Start: 2026-10-11 02:50:46 GMT Package: cnvkit Version: 0.9.14-1 Installed-Size: 98983 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bioframe, python3-biopython (>> 1.85), python3-matplotlib (>> 3.9), python3-numpy, python3-pandas (>> 2.2.3), python3-pyfaidx (>> 0.8.1.3), python3-pysam (>> 0.23.0), python3-reportlab, python3-scipy (>> 1.14.1), python3-sklearn, python3-statsmodels, python3:any, r-bioc-dnacopy Description: Copy number variant detection from targeted DNA sequencing Homepage: https://cnvkit.readthedocs.org Description-md5: 0b8ab5ba6be9de3379277ab7a92a7b5d Section: science Priority: optional Filename: pool/main/c/cnvkit/cnvkit_0.9.14-1_all.deb Size: 22811696 MD5sum: 3779cbf8fcd2e8da0ad0d34f2cb54a26 SHA256: 9d73a514ca9da972701c132cc3f6b917fae74afe13c03970e58ffe250d65b68a Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt cnvkit=0.9.14-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt cnvkit=0.9.14-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.111+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.111-1 (2026-09-28) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp8lqm3dre 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp8lqm3dre 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/16', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/16', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp8lqm3dre/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', 'update'] 0m2.2s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6630 kB] Fetched 16.8 MB in 1s (15.4 MB/s) Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libc-bin libc-gconv-modules-extra libc6 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3590 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libc-bin amd64 2.43-7 [621 kB] Preconfiguring packages ... Fetched 3590 kB in 0s (54.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libc-gconv-modules-extra_2.43-7_amd64.deb ... Unpacking libc-gconv-modules-extra:amd64 (2.43-7) over (2.43-6) ... Setting up libc-gconv-modules-extra:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libc6_2.43-7_amd64.deb ... Unpacking libc6:amd64 (2.43-7) over (2.43-6) ... Setting up libc6:amd64 (2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libc-bin_2.43-7_amd64.deb ... Unpacking libc-bin (2.43-7) over (2.43-6) ... Setting up libc-bin (2.43-7) ... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.4s DUMP: e94c65034580616febaf62b49094211c - 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.4s INFO: Running scripts post_setup 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_dummy_users'] 0m5.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_dummy_users'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_forbid_home'] 0m5.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_forbid_home'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_zz_backports'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_setup_zz_backports'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', 'clean'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', 'clean'] 0m5.1s DEBUG: Recording chroot state 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.7s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.2-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.2-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg-divert', '--list'] 0m5.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg-divert', '--list'] 0m5.7s INFO: Running scripts is_testable 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/is_testable_uninstallable'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/is_testable_uninstallable'] 0m5.7s INFO: apt-cache does not know about any of the requested packages 0m5.7s INFO: Running scripts pre_test 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_test_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_test_exceptions'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_test_root_password'] 0m5.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_test_root_password'] 0m5.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 0m6.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 0m6.3s DEBUG: No broken symlinks as far as we can find. 0m6.3s INFO: Running scripts pre_install 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 0m6.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 0m6.9s DEBUG: No broken symlinks as far as we can find. 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-cache', 'policy'] 0m8.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-cache', 'policy'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-cache', 'policy', 'cnvkit'] 0m8.2s DUMP: cnvkit: Installed: (none) Candidate: 0.9.14-1 Version table: 0.9.14-1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-cache', 'policy', 'cnvkit'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', '-y', 'install', 'cnvkit=0.9.14-1'] 2m19.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: alacritty binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 bzip2-doc ca-certificates cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-lato fonts-lyx fonts-roboto-slab fonts-urw-base35 g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-16 gfortran-16-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools isa-support isympy-common isympy3 javascript-common krb5-locales libabsl20260526 libada-url0-3 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libamd3 libaom3 libasan8 libatomic1 libauthen-sasl-perl libavif16 libbinutils libblas-dev libblas3 libblosc1 libblosc2-7 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcamd3 libcares2 libcc1-0 libccolamd3 libcholmod5 libclone-perl libcolamd3 libcom-err2 libcrypt-urandom-perl libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdav1d7 libdbus-1-3 libdeflate-dev libdeflate0 libdisplay-info3 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libdsdp-5.8t64 libedit2 libelf1t64 libencode-locale-perl libexpat1 libexpat1-dev libfakeroot libffi8 libfftw3-double3 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgbm1 libgcc-16-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran-16-dev libgfortran5 libgl1 libgl1-mesa-dri libglib2.0-0t64 libglib2.0-data libglpk40 libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgraphite2-3 libgsl28 libgslcblas0 libgssapi-krb5-2 libharfbuzz-subset0 libharfbuzz0b libhdf5-320 libhdr-histogram6 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libice6 libicu-dev libicu78 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllhttp9.4 libllvm21 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncbi-vdb3 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnode137 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.42 libpixman-1-0 libpkgconf7 libpng-dev libpng-tools libpng16-16t64 libproc2-1 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.14 libpython3.14-dev libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.8 libreadline-dev libreadline8t64 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe3 libsharpyuv0 libsimdjson33 libsimdutf35 libskia146 libsm6 libsnappy1v5 libsqlite3-0 libssh2-1t64 libstdc++-16-dev libsuitesparseconfig7 libsvtav1enc4 libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libumfpack6 libunistring5 liburi-perl libuv1t64 libvulkan1 libwayland-client0 libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2-16 libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 libze1 libzopfli1 libzstd-dev linux-libc-dev linux-sysctl-defaults luit make manpages manpages-dev media-types mesa-libgallium mesa-vulkan-drivers ncbi-blast+ ncbi-data ncbi-vdb-data ncurses-term netbase node-acorn node-balanced-match node-brace-expansion node-commander node-corepack node-debug node-llhttp node-lru-cache node-mathjax-full node-minimatch node-mj-context-menu node-ms node-semver node-speech-rule-engine node-undici node-xmldom node-xtend nodejs nodejs-doc numba-doc ocl-icd-libopencl1 openssl patch pci.ids perl perl-modules-5.42 perl-openssl-defaults pkgconf pkgconf-bin procps psmisc publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-attr python3-babel python3-bioframe python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-colorama python3-contourpy python3-cpuinfo python3-cssselect python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-et-xmlfile python3-fonttools python3-freetype python3-html5lib python3-idna python3-iniconfig python3-jinja2 python3-joblib python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-narwhals python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-patsy python3-pil python3-pil.imagetk python3-pip python3-platformdirs python3-pluggy python3-pooch python3-psutil python3-pyfaidx python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-skia-pathops python3-sklearn python3-sklearn-lib python3-soupsieve python3-statsmodels python3-statsmodels-lib python3-sympy python3-tables python3-tables-lib python3-threadpoolctl python3-tk python3-tqdm python3-typing-extensions python3-ufolib2 python3-uharfbuzz python3-unicodedata2 python3-urllib3 python3-webencodings python3-wheel python3-yaml python3-zopfli python3.14 python3.14-dev python3.14-minimal python3.14-tk r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-generics r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-pkg-team-core-architecture r-recommended readline-common sensible-utils sgml-base shared-mime-info sphinx-rtd-theme-common sq sse4.2-support ucf unicode-data unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xkb-data xml-core xz-utils zip zlib1g-dev Suggested packages: binutils-doc gprofng-gui binutils-gold cpp-doc gcc-16-locales cpp-16-doc debian-keyring debian-tag2upload-keyring node-fortawesome-fontawesome-free fonts-roboto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-16-multilib gcc-16-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-16-multilib gdb-x86-64-linux-gnu gfortran-multilib gfortran-doc gfortran-16-multilib gfortran-16-doc libcoarrays-dev apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl liblapack-doc libc-devtools glibc-doc git bzr libfftw3-bin libfftw3-dev rng-tools gdbm-l10n low-memory-monitor libiodbc2-dev libmariadb-dev-compat gnutls-bin gpm gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libhwloc-contrib-plugins icu-doc liblcms2-utils libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libstdc++-16-doc tcl8.6 tk8.6 libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools make-doc man-browser libjs-mathjax-doc npm opencl-icd ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl debhelper python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 python3-igraph raxml samtools t-coffee wise python-bottleneck-doc python-charset-normalizer-doc python-cvxopt-doc python-cycler-doc python3-genshi python-jinja2-doc python-joblib-doc llvmlite-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 gir1.2-gtk-4.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt6 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python3-pyarrow nvidia-cuda-toolkit python-numpy-doc python-openpyxl-doc python-pandas-doc python-patsy-doc python-pil-doc python3-paramiko python3-xxhash python-pygments-doc ttf-bitstream-vera python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-sklearn-doc python-statsmodels-doc python-sympy-doc texlive-fonts-extra python3-netcdf4 python-tables-doc vitables blt tix python-typing-extensions-doc python3-setuptools python3.14-venv python3.14-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-latex-recommended texinfo www-browser sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core Recommended packages: python3-biopython The following NEW packages will be installed: alacritty binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 bzip2-doc ca-certificates cnvkit cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-lato fonts-lyx fonts-roboto-slab fonts-urw-base35 g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-16 gfortran-16-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools isa-support isympy-common isympy3 javascript-common krb5-locales libabsl20260526 libada-url0-3 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libamd3 libaom3 libasan8 libatomic1 libauthen-sasl-perl libavif16 libbinutils libblas-dev libblas3 libblosc1 libblosc2-7 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcamd3 libcares2 libcc1-0 libccolamd3 libcholmod5 libclone-perl libcolamd3 libcom-err2 libcrypt-urandom-perl libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdav1d7 libdbus-1-3 libdeflate-dev libdeflate0 libdisplay-info3 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libdsdp-5.8t64 libedit2 libelf1t64 libencode-locale-perl libexpat1 libexpat1-dev libfakeroot libffi8 libfftw3-double3 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgbm1 libgcc-16-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran-16-dev libgfortran5 libgl1 libgl1-mesa-dri libglib2.0-0t64 libglib2.0-data libglpk40 libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgraphite2-3 libgsl28 libgslcblas0 libgssapi-krb5-2 libharfbuzz-subset0 libharfbuzz0b libhdf5-320 libhdr-histogram6 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libice6 libicu-dev libicu78 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllhttp9.4 libllvm21 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncbi-vdb3 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnode137 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.42 libpixman-1-0 libpkgconf7 libpng-dev libpng-tools libpng16-16t64 libproc2-1 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.14 libpython3.14-dev libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.8 libreadline-dev libreadline8t64 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe3 libsharpyuv0 libsimdjson33 libsimdutf35 libskia146 libsm6 libsnappy1v5 libsqlite3-0 libssh2-1t64 libstdc++-16-dev libsuitesparseconfig7 libsvtav1enc4 libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libumfpack6 libunistring5 liburi-perl libuv1t64 libvulkan1 libwayland-client0 libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2-16 libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 libze1 libzopfli1 libzstd-dev linux-libc-dev linux-sysctl-defaults luit make manpages manpages-dev media-types mesa-libgallium mesa-vulkan-drivers ncbi-blast+ ncbi-data ncbi-vdb-data ncurses-term netbase node-acorn node-balanced-match node-brace-expansion node-commander node-corepack node-debug node-llhttp node-lru-cache node-mathjax-full node-minimatch node-mj-context-menu node-ms node-semver node-speech-rule-engine node-undici node-xmldom node-xtend nodejs nodejs-doc numba-doc ocl-icd-libopencl1 openssl patch pci.ids perl perl-modules-5.42 perl-openssl-defaults pkgconf pkgconf-bin procps psmisc publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-attr python3-babel python3-bioframe python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-colorama python3-contourpy python3-cpuinfo python3-cssselect python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-et-xmlfile python3-fonttools python3-freetype python3-html5lib python3-idna python3-iniconfig python3-jinja2 python3-joblib python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-narwhals python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-patsy python3-pil python3-pil.imagetk python3-pip python3-platformdirs python3-pluggy python3-pooch python3-psutil python3-pyfaidx python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-skia-pathops python3-sklearn python3-sklearn-lib python3-soupsieve python3-statsmodels python3-statsmodels-lib python3-sympy python3-tables python3-tables-lib python3-threadpoolctl python3-tk python3-tqdm python3-typing-extensions python3-ufolib2 python3-uharfbuzz python3-unicodedata2 python3-urllib3 python3-webencodings python3-wheel python3-yaml python3-zopfli python3.14 python3.14-dev python3.14-minimal python3.14-tk r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-generics r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-pkg-team-core-architecture r-recommended readline-common sensible-utils sgml-base shared-mime-info sphinx-rtd-theme-common sq sse4.2-support ucf unicode-data unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xkb-data xml-core xz-utils zip zlib1g-dev 0 upgraded, 540 newly installed, 0 to remove and 0 not upgraded. Need to get 604 MB of archives. After this operation, 2431 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:3 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-10+b1 [15.1 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libpython3.14-minimal amd64 3.14.8-1 [902 kB] Get:5 http://deb.debian.org/debian forky/main amd64 python3.14-minimal amd64 3.14.8-1 [2715 kB] Get:6 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:7 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get:8 http://deb.debian.org/debian forky/main amd64 netbase all 6.6 [10.3 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:11 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-4 [74.8 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libpython3.14-stdlib amd64 3.14.8-1 [2367 kB] Get:15 http://deb.debian.org/debian forky/main amd64 python3.14 amd64 3.14.8-1 [874 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:17 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:18 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-4+b1 [138 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:21 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:22 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.4.6+ds-4+b1 [5140 kB] Get:23 http://deb.debian.org/debian forky/main amd64 isa-support amd64 34 [14.0 kB] Get:24 http://deb.debian.org/debian forky/main amd64 sse4.2-support amd64 34 [3720 B] Get:25 http://deb.debian.org/debian forky/main amd64 linux-sysctl-defaults all 4.17 [5248 B] Get:26 http://deb.debian.org/debian forky/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:27 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:28 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:29 http://deb.debian.org/debian forky/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Get:30 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:31 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20260816 [134 kB] Get:32 http://deb.debian.org/debian forky/main amd64 krb5-locales all 1.22.1-3 [99.0 kB] Get:33 http://deb.debian.org/debian forky/main amd64 manpages all 6.19-3 [1385 kB] Get:34 http://deb.debian.org/debian forky/main amd64 ncurses-term all 6.6+20260608-2 [526 kB] Get:35 http://deb.debian.org/debian forky/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:39 http://deb.debian.org/debian forky/main amd64 perl amd64 5.42.3-1 [266 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:41 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:42 http://deb.debian.org/debian forky/main amd64 ucf all 3.0056 [47.1 kB] Get:43 http://deb.debian.org/debian forky/main amd64 xz-utils amd64 5.8.4-1 [761 kB] Get:44 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:45 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.59-1 [293 kB] Get:46 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.14.3+dfsg-2 [492 kB] Get:47 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:48 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:49 http://deb.debian.org/debian forky/main amd64 libfontenc1 amd64 1:1.1.8-1+b3 [23.4 kB] Get:50 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get:51 http://deb.debian.org/debian forky/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:52 http://deb.debian.org/debian forky/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:53 http://deb.debian.org/debian forky/main amd64 fonts-urw-base35 all 20200910-9 [10.8 MB] Get:54 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:55 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libwayland-client0 amd64 1.26.0-1 [29.4 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libwayland-egl1 amd64 1.26.0-1 [5688 B] Get:58 http://deb.debian.org/debian forky/main amd64 xkb-data all 2.48-1 [841 kB] Get:59 http://deb.debian.org/debian forky/main amd64 libxkbcommon0 amd64 1.13.1-1 [148 kB] Get:60 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:62 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:63 http://deb.debian.org/debian forky/main amd64 libxcb-xkb1 amd64 1.17.0-2+b2 [130 kB] Get:64 http://deb.debian.org/debian forky/main amd64 libxkbcommon-x11-0 amd64 1.13.1-1 [21.0 kB] Get:65 http://deb.debian.org/debian forky/main amd64 alacritty amd64 0.17.0-2 [2430 kB] Get:66 http://deb.debian.org/debian forky/main amd64 libsframe3 amd64 2.47-6 [86.2 kB] Get:67 http://deb.debian.org/debian forky/main amd64 binutils-common amd64 2.47-6 [2686 kB] Get:68 http://deb.debian.org/debian forky/main amd64 libbinutils amd64 2.47-6 [562 kB] Get:69 http://deb.debian.org/debian forky/main amd64 libgprofng0 amd64 2.47-6 [846 kB] Get:70 http://deb.debian.org/debian forky/main amd64 libctf-nobfd0 amd64 2.47-6 [166 kB] Get:71 http://deb.debian.org/debian forky/main amd64 libctf0 amd64 2.47-6 [98.2 kB] Get:72 http://deb.debian.org/debian forky/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:73 http://deb.debian.org/debian forky/main amd64 binutils-x86-64-linux-gnu amd64 2.47-6 [1132 kB] Get:74 http://deb.debian.org/debian forky/main amd64 binutils amd64 2.47-6 [288 kB] Get:75 http://deb.debian.org/debian forky/main amd64 libc-dev-bin amd64 2.43-7 [39.7 kB] Get:76 http://deb.debian.org/debian forky/main amd64 linux-libc-dev all 7.2.9-1 [2012 kB] Get:77 http://deb.debian.org/debian forky/main amd64 libc6-dev amd64 2.43-7 [2069 kB] Get:78 http://deb.debian.org/debian forky/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:79 http://deb.debian.org/debian forky/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:80 http://deb.debian.org/debian forky/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:81 http://deb.debian.org/debian forky/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-3 [13.7 MB] Get:82 http://deb.debian.org/debian forky/main amd64 cpp-16 amd64 16.2.0-3 [1272 B] Get:83 http://deb.debian.org/debian forky/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:84 http://deb.debian.org/debian forky/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:85 http://deb.debian.org/debian forky/main amd64 libcc1-0 amd64 16.2.0-3 [46.1 kB] Get:86 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:87 http://deb.debian.org/debian forky/main amd64 libitm1 amd64 16.2.0-3 [26.9 kB] Get:88 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 16.2.0-3 [10.4 kB] Get:89 http://deb.debian.org/debian forky/main amd64 libasan8 amd64 16.2.0-3 [2888 kB] Get:90 http://deb.debian.org/debian forky/main amd64 liblsan0 amd64 16.2.0-3 [1281 kB] Get:91 http://deb.debian.org/debian forky/main amd64 libtsan2 amd64 16.2.0-3 [2574 kB] Get:92 http://deb.debian.org/debian forky/main amd64 libubsan1 amd64 16.2.0-3 [1136 kB] Get:93 http://deb.debian.org/debian forky/main amd64 libhwasan0 amd64 16.2.0-3 [1580 kB] Get:94 http://deb.debian.org/debian forky/main amd64 libquadmath0 amd64 16.2.0-3 [148 kB] Get:95 http://deb.debian.org/debian forky/main amd64 libgcc-16-dev amd64 16.2.0-3 [2782 kB] Get:96 http://deb.debian.org/debian forky/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-3 [26.6 MB] Get:97 http://deb.debian.org/debian forky/main amd64 gcc-16 amd64 16.2.0-3 [538 kB] Get:98 http://deb.debian.org/debian forky/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:99 http://deb.debian.org/debian forky/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:100 http://deb.debian.org/debian forky/main amd64 libstdc++-16-dev amd64 16.2.0-3 [2755 kB] Get:101 http://deb.debian.org/debian forky/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-3 [15.1 MB] Get:102 http://deb.debian.org/debian forky/main amd64 g++-16 amd64 16.2.0-3 [35.4 kB] Get:103 http://deb.debian.org/debian forky/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:104 http://deb.debian.org/debian forky/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:105 http://deb.debian.org/debian forky/main amd64 make amd64 4.4.1-3 [463 kB] Get:106 http://deb.debian.org/debian forky/main amd64 libdpkg-perl all 1.23.11 [650 kB] Get:107 http://deb.debian.org/debian forky/main amd64 patch amd64 2.8-2 [134 kB] Get:108 http://deb.debian.org/debian forky/main amd64 dpkg-dev all 1.23.11 [1005 kB] Get:109 http://deb.debian.org/debian forky/main amd64 build-essential amd64 12.12 [4624 B] Get:110 http://deb.debian.org/debian forky/main amd64 bzip2-doc all 1.0.8-6 [505 kB] Get:111 http://deb.debian.org/debian forky/main amd64 fonts-lyx all 2.5.3-1 [190 kB] Get:112 http://deb.debian.org/debian forky/main amd64 python-matplotlib-data all 3.10.9+dfsg1-1 [2734 kB] Get:113 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:114 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.14.1-1 [1923 kB] Get:115 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.4-1 [583 kB] Get:116 http://deb.debian.org/debian forky/main amd64 libabsl20260526 amd64 20260526.0-2+b1 [584 kB] Get:117 http://deb.debian.org/debian forky/main amd64 libgav1-2 amd64 0.20.0-2+b2 [372 kB] Get:118 http://deb.debian.org/debian forky/main amd64 librav1e0.8 amd64 0.8.1-12 [970 kB] Get:119 http://deb.debian.org/debian forky/main amd64 libsvtav1enc4 amd64 4.1.0+dfsg-1 [2414 kB] Get:120 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:121 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1971.20260904-2 [187 kB] Get:122 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.4.2-1 [147 kB] Get:123 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.1-1+b2 [255 kB] Get:124 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:125 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.4-1.1 [205 kB] Get:126 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:127 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.90.0-1 [1618 kB] Get:128 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:129 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:130 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.5-1 [13.6 kB] Get:131 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:132 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:133 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:134 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.6.0-0.1 [116 kB] Get:135 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:136 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:137 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.6.0-0.1 [114 kB] Get:138 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.6.0-0.1 [127 kB] Get:139 http://deb.debian.org/debian forky/main amd64 python3-pil amd64 12.3.0-1+b1 [555 kB] Get:140 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:141 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:142 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:143 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:144 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:145 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:146 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:147 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:148 http://deb.debian.org/debian forky/main amd64 python3.14-tk amd64 3.14.8-1 [108 kB] Get:149 http://deb.debian.org/debian forky/main amd64 python3-tk amd64 3.14.7-3 [8472 B] Get:150 http://deb.debian.org/debian forky/main amd64 python3-pil.imagetk amd64 12.3.0-1+b1 [83.6 kB] Get:151 http://deb.debian.org/debian forky/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:152 http://deb.debian.org/debian forky/main amd64 python3-contourpy amd64 1.3.3-2+b1 [228 kB] Get:153 http://deb.debian.org/debian forky/main amd64 python3-cycler all 0.12.1-3 [9112 B] Get:154 http://deb.debian.org/debian forky/main amd64 python3-brotli amd64 1.2.0-4+b1 [317 kB] Get:155 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:156 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:157 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.12.4-2 [936 kB] Get:158 http://deb.debian.org/debian forky/main amd64 libxslt1.1 amd64 1.1.45-0.1 [158 kB] Get:159 http://deb.debian.org/debian forky/main amd64 python3-lxml amd64 6.1.3-1 [1527 kB] Get:160 http://deb.debian.org/debian forky/main amd64 python3-lz4 amd64 4.4.5+dfsg-1+b1 [26.1 kB] Get:161 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:162 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:163 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.17.1-5+b1 [16.0 MB] Get:164 http://deb.debian.org/debian forky/main amd64 python3-mpmath all 1.4.1-4 [448 kB] Get:165 http://deb.debian.org/debian forky/main amd64 python3-sympy all 1.14.0-5 [4227 kB] Get:166 http://deb.debian.org/debian forky/main amd64 python3-attr all 26.1.0-1 [72.2 kB] Get:167 http://deb.debian.org/debian forky/main amd64 python3-ufolib2 all 0.18.1+dfsg1-2 [32.3 kB] Get:168 http://deb.debian.org/debian forky/main amd64 libharfbuzz-subset0 amd64 12.3.2-2+b2 [574 kB] Get:169 http://deb.debian.org/debian forky/main amd64 python3-uharfbuzz amd64 0.53.3-1+b1 [219 kB] Get:170 http://deb.debian.org/debian forky/main amd64 python3-unicodedata2 amd64 17.0.1+ds-1+b1 [325 kB] Get:171 http://deb.debian.org/debian forky/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get:172 http://deb.debian.org/debian forky/main amd64 python3-zopfli amd64 0.4.3-2 [10.8 kB] Get:173 http://deb.debian.org/debian forky/main amd64 unicode-data all 17.0.0-2 [9354 kB] Get:174 http://deb.debian.org/debian forky/main amd64 python3-fonttools amd64 4.62.1-7+b1 [1479 kB] Get:175 http://deb.debian.org/debian forky/main amd64 python3-kiwisolver amd64 1.5.1-1 [65.4 kB] Get:176 http://deb.debian.org/debian forky/main amd64 python3-packaging all 26.2-2 [84.2 kB] Get:177 http://deb.debian.org/debian forky/main amd64 python3-matplotlib amd64 3.10.9+dfsg1-1+b1 [22.6 MB] Get:178 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2026.4-1 [34.5 kB] Get:179 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-5 [3919 kB] Get:180 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-5 [2929 kB] Get:181 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2026.7.22+ds-1 [9928 B] Get:182 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.7-2+b1 [190 kB] Get:183 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.20-1 [45.8 kB] Get:184 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.8.0-1 [125 kB] Get:185 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:186 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:187 http://deb.debian.org/debian forky/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:188 http://deb.debian.org/debian forky/main amd64 python3-yaml amd64 6.0.3-1+b1 [138 kB] Get:189 http://deb.debian.org/debian forky/main amd64 python3-bioframe all 0.8.0-2 [100 kB] Get:190 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:191 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:192 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:193 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:194 http://deb.debian.org/debian forky/main amd64 python3-cairo amd64 1.29.1-1 [111 kB] Get:195 http://deb.debian.org/debian forky/main amd64 python3-freetype all 2.5.1-3 [88.9 kB] Get:196 http://deb.debian.org/debian forky/main amd64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get:197 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-extra all 2.37-9 [1791 kB] Get:198 http://deb.debian.org/debian forky/main amd64 python3-reportlab all 5.0.0-4 [823 kB] Get:199 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:200 http://deb.debian.org/debian forky/main amd64 xml-core all 0.21 [19.0 kB] Get:201 http://deb.debian.org/debian forky/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:202 http://deb.debian.org/debian forky/main amd64 python3-biopython amd64 1.88+dfsg-2+b1 [1619 kB] Get:203 http://deb.debian.org/debian forky/main amd64 python3-pyfaidx all 0.8.1.3-2 [29.1 kB] Get:204 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:205 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:206 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:207 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:208 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:209 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:210 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:211 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:212 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.4-1+b2 [19.5 kB] Get:213 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:214 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:215 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:216 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:217 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:218 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:219 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:220 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:221 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:222 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:223 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:224 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls amd64 8.22.0-1 [457 kB] Get:225 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.22.0-1 [17.8 kB] Get:226 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.7-1 [102 kB] Get:227 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.22.1+ds2-1+b2 [475 kB] Get:228 http://deb.debian.org/debian forky/main amd64 python3-pysam amd64 0.23.3+ds-2+b2 [3742 kB] Get:229 http://deb.debian.org/debian forky/main amd64 python3-sklearn-lib amd64 1.9.0+dfsg-1+b1 [2683 kB] Get:230 http://deb.debian.org/debian forky/main amd64 python3-joblib all 1.5.3-2 [222 kB] Get:231 http://deb.debian.org/debian forky/main amd64 python3-narwhals all 2.26.0-1 [259 kB] Get:232 http://deb.debian.org/debian forky/main amd64 python3-threadpoolctl all 3.7.0-2 [37.1 kB] Get:233 http://deb.debian.org/debian forky/main amd64 python3-sklearn all 1.9.0+dfsg-1 [2728 kB] Get:234 http://deb.debian.org/debian forky/main amd64 python3-patsy all 1.0.3-1 [172 kB] Get:235 http://deb.debian.org/debian forky/main amd64 python3-statsmodels-lib amd64 0.14.6+dfsg-3+b1 [1504 kB] Get:236 http://deb.debian.org/debian forky/main amd64 python3-statsmodels all 0.14.6+dfsg-3 [4822 kB] Get:237 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-16 [239 kB] Get:238 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-31 [176 kB] Get:239 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:240 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:241 http://deb.debian.org/debian forky/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:242 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:243 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.22.0-1 [462 kB] Get:244 http://deb.debian.org/debian forky/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:245 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:246 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:247 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:248 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:249 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.58.2-1 [233 kB] Get:250 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.58.2-1 [56.0 kB] Get:251 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.58.2-1 [35.3 kB] Get:252 http://deb.debian.org/debian forky/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:253 http://deb.debian.org/debian forky/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:254 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:255 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:256 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:257 http://deb.debian.org/debian forky/main amd64 r-base-core amd64 4.6.1-6 [28.4 MB] Get:258 http://deb.debian.org/debian forky/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:259 http://deb.debian.org/debian forky/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:260 http://deb.debian.org/debian forky/main amd64 r-bioc-biocgenerics all 0.58.1-2 [649 kB] Get:261 http://deb.debian.org/debian forky/main amd64 r-bioc-dnacopy amd64 1.86.0-1 [498 kB] Get:262 http://deb.debian.org/debian forky/main amd64 cnvkit all 0.9.14-1 [22.8 MB] Get:263 http://deb.debian.org/debian forky/main amd64 libfakeroot amd64 2.1.4-1 [30.9 kB] Get:264 http://deb.debian.org/debian forky/main amd64 fakeroot amd64 2.1.4-1 [75.6 kB] Get:265 http://deb.debian.org/debian forky/main amd64 fonts-font-awesome-legacy all 6-3 [1547 kB] Get:266 http://deb.debian.org/debian forky/main amd64 fonts-font-awesome all 7.3.0+dfsg-1 [677 kB] Get:267 http://deb.debian.org/debian forky/main amd64 fonts-roboto-slab all 2.002+20231012+ds-1 [1159 kB] Get:268 http://deb.debian.org/debian forky/main amd64 libgfortran-16-dev amd64 16.2.0-3 [921 kB] Get:269 http://deb.debian.org/debian forky/main amd64 gfortran-16-x86-64-linux-gnu amd64 16.2.0-3 [14.5 MB] Get:270 http://deb.debian.org/debian forky/main amd64 gfortran-16 amd64 16.2.0-3 [16.5 kB] Get:271 http://deb.debian.org/debian forky/main amd64 gfortran-x86-64-linux-gnu amd64 4:16.1.0-3 [1276 B] Get:272 http://deb.debian.org/debian forky/main amd64 gfortran amd64 4:16.1.0-3 [1436 B] Get:273 http://deb.debian.org/debian forky/main amd64 icu-devtools amd64 78.3-2 [212 kB] Get:274 http://deb.debian.org/debian forky/main amd64 isympy-common all 1.14.0-5 [233 kB] Get:275 http://deb.debian.org/debian forky/main amd64 isympy3 all 1.14.0-5 [5496 B] Get:276 http://deb.debian.org/debian forky/main amd64 javascript-common all 12+nmu1 [4864 B] Get:277 http://deb.debian.org/debian forky/main amd64 libsimdutf35 amd64 9.1.2-1 [149 kB] Get:278 http://deb.debian.org/debian forky/main amd64 libada-url0-3 amd64 3.4.4-1+b1 [217 kB] Get:279 http://deb.debian.org/debian forky/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:280 http://deb.debian.org/debian forky/main amd64 libalgorithm-diff-xs-perl amd64 0.04-9+b1 [11.4 kB] Get:281 http://deb.debian.org/debian forky/main amd64 libalgorithm-merge-perl all 0.08-5 [11.8 kB] Get:282 http://deb.debian.org/debian forky/main amd64 libsuitesparseconfig7 amd64 1:7.14.1+dfsg-1 [32.8 kB] Get:283 http://deb.debian.org/debian forky/main amd64 libamd3 amd64 1:7.14.1+dfsg-1 [49.9 kB] Get:284 http://deb.debian.org/debian forky/main amd64 libcrypt-urandom-perl amd64 0.55-1+b1 [15.9 kB] Get:285 http://deb.debian.org/debian forky/main amd64 libauthen-sasl-perl all 2.2000-2 [50.1 kB] Get:286 http://deb.debian.org/debian forky/main amd64 libblas-dev amd64 3.12.1-8 [219 kB] Get:287 http://deb.debian.org/debian forky/main amd64 libsnappy1v5 amd64 1.3.1-3 [32.1 kB] Get:288 http://deb.debian.org/debian forky/main amd64 libblosc1 amd64 1.21.5+ds-2+b2 [48.0 kB] Get:289 http://deb.debian.org/debian forky/main amd64 libblosc2-7 amd64 2.23.1+ds-2 [201 kB] Get:290 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6+b2 [33.6 kB] Get:291 http://deb.debian.org/debian forky/main amd64 libcamd3 amd64 1:7.14.1+dfsg-1 [46.9 kB] Get:292 http://deb.debian.org/debian forky/main amd64 libcares2 amd64 1.34.8-1 [100 kB] Get:293 http://deb.debian.org/debian forky/main amd64 libccolamd3 amd64 1:7.14.1+dfsg-1 [49.2 kB] Get:294 http://deb.debian.org/debian forky/main amd64 libcolamd3 amd64 1:7.14.1+dfsg-1 [41.9 kB] Get:295 http://deb.debian.org/debian forky/main amd64 libcholmod5 amd64 1:7.14.1+dfsg-1 [713 kB] Get:296 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.50-1+b2 [21.6 kB] Get:297 http://deb.debian.org/debian forky/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:298 http://deb.debian.org/debian forky/main amd64 libdbus-1-3 amd64 1.16.2-8 [184 kB] Get:299 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.25-1 [56.7 kB] Get:300 http://deb.debian.org/debian forky/main amd64 libdisplay-info3 amd64 0.3.0-1+b1 [78.8 kB] Get:301 http://deb.debian.org/debian forky/main amd64 libdrm-common all 2.4.134-3 [7860 B] Get:302 http://deb.debian.org/debian forky/main amd64 libdrm2 amd64 2.4.134-3 [38.5 kB] Get:303 http://deb.debian.org/debian forky/main amd64 libdrm-amdgpu1 amd64 2.4.134-3 [23.3 kB] Get:304 http://deb.debian.org/debian forky/main amd64 pci.ids all 0.0~2026.09.23-1 [287 kB] Get:305 http://deb.debian.org/debian forky/main amd64 libpciaccess0 amd64 0.19-2 [18.5 kB] Get:306 http://deb.debian.org/debian forky/main amd64 libdrm-intel1 amd64 2.4.134-3 [64.2 kB] Get:307 http://deb.debian.org/debian forky/main amd64 libdsdp-5.8t64 amd64 5.8-12 [183 kB] Get:308 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:309 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:310 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:311 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.9.0-1 [191 kB] Get:312 http://deb.debian.org/debian forky/main amd64 libfftw3-double3 amd64 3.3.11-1 [713 kB] Get:313 http://deb.debian.org/debian forky/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:314 http://deb.debian.org/debian forky/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:315 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.37-1 [113 kB] Get:316 http://deb.debian.org/debian forky/main amd64 libfile-desktopentry-perl all 0.23-1 [17.4 kB] Get:317 http://deb.debian.org/debian forky/main amd64 libfile-fcntllock-perl amd64 0.22-4+b5 [31.5 kB] Get:318 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3500-1 [64.2 kB] Get:319 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.08-1 [12.1 kB] Get:320 http://deb.debian.org/debian forky/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:321 http://deb.debian.org/debian forky/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:322 http://deb.debian.org/debian forky/main amd64 libfile-mimeinfo-perl all 0.37-1 [44.7 kB] Get:323 http://deb.debian.org/debian forky/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:324 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:325 http://deb.debian.org/debian forky/main amd64 libllvm21 amd64 1:21.1.8-13 [28.3 MB] Get:326 http://deb.debian.org/debian forky/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:327 http://deb.debian.org/debian forky/main amd64 libsensors5 amd64 1:3.6.2-2+b2 [37.2 kB] Get:328 http://deb.debian.org/debian forky/main amd64 libx11-xcb1 amd64 2:1.8.13-1 [250 kB] Get:329 http://deb.debian.org/debian forky/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b2 [107 kB] Get:330 http://deb.debian.org/debian forky/main amd64 libxcb-present0 amd64 1.17.0-2+b2 [106 kB] Get:331 http://deb.debian.org/debian forky/main amd64 libxcb-randr0 amd64 1.17.0-2+b2 [117 kB] Get:332 http://deb.debian.org/debian forky/main amd64 libxcb-sync1 amd64 1.17.0-2+b2 [109 kB] Get:333 http://deb.debian.org/debian forky/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b2 [109 kB] Get:334 http://deb.debian.org/debian forky/main amd64 libxshmfence1 amd64 1.3.3-1+b2 [11.2 kB] Get:335 http://deb.debian.org/debian forky/main amd64 mesa-libgallium amd64 26.1.6-1 [11.7 MB] Get:336 http://deb.debian.org/debian forky/main amd64 libgbm1 amd64 26.1.6-1 [55.5 kB] Get:337 http://deb.debian.org/debian forky/main amd64 libglvnd0 amd64 1.7.0-3+b1 [54.3 kB] Get:338 http://deb.debian.org/debian forky/main amd64 libvulkan1 amd64 1.4.363.0-1 [173 kB] Get:339 http://deb.debian.org/debian forky/main amd64 libgl1-mesa-dri amd64 26.1.6-1 [45.1 kB] Get:340 http://deb.debian.org/debian forky/main amd64 libxcb-glx0 amd64 1.17.0-2+b2 [122 kB] Get:341 http://deb.debian.org/debian forky/main amd64 libxxf86vm1 amd64 1:1.1.4-2+b1 [20.2 kB] Get:342 http://deb.debian.org/debian forky/main amd64 libglx-mesa0 amd64 26.1.6-1 [130 kB] Get:343 http://deb.debian.org/debian forky/main amd64 libglx0 amd64 1.7.0-3+b1 [34.9 kB] Get:344 http://deb.debian.org/debian forky/main amd64 libgl1 amd64 1.7.0-3+b1 [87.1 kB] Get:345 http://deb.debian.org/debian forky/main amd64 libglib2.0-data all 2.90.0-1 [1301 kB] Get:346 http://deb.debian.org/debian forky/main amd64 libltdl7 amd64 2.6.2-2 [427 kB] Get:347 http://deb.debian.org/debian forky/main amd64 libglpk40 amd64 5.0-3 [392 kB] Get:348 http://deb.debian.org/debian forky/main amd64 libgpg-error-l10n all 1.61-5 [119 kB] Get:349 http://deb.debian.org/debian forky/main amd64 libgpm2 amd64 1.20.7-12+b2 [13.9 kB] Get:350 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-6+b1 [131 kB] Get:351 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-6+b1 [1002 kB] Get:352 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:353 http://deb.debian.org/debian forky/main amd64 libhdf5-320 amd64 2.2.0+repack-5 [2177 kB] Get:354 http://deb.debian.org/debian forky/main amd64 libhdr-histogram6 amd64 0.11.8-4+b2 [20.6 kB] Get:355 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:356 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-2+b2 [99.6 kB] Get:357 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:358 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:359 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.04-1 [80.6 kB] Get:360 http://deb.debian.org/debian forky/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:361 http://deb.debian.org/debian forky/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:362 http://deb.debian.org/debian forky/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:363 http://deb.debian.org/debian forky/main amd64 libhttp-cookies-perl all 6.12-2 [19.2 kB] Get:364 http://deb.debian.org/debian forky/main amd64 libhttp-daemon-perl all 6.17-1 [24.6 kB] Get:365 http://deb.debian.org/debian forky/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:366 http://deb.debian.org/debian forky/main amd64 libxnvctrl0 amd64 535.171.04-1+b3 [14.1 kB] Get:367 http://deb.debian.org/debian forky/main amd64 libze1 amd64 1.32.0-1 [648 kB] Get:368 http://deb.debian.org/debian forky/main amd64 ocl-icd-libopencl1 amd64 2.3.4-1+b1 [42.8 kB] Get:369 http://deb.debian.org/debian forky/main amd64 libhwloc15 amd64 2.15.0-2 [178 kB] Get:370 http://deb.debian.org/debian forky/main amd64 libhwloc-plugins amd64 2.15.0-2 [22.4 kB] Get:371 http://deb.debian.org/debian forky/main amd64 libicu-dev amd64 78.3-2 [11.1 MB] Get:372 http://deb.debian.org/debian forky/main amd64 libio-compress-brotli-perl amd64 0.019000-1+b1 [18.9 kB] Get:373 http://deb.debian.org/debian forky/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:374 http://deb.debian.org/debian forky/main amd64 libnet-ssleay-perl amd64 1.96-2 [335 kB] Get:375 http://deb.debian.org/debian forky/main amd64 libio-socket-ssl-perl all 2.099-1 [229 kB] Get:376 http://deb.debian.org/debian forky/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB] Get:377 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:3.1.3-4 [356 kB] Get:378 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:3.1.3-4 [78.8 kB] Get:379 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:380 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 9.1.0-9 [46.3 kB] Get:381 http://deb.debian.org/debian forky/main amd64 liblapack-dev amd64 3.12.1-8 [5230 kB] Get:382 http://deb.debian.org/debian forky/main amd64 libldap-common all 2.6.14+dfsg-2 [29.5 kB] Get:383 http://deb.debian.org/debian forky/main amd64 libllhttp9.4 amd64 9.4.3+~cs12.11.9-2 [30.5 kB] Get:384 http://deb.debian.org/debian forky/main amd64 liblmdb0 amd64 0.9.35-1 [45.8 kB] Get:385 http://deb.debian.org/debian forky/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:386 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:387 http://deb.debian.org/debian forky/main amd64 libwww-robotrules-perl all 6.03-1 [15.8 kB] Get:388 http://deb.debian.org/debian forky/main amd64 libwww-perl all 6.83-1 [186 kB] Get:389 http://deb.debian.org/debian forky/main amd64 liblwp-protocol-https-perl all 6.15-1 [10.7 kB] Get:390 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.4-1 [391 kB] Get:391 http://deb.debian.org/debian forky/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:392 http://deb.debian.org/debian forky/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:393 http://deb.debian.org/debian forky/main amd64 libmailtools-perl all 2.22-1 [88.8 kB] Get:394 http://deb.debian.org/debian forky/main amd64 libmbedcrypto16 amd64 3.6.7-3 [367 kB] Get:395 http://deb.debian.org/debian forky/main amd64 libmbedx509-7 amd64 3.6.7-3 [157 kB] Get:396 http://deb.debian.org/debian forky/main amd64 libmbedtls21 amd64 3.6.7-3 [250 kB] Get:397 http://deb.debian.org/debian forky/main amd64 ncbi-vdb-data all 3.4.1+dfsg-1 [86.1 kB] Get:398 http://deb.debian.org/debian forky/main amd64 libncbi-vdb3 amd64 3.4.1+dfsg-1 [1260 kB] Get:399 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.6+20260608-2 [107 kB] Get:400 http://deb.debian.org/debian forky/main amd64 libncurses-dev amd64 6.6+20260608-2 [356 kB] Get:401 http://deb.debian.org/debian forky/main amd64 libxml-parser-perl amd64 2.47-2+b1 [198 kB] Get:402 http://deb.debian.org/debian forky/main amd64 libxml-twig-perl all 1:3.55-1 [177 kB] Get:403 http://deb.debian.org/debian forky/main amd64 libnet-dbus-perl amd64 1.2.0-2+b4 [169 kB] Get:404 http://deb.debian.org/debian forky/main amd64 libsimdjson33 amd64 4.6.11-1 [82.6 kB] Get:405 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.52.1-4 [158 kB] Get:406 http://deb.debian.org/debian forky/main amd64 node-corepack all 0.35.0-2 [106 kB] Get:407 http://deb.debian.org/debian forky/main amd64 nodejs amd64 24.21.0+dfsg+~cs24.13.4-1 [392 kB] Get:408 http://deb.debian.org/debian forky/main amd64 node-xtend all 4.0.2-3 [3932 B] Get:409 http://deb.debian.org/debian forky/main amd64 node-acorn all 8.17.0+ds+~cs28.27.25-1 [140 kB] Get:410 http://deb.debian.org/debian forky/main amd64 node-balanced-match all 2.0.0-1 [4872 B] Get:411 http://deb.debian.org/debian forky/main amd64 node-brace-expansion all 2.1.7+~1.1.2-1 [10.7 kB] Get:412 http://deb.debian.org/debian forky/main amd64 node-minimatch all 9.0.7-2 [53.0 kB] Get:413 http://deb.debian.org/debian forky/main amd64 node-ms all 2.1.3+~cs0.7.31-3 [5648 B] Get:414 http://deb.debian.org/debian forky/main amd64 node-debug all 4.4.3+~4.1.13-1 [16.3 kB] Get:415 http://deb.debian.org/debian forky/main amd64 node-lru-cache all 11.2.7-7 [64.0 kB] Get:416 http://deb.debian.org/debian forky/main amd64 node-semver all 7.7.4+~cs9.7.4-2 [52.7 kB] Get:417 http://deb.debian.org/debian forky/main amd64 node-llhttp all 9.4.3+~cs12.11.9-2 [158 kB] Get:418 http://deb.debian.org/debian forky/main amd64 node-undici all 8.10.2+dfsg+~cs3.2.2-1 [510 kB] Get:419 http://deb.debian.org/debian forky/main amd64 libnode137 amd64 24.21.0+dfsg+~cs24.13.4-1 [16.4 MB] Get:420 http://deb.debian.org/debian forky/main amd64 libpcre2-16-0 amd64 10.48-3.1 [295 kB] Get:421 http://deb.debian.org/debian forky/main amd64 libpcre2-32-0 amd64 10.48-3.1 [282 kB] Get:422 http://deb.debian.org/debian forky/main amd64 libpcre2-posix3 amd64 10.48-3.1 [67.3 kB] Get:423 http://deb.debian.org/debian forky/main amd64 libpcre2-dev amd64 10.48-3.1 [875 kB] Get:424 http://deb.debian.org/debian forky/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:425 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:426 http://deb.debian.org/debian forky/main amd64 libpng-dev amd64 1.6.59-1 [377 kB] Get:427 http://deb.debian.org/debian forky/main amd64 libpng-tools amd64 1.6.59-1 [132 kB] Get:428 http://deb.debian.org/debian forky/main amd64 libpython3.14 amd64 3.14.8-1 [2528 kB] Get:429 http://deb.debian.org/debian forky/main amd64 libpython3.14-dev amd64 3.14.8-1 [5825 kB] Get:430 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.14.7-3 [8492 B] Get:431 http://deb.debian.org/debian forky/main amd64 libreadline-dev amd64 8.3-4 [163 kB] Get:432 http://deb.debian.org/debian forky/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-11 [64.5 kB] Get:433 http://deb.debian.org/debian forky/main amd64 libskia146 amd64 146.20260602~git.3476902+dfsg-5 [2798 kB] Get:434 http://deb.debian.org/debian forky/main amd64 libtbbbind-2-5 amd64 2023.1.0-3 [13.2 kB] Get:435 http://deb.debian.org/debian forky/main amd64 libtbbmalloc2 amd64 2023.1.0-3 [51.0 kB] Get:436 http://deb.debian.org/debian forky/main amd64 libtbb12 amd64 2023.1.0-3 [101 kB] Get:437 http://deb.debian.org/debian forky/main amd64 libtext-iconv-perl amd64 1.7-9+b1 [14.3 kB] Get:438 http://deb.debian.org/debian forky/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Get:439 http://deb.debian.org/debian forky/main amd64 libtirpc-dev amd64 1.3.7+ds-1 [190 kB] Get:440 http://deb.debian.org/debian forky/main amd64 libumfpack6 amd64 1:7.14.1+dfsg-1 [299 kB] Get:441 http://deb.debian.org/debian forky/main amd64 libx11-protocol-perl all 0.56-9 [120 kB] Get:442 http://deb.debian.org/debian forky/main amd64 libxmu6 amd64 2:1.1.3-4+b1 [59.6 kB] Get:443 http://deb.debian.org/debian forky/main amd64 libxpm4 amd64 1:3.5.19-1 [58.9 kB] Get:444 http://deb.debian.org/debian forky/main amd64 libxaw7 amd64 2:1.0.16-1+b2 [214 kB] Get:445 http://deb.debian.org/debian forky/main amd64 libxcb-shape0 amd64 1.17.0-2+b2 [106 kB] Get:446 http://deb.debian.org/debian forky/main amd64 libxcomposite1 amd64 1:0.4.6-1+b2 [16.6 kB] Get:447 http://deb.debian.org/debian forky/main amd64 libxfixes3 amd64 1:6.0.0-2+b5 [20.3 kB] Get:448 http://deb.debian.org/debian forky/main amd64 libxcursor1 amd64 1:1.2.3-1+b2 [40.3 kB] Get:449 http://deb.debian.org/debian forky/main amd64 libxi6 amd64 2:1.8.3-1 [86.4 kB] Get:450 http://deb.debian.org/debian forky/main amd64 libxinerama1 amd64 2:1.1.4-3+b5 [16.0 kB] Get:451 http://deb.debian.org/debian forky/main amd64 libxkbfile1 amd64 1:1.1.0-1+b5 [76.7 kB] Get:452 http://deb.debian.org/debian forky/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get:453 http://deb.debian.org/debian forky/main amd64 libxmuu1 amd64 2:1.1.3-4+b1 [22.0 kB] Get:454 http://deb.debian.org/debian forky/main amd64 libxrandr2 amd64 2:1.5.4-1+b4 [36.5 kB] Get:455 http://deb.debian.org/debian forky/main amd64 libxtst6 amd64 2:1.2.5-1+b2 [26.2 kB] Get:456 http://deb.debian.org/debian forky/main amd64 libxv1 amd64 2:1.0.13-1+b1 [25.2 kB] Get:457 http://deb.debian.org/debian forky/main amd64 libxxf86dga1 amd64 2:1.1.5-1+b4 [20.9 kB] Get:458 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-4 [371 kB] Get:459 http://deb.debian.org/debian forky/main amd64 luit amd64 2.0.20250912-1 [55.2 kB] Get:460 http://deb.debian.org/debian forky/main amd64 manpages-dev all 6.19-3 [2240 kB] Get:461 http://deb.debian.org/debian forky/main amd64 mesa-vulkan-drivers amd64 26.1.6-1 [20.9 MB] Get:462 http://deb.debian.org/debian forky/main amd64 ncbi-data all 6.1.20170106+dfsg2-7 [3540 kB] Get:463 http://deb.debian.org/debian forky/main amd64 ncbi-blast+ amd64 2.17.0+ds-7 [17.0 MB] Get:464 http://deb.debian.org/debian forky/main amd64 node-commander all 14.0.3-7 [76.8 kB] Get:465 http://deb.debian.org/debian forky/main amd64 node-mj-context-menu all 0.9.1+ds-3 [70.3 kB] Get:466 http://deb.debian.org/debian forky/main amd64 node-xmldom all 0.9.12-1 [93.1 kB] Get:467 http://deb.debian.org/debian forky/main amd64 node-speech-rule-engine all 4.1.4+~0.1.31-2 [564 kB] Get:468 http://deb.debian.org/debian forky/main amd64 node-mathjax-full all 3.2.2+~cs4.2.1-6 [3671 kB] Get:469 http://deb.debian.org/debian forky/main amd64 nodejs-doc all 24.21.0+dfsg+~cs24.13.4-1 [7583 kB] Get:470 http://deb.debian.org/debian forky/main amd64 sphinx-rtd-theme-common all 3.1.0+dfsg-3 [916 kB] Get:471 http://deb.debian.org/debian forky/main amd64 numba-doc all 0.65.1+dfsg-3 [1051 kB] Get:472 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:473 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:474 http://deb.debian.org/debian forky/main amd64 psmisc amd64 23.7-2 [267 kB] Get:475 http://deb.debian.org/debian forky/main amd64 publicsuffix all 20260725.1419-1 [325 kB] Get:476 http://deb.debian.org/debian forky/main amd64 python-babel-localedata all 2.18.0+git2026-08-12-3 [6375 kB] Get:477 http://deb.debian.org/debian forky/main amd64 python-biopython-doc all 1.88+dfsg-2 [18.1 MB] Get:478 http://deb.debian.org/debian forky/main amd64 python-odf-doc all 1.4.2-4 [5344 kB] Get:479 http://deb.debian.org/debian forky/main amd64 python3-legacy-cgi all 2.6.4-3 [16.9 kB] Get:480 http://deb.debian.org/debian forky/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:481 http://deb.debian.org/debian forky/main amd64 python3-odf all 1.4.2-4 [78.4 kB] Get:482 http://deb.debian.org/debian forky/main amd64 python-odf-tools all 1.4.2-4 [28.4 kB] Get:483 http://deb.debian.org/debian forky/main amd64 python-tables-data all 3.11.1-3 [45.9 kB] Get:484 http://deb.debian.org/debian forky/main amd64 python3-babel all 2.18.0+git2026-08-12-3 [120 kB] Get:485 http://deb.debian.org/debian forky/main amd64 python3-bottleneck amd64 1.4.2+ds1-2+b3 [94.8 kB] Get:486 http://deb.debian.org/debian forky/main amd64 python3-soupsieve all 2.8.4-1 [38.7 kB] Get:487 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:488 http://deb.debian.org/debian forky/main amd64 python3-bs4 all 4.15.0-1 [119 kB] Get:489 http://deb.debian.org/debian forky/main amd64 python3-colorama all 0.4.6-5 [35.1 kB] Get:490 http://deb.debian.org/debian forky/main amd64 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Get:491 http://deb.debian.org/debian forky/main amd64 python3-cssselect all 1.5.0-1 [23.4 kB] Get:492 http://deb.debian.org/debian forky/main amd64 python3-cvxopt amd64 1.3.2+dfsg-2+b2 [279 kB] Get:493 http://deb.debian.org/debian forky/main amd64 python3.14-dev amd64 3.14.8-1 [508 kB] Get:494 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.14.7-3 [26.7 kB] Get:495 http://deb.debian.org/debian forky/main amd64 python3-et-xmlfile all 2.0.0-2 [12.9 kB] Get:496 http://deb.debian.org/debian forky/main amd64 python3-webencodings all 0.5.1-6 [11.2 kB] Get:497 http://deb.debian.org/debian forky/main amd64 python3-html5lib all 1.2-5 [87.4 kB] Get:498 http://deb.debian.org/debian forky/main amd64 python3-iniconfig all 2.1.0-2 [7540 B] Get:499 http://deb.debian.org/debian forky/main amd64 python3-markupsafe amd64 3.0.3-2+b1 [13.7 kB] Get:500 http://deb.debian.org/debian forky/main amd64 python3-jinja2 all 3.1.6-4 [106 kB] Get:501 http://deb.debian.org/debian forky/main amd64 python3-llvmlite amd64 0.47.0-0.1 [22.9 MB] Get:502 http://deb.debian.org/debian forky/main amd64 python3-numba amd64 0.65.1+dfsg-3+b1 [1788 kB] Get:503 http://deb.debian.org/debian forky/main amd64 python3-numexpr amd64 2.14.2-1+b1 [142 kB] Get:504 http://deb.debian.org/debian forky/main amd64 python3-olefile all 0.47-1 [39.3 kB] Get:505 http://deb.debian.org/debian forky/main amd64 python3-openpyxl all 3.1.5+dfsg-4 [166 kB] Get:506 http://deb.debian.org/debian forky/main amd64 python3-wheel all 0.47.0-2 [27.0 kB] Get:507 http://deb.debian.org/debian forky/main amd64 python3-pip all 26.1.2+dfsg-1 [1402 kB] Get:508 http://deb.debian.org/debian forky/main amd64 python3-platformdirs all 4.10.0-1 [18.3 kB] Get:509 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-2 [27.2 kB] Get:510 http://deb.debian.org/debian forky/main amd64 python3-pooch all 1.9.0-2 [62.8 kB] Get:511 http://deb.debian.org/debian forky/main amd64 python3-psutil amd64 7.1.0-1 [224 kB] Get:512 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:513 http://deb.debian.org/debian forky/main amd64 python3-pytest all 9.1.1-1 [280 kB] Get:514 http://deb.debian.org/debian forky/main amd64 python3-skia-pathops amd64 0.9.2-2 [141 kB] Get:515 http://deb.debian.org/debian forky/main amd64 python3-tables-lib amd64 3.11.1-3 [494 kB] Get:516 http://deb.debian.org/debian forky/main amd64 python3-tables all 3.11.1-3 [354 kB] Get:517 http://deb.debian.org/debian forky/main amd64 python3-tqdm all 4.70.1-1 [91.3 kB] Get:518 http://deb.debian.org/debian forky/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get:519 http://deb.debian.org/debian forky/main amd64 r-base-dev all 4.6.1-6 [2048 B] Get:520 http://deb.debian.org/debian forky/main amd64 r-cran-boot all 1.3-32-1 [639 kB] Get:521 http://deb.debian.org/debian forky/main amd64 r-cran-mass amd64 7.3-66-1 [1113 kB] Get:522 http://deb.debian.org/debian forky/main amd64 r-cran-class amd64 7.3-24-1 [89.1 kB] Get:523 http://deb.debian.org/debian forky/main amd64 r-cran-cluster amd64 2.1.8.3-1 [585 kB] Get:524 http://deb.debian.org/debian forky/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:525 http://deb.debian.org/debian forky/main amd64 r-cran-foreign amd64 0.8.91-1 [254 kB] Get:526 http://deb.debian.org/debian forky/main amd64 r-cran-kernsmooth amd64 2.23-27-1 [93.4 kB] Get:527 http://deb.debian.org/debian forky/main amd64 r-cran-lattice amd64 0.23-1-1 [1457 kB] Get:528 http://deb.debian.org/debian forky/main amd64 r-cran-matrix amd64 1.7-6-1 [4192 kB] Get:529 http://deb.debian.org/debian forky/main amd64 r-cran-nlme amd64 3.1.171-1 [2330 kB] Get:530 http://deb.debian.org/debian forky/main amd64 r-cran-mgcv amd64 1.9-4-1 [3608 kB] Get:531 http://deb.debian.org/debian forky/main amd64 r-cran-nnet amd64 7.3-21-1 [113 kB] Get:532 http://deb.debian.org/debian forky/main amd64 r-cran-survival amd64 3.8-12-1 [7862 kB] Get:533 http://deb.debian.org/debian forky/main amd64 r-cran-rpart amd64 4.1.27-1 [689 kB] Get:534 http://deb.debian.org/debian forky/main amd64 r-cran-spatial amd64 7.3-19-1 [133 kB] Get:535 http://deb.debian.org/debian forky/main amd64 r-doc-html all 4.6.1-6 [615 kB] Get:536 http://deb.debian.org/debian forky/main amd64 r-recommended all 4.6.1-6 [2576 B] Get:537 http://deb.debian.org/debian forky/main amd64 sq amd64 1.4.1-1 [6510 kB] Get:538 http://deb.debian.org/debian forky/main amd64 x11-utils amd64 7.7+7 [182 kB] Get:539 http://deb.debian.org/debian forky/main amd64 x11-xserver-utils amd64 7.7+11 [163 kB] Get:540 http://deb.debian.org/debian forky/main amd64 xdg-user-dirs amd64 0.20-1 [41.9 kB] Preconfiguring packages ... 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Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libamd3:amd64 (1:7.14.1+dfsg-1) ... Setting up libxpm4:amd64 (1:3.5.19-1) ... Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up libgcc-16-dev:amd64 (16.2.0-3) ... Setting up libpng-tools (1.6.59-1) ... Setting up libcolamd3:amd64 (1:7.14.1+dfsg-1) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libwebpdemux2:amd64 (1.6.0-0.1) ... Setting up libgfortran-16-dev:amd64 (16.2.0-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up libpaper-utils (2.2.5-0.4) ... Setting up libcamd3:amd64 (1:7.14.1+dfsg-1) ... Setting up pkgconf:amd64 (2.5.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-2+b1) ... Setting up libtbbbind-2-5:amd64 (2023.1.0-3) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b3) ... Setting up libthai0:amd64 (0.1.30-3) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up perl (5.42.3-1) ... Setting up libglib2.0-0t64:amd64 (2.90.0-1) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.47-6) ... Setting up libmbedx509-7:amd64 (3.6.7-3) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-2) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libglpk40:amd64 (5.0-3) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b5) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libxml-xpathengine-perl (0.14-2) ... Setting up libllvm21:amd64 (1:21.1.8-13) ... Setting up libio-compress-brotli-perl (0.019000-1+b1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up python-odf-doc (1.4.2-4) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b5) ... Setting up libxkbcommon-x11-0:amd64 (1.13.1-1) ... Setting up libxv1:amd64 (2:1.0.13-1+b1) ... Setting up liblapack-dev:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libio-html-perl (1.004-3) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b4) ... Setting up ucf (3.0056) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libdpkg-perl (1.23.11) ... Setting up libccolamd3:amd64 (1:7.14.1+dfsg-1) ... Setting up libmbedtls21:amd64 (3.6.7-3) ... Setting up libtimedate-perl (2.3500-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libdrm2:amd64 (2.4.134-3) ... Setting up xauth (1:1.1.2-1.1) ... Setting up xml-core (0.21) ... Setting up libc6-dev:amd64 (2.43-7) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up libdsdp-5.8t64 (5.8-12) ... Setting up cpp-16-x86-64-linux-gnu (16.2.0-3) ... Setting up libxss1:amd64 (1:1.2.3-1+b4) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libhdf5-320:amd64 (2.2.0+repack-5) ... Setting up numba-doc (0.65.1+dfsg-3) ... Setting up libsm6:amd64 (2:1.2.6-1+b2) ... Setting up libicu-dev:amd64 (78.3-2) ... Setting up liburi-perl (5.37-1) ... Setting up libx11-protocol-perl (0.56-9) ... Setting up binutils-x86-64-linux-gnu (2.47-6) ... Setting up libdrm-amdgpu1:amd64 (2.4.134-3) ... Setting up libbz2-dev:amd64 (1.0.8-6+b2) ... Setting up libnet-ssleay-perl:amd64 (1.96-2) ... Setting up cpp-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up mesa-vulkan-drivers:amd64 (26.1.6-1) ... Setting up libhttp-date-perl (6.08-1) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libcholmod5:amd64 (1:7.14.1+dfsg-1) ... Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libncurses-dev:amd64 (6.6+20260608-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libtie-ixhash-perl (1.23-4) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpcre2-dev:amd64 (10.48-3.1) ... Setting up libxi6:amd64 (2:1.8.3-1) ... Setting up libfont-afm-perl (1.20-4) ... Setting up libtirpc3t64:amd64 (1.3.7+ds-1) ... Setting up libfile-fcntllock-perl (0.22-4+b5) ... Setting up libpython3.14-stdlib:amd64 (3.14.8-1) ... Setting up libclone-perl:amd64 (0.50-1+b2) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libio-stringy-perl (2.113-2) ... Setting up libxtst6:amd64 (2:1.2.5-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libtk8.6:amd64 (8.6.18-1) ... Setting up libxcursor1:amd64 (1:1.2.3-1+b2) ... Setting up libpango-1.0-0:amd64 (1.58.2-1) ... Setting up libdrm-intel1:amd64 (2.4.134-3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libcrypt-urandom-perl (0.55-1+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up libxxf86dga1:amd64 (2:1.1.5-1+b4) ... Setting up libnet-http-perl (6.24-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up gcc-16-x86-64-linux-gnu (16.2.0-3) ... Setting up libtbb12:amd64 (2023.1.0-3) ... Setting up binutils (2.47-6) ... Setting up libreadline-dev:amd64 (8.3-4) ... Setting up xfonts-utils (1:7.7+7) ... Setting up libhwloc-plugins:amd64 (2.15.0-2) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up dpkg-dev (1.23.11) ... Setting up libtirpc-dev:amd64 (1.3.7+ds-1) ... Setting up libexpat1-dev:amd64 (2.9.0-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:3.1.3-4) ... Setting up libraqm0:amd64 (0.10.5-1) ... Setting up libstdc++-16-dev:amd64 (16.2.0-3) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up gfortran-16-x86-64-linux-gnu (16.2.0-3) ... Setting up g++-16-x86-64-linux-gnu (16.2.0-3) ... Setting up libfile-desktopentry-perl (0.23-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libwww-robotrules-perl (6.03-1) ... Setting up libumfpack6:amd64 (1:7.14.1+dfsg-1) ... Setting up libhtml-parser-perl:amd64 (3.83-2+b2) ... Setting up alacritty (0.17.0-2) ... update-alternatives: using /usr/bin/alacritty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up libpython3.14:amd64 (3.14.8-1) ... Setting up libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Setting up cpp-16 (16.2.0-3) ... Setting up libpython3.14-dev:amd64 (3.14.8-1) ... Setting up python3.14 (3.14.8-1) ... Setting up libpangoft2-1.0-0:amd64 (1.58.2-1) ... Setting up libalgorithm-diff-xs-perl (0.04-9+b1) ... Setting up libio-socket-ssl-perl (2.099-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.58.2-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up libalgorithm-merge-perl (0.08-5) ... Setting up libhttp-message-perl (7.04-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libcurl4-gnutls:amd64 (8.22.0-1) ... Setting up libfile-mimeinfo-perl (0.37-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up mesa-libgallium:amd64 (26.1.6-1) ... Setting up libxmu6:amd64 (2:1.1.3-4+b1) ... Setting up python3.14-tk (3.14.8-1) ... Setting up libpython3-dev:amd64 (3.14.7-3) ... Setting up gcc-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up python3.14-dev (3.14.8-1) ... Setting up libgbm1:amd64 (26.1.6-1) ... Setting up libhttp-cookies-perl (6.12-2) ... Setting up libauthen-sasl-perl (2.2000-2) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libgl1-mesa-dri:amd64 (26.1.6-1) ... Setting up libpng-dev:amd64 (1.6.59-1) ... Setting up libjpeg-dev:amd64 (1:3.1.3-4) ... Setting up libcurl3t64-gnutls:amd64 (8.22.0-1) ... Setting up gcc-16 (16.2.0-3) ... Setting up python3-tk (3.14.7-3) ... Setting up python3 (3.14.7-3) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libxaw7:amd64 (2:1.0.16-1+b2) ... Setting up fonts-urw-base35 (20200910-9) ... Setting up python3-freetype (2.5.1-3) ... Setting up python3-markupsafe (3.0.3-2+b1) ... Setting up gfortran-x86-64-linux-gnu (4:16.1.0-3) ... Setting up python3-webencodings (0.5.1-6) ... Setting up python3-platformdirs (4.10.0-1) ... Setting up python3-psutil (7.1.0-1) ... Setting up python3-zopfli (0.4.3-2) ... Setting up python3-pil:amd64 (12.3.0-1+b1) ... Setting up python3-llvmlite (0.47.0-0.1) ... Setting up python3-decorator (5.3.1-1) ... Setting up python3-jinja2 (3.1.6-4) ... Setting up python3-pygments (2.20.0+dfsg-2) ... Setting up python3-packaging (26.2-2) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.3.2-2) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up python3-certifi (2026.7.22+ds-1) ... Setting up python3-pil.imagetk:amd64 (12.3.0-1+b1) ... Setting up libmailtools-perl (2.22-1) ... Setting up python3-brotli (1.2.0-4+b1) ... Setting up python3-dev (3.14.7-3) ... Setting up python3-cycler (0.12.1-3) ... Setting up r-base-core (4.6.1-6) ... Creating config file /etc/R/Renviron with new version Setting up python3-kiwisolver (1.5.1-1) ... Setting up python3-idna (3.20-1) ... Setting up python3-uharfbuzz (0.53.3-1+b1) ... Setting up python3-typing-extensions (4.16.0-5) ... Setting up r-cran-lattice (0.23-1-1) ... Setting up python3-cpuinfo (9.0.0+git20221119-3) ... Setting up python3-html5lib (1.2-5) ... Setting up python3-numpy (1:2.4.6+ds-4+b1) ... Setting up r-cran-nlme (3.1.171-1) ... Setting up python3-urllib3 (2.8.0-1) ... Setting up python3-pluggy (1.6.0-2) ... Setting up python3-legacy-cgi (2.6.4-3) ... Setting up g++-16 (16.2.0-3) ... Setting up libhttp-daemon-perl (6.17-1) ... Setting up gfortran-16 (16.2.0-3) ... Setting up python3-lxml:amd64 (6.1.3-1) ... Setting up cpp (4:16.1.0-3) ... Setting up r-cran-cluster (2.1.8.3-1) ... Setting up python3-et-xmlfile (2.0.0-2) ... Setting up g++-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libhts3t64:amd64 (1.22.1+ds2-1+b2) ... Setting up r-cran-nnet (7.3-21-1) ... Setting up ncbi-vdb-data (3.4.1+dfsg-1) ... Setting up python3-dateutil (2.9.0-5) ... Setting up python3-contourpy (1.3.3-2+b1) ... Setting up python3-mpmath (1.4.1-4) ... Setting up python3-cssselect (1.5.0-1) ... Setting up python3-soupsieve (2.8.4-1) ... Setting up python3-statsmodels-lib:amd64 (0.14.6+dfsg-3+b1) ... Setting up python3-pyfaidx (0.8.1.3-2) ... Setting up python3-iniconfig (2.1.0-2) ... Setting up python3-sympy (1.14.0-5) ... /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block return p.returncode Setting up python3-attr (26.1.0-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-boot (1.3-32-1) ... Setting up libglx-mesa0:amd64 (26.1.6-1) ... Setting up python3-pysam (0.23.3+ds-2+b2) ... Setting up python3-scipy (1.17.1-5+b1) ... Setting up python3-cairo (1.29.1-1) ... Setting up libglx0:amd64 (1.7.0-3+b1) ... Setting up python3-joblib (1.5.3-2) ... Setting up python3-cvxopt (1.3.2+dfsg-2+b2) ... Setting up python3-babel (2.18.0+git2026-08-12-3) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-colorama (0.4.6-5) ... Setting up python3-lz4 (4.4.5+dfsg-1+b1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.7-2+b1) ... Setting up python3-pytest (9.1.1-1) ... Setting up python3-tables-lib (3.11.1-3) ... Setting up r-cran-generics (0.1.4-1) ... Setting up python3-unicodedata2 (17.0.1+ds-1+b1) ... Setting up r-cran-spatial (7.3-19-1) ... Setting up python3-olefile (0.47-1) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-5) ... Setting up python3-tqdm (4.70.1-1) ... Setting up python3-threadpoolctl (3.7.0-2) ... Setting up python3-narwhals (2.26.0-1) ... Setting up libncbi-vdb3:amd64 (3.4.1+dfsg-1) ... Setting up isympy-common (1.14.0-5) ... Setting up r-cran-mass (7.3-66-1) ... Setting up python3-sklearn-lib:amd64 (1.9.0+dfsg-1+b1) ... Setting up python3-yaml (6.0.3-1+b1) ... Setting up python3-pytz (2026.4-1) ... Setting up r-cran-foreign (0.8.91-1) ... Setting up x11-xserver-utils (7.7+11) ... Setting up python3-numba (0.65.1+dfsg-3+b1) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up python3-wheel (0.47.0-2) ... Setting up python3-bs4 (4.15.0-1) ... Setting up gcc (4:16.1.0-3) ... Setting up ncbi-blast+ (2.17.0+ds-7) ... Setting up python3-patsy (1.0.3-1) ... Setting up libgl1:amd64 (1.7.0-3+b1) ... Setting up python3-pandas (2.3.3+dfsg-5) ... Setting up python3-rlpycairo (0.3.0-4) ... Setting up python3-openpyxl (3.1.5+dfsg-4) ... Setting up isympy3 (1.14.0-5) ... Setting up python3-requests (2.34.2-1) ... Setting up python3-bottleneck (1.4.2+ds1-2+b3) ... Setting up python3-sklearn (1.9.0+dfsg-1) ... Setting up python3-numexpr (2.14.2-1+b1) ... Setting up r-cran-matrix (1.7-6-1) ... Setting up python3-pip (26.1.2+dfsg-1) ... Setting up python3-reportlab (5.0.0-4) ... Setting up r-cran-kernsmooth (2.23-27-1) ... Setting up r-cran-mgcv (1.9-4-1) ... Setting up g++ (4:16.1.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-statsmodels (0.14.6+dfsg-3) ... Setting up x11-utils (7.7+7) ... Setting up build-essential (12.12) ... Setting up python3-odf (1.4.2-4) ... Setting up r-bioc-biocgenerics (0.58.1-2) ... Setting up r-cran-class (7.3-24-1) ... Setting up python-odf-tools (1.4.2-4) ... Setting up r-cran-survival (3.8-12-1) ... Setting up python3-tables (3.11.1-3) ... Setting up gfortran (4:16.1.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libskia146:amd64 (146.20260602~git.3476902+dfsg-5) ... Setting up python3-pooch (1.9.0-2) ... Setting up r-bioc-dnacopy (1.86.0-1) ... Setting up python3-skia-pathops (0.9.2-2) ... Setting up r-base-dev (4.6.1-6) ... Setting up r-cran-rpart (4.1.27-1) ... Setting up r-recommended (4.6.1-6) ... Setting up libwww-perl (6.83-1) ... Setting up python3-fonttools (4.62.1-7+b1) ... Setting up python3-ufolib2 (0.18.1+dfsg1-2) ... Setting up node-acorn (8.17.0+ds+~cs28.27.25-1) ... Setting up node-ms (2.1.3+~cs0.7.31-3) ... Setting up node-semver (7.7.4+~cs9.7.4-2) ... Setting up liblwp-protocol-https-perl (6.15-1) ... Setting up libxml-parser-perl (2.47-2+b1) ... Setting up node-corepack (0.35.0-2) ... Setting up python3-matplotlib (3.10.9+dfsg1-1+b1) ... Setting up python3-bioframe (0.8.0-2) ... Setting up libxml-twig-perl (1:3.55-1) ... Setting up libnet-dbus-perl (1.2.0-2+b4) ... Setting up node-debug (4.4.3+~4.1.13-1) ... Setting up node-llhttp (9.4.3+~cs12.11.9-2) ... Setting up node-undici (8.10.2+dfsg+~cs3.2.2-1) ... Setting up libnode137:amd64 (24.21.0+dfsg+~cs24.13.4-1) ... Setting up nodejs (24.21.0+dfsg+~cs24.13.4-1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up node-speech-rule-engine (4.1.4+~0.1.31-2) ... Setting up node-mathjax-full (3.2.2+~cs4.2.1-6) ... Setting up python-biopython-doc (1.88+dfsg-2) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.88+dfsg-2+b1) ... Setting up cnvkit (0.9.14-1) ... Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', '-y', 'install', 'cnvkit=0.9.14-1'] 2m19.7s INFO: Running scripts post_install 2m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_install_exceptions'] 2m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_install_exceptions'] 2m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'systemd-tmpfiles', '--cat-config'] 2m19.7s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 2m19.7s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'systemd-tmpfiles', '--cat-config'] 2m19.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 2m23.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 2m29.2s DEBUG: No broken symlinks as far as we can find. 2m31.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', '-ac', '--ignore-obsolete'] 2m41.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', '-ac', '--ignore-obsolete'] 2m41.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m41.4s DUMP: 0.17.5+b5 2m41.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m41.4s INFO: Running adequate version 0.17.5+b5 now. 2m41.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'cnvkit'] 2m41.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'cnvkit'] 2m41.6s INFO: Running scripts pre_remove 2m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_exceptions'] 2m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/pre_remove_exceptions'] 2m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m59.5s DUMP: install ok installed alacritty alacritty 0.17.0-2 install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed binutils binutils 2.47-6 install ok installed binutils-common:amd64 binutils-common 2.47-6 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.47-6 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6+b2 install ok installed bzip2-doc bzip2-doc 1.0.8-6 install ok installed ca-certificates ca-certificates 20260816 install ok installed cnvkit cnvkit 0.9.14-1 install ok installed coreutils coreutils 9.10-1 install ok installed cpp cpp 4:16.1.0-3 install ok installed cpp-16 cpp-16 16.2.0-3 install ok installed cpp-16-x86-64-linux-gnu cpp-16-x86-64-linux-gnu 16.2.0-3 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:16.1.0-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed dpkg-dev dpkg-dev 1.23.11 install ok installed fakeroot fakeroot 2.1.4-1 install ok installed findutils findutils 4.11.0-2 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed fonts-font-awesome fonts-font-awesome 7.3.0+dfsg-1 install ok installed fonts-font-awesome-legacy fonts-font-awesome-legacy 6-3 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-lyx fonts-lyx 2.5.3-1 install ok installed fonts-roboto-slab fonts-roboto-slab 2.002+20231012+ds-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-9 install ok installed g++ g++ 4:16.1.0-3 install ok installed g++-16 g++-16 16.2.0-3 install ok installed g++-16-x86-64-linux-gnu g++-16-x86-64-linux-gnu 16.2.0-3 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:16.1.0-3 install ok installed gcc gcc 4:16.1.0-3 install ok installed gcc-16 gcc-16 16.2.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu 16.2.0-3 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:16.1.0-3 install ok installed gfortran gfortran 4:16.1.0-3 install ok installed gfortran-16 gfortran-16 16.2.0-3 install ok installed gfortran-16-x86-64-linux-gnu gfortran-16-x86-64-linux-gnu 16.2.0-3 install ok installed gfortran-x86-64-linux-gnu gfortran-x86-64-linux-gnu 4:16.1.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed icu-devtools icu-devtools 78.3-2 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed isa-support:amd64 isa-support 34 install ok installed isympy-common isympy-common 1.14.0-5 install ok installed isympy3 isympy3 1.14.0-5 install ok installed javascript-common javascript-common 12+nmu1 install ok installed krb5-locales krb5-locales 1.22.1-3 install ok installed libabsl20260526:amd64 libabsl20260526 20260526.0-2+b1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libada-url0-3:amd64 libada-url0-3 3.4.4-1+b1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-9+b1 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-5 install ok installed libamd3:amd64 libamd3 1:7.14.1+dfsg-1 install ok installed libaom3:amd64 libaom3 3.14.1-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libasan8:amd64 libasan8 16.2.0-3 install ok installed libatomic1:amd64 libatomic1 16.2.0-3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.2000-2 install ok installed libavif16:amd64 libavif16 1.4.2-1 install ok installed libbinutils:amd64 libbinutils 2.47-6 install ok installed libblas-dev:amd64 libblas-dev 3.12.1-8 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-2+b2 install ok installed libblosc2-7:amd64 libblosc2-7 2.23.1+ds-2 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4+b1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-dev-bin libc-dev-bin 2.43-7 install ok installed 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libctf0:amd64 libctf0 2.47-6 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.22.0-1 install ok installed libcurl4-gnutls:amd64 libcurl4-gnutls 8.22.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.22.0-1 install ok installed libdata-dump-perl libdata-dump-perl 1.25-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-2 install ok installed libdav1d7:amd64 libdav1d7 1.5.4-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.16.2-8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate-dev:amd64 libdeflate-dev 1.25-1 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libdisplay-info3:amd64 libdisplay-info3 0.3.0-1+b1 install ok installed libdpkg-perl libdpkg-perl 1.23.11 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.134-3 install ok installed libdrm-common libdrm-common 2.4.134-3 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.134-3 install ok installed libdrm2:amd64 libdrm2 2.4.134-3 install ok installed libdsdp-5.8t64 libdsdp-5.8t64 5.8-12 install ok installed libedit2:amd64 libedit2 3.1-20260512-1 install ok installed libelf1t64:amd64 libelf1t64 0.196-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-3 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.9.0-1 install ok installed libfakeroot:amd64 libfakeroot 2.1.4-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.11-1 install ok installed libfile-basedir-perl libfile-basedir-perl 0.09-2 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.23-1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-4+b5 install ok installed libfile-listing-perl libfile-listing-perl 6.16-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.37-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b3 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgav1-2:amd64 libgav1-2 0.20.0-2+b2 install ok installed libgbm1:amd64 libgbm1 26.1.6-1 install ok installed libgcc-16-dev:amd64 libgcc-16-dev 16.2.0-3 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.12.4-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran-16-dev:amd64 libgfortran-16-dev 16.2.0-3 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-3 install ok installed libgl1:amd64 libgl1 1.7.0-3+b1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 26.1.6-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.90.0-1 install ok installed libglib2.0-data libglib2.0-data 2.90.0-1 install ok installed libglpk40:amd64 libglpk40 5.0-3 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-3+b1 install ok installed libglx-mesa0:amd64 libglx-mesa0 26.1.6-1 install ok installed libglx0:amd64 libglx0 1.7.0-3+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 16.2.0-3 install ok installed libgpg-error-l10n libgpg-error-l10n 1.61-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.61-5 install ok installed libgpm2:amd64 libgpm2 1.20.7-12+b2 install ok installed libgprofng0:amd64 libgprofng0 2.47-6 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.15-2 install ok installed libgsl28:amd64 libgsl28 2.8+dfsg-6+b1 install ok installed libgslcblas0:amd64 libgslcblas0 2.8+dfsg-6+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libharfbuzz-subset0:amd64 libharfbuzz-subset0 12.3.2-2+b2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libhdf5-320:amd64 libhdf5-320 2.2.0+repack-5 install ok installed libhdr-histogram6:amd64 libhdr-histogram6 0.11.8-4+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhtml-form-perl libhtml-form-perl 6.13-1 install ok installed libhtml-format-perl libhtml-format-perl 2.16-2 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.83-2+b2 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.24-1 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-3 install ok installed libhts3t64:amd64 libhts3t64 1.22.1+ds2-1+b2 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.7-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.12-2 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.17-1 install ok installed libhttp-date-perl libhttp-date-perl 6.08-1 install ok installed libhttp-message-perl libhttp-message-perl 7.04-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-2 install ok installed libhwasan0:amd64 libhwasan0 16.2.0-3 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.15.0-2 install ok installed libhwloc15:amd64 libhwloc15 2.15.0-2 install ok installed libice6:amd64 libice6 2:1.1.1-1+b2 install ok installed libicu-dev:amd64 libicu-dev 78.3-2 install ok installed libicu78:amd64 libicu78 78.3-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libimagequant0:amd64 libimagequant0 4.4.1-1+b2 install ok installed libio-compress-brotli-perl libio-compress-brotli-perl 0.019000-1+b1 install ok installed libio-html-perl libio-html-perl 1.004-3 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.099-1 install ok installed libio-stringy-perl libio-stringy-perl 2.113-2 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.30-2 install ok installed libisl23:amd64 libisl23 0.28-1 install ok installed libitm1:amd64 libitm1 16.2.0-3 install ok installed libjansson4:amd64 libjansson4 2.15.1-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg-dev:amd64 libjpeg-dev 1:3.1.3-4 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:3.1.3-4 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 9.1.0-9 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblapack-dev:amd64 liblapack-dev 3.12.1-8 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblcms2-2:amd64 liblcms2-2 2.19.1-1 install ok installed libldap-common libldap-common 2.6.14+dfsg-2 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed libllhttp9.4:amd64 libllhttp9.4 9.4.3+~cs12.11.9-2 install ok installed libllvm21:amd64 libllvm21 1:21.1.8-13 install ok installed liblmdb0:amd64 liblmdb0 0.9.35-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-10+b1 install ok installed liblsan0:amd64 liblsan0 16.2.0-3 install ok installed libltdl7:amd64 libltdl7 2.6.2-2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-2 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.15-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma-dev:amd64 liblzma-dev 5.8.4-1 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-3+b2 install ok installed libmailtools-perl libmailtools-perl 2.22-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.7-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.7-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.7-3 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-3 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.4.1+dfsg-1 install ok installed libncurses-dev:amd64 libncurses-dev 6.6+20260608-2 install ok installed libncurses6:amd64 libncurses6 6.6+20260608-2 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnet-dbus-perl libnet-dbus-perl 1.2.0-2+b4 install ok installed libnet-http-perl libnet-http-perl 6.24-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-2 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.96-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libnode137:amd64 libnode137 24.21.0+dfsg+~cs24.13.4-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.4-1.1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.58.2-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.58.2-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.58.2-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.4 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.4 install ok installed libpciaccess0:amd64 libpciaccess0 0.19-2 install ok installed libpcre2-16-0:amd64 libpcre2-16-0 10.48-3.1 install ok installed libpcre2-32-0:amd64 libpcre2-32-0 10.48-3.1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libpcre2-dev:amd64 libpcre2-dev 10.48-3.1 install ok installed libpcre2-posix3:amd64 libpcre2-posix3 10.48-3.1 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpkgconf7:amd64 libpkgconf7 2.5.1-4 install ok installed libpng-dev:amd64 libpng-dev 1.6.59-1 install ok installed libpng-tools libpng-tools 1.6.59-1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.59-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libpython3-dev:amd64 libpython3-dev 3.14.7-3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14:amd64 libpython3.14 3.14.8-1 install ok installed libpython3.14-dev:amd64 libpython3.14-dev 3.14.8-1 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.8-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.8-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-9 install ok installed libquadmath0:amd64 libquadmath0 16.2.0-3 install ok installed libraqm0:amd64 libraqm0 0.10.5-1 install ok installed librav1e0.8:amd64 librav1e0.8 0.8.1-12 install ok installed libreadline-dev:amd64 libreadline-dev 8.3-4 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsensors-config libsensors-config 1:3.6.2-2 install ok installed libsensors5:amd64 libsensors5 1:3.6.2-2+b2 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsframe3:amd64 libsframe3 2.47-6 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.6.0-0.1 install ok installed libsimdjson33:amd64 libsimdjson33 4.6.11-1 install ok installed libsimdutf35:amd64 libsimdutf35 9.1.2-1 install ok installed libskia146:amd64 libskia146 146.20260602~git.3476902+dfsg-5 install ok installed libsm6:amd64 libsm6 2:1.2.6-1+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.3.1-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++-16-dev:amd64 libstdc++-16-dev 16.2.0-3 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.14.1+dfsg-1 install ok installed libsvtav1enc4:amd64 libsvtav1enc4 4.1.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtbb12:amd64 libtbb12 2023.1.0-3 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2023.1.0-3 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2023.1.0-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.18+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-iconv-perl:amd64 libtext-iconv-perl 1.7-9+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libthai-data libthai-data 0.1.30-3 install ok installed libthai0:amd64 libthai0 0.1.30-3 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-4 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtimedate-perl libtimedate-perl 2.3500-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtirpc-common libtirpc-common 1.3.7+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.7+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.7+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.18-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.32-1 install ok installed libtsan2:amd64 libtsan2 16.2.0-3 install ok installed libubsan1:amd64 libubsan1 16.2.0-3 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libumfpack6:amd64 libumfpack6 1:7.14.1+dfsg-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed liburi-perl liburi-perl 5.37-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libuv1t64:amd64 libuv1t64 1.52.1-4 install ok installed libvulkan1:amd64 libvulkan1 1.4.363.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.26.0-1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.26.0-1 install ok installed libwebp7:amd64 libwebp7 1.6.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.6.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.6.0-0.1 install ok installed libwww-perl libwww-perl 6.83-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.03-1 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-9 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.16-1+b2 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.17.0-2+b2 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.17.0-2+b2 install ok installed libxcb-present0:amd64 libxcb-present0 1.17.0-2+b2 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.17.0-2+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.17.0-2+b2 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.17.0-2+b2 install ok installed libxcb-xkb1:amd64 libxcb-xkb1 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.6-1+b2 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.3-1+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2+b5 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxi6:amd64 libxi6 2:1.8.3-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3+b5 install ok installed libxkbcommon-x11-0:amd64 libxkbcommon-x11-0 1.13.1-1 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.13.1-1 install ok installed libxkbfile1:amd64 libxkbfile1 1:1.1.0-1+b5 install ok installed libxml-parser-perl libxml-parser-perl 2.47-2+b1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.55-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-2 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.3-4+b1 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.3-4+b1 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.19-1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.4-1+b4 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxshmfence1:amd64 libxshmfence1 1.3.3-1+b2 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.45-0.1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b2 install ok installed libxtst6:amd64 libxtst6 2:1.2.5-1+b2 install ok installed libxv1:amd64 libxv1 2:1.0.13-1+b1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.5-1+b4 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-2+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libyuv0:amd64 libyuv0 0.0.1971.20260904-2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1.1 install ok installed libze1:amd64 libze1 1.32.0-1 install ok installed libzopfli1 libzopfli1 1.0.3-3 install ok installed libzstd-dev:amd64 libzstd-dev 1.5.7+dfsg-4 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed linux-libc-dev linux-libc-dev 7.2.9-1 install ok installed linux-sysctl-defaults linux-sysctl-defaults 4.17 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.2-2 install ok installed luit luit 2.0.20250912-1 install ok installed make make 4.4.1-3 install ok installed manpages manpages 6.19-3 install ok installed manpages-dev manpages-dev 6.19-3 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mesa-libgallium:amd64 mesa-libgallium 26.1.6-1 install ok installed mesa-vulkan-drivers:amd64 mesa-vulkan-drivers 26.1.6-1 install ok installed mount mount 2.42.4-1 install ok installed ncbi-blast+ ncbi-blast+ 2.17.0+ds-7 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-7 install ok installed ncbi-vdb-data ncbi-vdb-data 3.4.1+dfsg-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed ncurses-term ncurses-term 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed node-acorn node-acorn 8.17.0+ds+~cs28.27.25-1 install ok installed node-balanced-match node-balanced-match 2.0.0-1 install ok installed node-brace-expansion node-brace-expansion 2.1.7+~1.1.2-1 install ok installed node-commander node-commander 14.0.3-7 install ok installed node-corepack node-corepack 0.35.0-2 install ok installed node-debug node-debug 4.4.3+~4.1.13-1 install ok installed node-llhttp node-llhttp 9.4.3+~cs12.11.9-2 install ok installed node-lru-cache node-lru-cache 11.2.7-7 install ok installed node-mathjax-full node-mathjax-full 3.2.2+~cs4.2.1-6 install ok installed node-minimatch node-minimatch 9.0.7-2 install ok installed node-mj-context-menu node-mj-context-menu 0.9.1+ds-3 install ok installed node-ms node-ms 2.1.3+~cs0.7.31-3 install ok installed node-semver node-semver 7.7.4+~cs9.7.4-2 install ok installed node-speech-rule-engine node-speech-rule-engine 4.1.4+~0.1.31-2 install ok installed node-undici node-undici 8.10.2+dfsg+~cs3.2.2-1 install ok installed node-xmldom node-xmldom 0.9.12-1 install ok installed node-xtend node-xtend 4.0.2-3 install ok installed nodejs nodejs 24.21.0+dfsg+~cs24.13.4-1 install ok installed nodejs-doc nodejs-doc 24.21.0+dfsg+~cs24.13.4-1 install ok installed numba-doc numba-doc 0.65.1+dfsg-3 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.4-1+b1 install ok installed openssl openssl 3.6.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.2-2 install ok installed patch patch 2.8-2 install ok installed pci.ids pci.ids 0.0~2026.09.23-1 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b2 install ok installed pkgconf:amd64 pkgconf 2.5.1-4 install ok installed pkgconf-bin pkgconf-bin 2.5.1-4 install ok installed procps procps 2:4.0.7-1 install ok installed psmisc psmisc 23.7-2 install ok installed publicsuffix publicsuffix 20260725.1419-1 install ok installed python-babel-localedata python-babel-localedata 2.18.0+git2026-08-12-3 install ok installed python-biopython-doc python-biopython-doc 1.88+dfsg-2 install ok installed python-matplotlib-data python-matplotlib-data 3.10.9+dfsg1-1 install ok installed python-odf-doc python-odf-doc 1.4.2-4 install ok installed python-odf-tools python-odf-tools 1.4.2-4 install ok installed python-tables-data python-tables-data 3.11.1-3 install ok installed python3 python3 3.14.7-3 install ok installed python3-attr python3-attr 26.1.0-1 install ok installed python3-babel python3-babel 2.18.0+git2026-08-12-3 install ok installed python3-bioframe python3-bioframe 0.8.0-2 install ok installed python3-biopython python3-biopython 1.88+dfsg-2+b1 install ok installed python3-bottleneck python3-bottleneck 1.4.2+ds1-2+b3 install ok installed python3-brotli python3-brotli 1.2.0-4+b1 install ok installed python3-bs4 python3-bs4 4.15.0-1 install ok installed python3-cairo python3-cairo 1.29.1-1 install ok installed python3-certifi python3-certifi 2026.7.22+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.7-2+b1 install ok installed python3-colorama python3-colorama 0.4.6-5 install ok installed python3-contourpy python3-contourpy 1.3.3-2+b1 install ok installed python3-cpuinfo python3-cpuinfo 9.0.0+git20221119-3 install ok installed python3-cssselect python3-cssselect 1.5.0-1 install ok installed python3-cvxopt python3-cvxopt 1.3.2+dfsg-2+b2 install ok installed python3-cycler python3-cycler 0.12.1-3 install ok installed python3-dateutil python3-dateutil 2.9.0-5 install ok installed python3-decorator python3-decorator 5.3.1-1 install ok installed python3-defusedxml python3-defusedxml 0.7.1-3 install ok installed python3-dev python3-dev 3.14.7-3 install ok installed python3-et-xmlfile python3-et-xmlfile 2.0.0-2 install ok installed python3-fonttools python3-fonttools 4.62.1-7+b1 install ok installed python3-freetype python3-freetype 2.5.1-3 install ok installed python3-html5lib python3-html5lib 1.2-5 install ok installed python3-idna python3-idna 3.20-1 install ok installed python3-iniconfig python3-iniconfig 2.1.0-2 install ok installed python3-jinja2 python3-jinja2 3.1.6-4 install ok installed python3-joblib python3-joblib 1.5.3-2 install ok installed python3-kiwisolver python3-kiwisolver 1.5.1-1 install ok installed python3-legacy-cgi python3-legacy-cgi 2.6.4-3 install ok installed python3-llvmlite python3-llvmlite 0.47.0-0.1 install ok installed python3-lxml:amd64 python3-lxml 6.1.3-1 install ok installed python3-lz4 python3-lz4 4.4.5+dfsg-1+b1 install ok installed python3-markupsafe python3-markupsafe 3.0.3-2+b1 install ok installed python3-matplotlib python3-matplotlib 3.10.9+dfsg1-1+b1 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3-mpmath python3-mpmath 1.4.1-4 install ok installed python3-narwhals python3-narwhals 2.26.0-1 install ok installed python3-numba python3-numba 0.65.1+dfsg-3+b1 install ok installed python3-numexpr python3-numexpr 2.14.2-1+b1 install ok installed python3-numpy python3-numpy 1:2.4.6+ds-4+b1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.6+ds-4+b1 install ok installed python3-odf python3-odf 1.4.2-4 install ok installed python3-olefile python3-olefile 0.47-1 install ok installed python3-openpyxl python3-openpyxl 3.1.5+dfsg-4 install ok installed python3-packaging python3-packaging 26.2-2 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-5 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-5 install ok installed python3-patsy python3-patsy 1.0.3-1 install ok installed python3-pil:amd64 python3-pil 12.3.0-1+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 12.3.0-1+b1 install ok installed python3-pip python3-pip 26.1.2+dfsg-1 install ok installed python3-platformdirs python3-platformdirs 4.10.0-1 install ok installed python3-pluggy python3-pluggy 1.6.0-2 install ok installed python3-pooch python3-pooch 1.9.0-2 install ok installed python3-psutil python3-psutil 7.1.0-1 install ok installed python3-pyfaidx python3-pyfaidx 0.8.1.3-2 install ok installed python3-pygments python3-pygments 2.20.0+dfsg-2 install ok installed python3-pyparsing python3-pyparsing 3.3.2-2 install ok installed python3-pysam python3-pysam 0.23.3+ds-2+b2 install ok installed python3-pytest python3-pytest 9.1.1-1 install ok installed python3-pytz python3-pytz 2026.4-1 install ok installed python3-reportlab python3-reportlab 5.0.0-4 install ok installed python3-requests python3-requests 2.34.2-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-4 install ok installed python3-scipy python3-scipy 1.17.1-5+b1 install ok installed python3-skia-pathops python3-skia-pathops 0.9.2-2 install ok installed python3-sklearn python3-sklearn 1.9.0+dfsg-1 install ok installed python3-sklearn-lib:amd64 python3-sklearn-lib 1.9.0+dfsg-1+b1 install ok installed python3-soupsieve python3-soupsieve 2.8.4-1 install ok installed python3-statsmodels python3-statsmodels 0.14.6+dfsg-3 install ok installed python3-statsmodels-lib:amd64 python3-statsmodels-lib 0.14.6+dfsg-3+b1 install ok installed python3-sympy python3-sympy 1.14.0-5 install ok installed python3-tables python3-tables 3.11.1-3 install ok installed python3-tables-lib python3-tables-lib 3.11.1-3 install ok installed python3-threadpoolctl python3-threadpoolctl 3.7.0-2 install ok installed python3-tk python3-tk 3.14.7-3 install ok installed python3-tqdm python3-tqdm 4.70.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.16.0-5 install ok installed python3-ufolib2 python3-ufolib2 0.18.1+dfsg1-2 install ok installed python3-uharfbuzz python3-uharfbuzz 0.53.3-1+b1 install ok installed python3-unicodedata2 python3-unicodedata2 17.0.1+ds-1+b1 install ok installed python3-urllib3 python3-urllib3 2.8.0-1 install ok installed python3-webencodings python3-webencodings 0.5.1-6 install ok installed python3-wheel python3-wheel 0.47.0-2 install ok installed python3-yaml python3-yaml 6.0.3-1+b1 install ok installed python3-zopfli python3-zopfli 0.4.3-2 install ok installed python3.14 python3.14 3.14.8-1 install ok installed python3.14-dev python3.14-dev 3.14.8-1 install ok installed python3.14-minimal python3.14-minimal 3.14.8-1 install ok installed python3.14-tk python3.14-tk 3.14.8-1 install ok installed r-base-core r-base-core 4.6.1-6 install ok installed r-base-dev r-base-dev 4.6.1-6 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.58.1-2 install ok installed r-bioc-dnacopy r-bioc-dnacopy 1.86.0-1 install ok installed r-cran-boot r-cran-boot 1.3-32-1 install ok installed r-cran-class r-cran-class 7.3-24-1 install ok installed r-cran-cluster r-cran-cluster 2.1.8.3-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-foreign r-cran-foreign 0.8.91-1 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-27-1 install ok installed r-cran-lattice r-cran-lattice 0.23-1-1 install ok installed r-cran-mass r-cran-mass 7.3-66-1 install ok installed r-cran-matrix r-cran-matrix 1.7-6-1 install ok installed r-cran-mgcv r-cran-mgcv 1.9-4-1 install ok installed r-cran-nlme r-cran-nlme 3.1.171-1 install ok installed r-cran-nnet r-cran-nnet 7.3-21-1 install ok installed r-cran-rpart r-cran-rpart 4.1.27-1 install ok installed r-cran-spatial r-cran-spatial 7.3-19-1 install ok installed r-cran-survival r-cran-survival 3.8-12-1 install ok installed r-doc-html r-doc-html 4.6.1-6 install ok installed r-pkg-team-core-architecture r-pkg-team-core-architecture 20260707 install ok installed r-recommended r-recommended 4.6.1-6 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed shared-mime-info shared-mime-info 2.4-5+b3 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 3.1.0+dfsg-3 install ok installed sq sq 1.4.1-1 install ok installed sqv sqv 1.5.0-1 install ok installed sse4.2-support sse4.2-support 34 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed ucf ucf 3.0056 install ok installed unicode-data unicode-data 17.0.0-2 install ok installed unzip unzip 6.0-31 install ok installed util-linux util-linux 2.42.4-1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+26 install ok installed x11-utils x11-utils 7.7+7 install ok installed x11-xserver-utils x11-xserver-utils 7.7+11 install ok installed xauth xauth 1:1.1.2-1.1 install ok installed xdg-user-dirs xdg-user-dirs 0.20-1 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xkb-data xkb-data 2.48-1 install ok installed xml-core xml-core 0.21 install ok installed xz-utils xz-utils 5.8.4-1 install ok installed zip zip 3.0-16 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.2-3 2m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', 'remove', '--allow-remove-essential', 'alacritty', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-lato', 'fonts-lyx', 'fonts-roboto-slab', 'fonts-urw-base35', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gfortran', 'gfortran-16', 'gfortran-16-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'icu-devtools', 'isa-support:amd64', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20260526:amd64', 'libada-url0-3:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-7:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libcares2:amd64', 'libcc1-0:amd64', 'libccolamd3:amd64', 'libcholmod5:amd64', 'libclone-perl:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdisplay-info3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgbm1:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran-16-dev:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglpk40:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdr-histogram6:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllhttp9.4:amd64', 'libllvm21:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnode137:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf7:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-dev:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsimdjson33:amd64', 'libsimdutf35:amd64', 'libskia146:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc4:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-iconv-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libumfpack6:amd64', 'libunistring5:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-egl1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2-16:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'libzopfli1', 'libzstd-dev:amd64', 'linux-libc-dev', 'linux-sysctl-defaults', 'luit', 'make', 'manpages', 'manpages-dev', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'ncurses-term', 'netbase', 'node-acorn', 'node-balanced-match', 'node-brace-expansion', 'node-commander', 'node-corepack', 'node-debug', 'node-llhttp', 'node-lru-cache', 'node-mathjax-full', 'node-minimatch', 'node-mj-context-menu', 'node-ms', 'node-semver', 'node-speech-rule-engine', 'node-undici', 'node-xmldom', 'node-xtend', 'nodejs', 'nodejs-doc', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'pci.ids', 'perl', 'perl-modules-5.42', 'perl-openssl-defaults:amd64', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-babel', 'python3-bioframe', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-html5lib', 'python3-idna', 'python3-iniconfig', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-narwhals', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-platformdirs', 'python3-pluggy', 'python3-pooch', 'python3-psutil', 'python3-pyfaidx', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-skia-pathops', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk', 'python3-tqdm', 'python3-typing-extensions', 'python3-ufolib2', 'python3-uharfbuzz', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3-zopfli', 'python3.14', 'python3.14-dev', 'python3.14-minimal', 'python3.14-tk', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-generics', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-pkg-team-core-architecture', 'r-recommended', 'readline-common', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'sse4.2-support', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'cnvkit'] 3m48.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: alacritty binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 bzip2-doc ca-certificates cnvkit cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-lato fonts-lyx fonts-roboto-slab fonts-urw-base35 g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-16 gfortran-16-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools isa-support isympy-common isympy3 javascript-common krb5-locales libabsl20260526 libada-url0-3 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libamd3 libaom3 libasan8 libatomic1 libauthen-sasl-perl libavif16 libbinutils libblas-dev libblas3 libblosc1 libblosc2-7 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcamd3 libcares2 libcc1-0 libccolamd3 libcholmod5 libclone-perl libcolamd3 libcom-err2 libcrypt-urandom-perl libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdav1d7 libdbus-1-3 libdeflate-dev libdeflate0 libdisplay-info3 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libdsdp-5.8t64 libedit2 libelf1t64 libencode-locale-perl libexpat1 libexpat1-dev libfakeroot libffi8 libfftw3-double3 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgbm1 libgcc-16-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran-16-dev libgfortran5 libgl1 libgl1-mesa-dri libglib2.0-0t64 libglib2.0-data libglpk40 libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgraphite2-3 libgsl28 libgslcblas0 libgssapi-krb5-2 libharfbuzz-subset0 libharfbuzz0b libhdf5-320 libhdr-histogram6 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libice6 libicu-dev libicu78 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllhttp9.4 libllvm21 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncbi-vdb3 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnode137 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.42 libpixman-1-0 libpkgconf7 libpng-dev libpng-tools libpng16-16t64 libproc2-1 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.14 libpython3.14-dev libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.8 libreadline-dev libreadline8t64 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe3 libsharpyuv0 libsimdjson33 libsimdutf35 libskia146 libsm6 libsnappy1v5 libsqlite3-0 libssh2-1t64 libstdc++-16-dev libsuitesparseconfig7 libsvtav1enc4 libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libumfpack6 libunistring5 liburi-perl libuv1t64 libvulkan1 libwayland-client0 libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2-16 libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 libze1 libzopfli1 libzstd-dev linux-libc-dev linux-sysctl-defaults luit make manpages manpages-dev media-types mesa-libgallium mesa-vulkan-drivers ncbi-blast+ ncbi-data ncbi-vdb-data ncurses-term netbase node-acorn node-balanced-match node-brace-expansion node-commander node-corepack node-debug node-llhttp node-lru-cache node-mathjax-full node-minimatch node-mj-context-menu node-ms node-semver node-speech-rule-engine node-undici node-xmldom node-xtend nodejs nodejs-doc numba-doc ocl-icd-libopencl1 openssl patch pci.ids perl perl-modules-5.42 perl-openssl-defaults pkgconf pkgconf-bin procps psmisc publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-attr python3-babel python3-bioframe python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-colorama python3-contourpy python3-cpuinfo python3-cssselect python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-et-xmlfile python3-fonttools python3-freetype python3-html5lib python3-idna python3-iniconfig python3-jinja2 python3-joblib python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-narwhals python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-patsy python3-pil python3-pil.imagetk python3-pip python3-platformdirs python3-pluggy python3-pooch python3-psutil python3-pyfaidx python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-skia-pathops python3-sklearn python3-sklearn-lib python3-soupsieve python3-statsmodels python3-statsmodels-lib python3-sympy python3-tables python3-tables-lib python3-threadpoolctl python3-tk python3-tqdm python3-typing-extensions python3-ufolib2 python3-uharfbuzz python3-unicodedata2 python3-urllib3 python3-webencodings python3-wheel python3-yaml python3-zopfli python3.14 python3.14-dev python3.14-minimal python3.14-tk r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-generics r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-pkg-team-core-architecture r-recommended readline-common sensible-utils sgml-base shared-mime-info sphinx-rtd-theme-common sq sse4.2-support ucf unicode-data unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xkb-data xml-core xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 540 to remove and 0 not upgraded. After this operation, 2431 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60314 files and directories currently installed.) Removing alacritty (0.17.0-2) ... Removing r-base-dev (4.6.1-6) ... Removing build-essential (12.12) ... Removing g++ (4:16.1.0-3) ... Removing gfortran (4:16.1.0-3) ... Removing gcc (4:16.1.0-3) ... Removing dpkg-dev (1.23.11) ... Removing g++-x86-64-linux-gnu (4:16.1.0-3) ... Removing bzip2 (1.0.8-6+b2) ... Removing bzip2-doc (1.0.8-6) ... Removing cnvkit (0.9.14-1) ... Removing python3-bioframe (0.8.0-2) ... Removing python3-pooch (1.9.0-2) ... Removing python3-requests (2.34.2-1) ... Removing r-recommended (4.6.1-6) ... Removing r-cran-rpart (4.1.27-1) ... Removing r-cran-survival (3.8-12-1) ... Removing r-cran-spatial (7.3-19-1) ... Removing x11-xserver-utils (7.7+11) ... Removing cpp (4:16.1.0-3) ... Removing gfortran-x86-64-linux-gnu (4:16.1.0-3) ... Removing fakeroot (2.1.4-1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing x11-utils (7.7+7) ... Removing python3-biopython (1.88+dfsg-2+b1) ... Removing python3-reportlab (5.0.0-4) ... Removing python3-skia-pathops (0.9.2-2) ... Removing libskia146:amd64 (146.20260602~git.3476902+dfsg-5) ... Removing python3-matplotlib (3.10.9+dfsg1-1+b1) ... Removing python-matplotlib-data (3.10.9+dfsg1-1) ... Removing fonts-dejavu-extra (2.37-9) ... Removing numba-doc (0.65.1+dfsg-3) ... Removing sphinx-rtd-theme-common (3.1.0+dfsg-3) ... Removing fonts-font-awesome (7.3.0+dfsg-1) ... Removing fonts-font-awesome-legacy (6-3) ... Removing fonts-lato (2.015-1) ... Removing fonts-lyx (2.5.3-1) ... Removing fonts-roboto-slab (2.002+20231012+ds-1) ... Removing fonts-urw-base35 (20200910-9) ... Removing g++-16 (16.2.0-3) ... Removing g++-16-x86-64-linux-gnu (16.2.0-3) ... Removing gfortran-16 (16.2.0-3) ... Removing gfortran-16-x86-64-linux-gnu (16.2.0-3) ... Removing libicu-dev:amd64 (78.3-2) ... Removing icu-devtools (78.3-2) ... Removing ncbi-blast+ (2.17.0+ds-7) ... Removing sse4.2-support (34) ... Removing isa-support:amd64 (34) ... Removing isympy3 (1.14.0-5) ... Removing isympy-common (1.14.0-5) ... Removing javascript-common (12+nmu1) ... Removing krb5-locales (1.22.1-3) ... Removing python-biopython-doc (1.88+dfsg-2) ... Removing node-mathjax-full (3.2.2+~cs4.2.1-6) ... Removing node-speech-rule-engine (4.1.4+~0.1.31-2) ... Removing libalgorithm-merge-perl (0.08-5) ... Removing libalgorithm-diff-xs-perl (0.04-9+b1) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing python3-cvxopt (1.3.2+dfsg-2+b2) ... Removing libumfpack6:amd64 (1:7.14.1+dfsg-1) ... Removing libcholmod5:amd64 (1:7.14.1+dfsg-1) ... Removing libstdc++-16-dev:amd64 (16.2.0-3) ... Removing libgfortran-16-dev:amd64 (16.2.0-3) ... Removing libfile-mimeinfo-perl (0.37-1) ... Removing shared-mime-info (2.4-5+b3) ... Removing libauthen-sasl-perl (2.2000-2) ... Removing liblapack-dev:amd64 (3.12.1-8) ... Removing libblas-dev:amd64 (3.12.1-8) ... Removing python3-statsmodels (0.14.6+dfsg-3) ... Removing python3-sklearn (1.9.0+dfsg-1) ... Removing python3-statsmodels-lib:amd64 (0.14.6+dfsg-3+b1) ... Removing python3-patsy (1.0.3-1) ... Removing python3-sklearn-lib:amd64 (1.9.0+dfsg-1+b1) ... Removing r-cran-mgcv (1.9-4-1) ... Removing python3-tables (3.11.1-3) ... Removing python3-tables-lib (3.11.1-3) ... Removing libblosc1:amd64 (1.21.5+ds-2+b2) ... Removing libblosc2-7:amd64 (2.23.1+ds-2) ... Removing libio-compress-brotli-perl (0.019000-1+b1) ... Removing xfonts-utils (1:7.7+7) ... Removing libbz2-dev:amd64 (1.0.8-6+b2) ... Removing python3-dev (3.14.7-3) ... Removing python3.14-dev (3.14.8-1) ... Removing libpython3-dev:amd64 (3.14.7-3) ... Removing libpython3.14-dev:amd64 (3.14.8-1) ... Removing libpng-dev:amd64 (1.6.59-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Removing libpcre2-dev:amd64 (10.48-3.1) ... Removing libreadline-dev:amd64 (8.3-4) ... Removing libncurses-dev:amd64 (6.6+20260608-2) ... Removing libjpeg-dev:amd64 (1:3.1.3-4) ... Removing libjpeg62-turbo-dev:amd64 (1:3.1.3-4) ... Removing python3-rlpycairo (0.3.0-4) ... Removing python3-cairo (1.29.1-1) ... Removing libcamd3:amd64 (1:7.14.1+dfsg-1) ... Removing libccolamd3:amd64 (1:7.14.1+dfsg-1) ... Removing libnet-dbus-perl (1.2.0-2+b4) ... Removing libxml-twig-perl (1:3.55-1) ... Removing libxml-parser-perl (2.47-2+b1) ... Removing libhtml-form-perl (6.13-1) ... Removing libglpk40:amd64 (5.0-3) ... Removing libcolamd3:amd64 (1:7.14.1+dfsg-1) ... Removing libtirpc-dev:amd64 (1.3.7+ds-1) ... Removing libcrypt-urandom-perl (0.55-1+b1) ... Removing python3-pysam (0.23.3+ds-2+b2) ... Removing libhts3t64:amd64 (1.22.1+ds2-1+b2) ... Removing libcurl3t64-gnutls:amd64 (8.22.0-1) ... Removing libcurl4-gnutls:amd64 (8.22.0-1) ... Removing libdata-dump-perl (1.25-1) ... Removing libdbus-1-3:amd64 (1.16.2-8) ... Removing libdeflate-dev:amd64 (1.25-1) ... Removing mesa-vulkan-drivers:amd64 (26.1.6-1) ... Removing libdisplay-info3:amd64 (0.3.0-1+b1) ... Removing libdpkg-perl (1.23.11) ... Removing libgl1:amd64 (1.7.0-3+b1) ... Removing libglx0:amd64 (1.7.0-3+b1) ... Removing libglx-mesa0:amd64 (26.1.6-1) ... Removing libgl1-mesa-dri:amd64 (26.1.6-1) ... Removing libgbm1:amd64 (26.1.6-1) ... Removing mesa-libgallium:amd64 (26.1.6-1) ... Removing libdrm-amdgpu1:amd64 (2.4.134-3) ... Removing libdrm-intel1:amd64 (2.4.134-3) ... Removing libdrm2:amd64 (2.4.134-3) ... Removing libdrm-common (2.4.134-3) ... Removing libdsdp-5.8t64 (5.8-12) ... Removing libllvm21:amd64 (1:21.1.8-13) ... Removing libedit2:amd64 (3.1-20260512-1) ... Removing libelf1t64:amd64 (0.196-1) ... Removing python3-pip (26.1.2+dfsg-1) ... Removing python3-wheel (0.47.0-2) ... Removing python3-pandas (2.3.3+dfsg-5) ... Removing python3-yaml (6.0.3-1+b1) ... Removing python3-tqdm (4.70.1-1) ... Removing libpython3.14:amd64 (3.14.8-1) ... Removing libexpat1-dev:amd64 (2.9.0-1) ... Removing libfakeroot:amd64 (2.1.4-1) ... Removing libwayland-client0:amd64 (1.26.0-1) ... Removing libfftw3-double3:amd64 (3.3.11-1) ... Removing libfile-desktopentry-perl (0.23-1) ... Removing libfile-basedir-perl (0.09-2) ... Removing libfile-fcntllock-perl (0.22-4+b5) ... Removing libhtml-format-perl (2.16-2) ... Removing libfont-afm-perl (1.20-4) ... Removing libfontenc1:amd64 (1:1.1.8-1+b3) ... Removing python3-openpyxl (3.1.5+dfsg-4) ... Removing libmailtools-perl (2.22-1) ... Removing libnet-smtp-ssl-perl (1.04-2) ... Removing libxml-xpathengine-perl (0.14-2) ... Removing libhttp-daemon-perl (6.17-1) ... Removing libx11-protocol-perl (0.56-9) ... Removing r-bioc-dnacopy (1.86.0-1) ... Removing libglib2.0-data (2.90.0-1) ... Removing libglvnd0:amd64 (1.7.0-3+b1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing python3-numba (0.65.1+dfsg-3+b1) ... Removing libgpg-error-l10n (1.61-5) ... Removing libgpm2:amd64 (1.20.7-12+b2) ... Removing libgsl28:amd64 (2.8+dfsg-6+b1) ... Removing libgslcblas0:amd64 (2.8+dfsg-6+b1) ... Removing libhdf5-320:amd64 (2.2.0+repack-5) ... Removing libhtscodecs2:amd64 (1.6.7-1) ... Removing libhwloc-plugins:amd64 (2.15.0-2) ... Removing libtbb12:amd64 (2023.1.0-3) ... Removing libtbbbind-2-5:amd64 (2023.1.0-3) ... Removing libhwloc15:amd64 (2.15.0-2) ... Removing libxaw7:amd64 (2:1.0.16-1+b2) ... Removing libxmu6:amd64 (2:1.1.3-4+b1) ... Removing libio-stringy-perl (2.113-2) ... Removing libipc-system-simple-perl (1.30-2) ... Removing python-odf-doc (1.4.2-4) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing libjs-sphinxdoc (9.1.0-9) ... Removing libldap-common (2.6.14+dfsg-2) ... Removing liblmdb0:amd64 (0.9.35-1) ... Removing liblocale-gettext-perl (1.07-10+b1) ... Removing libltdl7:amd64 (2.6.2-2) ... Removing liblzma-dev:amd64 (5.8.4-1) ... Removing liblzo2-2:amd64 (2.10-3+b2) ... Removing libncbi-vdb3:amd64 (3.4.1+dfsg-1) ... Removing libmbedtls21:amd64 (3.6.7-3) ... Removing libmbedx509-7:amd64 (3.6.7-3) ... Removing libmbedcrypto16:amd64 (3.6.7-3) ... Removing libncurses6:amd64 (6.6+20260608-2) ... Removing libp11-kit0:amd64 (0.26.5-1) ... Removing libpciaccess0:amd64 (0.19-2) ... Removing libpcre2-16-0:amd64 (10.48-3.1) ... Removing libpcre2-32-0:amd64 (10.48-3.1) ... Removing libpcre2-posix3:amd64 (10.48-3.1) ... Removing pkgconf:amd64 (2.5.1-4) ... Removing pkgconf-bin (2.5.1-4) ... Removing libpkgconf7:amd64 (2.5.1-4) ... Removing libpng-tools (1.6.59-1) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg1-11) ... Removing libsensors5:amd64 (1:3.6.2-2+b2) ... Removing libsensors-config (1:3.6.2-2) ... Removing libsnappy1v5:amd64 (1.3.1-3) ... Removing sq (1.4.1-1) ... Removing libsz2:amd64 (1.1.7-1) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libtbbmalloc2:amd64 (2023.1.0-3) ... Removing libtext-iconv-perl:amd64 (1.7-9+b1) ... Removing libtie-ixhash-perl (1.23-4) ... Removing libvulkan1:amd64 (1.4.363.0-1) ... Removing libwayland-egl1:amd64 (1.26.0-1) ... Removing xauth (1:1.1.2-1.1) ... Removing libxxf86vm1:amd64 (1:1.1.4-2+b1) ... Removing libx11-xcb1:amd64 (2:1.8.13-1) ... Removing libxkbcommon-x11-0:amd64 (1.13.1-1) ... Removing libxcb-xkb1:amd64 (1.17.0-2+b2) ... Removing libxcb-dri3-0:amd64 (1.17.0-2+b2) ... Removing libxcb-glx0:amd64 (1.17.0-2+b2) ... Removing libxcb-present0:amd64 (1.17.0-2+b2) ... Removing libxcb-randr0:amd64 (1.17.0-2+b2) ... Removing libxcb-shape0:amd64 (1.17.0-2+b2) ... Removing libxcb-sync1:amd64 (1.17.0-2+b2) ... Removing libxcb-xfixes0:amd64 (1.17.0-2+b2) ... Removing libxcomposite1:amd64 (1:0.4.6-1+b2) ... Removing libxcursor1:amd64 (1:1.2.3-1+b2) ... Removing libxxf86dga1:amd64 (2:1.1.5-1+b4) ... Removing libxfixes3:amd64 (1:6.0.0-2+b5) ... Removing libxi6:amd64 (2:1.8.3-1) ... Removing libxinerama1:amd64 (2:1.1.4-3+b5) ... Removing libxkbcommon0:amd64 (1.13.1-1) ... Removing libxkbfile1:amd64 (1:1.1.0-1+b5) ... Removing libxmuu1:amd64 (2:1.1.3-4+b1) ... Removing libxnvctrl0:amd64 (535.171.04-1+b3) ... Removing libxpm4:amd64 (1:3.5.19-1) ... Removing libxrandr2:amd64 (2:1.5.4-1+b4) ... Removing libxshmfence1:amd64 (1.3.3-1+b2) ... Removing libxtst6:amd64 (2:1.2.5-1+b2) ... Removing libxv1:amd64 (2:1.0.13-1+b1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing libz3-4:amd64 (4.13.3-1.1) ... Removing libze1:amd64 (1.32.0-1) ... Removing libzstd-dev:amd64 (1.5.7+dfsg-4) ... Removing linux-sysctl-defaults (4.17) ... Removing luit (2.0.20250912-1) ... Removing 'diversion of /usr/bin/luit to /usr/bin/luit.x11-utils by luit' Removing 'diversion of /usr/share/man/man1/luit.1.gz to /usr/share/man/man1/luit.x11-utils.1.gz by luit' Removing make (4.4.1-3) ... Removing manpages-dev (6.19-3) ... Removing manpages (6.19-3) ... Removing ncbi-data (6.1.20170106+dfsg2-7) ... Removing ncbi-vdb-data (3.4.1+dfsg-1) ... Removing ncurses-term (6.6+20260608-2) ... Removing node-commander (14.0.3-7) ... Removing node-mj-context-menu (0.9.1+ds-3) ... Removing node-xmldom (0.9.12-1) ... Removing nodejs-doc (24.21.0+dfsg+~cs24.13.4-1) ... Removing ocl-icd-libopencl1:amd64 (2.3.4-1+b1) ... Removing patch (2.8-2) ... Removing pci.ids (0.0~2026.09.23-1) ... Removing psmisc (23.7-2) ... Removing publicsuffix (20260725.1419-1) ... Removing python3-babel (2.18.0+git2026-08-12-3) ... Removing python-babel-localedata (2.18.0+git2026-08-12-3) ... Removing python-odf-tools (1.4.2-4) ... Removing python-tables-data (3.11.1-3) ... Removing python3-bottleneck (1.4.2+ds1-2+b3) ... Removing python3-bs4 (4.15.0-1) ... Removing python3-certifi (2026.7.22+ds-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.7-2+b1) ... Removing python3-colorama (0.4.6-5) ... Removing python3-contourpy (1.3.3-2+b1) ... Removing python3-cpuinfo (9.0.0+git20221119-3) ... Removing python3-cssselect (1.5.0-1) ... Removing python3-cycler (0.12.1-3) ... Removing python3-dateutil (2.9.0-5) ... Removing python3-odf (1.4.2-4) ... Removing python3-defusedxml (0.7.1-3) ... Removing python3-et-xmlfile (2.0.0-2) ... Removing python3-freetype (2.5.1-3) ... Removing python3-html5lib (1.2-5) ... Removing python3-idna (3.20-1) ... Removing python3-pytest (9.1.1-1) ... Removing python3-iniconfig (2.1.0-2) ... Removing python3-jinja2 (3.1.6-4) ... Removing python3-joblib (1.5.3-2) ... Removing python3-kiwisolver (1.5.1-1) ... Removing python3-legacy-cgi (2.6.4-3) ... Removing python3-llvmlite (0.47.0-0.1) ... Removing python3-markupsafe (3.0.3-2+b1) ... Removing python3-narwhals (2.26.0-1) ... Removing python3-numexpr (2.14.2-1+b1) ... Removing python3-olefile (0.47-1) ... Removing python3-pyfaidx (0.8.1.3-2) ... Removing python3-packaging (26.2-2) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-5) ... Removing python3-platformdirs (4.10.0-1) ... Removing python3-pluggy (1.6.0-2) ... Removing python3-psutil (7.1.0-1) ... Removing python3-pygments (2.20.0+dfsg-2) ... Removing python3-pyparsing (3.3.2-2) ... Removing python3-pytz (2026.4-1) ... Removing python3-soupsieve (2.8.4-1) ... Removing python3-threadpoolctl (3.7.0-2) ... Removing python3-typing-extensions (4.16.0-5) ... Removing python3-urllib3 (2.8.0-1) ... Removing python3-webencodings (0.5.1-6) ... Removing r-bioc-biocgenerics (0.58.1-2) ... Removing r-cran-boot (1.3-32-1) ... Removing r-cran-class (7.3-24-1) ... Removing r-cran-cluster (2.1.8.3-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-foreign (0.8.91-1) ... Removing r-cran-generics (0.1.4-1) ... Removing r-cran-kernsmooth (2.23-27-1) ... Removing r-cran-nlme (3.1.171-1) ... Removing r-cran-mass (7.3-66-1) ... Removing r-cran-nnet (7.3-21-1) ... Removing r-doc-html (4.6.1-6) ... Removing r-pkg-team-core-architecture (20260707) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.21) ... Removing sgml-base (1.31+nmu1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing xdg-user-dirs (0.20-1) ... Removing xkb-data (2.48-1) ... Removing xz-utils (5.8.4-1) ... Removing gcc-16 (16.2.0-3) ... Removing binutils (2.47-6) ... Removing libgprofng0:amd64 (2.47-6) ... Removing gcc-x86-64-linux-gnu (4:16.1.0-3) ... Removing gcc-16-x86-64-linux-gnu (16.2.0-3) ... Removing binutils-x86-64-linux-gnu (2.47-6) ... Removing libctf0:amd64 (2.47-6) ... Removing libbinutils:amd64 (2.47-6) ... Removing binutils-common:amd64 (2.47-6) ... Removing r-cran-matrix (1.7-6-1) ... Removing cpp-16 (16.2.0-3) ... Removing cpp-x86-64-linux-gnu (4:16.1.0-3) ... Removing cpp-16-x86-64-linux-gnu (16.2.0-3) ... Removing python3-pil.imagetk:amd64 (12.3.0-1+b1) ... Removing python3-tk (3.14.7-3) ... Removing python3.14-tk (3.14.8-1) ... Removing libamd3:amd64 (1:7.14.1+dfsg-1) ... Removing libgcc-16-dev:amd64 (16.2.0-3) ... Removing libasan8:amd64 (16.2.0-3) ... Removing libc6-dev:amd64 (2.43-7) ... Removing libc-dev-bin (2.43-7) ... Removing libcc1-0:amd64 (16.2.0-3) ... Removing libctf-nobfd0:amd64 (2.47-6) ... Removing libsuitesparseconfig7:amd64 (1:7.14.1+dfsg-1) ... Removing libhwasan0:amd64 (16.2.0-3) ... Removing libisl23:amd64 (0.28-1) ... Removing libitm1:amd64 (16.2.0-3) ... Removing libjansson4:amd64 (2.15.1-1) ... Removing liblsan0:amd64 (16.2.0-3) ... Removing libmpc3:amd64 (1.3.1-3) ... Removing libmpfr6:amd64 (4.2.2-3) ... Removing libquadmath0:amd64 (16.2.0-3) ... Removing libsframe3:amd64 (2.47-6) ... Removing libtsan2:amd64 (16.2.0-3) ... Removing libubsan1:amd64 (16.2.0-3) ... Removing linux-libc-dev (7.2.9-1) ... Removing r-cran-lattice (0.23-1-1) ... Removing r-base-core (4.6.1-6) ... Removing libpangocairo-1.0-0:amd64 (1.58.2-1) ... Removing libpangoft2-1.0-0:amd64 (1.58.2-1) ... Removing libpango-1.0-0:amd64 (1.58.2-1) ... Removing fontconfig (2.17.1-5) ... Removing python3-pil:amd64 (12.3.0-1+b1) ... Removing libtk8.6:amd64 (8.6.18-1) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libavif16:amd64 (1.4.2-1) ... Removing libgav1-2:amd64 (0.20.0-2+b2) ... Removing libabsl20260526:amd64 (20260526.0-2+b1) ... Removing libaom3:amd64 (3.14.1-1) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libtirpc3t64:amd64 (1.3.7+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libcurl4t64:amd64 (8.22.0-1) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b2) ... Removing libthai0:amd64 (0.1.30-3) ... Removing libdatrie1:amd64 (0.2.14-2) ... Removing libdav1d7:amd64 (1.5.4-1) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libraqm0:amd64 (0.10.5-1) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing libgomp1:amd64 (16.2.0-3) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Removing libsm6:amd64 (2:1.2.6-1+b2) ... Removing libice6:amd64 (2:1.1.1-1+b2) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libimagequant0:amd64 (4.4.1-1+b2) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libyuv0:amd64 (0.0.1971.20260904-2) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing liblcms2-2:amd64 (2.19.1-1) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing ucf (3.0056) ... Removing procps (2:4.0.7-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libopenjp2-7:amd64 (2.5.4-1.1) ... Removing libpaper-utils (2.2.5-0.4) ... Removing libpaper2:amd64 (2.2.5-0.4) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libproc2-1:amd64 (2:4.0.7-1) ... Removing librav1e0.8:amd64 (0.8.1-12) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libwebpmux3:amd64 (1.6.0-0.1) ... Removing libwebpdemux2:amd64 (1.6.0-0.1) ... Removing libwebp7:amd64 (1.6.0-0.1) ... Removing libsharpyuv0:amd64 (1.6.0-0.1) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing libsvtav1enc4:amd64 (4.1.0+dfsg-1) ... Removing libtcl8.6:amd64 (8.6.18+dfsg-1) ... Removing libtext-wrapi18n-perl (0.06-11) ... Removing libtext-charwidth-perl:amd64 (0.04-12+b1) ... Removing libthai-data (0.1.30-3) ... Removing libtirpc-common (1.3.7+ds-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing sensible-utils (0.0.26) ... Removing unzip (6.0-31) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-16) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing node-acorn (8.17.0+ds+~cs28.27.25-1) ... Removing node-xtend (4.0.2-3) ... Removing nodejs (24.21.0+dfsg+~cs24.13.4-1) ... Removing python3-fonttools (4.62.1-7+b1) ... Removing python3-uharfbuzz (0.53.3-1+b1) ... Removing python3-scipy (1.17.1-5+b1) ... Removing python3-numpy (1:2.4.6+ds-4+b1) ... Removing liblwp-protocol-https-perl (6.15-1) ... Removing libwww-perl (6.83-1) ... Removing libfile-listing-perl (6.16-1) ... Removing python3-lxml:amd64 (6.1.3-1) ... Removing libxslt1.1:amd64 (1.1.45-0.1) ... Removing libgcrypt20:amd64 (1.12.4-2) ... Removing libio-socket-ssl-perl (2.099-1) ... Removing libnet-ssleay-perl:amd64 (1.96-2) ... Removing libhttp-cookies-perl (6.12-2) ... Removing libwww-robotrules-perl (6.03-1) ... Removing libnet-http-perl (6.24-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.83-2+b2) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libgfortran5:amd64 (16.2.0-3) ... Removing libgpg-error0:amd64 (1.61-5) ... Removing libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Removing libhtml-tagset-perl (3.24-1) ... Removing libhttp-negotiate-perl (6.01-2) ... Removing libqhull-r8.0:amd64 (2020.2-9) ... Removing libtry-tiny-perl (0.32-1) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1) ... Removing python3-zopfli (0.4.3-2) ... Removing libzopfli1 (1.0.3-3) ... Removing node-corepack (0.35.0-2) ... Removing perl-openssl-defaults:amd64 (7+b2) ... Removing python3-brotli (1.2.0-4+b1) ... Removing python3-decorator (5.3.1-1) ... Removing python3-lz4 (4.4.5+dfsg-1+b1) ... Removing python3-sympy (1.14.0-5) ... Removing python3-mpmath (1.4.1-4) ... Removing python3-numpy-dev:amd64 (1:2.4.6+ds-4+b1) ... Removing python3-unicodedata2 (17.0.1+ds-1+b1) ... Removing unicode-data (17.0.0-2) ... Removing ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libnode137:amd64 (24.21.0+dfsg+~cs24.13.4-1) ... Removing node-undici (8.10.2+dfsg+~cs3.2.2-1) ... Removing node-llhttp (9.4.3+~cs12.11.9-2) ... Removing node-semver (7.7.4+~cs9.7.4-2) ... Removing libada-url0-3:amd64 (3.4.4-1+b1) ... Removing python3-ufolib2 (0.18.1+dfsg1-2) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.90.0-1) ... Removing libatomic1:amd64 (16.2.0-3) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libfreetype6:amd64 (2.14.3+dfsg-2) ... Removing libbrotli1:amd64 (1.2.0-4+b1) ... Removing libcares2:amd64 (1.34.8-1) ... Removing libhttp-message-perl (7.04-1) ... Removing libclone-perl:amd64 (0.50-1+b2) ... Removing libencode-locale-perl (1.05-3) ... Removing libhttp-date-perl (6.08-1) ... Removing liburi-perl (5.37-1) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libhdr-histogram6:amd64 (0.11.8-4+b2) ... Removing libicu78:amd64 (78.3-2) ... Removing libio-html-perl (1.004-3) ... Removing libllhttp9.4:amd64 (9.4.3+~cs12.11.9-2) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libpng16-16t64:amd64 (1.6.59-1) ... Removing libsimdjson33:amd64 (4.6.11-1) ... Removing libsimdutf35:amd64 (9.1.2-1) ... Removing libtimedate-perl (2.3500-1) ... Removing libuv1t64:amd64 (1.52.1-4) ... Removing node-minimatch (9.0.7-2) ... Removing node-brace-expansion (2.1.7+~1.1.2-1) ... Removing node-balanced-match (2.0.0-1) ... Removing node-debug (4.4.3+~4.1.13-1) ... Removing node-lru-cache (11.2.7-7) ... Removing node-ms (2.1.3+~cs0.7.31-3) ... Removing openssl (3.6.5-1) ... Removing python3-attr (26.1.0-1) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.8-1) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.8-1) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libpython3.14-minimal:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-7) ... 3m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', 'remove', '--allow-remove-essential', 'alacritty', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-lato', 'fonts-lyx', 'fonts-roboto-slab', 'fonts-urw-base35', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gfortran', 'gfortran-16', 'gfortran-16-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'icu-devtools', 'isa-support:amd64', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20260526:amd64', 'libada-url0-3:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-7:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libcares2:amd64', 'libcc1-0:amd64', 'libccolamd3:amd64', 'libcholmod5:amd64', 'libclone-perl:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdisplay-info3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgbm1:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran-16-dev:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglpk40:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdr-histogram6:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllhttp9.4:amd64', 'libllvm21:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnode137:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf7:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-dev:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsimdjson33:amd64', 'libsimdutf35:amd64', 'libskia146:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc4:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-iconv-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libumfpack6:amd64', 'libunistring5:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-egl1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2-16:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'libzopfli1', 'libzstd-dev:amd64', 'linux-libc-dev', 'linux-sysctl-defaults', 'luit', 'make', 'manpages', 'manpages-dev', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'ncurses-term', 'netbase', 'node-acorn', 'node-balanced-match', 'node-brace-expansion', 'node-commander', 'node-corepack', 'node-debug', 'node-llhttp', 'node-lru-cache', 'node-mathjax-full', 'node-minimatch', 'node-mj-context-menu', 'node-ms', 'node-semver', 'node-speech-rule-engine', 'node-undici', 'node-xmldom', 'node-xtend', 'nodejs', 'nodejs-doc', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'pci.ids', 'perl', 'perl-modules-5.42', 'perl-openssl-defaults:amd64', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-babel', 'python3-bioframe', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-html5lib', 'python3-idna', 'python3-iniconfig', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-narwhals', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-platformdirs', 'python3-pluggy', 'python3-pooch', 'python3-psutil', 'python3-pyfaidx', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-skia-pathops', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk', 'python3-tqdm', 'python3-typing-extensions', 'python3-ufolib2', 'python3-uharfbuzz', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3-zopfli', 'python3.14', 'python3.14-dev', 'python3.14-minimal', 'python3.14-tk', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-generics', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-pkg-team-core-architecture', 'r-recommended', 'readline-common', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'sse4.2-support', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'cnvkit'] 3m48.0s INFO: Running scripts post_remove 3m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_remove_exceptions'] 3m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_remove_exceptions'] 3m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg', '--purge', 'alacritty', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-lato', 'fonts-lyx', 'fonts-roboto-slab', 'fonts-urw-base35', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gfortran', 'gfortran-16', 'gfortran-16-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'icu-devtools', 'isa-support:amd64', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20260526:amd64', 'libada-url0-3:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-7:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libcares2:amd64', 'libcc1-0:amd64', 'libccolamd3:amd64', 'libcholmod5:amd64', 'libclone-perl:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdisplay-info3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgbm1:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran-16-dev:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglpk40:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdr-histogram6:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllhttp9.4:amd64', 'libllvm21:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnode137:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf7:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-dev:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsimdjson33:amd64', 'libsimdutf35:amd64', 'libskia146:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc4:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-iconv-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libumfpack6:amd64', 'libunistring5:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-egl1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2-16:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'libzopfli1', 'libzstd-dev:amd64', 'linux-libc-dev', 'linux-sysctl-defaults', 'luit', 'make', 'manpages', 'manpages-dev', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'ncurses-term', 'netbase', 'node-acorn', 'node-balanced-match', 'node-brace-expansion', 'node-commander', 'node-corepack', 'node-debug', 'node-llhttp', 'node-lru-cache', 'node-mathjax-full', 'node-minimatch', 'node-mj-context-menu', 'node-ms', 'node-semver', 'node-speech-rule-engine', 'node-undici', 'node-xmldom', 'node-xtend', 'nodejs', 'nodejs-doc', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'pci.ids', 'perl', 'perl-modules-5.42', 'perl-openssl-defaults:amd64', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-babel', 'python3-bioframe', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-html5lib', 'python3-idna', 'python3-iniconfig', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-narwhals', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-platformdirs', 'python3-pluggy', 'python3-pooch', 'python3-psutil', 'python3-pyfaidx', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-skia-pathops', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk', 'python3-tqdm', 'python3-typing-extensions', 'python3-ufolib2', 'python3-uharfbuzz', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3-zopfli', 'python3.14', 'python3.14-dev', 'python3.14-minimal', 'python3.14-tk', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-generics', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-pkg-team-core-architecture', 'r-recommended', 'readline-common', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'sse4.2-support', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 3m48.9s DUMP: dpkg: warning: ignoring request to remove alacritty which is not installed (Reading database ... 5064 files and directories currently installed.) Purging configuration files for binutils (2.47-6) ... Purging configuration files for binutils-common:amd64 (2.47-6) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove build-essential which is not installed dpkg: warning: ignoring request to remove bzip2 which is not installed dpkg: warning: ignoring request to remove bzip2-doc which is not installed Purging configuration files for ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:16.1.0-3) ... dpkg: warning: ignoring request to remove cpp-16 which is not installed dpkg: warning: ignoring request to remove cpp-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which is not installed Purging configuration files for dpkg-dev (1.23.11) ... dpkg: warning: ignoring request to remove fakeroot which is not installed Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-9) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which is not installed Purging configuration files for fonts-dejavu-mono (2.37-9) ... dpkg: warning: ignoring request to remove fonts-font-awesome which is not installed dpkg: warning: ignoring request to remove fonts-font-awesome-legacy which is not installed dpkg: warning: ignoring request to remove fonts-lato which is not installed dpkg: warning: ignoring request to remove fonts-lyx which is not installed dpkg: warning: ignoring request to remove fonts-roboto-slab which is not installed Purging configuration files for fonts-urw-base35 (20200910-9) ... dpkg: warning: ignoring request to remove g++ which is not installed dpkg: warning: ignoring request to remove g++-16 which is not installed dpkg: warning: ignoring request to remove g++-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc which is not installed dpkg: warning: ignoring request to remove gcc-16 which is not installed dpkg: warning: ignoring request to remove gcc-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gfortran which is not installed dpkg: warning: ignoring request to remove gfortran-16 which is not installed dpkg: warning: ignoring request to remove gfortran-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gfortran-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove icu-devtools which is not installed dpkg: warning: ignoring request to remove isa-support which is not installed dpkg: warning: ignoring request to remove isympy-common which is not installed dpkg: warning: ignoring request to remove isympy3 which is not installed Purging configuration files for javascript-common (12+nmu1) ... dpkg: warning: ignoring request to remove krb5-locales which is not installed dpkg: warning: ignoring request to remove libabsl20260526 which is not installed dpkg: warning: ignoring request to remove libada-url0-3 which is not installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which is not installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which is not installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which is not installed dpkg: warning: ignoring request to remove libamd3 which is not installed dpkg: warning: ignoring request to remove libaom3 which is not installed dpkg: warning: ignoring request to remove libasan8 which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which is not installed dpkg: warning: ignoring request to remove libavif16 which is not installed dpkg: warning: ignoring request to remove libbinutils which is not installed dpkg: warning: ignoring request to remove libblas-dev which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libblosc1 which is not installed dpkg: warning: ignoring request to remove libblosc2-7 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libbz2-dev which is not installed dpkg: warning: ignoring request to remove libc-dev-bin which is not installed dpkg: warning: ignoring request to remove libc6-dev which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcamd3 which is not installed dpkg: warning: ignoring request to remove libcares2 which is not installed dpkg: warning: ignoring request to remove libcc1-0 which is not installed dpkg: warning: ignoring request to remove libccolamd3 which is not installed dpkg: warning: ignoring request to remove libcholmod5 which is not installed dpkg: warning: ignoring request to remove libclone-perl which is not installed dpkg: warning: ignoring request to remove libcolamd3 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcrypt-urandom-perl which is not installed dpkg: warning: ignoring request to remove libctf-nobfd0 which is not installed dpkg: warning: ignoring request to remove libctf0 which is not installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdata-dump-perl which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove libdav1d7 which is not installed dpkg: warning: ignoring request to remove libdbus-1-3 which is not installed dpkg: warning: ignoring request to remove libdeflate-dev which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libdisplay-info3 which is not installed dpkg: warning: ignoring request to remove libdpkg-perl which is not installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which is not installed dpkg: warning: ignoring request to remove libdrm-common which is not installed dpkg: warning: ignoring request to remove libdrm-intel1 which is not installed dpkg: warning: ignoring request to remove libdrm2 which is not installed dpkg: warning: ignoring request to remove libdsdp-5.8t64 which is not installed dpkg: warning: ignoring request to remove libedit2 which is not installed dpkg: warning: ignoring request to remove libelf1t64 which is not installed dpkg: warning: ignoring request to remove libencode-locale-perl which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libexpat1-dev which is not installed Purging configuration files for libfakeroot:amd64 (2.1.4-1) ... dpkg: warning: while removing libfakeroot:amd64, directory '/usr/lib/x86_64-linux-gnu/libfakeroot' not empty so not removed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfftw3-double3 which is not installed dpkg: warning: ignoring request to remove libfile-basedir-perl which is not installed dpkg: warning: ignoring request to remove libfile-desktopentry-perl which is not installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which is not installed dpkg: warning: ignoring request to remove libfile-listing-perl which is not installed dpkg: warning: ignoring request to remove libfile-mimeinfo-perl which is not installed dpkg: warning: ignoring request to remove libfont-afm-perl which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfontenc1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgav1-2 which is not installed dpkg: warning: ignoring request to remove libgbm1 which is not installed dpkg: warning: ignoring request to remove libgcc-16-dev which is not installed dpkg: warning: ignoring request to remove libgcrypt20 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran-16-dev which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgl1 which is not installed Purging configuration files for libgl1-mesa-dri:amd64 (26.1.6-1) ... Purging configuration files for libglib2.0-0t64:amd64 (2.90.0-1) ... dpkg: warning: ignoring request to remove libglib2.0-data which is not installed dpkg: warning: ignoring request to remove libglpk40 which is not installed dpkg: warning: ignoring request to remove libglvnd0 which is not installed dpkg: warning: ignoring request to remove libglx-mesa0 which is not installed dpkg: warning: ignoring request to remove libglx0 which is not installed dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgpg-error-l10n which is not installed dpkg: warning: ignoring request to remove libgpg-error0 which is not installed dpkg: warning: ignoring request to remove libgpm2 which is not installed dpkg: warning: ignoring request to remove libgprofng0 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed dpkg: warning: ignoring request to remove libgsl28 which is not installed dpkg: warning: ignoring request to remove libgslcblas0 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libharfbuzz-subset0 which is not installed dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libhdf5-320 which is not installed dpkg: warning: ignoring request to remove libhdr-histogram6 which is not installed dpkg: warning: ignoring request to remove libhtml-form-perl which is not installed dpkg: warning: ignoring request to remove libhtml-format-perl which is not installed dpkg: warning: ignoring request to remove libhtml-parser-perl which is not installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which is not installed dpkg: warning: ignoring request to remove libhtml-tree-perl which is not installed dpkg: warning: ignoring request to remove libhts3t64 which is not installed dpkg: warning: ignoring request to remove libhtscodecs2 which is not installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which is not installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which is not installed dpkg: warning: ignoring request to remove libhttp-date-perl which is not installed dpkg: warning: ignoring request to remove libhttp-message-perl which is not installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which is not installed dpkg: warning: ignoring request to remove libhwasan0 which is not installed dpkg: warning: ignoring request to remove libhwloc-plugins which is not installed dpkg: warning: ignoring request to remove libhwloc15 which is not installed dpkg: warning: ignoring request to remove libice6 which is not installed dpkg: warning: ignoring request to remove libicu-dev which is not installed dpkg: warning: ignoring request to remove libicu78 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libimagequant0 which is not installed dpkg: warning: ignoring request to remove libio-compress-brotli-perl which is not installed dpkg: warning: ignoring request to remove libio-html-perl which is not installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which is not installed dpkg: warning: ignoring request to remove libio-stringy-perl which is not installed dpkg: warning: ignoring request to remove libipc-system-simple-perl which is not installed dpkg: warning: ignoring request to remove libisl23 which is not installed dpkg: warning: ignoring request to remove libitm1 which is not installed dpkg: warning: ignoring request to remove libjansson4 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg-dev which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which is not installed Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack-dev which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblcms2-2 which is not installed Purging configuration files for libldap-common (2.6.14+dfsg-2) ... dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove libllhttp9.4 which is not installed dpkg: warning: ignoring request to remove libllvm21 which is not installed dpkg: warning: ignoring request to remove liblmdb0 which is not installed dpkg: warning: ignoring request to remove liblocale-gettext-perl which is not installed dpkg: warning: ignoring request to remove liblsan0 which is not installed dpkg: warning: ignoring request to remove libltdl7 which is not installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which is not installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which is not installed dpkg: warning: ignoring request to remove liblzma-dev which is not installed dpkg: warning: ignoring request to remove liblzo2-2 which is not installed dpkg: warning: ignoring request to remove libmailtools-perl which is not installed dpkg: warning: ignoring request to remove libmbedcrypto16 which is not installed dpkg: warning: ignoring request to remove libmbedtls21 which is not installed dpkg: warning: ignoring request to remove libmbedx509-7 which is not installed dpkg: warning: ignoring request to remove libmpc3 which is not installed dpkg: warning: ignoring request to remove libmpfr6 which is not installed dpkg: warning: ignoring request to remove libncbi-vdb3 which is not installed dpkg: warning: ignoring request to remove libncurses-dev which is not installed dpkg: warning: ignoring request to remove libncurses6 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnet-dbus-perl which is not installed dpkg: warning: ignoring request to remove libnet-http-perl which is not installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which is not installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libnode137 which is not installed dpkg: warning: ignoring request to remove libopenjp2-7 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpaper-utils which is not installed Purging configuration files for libpaper2:amd64 (2.2.5-0.4) ... dpkg: warning: ignoring request to remove libpciaccess0 which is not installed dpkg: warning: ignoring request to remove libpcre2-16-0 which is not installed dpkg: warning: ignoring request to remove libpcre2-32-0 which is not installed dpkg: warning: ignoring request to remove libpcre2-dev which is not installed dpkg: warning: ignoring request to remove libpcre2-posix3 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpkgconf7 which is not installed dpkg: warning: ignoring request to remove libpng-dev which is not installed dpkg: warning: ignoring request to remove libpng-tools which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libproc2-1 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-dev which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed dpkg: warning: ignoring request to remove libpython3.14 which is not installed dpkg: warning: ignoring request to remove libpython3.14-dev which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.8-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libqhull-r8.0 which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed dpkg: warning: ignoring request to remove libraqm0 which is not installed dpkg: warning: ignoring request to remove librav1e0.8 which is not installed dpkg: warning: ignoring request to remove libreadline-dev which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed Purging configuration files for libsasl2-modules:amd64 (2.1.28+dfsg1-11) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed Purging configuration files for libsensors-config (1:3.6.2-2) ... dpkg: warning: ignoring request to remove libsensors5 which is not installed dpkg: warning: ignoring request to remove libsframe3 which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsimdjson33 which is not installed dpkg: warning: ignoring request to remove libsimdutf35 which is not installed dpkg: warning: ignoring request to remove libskia146 which is not installed dpkg: warning: ignoring request to remove libsm6 which is not installed dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libstdc++-16-dev which is not installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which is not installed dpkg: warning: ignoring request to remove libsvtav1enc4 which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libtbb12 which is not installed dpkg: warning: ignoring request to remove libtbbbind-2-5 which is not installed dpkg: warning: ignoring request to remove libtbbmalloc2 which is not installed dpkg: warning: ignoring request to remove libtcl8.6 which is not installed dpkg: warning: ignoring request to remove libtext-charwidth-perl which is not installed dpkg: warning: ignoring request to remove libtext-iconv-perl which is not installed dpkg: warning: ignoring request to remove libtext-wrapi18n-perl which is not installed dpkg: warning: ignoring request to remove libthai-data which is not installed dpkg: warning: ignoring request to remove libthai0 which is not installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed dpkg: warning: ignoring request to remove libtimedate-perl which is not installed Purging configuration files for libtirpc-common (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which is not installed Purging configuration files for libtirpc3t64:amd64 (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which is not installed dpkg: warning: ignoring request to remove libtry-tiny-perl which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libumfpack6 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove liburi-perl which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libvulkan1 which is not installed dpkg: warning: ignoring request to remove libwayland-client0 which is not installed dpkg: warning: ignoring request to remove libwayland-egl1 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libwebpdemux2 which is not installed dpkg: warning: ignoring request to remove libwebpmux3 which is not installed dpkg: warning: ignoring request to remove libwww-perl which is not installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libx11-protocol-perl which is not installed dpkg: warning: ignoring request to remove libx11-xcb1 which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxaw7 which is not installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which is not installed dpkg: warning: ignoring request to remove libxcb-glx0 which is not installed dpkg: warning: ignoring request to remove libxcb-present0 which is not installed dpkg: warning: ignoring request to remove libxcb-randr0 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shape0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb-sync1 which is not installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which is not installed dpkg: warning: ignoring request to remove libxcb-xkb1 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxcomposite1 which is not installed dpkg: warning: ignoring request to remove libxcursor1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxfixes3 which is not installed dpkg: warning: ignoring request to remove libxft2 which is not installed dpkg: warning: ignoring request to remove libxi6 which is not installed dpkg: warning: ignoring request to remove libxinerama1 which is not installed dpkg: warning: ignoring request to remove libxkbcommon-x11-0 which is not installed dpkg: warning: ignoring request to remove libxkbcommon0 which is not installed dpkg: warning: ignoring request to remove libxkbfile1 which is not installed dpkg: warning: ignoring request to remove libxml-parser-perl which is not installed dpkg: warning: ignoring request to remove libxml-twig-perl which is not installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxmu6 which is not installed dpkg: warning: ignoring request to remove libxmuu1 which is not installed dpkg: warning: ignoring request to remove libxnvctrl0 which is not installed dpkg: warning: ignoring request to remove libxpm4 which is not installed dpkg: warning: ignoring request to remove libxrandr2 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libxshmfence1 which is not installed dpkg: warning: ignoring request to remove libxslt1.1 which is not installed dpkg: warning: ignoring request to remove libxss1 which is not installed dpkg: warning: ignoring request to remove libxt6t64 which is not installed dpkg: warning: ignoring request to remove libxtst6 which is not installed dpkg: warning: ignoring request to remove libxv1 which is not installed dpkg: warning: ignoring request to remove libxxf86dga1 which is not installed dpkg: warning: ignoring request to remove libxxf86vm1 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed dpkg: warning: ignoring request to remove libyuv0 which is not installed dpkg: warning: ignoring request to remove libz3-4 which is not installed dpkg: warning: ignoring request to remove libze1 which is not installed dpkg: warning: ignoring request to remove libzopfli1 which is not installed dpkg: warning: ignoring request to remove libzstd-dev which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed dpkg: warning: ignoring request to remove linux-sysctl-defaults which is not installed Purging configuration files for luit (2.0.20250912-1) ... dpkg: warning: ignoring request to remove make which is not installed dpkg: warning: ignoring request to remove manpages which is not installed dpkg: warning: ignoring request to remove manpages-dev which is not installed Purging configuration files for media-types (14.0.0) ... dpkg: warning: ignoring request to remove mesa-libgallium which is not installed dpkg: warning: ignoring request to remove mesa-vulkan-drivers which is not installed dpkg: warning: ignoring request to remove ncbi-blast+ which is not installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-7) ... Purging configuration files for ncbi-vdb-data (3.4.1+dfsg-1) ... dpkg: warning: ignoring request to remove ncurses-term which is not installed Purging configuration files for netbase (6.6) ... dpkg: warning: ignoring request to remove node-acorn which is not installed dpkg: warning: ignoring request to remove node-balanced-match which is not installed dpkg: warning: ignoring request to remove node-brace-expansion which is not installed dpkg: warning: ignoring request to remove node-commander which is not installed dpkg: warning: ignoring request to remove node-corepack which is not installed dpkg: warning: ignoring request to remove node-debug which is not installed dpkg: warning: ignoring request to remove node-llhttp which is not installed dpkg: warning: ignoring request to remove node-lru-cache which is not installed dpkg: warning: ignoring request to remove node-mathjax-full which is not installed dpkg: warning: ignoring request to remove node-minimatch which is not installed dpkg: warning: ignoring request to remove node-mj-context-menu which is not installed dpkg: warning: ignoring request to remove node-ms which is not installed dpkg: warning: ignoring request to remove node-semver which is not installed dpkg: warning: ignoring request to remove node-speech-rule-engine which is not installed Purging configuration files for node-undici (8.10.2+dfsg+~cs3.2.2-1) ... dpkg: warning: ignoring request to remove node-xmldom which is not installed dpkg: warning: ignoring request to remove node-xtend which is not installed dpkg: warning: ignoring request to remove nodejs which is not installed dpkg: warning: ignoring request to remove nodejs-doc which is not installed dpkg: warning: ignoring request to remove numba-doc which is not installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which is not installed Purging configuration files for openssl (3.6.5-1) ... dpkg: warning: ignoring request to remove patch which is not installed dpkg: warning: ignoring request to remove pci.ids which is not installed Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed dpkg: warning: ignoring request to remove perl-openssl-defaults which is not installed Purging configuration files for pkgconf:amd64 (2.5.1-4) ... dpkg: warning: ignoring request to remove pkgconf-bin which is not installed Purging configuration files for procps (2:4.0.7-1) ... dpkg: warning: ignoring request to remove psmisc which is not installed dpkg: warning: ignoring request to remove publicsuffix which is not installed dpkg: warning: ignoring request to remove python-babel-localedata which is not installed dpkg: warning: ignoring request to remove python-biopython-doc which is not installed Purging configuration files for python-matplotlib-data (3.10.9+dfsg1-1) ... dpkg: warning: ignoring request to remove python-odf-doc which is not installed dpkg: warning: ignoring request to remove python-odf-tools which is not installed dpkg: warning: ignoring request to remove python-tables-data which is not installed Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-attr which is not installed dpkg: warning: ignoring request to remove python3-babel which is not installed dpkg: warning: ignoring request to remove python3-bioframe which is not installed dpkg: warning: ignoring request to remove python3-biopython which is not installed dpkg: warning: ignoring request to remove python3-bottleneck which is not installed dpkg: warning: ignoring request to remove python3-brotli which is not installed dpkg: warning: ignoring request to remove python3-bs4 which is not installed dpkg: warning: ignoring request to remove python3-cairo which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-colorama which is not installed dpkg: warning: ignoring request to remove python3-contourpy which is not installed dpkg: warning: ignoring request to remove python3-cpuinfo which is not installed dpkg: warning: ignoring request to remove python3-cssselect which is not installed dpkg: warning: ignoring request to remove python3-cvxopt which is not installed dpkg: warning: ignoring request to remove python3-cycler which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-defusedxml which is not installed dpkg: warning: ignoring request to remove python3-dev which is not installed dpkg: warning: ignoring request to remove python3-et-xmlfile which is not installed dpkg: warning: ignoring request to remove python3-fonttools which is not installed dpkg: warning: ignoring request to remove python3-freetype which is not installed dpkg: warning: ignoring request to remove python3-html5lib which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed dpkg: warning: ignoring request to remove python3-iniconfig which is not installed dpkg: warning: ignoring request to remove python3-jinja2 which is not installed dpkg: warning: ignoring request to remove python3-joblib which is not installed dpkg: warning: ignoring request to remove python3-kiwisolver which is not installed dpkg: warning: ignoring request to remove python3-legacy-cgi which is not installed dpkg: warning: ignoring request to remove python3-llvmlite which is not installed dpkg: warning: ignoring request to remove python3-lxml which is not installed dpkg: warning: ignoring request to remove python3-lz4 which is not installed dpkg: warning: ignoring request to remove python3-markupsafe which is not installed dpkg: warning: ignoring request to remove python3-matplotlib which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-mpmath which is not installed dpkg: warning: ignoring request to remove python3-narwhals which is not installed dpkg: warning: ignoring request to remove python3-numba which is not installed dpkg: warning: ignoring request to remove python3-numexpr which is not installed Purging configuration files for python3-numpy (1:2.4.6+ds-4+b1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-odf which is not installed dpkg: warning: ignoring request to remove python3-olefile which is not installed dpkg: warning: ignoring request to remove python3-openpyxl which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-patsy which is not installed dpkg: warning: ignoring request to remove python3-pil which is not installed dpkg: warning: ignoring request to remove python3-pil.imagetk which is not installed dpkg: warning: ignoring request to remove python3-pip which is not installed dpkg: warning: ignoring request to remove python3-platformdirs which is not installed dpkg: warning: ignoring request to remove python3-pluggy which is not installed dpkg: warning: ignoring request to remove python3-pooch which is not installed dpkg: warning: ignoring request to remove python3-psutil which is not installed dpkg: warning: ignoring request to remove python3-pyfaidx which is not installed dpkg: warning: ignoring request to remove python3-pygments which is not installed dpkg: warning: ignoring request to remove python3-pyparsing which is not installed dpkg: warning: ignoring request to remove python3-pysam which is not installed dpkg: warning: ignoring request to remove python3-pytest which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-reportlab which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-rlpycairo which is not installed dpkg: warning: ignoring request to remove python3-scipy which is not installed dpkg: warning: ignoring request to remove python3-skia-pathops which is not installed dpkg: warning: ignoring request to remove python3-sklearn which is not installed dpkg: warning: ignoring request to remove python3-sklearn-lib which is not installed dpkg: warning: ignoring request to remove python3-soupsieve which is not installed dpkg: warning: ignoring request to remove python3-statsmodels which is not installed dpkg: warning: ignoring request to remove python3-statsmodels-lib which is not installed Purging configuration files for python3-sympy (1.14.0-5) ... dpkg: warning: ignoring request to remove python3-tables which is not installed dpkg: warning: ignoring request to remove python3-tables-lib which is not installed dpkg: warning: ignoring request to remove python3-threadpoolctl which is not installed dpkg: warning: ignoring request to remove python3-tk which is not installed dpkg: warning: ignoring request to remove python3-tqdm which is not installed dpkg: warning: ignoring request to remove python3-typing-extensions which is not installed dpkg: warning: ignoring request to remove python3-ufolib2 which is not installed dpkg: warning: ignoring request to remove python3-uharfbuzz which is not installed dpkg: warning: ignoring request to remove python3-unicodedata2 which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3-webencodings which is not installed dpkg: warning: ignoring request to remove python3-wheel which is not installed dpkg: warning: ignoring request to remove python3-yaml which is not installed dpkg: warning: ignoring request to remove python3-zopfli which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed dpkg: warning: ignoring request to remove python3.14-dev which is not installed Purging configuration files for python3.14-minimal (3.14.8-1) ... dpkg: warning: ignoring request to remove python3.14-tk which is not installed Purging configuration files for r-base-core (4.6.1-6) ... dpkg: warning: ignoring request to remove r-base-dev which is not installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-dnacopy which is not installed dpkg: warning: ignoring request to remove r-cran-boot which is not installed dpkg: warning: ignoring request to remove r-cran-class which is not installed dpkg: warning: ignoring request to remove r-cran-cluster which is not installed dpkg: warning: ignoring request to remove r-cran-codetools which is not installed dpkg: warning: ignoring request to remove r-cran-foreign which is not installed dpkg: warning: ignoring request to remove r-cran-generics which is not installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which is not installed dpkg: warning: ignoring request to remove r-cran-lattice which is not installed dpkg: warning: ignoring request to remove r-cran-mass which is not installed dpkg: warning: ignoring request to remove r-cran-matrix which is not installed dpkg: warning: ignoring request to remove r-cran-mgcv which is not installed dpkg: warning: ignoring request to remove r-cran-nlme which is not installed dpkg: warning: ignoring request to remove r-cran-nnet which is not installed dpkg: warning: ignoring request to remove r-cran-rpart which is not installed dpkg: warning: ignoring request to remove r-cran-spatial which is not installed dpkg: warning: ignoring request to remove r-cran-survival which is not installed dpkg: warning: ignoring request to remove r-doc-html which is not installed dpkg: warning: ignoring request to remove r-pkg-team-core-architecture which is not installed dpkg: warning: ignoring request to remove r-recommended which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove sensible-utils which is not installed Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for shared-mime-info (2.4-5+b3) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which is not installed dpkg: warning: ignoring request to remove sq which is not installed Purging configuration files for sse4.2-support (34) ... Purging configuration files for ucf (3.0056) ... dpkg: warning: ignoring request to remove unicode-data which is not installed dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+26) ... Purging configuration files for x11-utils (7.7+7) ... Purging configuration files for x11-xserver-utils (7.7+11) ... dpkg: warning: ignoring request to remove xauth which is not installed Purging configuration files for xdg-user-dirs (0.20-1) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed dpkg: warning: ignoring request to remove xfonts-encodings which is not installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xkb-data (2.48-1) ... Purging configuration files for xml-core (0.21) ... dpkg: warning: ignoring request to remove xz-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed dpkg: warning: ignoring request to remove zlib1g-dev which is not installed 3m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg', '--purge', 'alacritty', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-lato', 'fonts-lyx', 'fonts-roboto-slab', 'fonts-urw-base35', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gfortran', 'gfortran-16', 'gfortran-16-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'icu-devtools', 'isa-support:amd64', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20260526:amd64', 'libada-url0-3:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavif16:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-7:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libcares2:amd64', 'libcc1-0:amd64', 'libccolamd3:amd64', 'libcholmod5:amd64', 'libclone-perl:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcrypt-urandom-perl', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdisplay-info3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgbm1:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran-16-dev:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglpk40:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdr-histogram6:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllhttp9.4:amd64', 'libllvm21:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnode137:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf7:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-dev:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsimdjson33:amd64', 'libsimdutf35:amd64', 'libskia146:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc4:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-iconv-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'libumfpack6:amd64', 'libunistring5:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-egl1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2-16:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'libzopfli1', 'libzstd-dev:amd64', 'linux-libc-dev', 'linux-sysctl-defaults', 'luit', 'make', 'manpages', 'manpages-dev', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'ncurses-term', 'netbase', 'node-acorn', 'node-balanced-match', 'node-brace-expansion', 'node-commander', 'node-corepack', 'node-debug', 'node-llhttp', 'node-lru-cache', 'node-mathjax-full', 'node-minimatch', 'node-mj-context-menu', 'node-ms', 'node-semver', 'node-speech-rule-engine', 'node-undici', 'node-xmldom', 'node-xtend', 'nodejs', 'nodejs-doc', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'pci.ids', 'perl', 'perl-modules-5.42', 'perl-openssl-defaults:amd64', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-babel', 'python3-bioframe', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-html5lib', 'python3-idna', 'python3-iniconfig', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-narwhals', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-platformdirs', 'python3-pluggy', 'python3-pooch', 'python3-psutil', 'python3-pyfaidx', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-skia-pathops', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk', 'python3-tqdm', 'python3-typing-extensions', 'python3-ufolib2', 'python3-uharfbuzz', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3-zopfli', 'python3.14', 'python3.14-dev', 'python3.14-minimal', 'python3.14-tk', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-generics', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-pkg-team-core-architecture', 'r-recommended', 'readline-common', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'sse4.2-support', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 3m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg', '--purge', 'cnvkit'] 3m48.9s DUMP: dpkg: warning: ignoring request to remove cnvkit which is not installed 3m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg', '--purge', 'cnvkit'] 3m48.9s INFO: Running scripts post_purge 3m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_purge_exceptions'] 3m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_purge_exceptions'] 3m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg', '--purge', '--pending'] 3m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg', '--purge', '--pending'] 3m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg', '--remove', '--pending'] 3m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg', '--remove', '--pending'] 3m48.9s INFO: Running scripts post_test 3m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_test_exceptions'] 3m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'tmp/scripts/post_test_exceptions'] 3m48.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 3m49.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 3m49.5s ERROR: WARN: Broken symlinks: /usr/lib/x86_64-linux-gnu/libfakeroot/libfakeroot-tcp-0.so -> libfakeroot-0.so /usr/lib/x86_64-linux-gnu/libfakeroot/libfakeroot-sysv-0.so -> libfakeroot-sysv.so 3m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg-divert', '--list'] 3m49.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 3m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'dpkg-divert', '--list'] 3m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', 'clean'] 3m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre', 'apt-get', 'clean'] 3m49.6s DEBUG: Recording chroot state 3m50.2s INFO: Warning: Package purging left files on system: /usr/lib/x86_64-linux-gnu/libfakeroot/ owned by: libfakeroot:amd64 /usr/lib/x86_64-linux-gnu/libfakeroot/libfakeroot-sysv-0.so -> libfakeroot-sysv.so not owned /usr/lib/x86_64-linux-gnu/libfakeroot/libfakeroot-tcp-0.so -> libfakeroot-0.so not owned 3m50.2s INFO: PASS: Installation and purging test. 3m50.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/shm'] 3m50.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/shm'] 3m50.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/console'] 3m50.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/console'] 3m50.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/ptmx'] 3m50.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/ptmx'] 3m50.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/pts'] 3m50.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/dev/pts'] 3m50.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/proc'] 3m50.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre/proc'] 3m50.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 3m50.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8lqm3dre'] 3m50.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp8lqm3dre 3m50.8s INFO: PASS: All tests. 3m50.8s INFO: piuparts run ends. ret=0 End: 2026-10-11 02:54:37 GMT