-doc (0.61.2+dfsg-1) ... Removing sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing fonts-liberation (1:2.1.5-3) ... Removing fonts-liberation-sans-narrow (1:1.07.6-4) ... Removing fonts-lyx (2.4.3-1) ... Removing g++-14 (14.2.0-19) ... Removing g++-14-x86-64-linux-gnu (14.2.0-19) ... Removing gdal-data (3.10.3+dfsg-1) ... Removing gdal-plugins:amd64 (3.10.3+dfsg-1) ... Removing gfortran-14 (14.2.0-19) ... Removing gfortran-14-x86-64-linux-gnu (14.2.0-19) ... Removing gnupg-l10n (2.4.7-21) ... Removing gnupg-utils (2.4.7-21+b3) ... Removing gpg (2.4.7-21+b3) ... Removing gpg-agent (2.4.7-21+b3) ... Removing gpgsm (2.4.7-21+b3) ... Removing gpgconf (2.4.7-21+b3) ... Removing gpgv (2.4.7-21+b3) ... Removing libicu-dev:amd64 (76.1-4) ... Removing icu-devtools (76.1-4) ... Removing isympy3 (1.13.3-5) ... Removing isympy-common (1.13.3-5) ... Removing javascript-common (12+nmu1) ... Removing krb5-locales (1.21.3-5) ... Removing libhdf4-0-alt:amd64 (4.3.0-1+b1) ... Removing python3-tables (3.10.2-2) ... Removing python3-tables-lib (3.10.2-2+b1) ... Removing libalgorithm-merge-perl (0.08-5) ... Removing libalgorithm-diff-xs-perl (0.04-9) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libann0 (1.1.2+doc-9+b1) ... Removing libheif-plugin-aomenc:amd64 (1.19.8-1) ... Removing libapparmor1:amd64 (4.1.0-1) ... Removing libarmadillo14 (1:14.2.3+dfsg-1+b1) ... Removing libarpack2t64:amd64 (3.9.1-6) ... Removing libstdc++-14-dev:amd64 (14.2.0-19) ... Removing libgfortran-14-dev:amd64 (14.2.0-19) ... Removing pinentry-curses (1.3.2-3) ... Removing libassuan9:amd64 (3.0.2-2) ... Removing libfile-mimeinfo-perl (0.35-1) ... Removing shared-mime-info (2.4-5+b2) ... Removing libraqm0:amd64 (0.10.3-1) ... Removing libauthen-sasl-perl (2.1900-1) ... 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Removing libnspr4:amd64 (2:4.36-1) ... Removing libx265-215:amd64 (4.1-2) ... Removing libnuma1:amd64 (2.0.19-1) ... Removing libodbccr2:amd64 (2.3.12-2) ... Removing libopenjp2-7:amd64 (2.5.3-2.1) ... Removing libpcre2-16-0:amd64 (10.45-1) ... Removing libpcre2-32-0:amd64 (10.45-1) ... Removing libpcre2-posix3:amd64 (10.45-1) ... Removing libpfm4:amd64 (4.13.0+git106-g3e4031b-1) ... Removing libpipeline1:amd64 (1.5.8-1) ... Removing pkgconf:amd64 (1.8.1-4) ... Removing pkgconf-bin (1.8.1-4) ... Removing libpkgconf3:amd64 (1.8.1-4) ... Removing libpng-tools (1.6.48-1) ... Removing libqhull-r8.0:amd64 (2020.2-6+b2) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg1-9) ... Removing libwebpmux3:amd64 (1.5.0-0.1) ... Removing libwebpdemux2:amd64 (1.5.0-0.1) ... Removing libsnappy1v5:amd64 (1.2.2-1) ... Removing libtbbmalloc2:amd64 (2022.1.0-1) ... Removing python3.13-tk (3.13.5-2) ... Removing libtext-iconv-perl:amd64 (1.7-8+b4) ... Removing libtie-ixhash-perl (1.23-4) ... Removing libtirpc-dev:amd64 (1.3.6+ds-1) ... Removing liburiparser1:amd64 (0.9.8+dfsg-2) ... Removing libuv1t64:amd64 (1.50.0-2) ... Removing libvulkan1:amd64 (1.4.321.0-1) ... Removing xauth (1:1.1.2-1.1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b4) ... Removing libx11-protocol-perl (0.56-9) ... Removing libxcb-glx0:amd64 (1.17.0-2+b1) ... Removing libxcb-shape0:amd64 (1.17.0-2+b1) ... Removing libxcomposite1:amd64 (1:0.4.6-1) ... Removing libxcursor1:amd64 (1:1.2.3-1) ... Removing libxxf86dga1:amd64 (2:1.1.5-1+b3) ... Removing libxfixes3:amd64 (1:6.0.0-2+b4) ... Removing libxi6:amd64 (2:1.8.2-1) ... Removing libxinerama1:amd64 (2:1.1.4-3+b4) ... Removing libxkbfile1:amd64 (1:1.1.0-1+b4) ... Removing libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Removing libxmuu1:amd64 (2:1.1.3-3+b4) ... Removing libxnvctrl0:amd64 (535.171.04-1+b2) ... Removing libxrandr2:amd64 (2:1.5.4-1+b3) ... Removing libxtst6:amd64 (2:1.2.5-1) ... Removing libxv1:amd64 (2:1.0.11-1.1+b3) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing libz3-dev:amd64 (4.13.3-1) ... Removing libze1:amd64 (1.24.1-2) ... Removing libzstd-dev:amd64 (1.5.7+dfsg-1) ... Removing linux-sysctl-defaults (4.14) ... Removing luit (2.0.20240910-1) ... Removing 'diversion of /usr/bin/luit to /usr/bin/luit.x11-utils by luit' Removing 'diversion of /usr/share/man/man1/luit.1.gz to /usr/share/man/man1/luit.x11-utils.1.gz by luit' Removing make (4.4.1-2) ... Removing manpages-dev (6.9.1-1) ... Removing manpages (6.9.1-1) ... Removing mariadb-common (1:11.8.2-1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing mysql-common (5.8+1.1.1) ... Removing ncbi-data (6.1.20170106+dfsg2-6) ... Removing ncbi-vdb-data (3.2.1+dfsg-2) ... Removing ocl-icd-libopencl1:amd64 (2.3.3-1) ... Removing patch (2.8-2) ... Removing poppler-data (0.4.12-1) ... Removing proj-bin (9.6.0-1) ... Removing psmisc (23.7-2) ... Removing publicsuffix (20250328.1952-0.1) ... Removing python3-babel (2.17.0-1) ... Removing python-babel-localedata (2.17.0-1) ... Removing python-odf-tools (1.4.2-4) ... Removing python-tables-data (3.10.2-2) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-bottleneck (1.4.2+ds1-2+b1) ... Removing python3-bs4 (4.13.4-2) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.2-1) ... Removing python3-contourpy (1.3.1-2) ... Removing python3-cpuinfo (9.0.0+git20221119-3) ... Removing python3-cssselect (1.3.0-1) ... Removing python3-cycler (0.12.1-2) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-odf (1.4.2-4) ... Removing python3-defusedxml (0.7.1-3) ... Removing python3-et-xmlfile (2.0.0-1) ... Removing python3-freetype (2.5.1-2) ... Removing python3-html5lib (1.2-2) ... Removing python3-idna (3.10-1) ... Removing python3-iniconfig (1.1.1-2) ... Removing python3-jaraco.context (6.0.1-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-jinja2 (3.1.6-1) ... Removing python3-joblib (1.4.2-4) ... Removing python3-kiwisolver (1.4.7-3+b1) ... Removing python3-legacy-cgi (2.6.3-1) ... Removing python3-markupsafe (2.1.5-1+b3) ... Removing python3-more-itertools (10.7.0-1) ... Removing python3-numexpr (2.11.0-1) ... Removing python3-olefile (0.47-1) ... Removing python3-pyfaidx (0.8.1.3-2) ... Removing python3-packaging (25.0-1) ... Removing python3-pluggy (1.6.0-1) ... Removing python3-psutil (7.0.0-2) ... Removing python3-pygments (2.18.0+dfsg-2) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-tz (2025.2-3) ... Removing python3-pytz (2025.2-3) ... Removing python3-soupsieve (2.7-1) ... Removing python3-threadpoolctl (3.1.0-1) ... Removing python3-typing-extensions (4.14.1-1) ... Removing python3-urllib3 (2.3.0-3) ... Removing python3-webencodings (0.5.1-5) ... Removing r-bioc-biocgenerics (0.52.0-2) ... Removing r-cran-boot (1.3-31-1) ... Removing r-cran-class (7.3-23-1) ... Removing r-cran-cluster (2.1.8.1-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-foreign (0.8.90-1) ... Removing r-cran-kernsmooth (2.23-26-1) ... Removing r-cran-nlme (3.1.168-1) ... Removing r-cran-mass (7.3-65-1) ... Removing r-cran-nnet (7.3-20-1) ... Removing r-doc-html (4.5.1-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31+nmu1) ... Removing sq (1.3.1-2+b1) ... Removing unixodbc-common (2.3.12-2) ... Removing xdg-user-dirs (0.18-2) ... Removing xz-utils (5.8.1-1) ... Removing gcc-14 (14.2.0-19) ... Removing binutils (2.45-3) ... Removing libgprofng0:amd64 (2.45-3) ... Removing gcc-x86-64-linux-gnu (4:14.2.0-1) ... Removing gcc-14-x86-64-linux-gnu (14.2.0-19) ... Removing binutils-x86-64-linux-gnu (2.45-3) ... Removing libctf0:amd64 (2.45-3) ... Removing libbinutils:amd64 (2.45-3) ... Removing binutils-common:amd64 (2.45-3) ... Removing binutils-gold (2.44-2) ... Removing binutils-gold-x86-64-linux-gnu (2.44-2) ... Removing r-cran-matrix (1.7-3-1) ... Removing cpp-14 (14.2.0-19) ... Removing cpp-x86-64-linux-gnu (4:14.2.0-1) ... Removing cpp-14-x86-64-linux-gnu (14.2.0-19) ... Removing libgvc6 (2.42.4-3) ... Removing libgd3:amd64 (2.3.3-13) ... Removing libavif16:amd64 (1.2.1-1.2) ... Removing libgav1-1:amd64 (0.19.0-3+b1) ... Removing libabsl20240722:amd64 (20240722.0-4) ... Removing libhdf5-310:amd64 (1.14.5+repack-3) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing libaom3:amd64 (3.12.1-1) ... Removing libgcc-14-dev:amd64 (14.2.0-19) ... Removing libasan8:amd64 (15.2.0-1) ... Removing libncurses-dev:amd64 (6.5+20250216-2) ... Removing libc6-dev:amd64 (2.41-12) ... Removing libc-dev-bin (2.41-12) ... Removing libcc1-0:amd64 (15.2.0-1) ... Removing libcgraph6:amd64 (2.42.4-3) ... Removing libcdt5:amd64 (2.42.4-3) ... Removing libcrypt-dev:amd64 (1:4.4.38-1) ... Removing libctf-nobfd0:amd64 (2.45-3) ... Removing libproj25:amd64 (9.6.0-1) ... Removing libcurl3t64-gnutls:amd64 (8.14.1-2) ... Removing mesa-libgallium:amd64 (25.0.7-2) ... Removing libdrm-amdgpu1:amd64 (2.4.124-2) ... Removing libdrm-intel1:amd64 (2.4.124-2) ... Removing libllvm19:amd64 (1:19.1.7-3+b1) ... Removing libedit2:amd64 (3.1-20250104-1) ... Removing libelf1t64:amd64 (0.192-4) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ... Removing libhwasan0:amd64 (15.2.0-1) ... Removing libisl23:amd64 (0.27-1) ... Removing libitm1:amd64 (15.2.0-1) ... Removing libjansson4:amd64 (2.14-2+b3) ... Removing libyuv0:amd64 (0.0.1904.20250204-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing liblsan0:amd64 (15.2.0-1) ... Removing libltdl7:amd64 (2.5.4-4) ... Removing libmpc3:amd64 (1.3.1-1+b3) ... Removing libmpfr6:amd64 (4.2.2-1) ... Removing libncurses6:amd64 (6.5+20250216-2) ... Removing libngtcp2-16:amd64 (1.11.0-1) ... Removing libpathplan4:amd64 (2.42.4-3) ... Removing libpciaccess0:amd64 (0.17-3+b3) ... Removing libquadmath0:amd64 (15.2.0-1) ... Removing librav1e0.7:amd64 (0.7.1-9+b2) ... Removing libsensors5:amd64 (1:3.6.2-2) ... Removing libsensors-config (1:3.6.2-2) ... Removing libsframe2:amd64 (2.45-3) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libtsan2:amd64 (15.2.0-1) ... Removing libubsan1:amd64 (15.2.0-1) ... Removing libx11-xcb1:amd64 (2:1.8.12-1) ... Removing libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Removing libxcb-sync1:amd64 (1.17.0-2+b1) ... Removing libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Removing libxcb-present0:amd64 (1.17.0-2+b1) ... Removing libxcb-randr0:amd64 (1.17.0-2+b1) ... Removing libxpm4:amd64 (1:3.5.17-1+b3) ... Removing libxshmfence1:amd64 (1.3.3-1) ... Removing libz3-4:amd64 (4.13.3-1) ... Removing linux-libc-dev (6.12.38-1) ... Removing proj-data (9.6.0-1) ... Removing r-cran-lattice (0.22-7-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing r-base-core (4.5.1-1) ... Removing libpangocairo-1.0-0:amd64 (1.56.3-1) ... Removing libpangoft2-1.0-0:amd64 (1.56.3-1) ... Removing libpango-1.0-0:amd64 (1.56.3-1) ... Removing fontconfig (2.15.0-2.3) ... Removing libtk8.6:amd64 (8.6.16-1) ... Removing libxft2:amd64 (2.3.6-1+b4) ... Removing libharfbuzz0b:amd64 (10.2.0-1+b1) ... Removing libglib2.0-0t64:amd64 (2.84.3-1) ... Removing libatomic1:amd64 (15.2.0-1) ... Removing libcairo2:amd64 (1.18.4-1+b1) ... Removing libtirpc3t64:amd64 (1.3.6+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libcurl4t64:amd64 (8.14.1-2) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-4) ... Removing libtiff6:amd64 (4.7.0-3) ... Removing libdeflate0:amd64 (1.23-2) ... Removing libdrm2:amd64 (2.4.124-2) ... Removing libdrm-common (2.4.124-2) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libgnutls30t64:amd64 (3.8.9-3) ... Removing libgomp1:amd64 (15.2.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Removing libsm6:amd64 (2:1.2.6-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libicu76:amd64 (76.1-4) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-2) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing libldap2:amd64 (2.6.10+dfsg-1) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing ucf (3.0052) ... Removing procps (2:4.0.4-9) ... Removing libnghttp2-14:amd64 (1.64.0-1.1) ... Removing libnghttp3-9:amd64 (1.8.0-1) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libpaper-utils (2.2.5-0.3+b2) ... Removing libpaper2:amd64 (2.2.5-0.3+b2) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libproc2-0:amd64 (2:4.0.4-9) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libtcl8.6:amd64 (8.6.16+dfsg-1) ... Removing libtext-wrapi18n-perl (0.06-10) ... Removing libtext-charwidth-perl:amd64 (0.04-11+b4) ... Removing libthai-data (0.1.29-2) ... Removing libtirpc-common (1.3.6+ds-1) ... Removing libunistring5:amd64 (1.3-2) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxrender1:amd64 (1:0.9.12-1) ... Removing libxss1:amd64 (1:1.2.3-1+b3) ... Removing sensible-utils (0.0.25) ... Removing unzip (6.0-29) ... Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-15) ... Removing libfontconfig1:amd64 (2.15.0-2.3) ... Removing fontconfig-config (2.15.0-2.3) ... Removing fonts-urw-base35 (20200910-8) ... Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-3+b3) ... Removing xfonts-utils (1:7.7+7) ... Removing libfontenc1:amd64 (1:1.1.8-1+b2) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-6) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libpng16-16t64:amd64 (1.6.48-1) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing liblwp-protocol-https-perl (6.14-1) ... Removing libwww-perl (6.78-1) ... Removing libhttp-negotiate-perl (6.01-2) ... Removing libheif1:amd64 (1.19.8-1) ... Removing libheif-plugin-dav1d:amd64 (1.19.8-1) ... Removing libdav1d7:amd64 (1.5.1-1) ... Removing python3-fonttools (4.57.0-1) ... Removing python3-zopfli (0.2.3.post1-1+b1) ... Removing libfile-listing-perl (6.16-1) ... Removing python3-lxml:amd64 (5.4.0-1) ... Removing libxslt1.1:amd64 (1.1.35-1.2) ... Removing libgcrypt20:amd64 (1.11.2-2) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libhttp-cookies-perl (6.11-1) ... Removing libnet-http-perl (6.23-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.83-1+b2) ... Removing libio-socket-ssl-perl (2.089-1) ... Removing libnet-ssleay-perl:amd64 (1.94-3) ... Removing libgpg-error0:amd64 (1.55-2) ... Removing libhtml-tagset-perl (3.24-1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libtry-tiny-perl (0.32-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Removing libzopfli1 (1.0.3-3) ... Removing perl-openssl-defaults:amd64 (7+b2) ... Removing python3-brotli (1.1.0-2+b7) ... Removing python3-fs (2.4.16-7) ... Removing python3-lz4 (4.4.0+dfsg-2) ... Removing python3-sympy (1.13.3-5) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-platformdirs (4.3.7-1) ... Removing python3-unicodedata2 (15.1.0+ds-1+b4) ... Removing unicode-data (15.1.0-1) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-scipy (1.15.3-1) ... Removing python3-numpy (1:2.2.4+ds-1) ... Removing liblapack3:amd64 (3.12.1-6) ... Removing libblas3:amd64 (3.12.1-6) ... Removing libhttp-message-perl (7.00-2) ... Removing libclone-perl:amd64 (0.47-1+b1) ... Removing libheif-plugin-libde265:amd64 (1.19.8-1) ... Removing libde265-0:amd64 (1.0.16-1) ... Removing libencode-locale-perl (1.05-3) ... Removing python3-ufolib2 (0.17.1+dfsg1-1) ... Removing libhttp-date-perl (6.06-1) ... Removing liburi-perl (5.30-1) ... Removing libgfortran5:amd64 (15.2.0-1) ... Removing libio-html-perl (1.004-3) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing libtimedate-perl (2.3300-2) ... Removing openssl (3.5.1-1) ... Removing python3-attr (25.3.0-1) ... Removing python3-decorator (5.2.1-2) ... Removing python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Removing python3 (3.13.5-1) ... Removing python3-minimal (3.13.5-1) ... Removing python3.13 (3.13.5-2) ... Removing python3.13-minimal (3.13.5-2) ... Removing libexpat1:amd64 (2.7.1-2) ... Removing perl (5.40.1-6) ... Removing libperl5.40:amd64 (5.40.1-6) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libpython3-stdlib:amd64 (3.13.5-1) ... Removing libpython3.13-stdlib:amd64 (3.13.5-2) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing libpython3.13-minimal:amd64 (3.13.5-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing perl-modules-5.40 (5.40.1-6) ... Removing readline-common (8.2-6) ... Removing libffi8:amd64 (3.4.8-2) ... Processing triggers for libc-bin (2.41-12) ... 4m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', 'remove', '--allow-remove-essential', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'cython3', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gdal-data', 'gdal-plugins:amd64', 'gfortran', 'gfortran-14', 'gfortran-14-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'gpgv', 'graphviz', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20240722:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom3:amd64', 'libapparmor1:amd64', 'libarmadillo14', 'libarpack2t64:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcfitsio10t64:amd64', 'libcgraph6:amd64', 'libclang-cpp19', 'libclone-perl:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0t64:amd64', 'libgav1-1:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdal36:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgeos-c1t64:amd64', 'libgeos3.13.1:amd64', 'libgeotiff5:amd64', 'libgfortran-14-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgles2:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpgme11t64:amd64', 'libgpgmepp6t64:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1t64:amd64', 'libkmldom1t64:amd64', 'libkmlengine1t64:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libminizip1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnetcdf22:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnpth0t64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc2:amd64', 'libodbccr2:amd64', 'libodbcinst2:amd64', 'libogdi4.1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libpoppler147:amd64', 'libpq5:amd64', 'libproc2-0:amd64', 'libproj25:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libspatialite8t64:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsvtav1enc2:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-iconv-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-215:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2t64:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libze1:amd64', 'libzopfli1', 'libzstd-dev:amd64', 'linux-libc-dev', 'linux-sysctl-defaults', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'luit', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkgconf:amd64', 'pkgconf-bin', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-inflect', 'python3-iniconfig', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pluggy', 'python3-pomegranate', 'python3-pooch', 'python3-psutil', 'python3-pydot', 'python3-pyfaidx', 'python3-pygments', 'python3-pygraphviz', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3-zopfli', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unixodbc-common', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'zutty', 'cnvkit'] 4m4.8s INFO: Running scripts post_remove 4m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_remove_exceptions'] 4m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_remove_exceptions'] 4m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg', '--purge', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'cython3', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gdal-data', 'gdal-plugins:amd64', 'gfortran', 'gfortran-14', 'gfortran-14-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'gpgv', 'graphviz', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20240722:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom3:amd64', 'libapparmor1:amd64', 'libarmadillo14', 'libarpack2t64:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcfitsio10t64:amd64', 'libcgraph6:amd64', 'libclang-cpp19', 'libclone-perl:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0t64:amd64', 'libgav1-1:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdal36:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgeos-c1t64:amd64', 'libgeos3.13.1:amd64', 'libgeotiff5:amd64', 'libgfortran-14-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgles2:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpgme11t64:amd64', 'libgpgmepp6t64:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1t64:amd64', 'libkmldom1t64:amd64', 'libkmlengine1t64:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libminizip1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnetcdf22:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnpth0t64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc2:amd64', 'libodbccr2:amd64', 'libodbcinst2:amd64', 'libogdi4.1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libpoppler147:amd64', 'libpq5:amd64', 'libproc2-0:amd64', 'libproj25:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libspatialite8t64:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsvtav1enc2:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-iconv-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-215:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2t64:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libze1:amd64', 'libzopfli1', 'libzstd-dev:amd64', 'linux-libc-dev', 'linux-sysctl-defaults', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'luit', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkgconf:amd64', 'pkgconf-bin', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-inflect', 'python3-iniconfig', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pluggy', 'python3-pomegranate', 'python3-pooch', 'python3-psutil', 'python3-pydot', 'python3-pyfaidx', 'python3-pygments', 'python3-pygraphviz', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3-zopfli', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unixodbc-common', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'zutty'] 4m6.2s DUMP: (Reading database ... 5079 files and directories currently installed.) Purging configuration files for adduser (3.152) ... Purging configuration files for binfmt-support (2.2.2-7) ... Purging configuration files for binutils (2.45-3) ... Purging configuration files for binutils-common:amd64 (2.45-3) ... dpkg: warning: ignoring request to remove binutils-gold which isn't installed dpkg: warning: ignoring request to remove binutils-gold-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:14.2.0-1) ... dpkg: warning: ignoring request to remove cpp-14 which isn't installed dpkg: warning: ignoring request to remove cpp-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cython3 which isn't installed Purging configuration files for dbus (1.16.2-2) ... rmdir: failed to remove '/var/run/dbus': No such file or directory rmdir: failed to remove '/var/lib/dbus': Directory not empty dpkg: warning: while removing dbus, directory '/var/lib/dbus' not empty so not removed dpkg: warning: ignoring request to remove dbus-bin which isn't installed Purging configuration files for dbus-daemon (1.16.2-2) ... dpkg: warning: ignoring request to remove dbus-session-bus-common which isn't installed dpkg: warning: ignoring request to remove dbus-system-bus-common which isn't installed Purging configuration files for dirmngr (2.4.7-21+b3) ... 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isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate-dev which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libegl-mesa0 which isn't installed dpkg: warning: ignoring request to remove libegl1 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed Purging configuration files for libfakeroot:amd64 (1.37.1.2-1) ... dpkg: warning: ignoring request to remove libffi-dev which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfile-basedir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-desktopentry-perl which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-mimeinfo-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring 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isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpg-error-l10n which isn't installed dpkg: warning: ignoring request to remove libgpg-error0 which isn't installed dpkg: warning: ignoring request to remove libgpgme11t64 which isn't installed dpkg: warning: ignoring request to remove libgpgmepp6t64 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libgts-0.7-5t64 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed Purging configuration files for libgvc6 (2.42.4-3) ... dpkg: 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which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu-dev which isn't installed dpkg: warning: ignoring request to remove libicu76 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libio-compress-brotli-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libipc-system-simple-perl which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libjson-c5 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkmlbase1t64 which isn't installed dpkg: warning: 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which isn't installed Purging configuration files for libtirpc-common (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove liburiparser1 which isn't installed dpkg: warning: ignoring request to remove libuv1t64 which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-protocol-perl which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libx265-215 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxerces-c3.2t64 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbfile1 which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxml2-dev which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6t64 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxv1 which isn't installed dpkg: warning: ignoring request to remove libxxf86dga1 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove libz3-dev which isn't installed dpkg: warning: ignoring request to remove libze1 which isn't installed dpkg: warning: ignoring request to remove libzopfli1 which isn't installed dpkg: warning: ignoring request to remove libzstd-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove linux-sysctl-defaults which isn't installed dpkg: warning: ignoring request to remove llvm-19 which isn't installed dpkg: warning: ignoring request to remove llvm-19-dev which isn't installed dpkg: warning: ignoring request to remove llvm-19-linker-tools which isn't installed dpkg: warning: ignoring request to remove llvm-19-runtime which isn't installed dpkg: warning: ignoring request to remove llvm-19-tools which isn't installed Purging configuration files for luit (2.0.20240910-1) ... dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for mariadb-common (1:11.8.2-1) ... Purging configuration files for media-types (13.0.0) ... dpkg: warning: ignoring request to remove mesa-libgallium which isn't installed dpkg: warning: ignoring request to remove mesa-vulkan-drivers which isn't installed Purging configuration files for mysql-common (5.8+1.1.1) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-6) ... Purging configuration files for ncbi-vdb-data (3.2.1+dfsg-2) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove numba-doc which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openssl (3.5.1-1) ... dpkg: warning: ignoring request to remove patch which isn't installed Purging configuration files for perl (5.40.1-6) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for pkgconf:amd64 (1.8.1-4) ... dpkg: warning: ignoring request to remove pkgconf-bin which isn't installed Purging configuration files for poppler-data (0.4.12-1) ... Purging configuration files for procps (2:4.0.4-9) ... dpkg: warning: ignoring request to remove proj-bin which isn't installed dpkg: warning: ignoring request to remove proj-data which isn't installed dpkg: warning: ignoring request to remove psmisc which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed Purging configuration files for python-matplotlib-data (3.10.1+dfsg1-4) ... dpkg: warning: ignoring request to remove python-odf-doc which isn't installed dpkg: warning: ignoring request to remove python-odf-tools which isn't installed dpkg: warning: ignoring request to remove python-tables-data which isn't installed Purging configuration files for python3 (3.13.5-1) ... dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-babel which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-bottleneck which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cpuinfo which isn't installed dpkg: warning: ignoring request to remove python3-cssselect which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-defusedxml which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-et-xmlfile which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-gdal which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-iniconfig which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-joblib which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-legacy-cgi which isn't installed dpkg: warning: ignoring request to remove python3-llvmlite which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numba which isn't installed dpkg: warning: ignoring request to remove python3-numexpr which isn't installed Purging configuration files for python3-numpy (1:2.2.4+ds-1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-odf which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-openpyxl which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pip which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-pomegranate which isn't installed dpkg: warning: ignoring request to remove python3-pooch which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pydot which isn't installed dpkg: warning: ignoring request to remove python3-pyfaidx which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pygraphviz which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pytest which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-sklearn which isn't installed dpkg: warning: ignoring request to remove python3-sklearn-lib which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed Purging configuration files for python3-sympy (1.13.3-5) ... dpkg: warning: ignoring request to remove python3-tables which isn't installed dpkg: warning: ignoring request to remove python3-tables-lib which isn't installed dpkg: warning: ignoring request to remove python3-threadpoolctl which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-wheel which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zopfli which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed dpkg: warning: ignoring request to remove python3.13-dev which isn't installed Purging configuration files for python3.13-minimal (3.13.5-2) ... dpkg: warning: ignoring request to remove python3.13-tk which isn't installed Purging configuration files for r-base-core (4.5.1-1) ... dpkg: warning: ignoring request to remove r-base-dev which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-dnacopy which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for shared-mime-info (2.4-5+b2) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove sq which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed Purging configuration files for ucf (3.0052) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for unixodbc-common (2.3.12-2) ... dpkg: warning: ignoring request to remove unzip which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+24) ... Purging configuration files for x11-utils (7.7+7) ... Purging configuration files for x11-xserver-utils (7.7+11) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.18-2) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed dpkg: warning: ignoring request to remove zutty which isn't installed 4m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg', '--purge', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'cython3', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gdal-data', 'gdal-plugins:amd64', 'gfortran', 'gfortran-14', 'gfortran-14-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'gpgv', 'graphviz', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20240722:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom3:amd64', 'libapparmor1:amd64', 'libarmadillo14', 'libarpack2t64:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcfitsio10t64:amd64', 'libcgraph6:amd64', 'libclang-cpp19', 'libclone-perl:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0t64:amd64', 'libgav1-1:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdal36:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgeos-c1t64:amd64', 'libgeos3.13.1:amd64', 'libgeotiff5:amd64', 'libgfortran-14-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgles2:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpgme11t64:amd64', 'libgpgmepp6t64:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1t64:amd64', 'libkmldom1t64:amd64', 'libkmlengine1t64:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libminizip1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnetcdf22:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnpth0t64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc2:amd64', 'libodbccr2:amd64', 'libodbcinst2:amd64', 'libogdi4.1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libpoppler147:amd64', 'libpq5:amd64', 'libproc2-0:amd64', 'libproj25:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libspatialite8t64:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsvtav1enc2:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-iconv-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-215:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2t64:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libze1:amd64', 'libzopfli1', 'libzstd-dev:amd64', 'linux-libc-dev', 'linux-sysctl-defaults', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'luit', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkgconf:amd64', 'pkgconf-bin', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-inflect', 'python3-iniconfig', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pluggy', 'python3-pomegranate', 'python3-pooch', 'python3-psutil', 'python3-pydot', 'python3-pyfaidx', 'python3-pygments', 'python3-pygraphviz', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3-zopfli', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unixodbc-common', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'zutty'] 4m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg', '--purge', 'cnvkit'] 4m6.3s DUMP: dpkg: warning: ignoring request to remove cnvkit which isn't installed 4m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg', '--purge', 'cnvkit'] 4m6.3s INFO: Running scripts post_purge 4m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_purge_exceptions'] 4m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_purge_exceptions'] 4m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg', '--purge', '--pending'] 4m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg', '--purge', '--pending'] 4m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg', '--remove', '--pending'] 4m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg', '--remove', '--pending'] 4m6.3s INFO: Running scripts post_test 4m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_test_exceptions'] 4m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'tmp/scripts/post_test_exceptions'] 4m6.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 4m6.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 4m7.1s DEBUG: No broken symlinks as far as we can find. 4m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg-divert', '--list'] 4m7.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 4m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'dpkg-divert', '--list'] 4m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', 'clean'] 4m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptyks1pfe', 'apt-get', 'clean'] 4m7.3s DEBUG: Recording chroot state 4m7.8s INFO: PASS: Installation and purging test. 4m8.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/shm'] 4m8.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/shm'] 4m8.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/console'] 4m8.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/console'] 4m8.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/ptmx'] 4m8.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/ptmx'] 4m8.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/pts'] 4m8.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/dev/pts'] 4m8.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/proc'] 4m8.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptyks1pfe/proc'] 4m8.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 4m8.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptyks1pfe'] 4m8.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmptyks1pfe 4m8.2s INFO: PASS: All tests. 4m8.2s INFO: piuparts run ends. ret=0 End: 2025-08-18 01:54:00 GMT