Start: 2025-09-07 10:01:52 GMT Package: mafft Version: 7.525-1 Installed-Size: 13589 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), perl:any Recommends: ncbi-blast+, libwww-perl, lynx, ruby Enhances: t-coffee Description: Multiple alignment program for amino acid or nucleotide sequences Homepage: https://mafft.cbrc.jp/alignment/software/ Description-md5: a65c32f641729a8e070bd5f7c691875a Tag: biology::format:aln, biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, use::comparing, works-with-format::plaintext, works-with::biological-sequence Section: science Priority: optional Filename: pool/main/m/mafft/mafft_7.525-1_amd64.deb Size: 1186280 MD5sum: 0a3218838d6e663da64affdb4886c1a9 SHA256: 15e8eec5fd587fcf5aea7274600dcf352c40d51a66417b9743600bf0d73980b1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt mafft=7.525-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt mafft=7.525-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-39-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.148-1 (2025-08-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6is7e0sh 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6is7e0sh 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6is7e0sh/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', 'update'] 0m2.6s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [146 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9807 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6545 kB] Fetched 16.5 MB in 1s (15.5 MB/s) Reading package lists... 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', 'update'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', '-yf', 'dist-upgrade'] 0m7.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bsdutils gcc-14-base init-system-helpers libapt-pkg7.0 libaudit-common libaudit1 libblkid1 libgcc-s1 libgmp10 liblastlog2-2 libmount1 libpcre2-8-0 libsmartcols1 libssl3t64 libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 login login.defs mount openssl-provider-legacy passwd tzdata util-linux 28 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 12.3 MB of archives. After this operation, 657 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.1-2 [110 kB] Get:3 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.1-2 [28.6 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.1-2 [37.8 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.1-2 [171 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.1-2 [209 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.1-2 [143 kB] Get:8 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.1-2 [1236 kB] Get:9 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.1-2 [162 kB] Get:10 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-2 [52.3 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-2 [75.4 kB] Get:12 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.2-1 [307 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-1.1 [320 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.2-1 [2438 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-2 [736 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 258~rc3-1 [465 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 258~rc3-1 [156 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.5 [1182 kB] Get:19 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.5 [1479 kB] Get:20 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.0.5-1 [13.5 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.0.5-1 [59.4 kB] Get:23 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.1-2 [115 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:26 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:27 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:28 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:29 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-5 [51.5 kB] Preconfiguring packages ... Fetched 12.3 MB in 0s (102 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.1-2_amd64.deb ... Unpacking bsdutils (1:2.41.1-2) over (1:2.41-5) ... Setting up bsdutils (1:2.41.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41.1-2_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.1-2) over (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.1-2_amd64.deb ... Unpacking libuuid1:amd64 (2.41.1-2) over (2.41-5) ... Setting up libuuid1:amd64 (2.41.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.1-2_amd64.deb ... Unpacking libblkid1:amd64 (2.41.1-2) over (2.41-5) ... Setting up libblkid1:amd64 (2.41.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.1-2_amd64.deb ... Unpacking libmount1:amd64 (2.41.1-2) over (2.41-5) ... Setting up libmount1:amd64 (2.41.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.1-2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.1-2) over (2.41-5) ... Setting up libsmartcols1:amd64 (2.41.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.1-2_amd64.deb ... Unpacking util-linux (2.41.1-2) over (2.41-5) ... Setting up util-linux (2.41.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../mount_2.41.1-2_amd64.deb ... Unpacking mount (2.41.1-2) over (2.41-5) ... Selecting previously unselected package gcc-15-base:amd64. Preparing to unpack .../gcc-15-base_15.2.0-2_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-2) ... Setting up gcc-15-base:amd64 (15.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-2_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-2) over (14.2.0-19) ... Setting up libgcc-s1:amd64 (15.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.2-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.2-1) over (3.5.1-1) ... Setting up openssl-provider-legacy (3.5.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.7+dfsg-1.1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.7+dfsg-1.1) over (1.5.7+dfsg-1) ... Setting up libzstd1:amd64 (1.5.7+dfsg-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.2-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.2-1) over (3.5.1-1) ... Setting up libssl3t64:amd64 (3.5.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-2_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-2) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libsystemd0_258~rc3-1_amd64.deb ... Unpacking libsystemd0:amd64 (258~rc3-1) over (257.7-1) ... Setting up libsystemd0:amd64 (258~rc3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libudev1_258~rc3-1_amd64.deb ... Unpacking libudev1:amd64 (258~rc3-1) over (257.7-1) ... Setting up libudev1:amd64 (258~rc3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.5_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.5) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.5_amd64.deb ... Unpacking apt (3.1.5) over (3.0.3) ... Setting up apt (3.1.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.68) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.5-1_all.deb ... Unpacking libaudit-common (1:4.0.5-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.5-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.5-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.1-2_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.1-2) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-5) over (2:6.3.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4940 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1) over (10.45-1) ... Setting up libpcre2-8-0:amd64 (10.46-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4940 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.18.0-1_all.deb ... Unpacking login.defs (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../passwd_1%3a4.18.0-1_amd64.deb ... Unpacking passwd (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4) ... Preparing to unpack .../gcc-14-base_14.3.0-5_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-5) over (14.2.0-19) ... Setting up gcc-14-base:amd64 (14.3.0-5) ... Setting up login.defs (1:4.18.0-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Sep 7 10:01:59 UTC 2025. Universal Time is now: Sun Sep 7 10:01:59 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up passwd (1:4.18.0-1) ... Setting up mount (2.41.1-2) ... Setting up login (1:4.16.0-2+really2.41.1-2) ... Processing triggers for libc-bin (2.41-12) ... 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', '-yf', 'dist-upgrade'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.2s DUMP: e2e95c3e4095de95a61d26ad7729058b - 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.2s INFO: Running scripts post_setup 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_dummy_users'] 0m9.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_dummy_users'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_forbid_home'] 0m9.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_forbid_home'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_minimize'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_minimize'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_zz_backports'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_setup_zz_backports'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', 'clean'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', 'clean'] 0m9.2s DEBUG: Recording chroot state 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41.1-2 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-5 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.5-1 install ok installed libblkid1:amd64 libblkid1 2.41.1-2 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 258~rc3-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258~rc3-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.1-2 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-2 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.1-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg-divert', '--list'] 0m9.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg-divert', '--list'] 0m9.6s INFO: Running scripts is_testable 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/is_testable_uninstallable'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/is_testable_uninstallable'] 0m9.6s INFO: apt-cache does not know about any of the requested packages 0m9.6s INFO: Running scripts pre_test 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_test_exceptions'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_test_exceptions'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_test_root_password'] 0m9.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_test_root_password'] 0m9.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m10.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m10.6s DEBUG: No broken symlinks as far as we can find. 0m10.6s INFO: Running scripts pre_install 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_database-server'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_database-server'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_exceptions'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_exceptions'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_extras'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_extras'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m10.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m11.1s DEBUG: No broken symlinks as far as we can find. 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-cache', 'policy'] 0m11.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-cache', 'policy'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-cache', 'policy', 'mafft'] 0m11.8s DUMP: mafft: Installed: (none) Candidate: 7.525-1 Version table: 7.525-1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-cache', 'policy', 'mafft'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', '-y', 'install', 'mafft=7.525-1'] 0m24.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: bzip2 ca-certificates file fonts-lato javascript-common libauthen-sasl-perl libbrotli1 libclone-perl libcrypt-urandom-perl libdata-dump-perl libencode-locale-perl libexpat1 libffi8 libfile-listing-perl libfont-afm-perl libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libgomp1 libgpm2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libjs-jquery liblmdb0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libp11-kit0 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libtasn1-6 libtimedate-perl libtry-tiny-perl libunistring5 liburi-perl libuv1t64 libwww-perl libwww-robotrules-perl libyaml-0-2 lynx lynx-common mailcap media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl perl perl-modules-5.40 perl-openssl-defaults python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-csv ruby-did-you-mean ruby-net-telnet ruby-ruby2-keywords ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration unzip xz-utils zip Suggested packages: bzip2-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl gdbm-l10n gnutls-bin gpm libcrypt-ssleay-perl sensible-utils libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl debhelper python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binutils binfmt-support readline-doc ri ruby-dev bundler The following NEW packages will be installed: bzip2 ca-certificates file fonts-lato javascript-common libauthen-sasl-perl libbrotli1 libclone-perl libcrypt-urandom-perl libdata-dump-perl libencode-locale-perl libexpat1 libffi8 libfile-listing-perl libfont-afm-perl libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libgomp1 libgpm2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libjs-jquery liblmdb0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libp11-kit0 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libtasn1-6 libtimedate-perl libtry-tiny-perl libunistring5 liburi-perl libuv1t64 libwww-perl libwww-robotrules-perl libyaml-0-2 lynx lynx-common mafft mailcap media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl perl perl-modules-5.40 perl-openssl-defaults python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-csv ruby-did-you-mean ruby-net-telnet ruby-ruby2-keywords ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration unzip xz-utils zip 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After this operation, 278 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get:4 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get:5 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:6 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:10 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-2 [74.8 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-2 [180 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get:13 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:15 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:16 http://deb.debian.org/debian forky/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Get:17 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get:18 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:21 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:22 http://deb.debian.org/debian forky/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libgdbm6t64 amd64 1.26-1 [78.5 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libgdbm-compat4t64 amd64 1.26-1 [52.8 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Get:26 http://deb.debian.org/debian forky/main amd64 perl amd64 5.40.1-6 [267 kB] Get:27 http://deb.debian.org/debian forky/main amd64 xz-utils amd64 5.8.1-1 [660 kB] Get:28 http://deb.debian.org/debian forky/main amd64 javascript-common all 12+nmu1 [4864 B] Get:29 http://deb.debian.org/debian forky/main amd64 libcrypt-urandom-perl amd64 0.54-1 [15.5 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libauthen-sasl-perl all 2.1900-1 [47.9 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:34 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:35 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get:41 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:42 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:43 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get:44 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 15.2.0-2 [152 kB] Get:45 http://deb.debian.org/debian forky/main amd64 libgpm2 amd64 1.20.7-11+b2 [14.4 kB] Get:46 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:47 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get:48 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:49 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:50 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:51 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:52 http://deb.debian.org/debian forky/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:53 http://deb.debian.org/debian forky/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:54 http://deb.debian.org/debian forky/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:55 http://deb.debian.org/debian forky/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:58 http://deb.debian.org/debian forky/main amd64 libio-compress-brotli-perl amd64 0.004001-2+b3 [16.9 kB] Get:59 http://deb.debian.org/debian forky/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:60 http://deb.debian.org/debian forky/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get:62 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:63 http://deb.debian.org/debian forky/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:64 http://deb.debian.org/debian forky/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:65 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:66 http://deb.debian.org/debian forky/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:67 http://deb.debian.org/debian forky/main amd64 libwww-perl all 6.78-1 [183 kB] Get:68 http://deb.debian.org/debian forky/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:69 http://deb.debian.org/debian forky/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:70 http://deb.debian.org/debian forky/main amd64 libmailtools-perl all 2.22-1 [88.8 kB] Get:71 http://deb.debian.org/debian forky/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB] Get:72 http://deb.debian.org/debian forky/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB] Get:73 http://deb.debian.org/debian forky/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB] Get:74 http://deb.debian.org/debian forky/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:75 http://deb.debian.org/debian forky/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:76 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get:77 http://deb.debian.org/debian forky/main amd64 rubygems-integration all 1.19 [5488 B] Get:78 http://deb.debian.org/debian forky/main amd64 ruby3.3 amd64 3.3.8-2 [834 kB] Get:79 http://deb.debian.org/debian forky/main amd64 ruby-rubygems all 3.6.7-2 [407 kB] Get:80 http://deb.debian.org/debian forky/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get:81 http://deb.debian.org/debian forky/main amd64 rake all 13.2.1-1 [65.2 kB] Get:82 http://deb.debian.org/debian forky/main amd64 ruby-csv all 3.3.4-1 [42.2 kB] Get:83 http://deb.debian.org/debian forky/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get:84 http://deb.debian.org/debian forky/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get:85 http://deb.debian.org/debian forky/main amd64 ruby-ruby2-keywords all 0.0.5-1 [4300 B] Get:86 http://deb.debian.org/debian forky/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get:87 http://deb.debian.org/debian forky/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get:88 http://deb.debian.org/debian forky/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:89 http://deb.debian.org/debian forky/main amd64 libruby3.3 amd64 3.3.8-2 [6301 kB] Get:90 http://deb.debian.org/debian forky/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get:91 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get:92 http://deb.debian.org/debian forky/main amd64 lynx-common all 2.9.2-1 [1193 kB] Get:93 http://deb.debian.org/debian forky/main amd64 lynx amd64 2.9.2-1 [641 kB] Get:94 http://deb.debian.org/debian forky/main amd64 mafft amd64 7.525-1 [1186 kB] Get:95 http://deb.debian.org/debian forky/main amd64 mailcap all 3.75 [33.5 kB] Get:96 http://deb.debian.org/debian forky/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get:97 http://deb.debian.org/debian forky/main amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] Get:98 http://deb.debian.org/debian forky/main amd64 ruby-sdbm amd64 1.0.0-5+b7 [15.1 kB] Get:99 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-29 [173 kB] Get:100 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-15 [235 kB] Preconfiguring packages ... Fetched 58.1 MB in 1s (110 MB/s) Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4944 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5304 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-2_all.deb ... Unpacking readline-common (8.3-2) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-2_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-2) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5812 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package bzip2. Preparing to unpack .../01-bzip2_1.0.8-6_amd64.deb ... Unpacking bzip2 (1.0.8-6) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../07-perl-modules-5.40_5.40.1-6_all.deb ... Unpacking perl-modules-5.40 (5.40.1-6) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../08-libgdbm6t64_1.26-1_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.26-1) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../09-libgdbm-compat4t64_1.26-1_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.26-1) ... Selecting previously unselected package libperl5.40:amd64. Preparing to unpack .../10-libperl5.40_5.40.1-6_amd64.deb ... Unpacking libperl5.40:amd64 (5.40.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../11-perl_5.40.1-6_amd64.deb ... Unpacking perl (5.40.1-6) ... Selecting previously unselected package xz-utils. Preparing to unpack .../12-xz-utils_5.8.1-1_amd64.deb ... Unpacking xz-utils (5.8.1-1) ... Selecting previously unselected package javascript-common. Preparing to unpack .../13-javascript-common_12+nmu1_all.deb ... Unpacking javascript-common (12+nmu1) ... Selecting previously unselected package libcrypt-urandom-perl. Preparing to unpack .../14-libcrypt-urandom-perl_0.54-1_amd64.deb ... Unpacking libcrypt-urandom-perl (0.54-1) ... Selecting previously unselected package libauthen-sasl-perl. Preparing to unpack .../15-libauthen-sasl-perl_2.1900-1_all.deb ... Unpacking libauthen-sasl-perl (2.1900-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../16-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libclone-perl:amd64. Preparing to unpack .../17-libclone-perl_0.47-1+b1_amd64.deb ... Unpacking libclone-perl:amd64 (0.47-1+b1) ... Selecting previously unselected package libdata-dump-perl. Preparing to unpack .../18-libdata-dump-perl_1.25-1_all.deb ... Unpacking libdata-dump-perl (1.25-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../19-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../20-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../21-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../22-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libfont-afm-perl. Preparing to unpack .../23-libfont-afm-perl_1.20-4_all.deb ... Unpacking libfont-afm-perl (1.20-4) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../25-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../26-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../27-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../28-libgnutls30t64_3.8.9-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-3) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../29-libgomp1_15.2.0-2_amd64.deb ... Unpacking libgomp1:amd64 (15.2.0-2) ... Selecting previously unselected package libgpm2:amd64. Preparing to unpack .../30-libgpm2_1.20.7-11+b2_amd64.deb ... Unpacking libgpm2:amd64 (1.20.7-11+b2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../31-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../32-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../33-libhtml-parser-perl_3.83-1+b2_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1+b2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../34-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../35-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../36-libhttp-message-perl_7.00-2_all.deb ... Unpacking libhttp-message-perl (7.00-2) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../37-libhtml-form-perl_6.12-1_all.deb ... Unpacking libhtml-form-perl (6.12-1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../38-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libhtml-format-perl. Preparing to unpack .../39-libhtml-format-perl_2.16-2_all.deb ... Unpacking libhtml-format-perl (2.16-2) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../40-libhttp-cookies-perl_6.11-1_all.deb ... Unpacking libhttp-cookies-perl (6.11-1) ... Selecting previously unselected package libhttp-daemon-perl. Preparing to unpack .../41-libhttp-daemon-perl_6.16-1_all.deb ... Unpacking libhttp-daemon-perl (6.16-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../42-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package libio-compress-brotli-perl. Preparing to unpack .../43-libio-compress-brotli-perl_0.004001-2+b3_amd64.deb ... Unpacking libio-compress-brotli-perl (0.004001-2+b3) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../44-perl-openssl-defaults_7+b2_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../45-libnet-ssleay-perl_1.94-3_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.94-3) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../46-libio-socket-ssl-perl_2.095-1_all.deb ... Unpacking libio-socket-ssl-perl (2.095-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../47-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../48-liblmdb0_0.9.31-1+b2_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.31-1+b2) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../49-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../50-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../51-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../52-libwww-perl_6.78-1_all.deb ... Unpacking libwww-perl (6.78-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../53-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../54-libnet-smtp-ssl-perl_1.04-2_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-2) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../55-libmailtools-perl_2.22-1_all.deb ... Unpacking libmailtools-perl (2.22-1) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../56-libmbedcrypto16_3.6.4-2_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../57-libmbedx509-7_3.6.4-2_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../58-libmbedtls21_3.6.4-2_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.4-2) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../59-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../60-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../61-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../62-rubygems-integration_1.19_all.deb ... Unpacking rubygems-integration (1.19) ... Selecting previously unselected package ruby3.3. Preparing to unpack .../63-ruby3.3_3.3.8-2_amd64.deb ... Unpacking ruby3.3 (3.3.8-2) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../64-ruby-rubygems_3.6.7-2_all.deb ... Unpacking ruby-rubygems (3.6.7-2) ... Selecting previously unselected package ruby. Preparing to unpack .../65-ruby_1%3a3.3+b1_amd64.deb ... Unpacking ruby (1:3.3+b1) ... Selecting previously unselected package rake. Preparing to unpack .../66-rake_13.2.1-1_all.deb ... Unpacking rake (13.2.1-1) ... Selecting previously unselected package ruby-csv. Preparing to unpack .../67-ruby-csv_3.3.4-1_all.deb ... Unpacking ruby-csv (3.3.4-1) ... Selecting previously unselected package ruby-did-you-mean. Preparing to unpack .../68-ruby-did-you-mean_1.6.3-2_all.deb ... Unpacking ruby-did-you-mean (1.6.3-2) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../69-ruby-net-telnet_0.2.0-1_all.deb ... Unpacking ruby-net-telnet (0.2.0-1) ... Selecting previously unselected package ruby-ruby2-keywords. Preparing to unpack .../70-ruby-ruby2-keywords_0.0.5-1_all.deb ... Unpacking ruby-ruby2-keywords (0.0.5-1) ... Selecting previously unselected package ruby-webrick. Preparing to unpack .../71-ruby-webrick_1.9.1-1_all.deb ... Unpacking ruby-webrick (1.9.1-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../72-ruby-xmlrpc_0.3.3-2_all.deb ... Unpacking ruby-xmlrpc (0.3.3-2) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../73-libyaml-0-2_0.2.5-2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-2) ... Selecting previously unselected package libruby3.3:amd64. Preparing to unpack .../74-libruby3.3_3.3.8-2_amd64.deb ... Unpacking libruby3.3:amd64 (3.3.8-2) ... Selecting previously unselected package libruby:amd64. Preparing to unpack .../75-libruby_1%3a3.3+b1_amd64.deb ... Unpacking libruby:amd64 (1:3.3+b1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../76-libuv1t64_1.51.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2) ... Selecting previously unselected package lynx-common. Preparing to unpack .../77-lynx-common_2.9.2-1_all.deb ... Unpacking lynx-common (2.9.2-1) ... Selecting previously unselected package lynx. Preparing to unpack .../78-lynx_2.9.2-1_amd64.deb ... Unpacking lynx (2.9.2-1) ... Selecting previously unselected package mafft. Preparing to unpack .../79-mafft_7.525-1_amd64.deb ... Unpacking mafft (7.525-1) ... Selecting previously unselected package mailcap. Preparing to unpack .../80-mailcap_3.75_all.deb ... Unpacking mailcap (3.75) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../81-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../82-ncbi-blast+_2.16.0+ds-7_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-7) ... Selecting previously unselected package ruby-sdbm:amd64. Preparing to unpack .../83-ruby-sdbm_1.0.0-5+b7_amd64.deb ... Unpacking ruby-sdbm:amd64 (1.0.0-5+b7) ... Selecting previously unselected package unzip. Preparing to unpack .../84-unzip_6.0-29_amd64.deb ... Unpacking unzip (6.0-29) ... Selecting previously unselected package zip. Preparing to unpack .../85-zip_3.0-15_amd64.deb ... Unpacking zip (3.0-15) ... Setting up media-types (13.0.0) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up javascript-common (12+nmu1) ... Setting up ncbi-data (6.1.20170106+dfsg2-6) ... Setting up ruby-ruby2-keywords (0.0.5-1) ... Setting up fonts-lato (2.015-1) ... Setting up libgpm2:amd64 (1.20.7-11+b2) ... Setting up libgdbm6t64:amd64 (1.26-1) ... Setting up libgdbm-compat4t64:amd64 (1.26-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up unzip (6.0-29) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up file (1:5.46-5) ... Setting up libgomp1:amd64 (15.2.0-2) ... Setting up bzip2 (1.0.8-6) ... Setting up zip (3.0-15) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up xz-utils (5.8.1-1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up ruby-csv (3.3.4-1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up lynx-common (2.9.2-1) ... Setting up ruby-webrick (1.9.1-1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up perl-modules-5.40 (5.40.1-6) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:amd64 (3.6.4-2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up ruby-did-you-mean (1.6.3-2) ... Setting up openssl (3.5.2-1) ... Setting up readline-common (8.3-2) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up perl (5.40.1-6) ... Setting up libmbedx509-7:amd64 (3.6.4-2) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libio-compress-brotli-perl (0.004001-2+b3) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libio-html-perl (1.004-3) ... Setting up libmbedtls21:amd64 (3.6.4-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libreadline8t64:amd64 (8.3-2) ... Setting up mailcap (3.75) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up liburi-perl (5.30-1) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libfont-afm-perl (1.20-4) ... Setting up python3.13 (3.13.7-1) ... Setting up mafft (7.525-1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libcrypt-urandom-perl (0.54-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up libnet-http-perl (6.23-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up python3 (3.13.5-1) ... Setting up rubygems-integration (1.19) ... Setting up ncbi-blast+ (2.16.0+ds-7) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up lynx (2.9.2-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libio-socket-ssl-perl (2.095-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libauthen-sasl-perl (2.1900-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmailtools-perl (2.22-1) ... Setting up libhttp-daemon-perl (6.16-1) ... Setting up libwww-perl (6.78-1) ... Setting up ruby3.3 (3.3.8-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up ruby (1:3.3+b1) ... Setting up rake (13.2.1-1) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up ruby-rubygems (3.6.7-2) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b7) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', '-y', 'install', 'mafft=7.525-1'] 0m24.4s INFO: Running scripts post_install 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_install_exceptions'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_install_exceptions'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'systemd-tmpfiles', '--cat-config'] 0m24.4s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m24.4s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'systemd-tmpfiles', '--cat-config'] 0m24.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m25.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m25.8s ERROR: WARN: Broken symlinks: /usr/share/man/man1/rdbg.1.gz -> rdbg3.3.1.gz (ruby) 0m26.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', '-ac', '--ignore-obsolete'] 0m27.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', '-ac', '--ignore-obsolete'] 0m27.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.8s DUMP: 0.15.9~deb12u1 0m27.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.8s INFO: Running adequate version 0.15.9~deb12u1 now. 0m27.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'mafft'] 0m27.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'mafft'] 0m27.9s INFO: Running scripts pre_remove 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_exceptions'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/pre_remove_exceptions'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.3s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41.1-2 install ok installed bzip2 bzip2 1.0.8-6 install ok installed ca-certificates ca-certificates 20250419 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed file file 1:5.46-5 install ok installed findutils findutils 4.10.0-3 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-5 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed javascript-common javascript-common 12+nmu1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.5-1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1900-1 install ok installed libblkid1:amd64 libblkid1 2.41.1-2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libclone-perl:amd64 libclone-perl 0.47-1+b1 install ok installed libcrypt-urandom-perl libcrypt-urandom-perl 0.54-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdata-dump-perl libdata-dump-perl 1.25-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libencode-locale-perl libencode-locale-perl 1.05-3 install ok installed libexpat1:amd64 libexpat1 2.7.1-2 install ok installed libffi8:amd64 libffi8 3.4.8-2 install ok installed libfile-listing-perl libfile-listing-perl 6.16-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-4 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-3 install ok installed libgomp1:amd64 libgomp1 15.2.0-2 install ok installed libgpm2:amd64 libgpm2 1.20.7-11+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhtml-form-perl libhtml-form-perl 6.12-1 install ok installed libhtml-format-perl libhtml-format-perl 2.16-2 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.83-1+b2 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.24-1 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-3 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.11-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.16-1 install ok installed libhttp-date-perl libhttp-date-perl 6.06-1 install ok installed libhttp-message-perl libhttp-message-perl 7.00-2 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4 install ok installed libio-compress-brotli-perl libio-compress-brotli-perl 0.004001-2+b3 install ok installed libio-html-perl libio-html-perl 1.004-3 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.095-1 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-2 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-2 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.14-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmagic-mgc libmagic-mgc 1:5.46-5 install ok installed libmagic1t64:amd64 libmagic1t64 1:5.46-5 install ok installed libmailtools-perl libmailtools-perl 2.22-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.4-2 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.4-2 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.4-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-2 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.2.1+dfsg-2 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnet-http-perl libnet-http-perl 6.23-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-2 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.94-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1.1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-6 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.5-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.7-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.7-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-2 install ok installed libruby:amd64 libruby 1:3.3+b1 install ok installed libruby3.3:amd64 libruby3.3 3.3.8-2 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 258~rc3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libtry-tiny-perl libtry-tiny-perl 0.32-1 install ok installed libudev1:amd64 libudev1 258~rc3-1 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed liburi-perl liburi-perl 5.30-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-2 install ok installed libuv1t64:amd64 libuv1t64 1.51.0-2 install ok installed libwww-perl libwww-perl 6.78-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.1-2 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed lynx lynx 2.9.2-1 install ok installed lynx-common lynx-common 2.9.2-1 install ok installed mafft mafft 7.525-1 install ok installed mailcap mailcap 3.75 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.41.1-2 install ok installed ncbi-blast+ ncbi-blast+ 2.16.0+ds-7 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-6 install ok installed ncbi-vdb-data ncbi-vdb-data 3.2.1+dfsg-2 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl openssl 3.5.2-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl perl 5.40.1-6 install ok installed perl-base perl-base 5.40.1-6 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-6 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b2 install ok installed python3 python3 3.13.5-1 install ok installed python3-minimal python3-minimal 3.13.5-1 install ok installed python3.13 python3.13 3.13.7-1 install ok installed python3.13-minimal python3.13-minimal 3.13.7-1 install ok installed rake rake 13.2.1-1 install ok installed readline-common readline-common 8.3-2 install ok installed ruby ruby 1:3.3+b1 install ok installed ruby-csv ruby-csv 3.3.4-1 install ok installed ruby-did-you-mean ruby-did-you-mean 1.6.3-2 install ok installed ruby-net-telnet ruby-net-telnet 0.2.0-1 install ok installed ruby-ruby2-keywords ruby-ruby2-keywords 0.0.5-1 install ok installed ruby-rubygems ruby-rubygems 3.6.7-2 install ok installed ruby-sdbm:amd64 ruby-sdbm 1.0.0-5+b7 install ok installed ruby-webrick ruby-webrick 1.9.1-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.3-2 install ok installed ruby3.3 ruby3.3 3.3.8-2 install ok installed rubygems-integration rubygems-integration 1.19 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed unzip unzip 6.0-29 install ok installed util-linux util-linux 2.41.1-2 install ok installed xz-utils xz-utils 5.8.1-1 install ok installed zip zip 3.0-15 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', 'remove', '--allow-remove-essential', 'bzip2', 'ca-certificates', 'file', 'fonts-lato', 'javascript-common', 'libauthen-sasl-perl', 'libbrotli1:amd64', 'libclone-perl:amd64', 'libcrypt-urandom-perl', 'libdata-dump-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libidn2-0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libjs-jquery', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libtasn1-6:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'libunistring5:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mailcap', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'rake', 'readline-common', 'ruby', 'ruby-csv', 'ruby-did-you-mean', 'ruby-net-telnet', 'ruby-ruby2-keywords', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'unzip', 'xz-utils', 'zip', 'mafft'] 0m31.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bzip2 ca-certificates file fonts-lato javascript-common libauthen-sasl-perl libbrotli1 libclone-perl libcrypt-urandom-perl libdata-dump-perl libencode-locale-perl libexpat1 libffi8 libfile-listing-perl libfont-afm-perl libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libgomp1 libgpm2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libjs-jquery liblmdb0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libp11-kit0 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libtasn1-6 libtimedate-perl libtry-tiny-perl libunistring5 liburi-perl libuv1t64 libwww-perl libwww-robotrules-perl libyaml-0-2 lynx lynx-common mafft mailcap media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl perl perl-modules-5.40 perl-openssl-defaults python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-csv ruby-did-you-mean ruby-net-telnet ruby-ruby2-keywords ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration unzip xz-utils zip 0 upgraded, 0 newly installed, 100 to remove and 0 not upgraded. After this operation, 278 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13724 files and directories currently installed.) Removing bzip2 (1.0.8-6) ... Removing file (1:5.46-5) ... Removing fonts-lato (2.015-1) ... Removing javascript-common (12+nmu1) ... Removing libauthen-sasl-perl (2.1900-1) ... Removing lynx (2.9.2-1) ... Removing libio-compress-brotli-perl (0.004001-2+b3) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libcrypt-urandom-perl (0.54-1) ... Removing libdata-dump-perl (1.25-1) ... Removing ncbi-blast+ (2.16.0+ds-7) ... Removing python3 (3.13.5-1) ... Removing python3.13 (3.13.7-1) ... Removing python3-minimal (3.13.5-1) ... Removing python3.13-minimal (3.13.7-1) ... Removing libexpat1:amd64 (2.7.1-2) ... Removing ruby-sdbm:amd64 (1.0.0-5+b7) ... Removing libpython3-stdlib:amd64 (3.13.5-1) ... Removing libpython3.13-stdlib:amd64 (3.13.7-1) ... Removing libhtml-format-perl (2.16-2) ... Removing libfont-afm-perl (1.20-4) ... Removing mailcap (3.75) ... Removing mafft (7.525-1) ... Removing libhttp-daemon-perl (6.16-1) ... Removing libmailtools-perl (2.22-1) ... Removing libnet-smtp-ssl-perl (1.04-2) ... Removing libgnutls30t64:amd64 (3.8.9-3) ... Removing libgomp1:amd64 (15.2.0-2) ... Removing libgpm2:amd64 (1.20.7-11+b2) ... Removing libhtml-form-perl (6.12-1) ... Removing libidn2-0:amd64 (2.3.8-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing liblmdb0:amd64 (0.9.31-1+b2) ... Removing libmagic1t64:amd64 (1:5.46-5) ... Removing libmagic-mgc (1:5.46-5) ... Removing libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Removing libmbedtls21:amd64 (3.6.4-2) ... Removing libmbedx509-7:amd64 (3.6.4-2) ... Removing libmbedcrypto16:amd64 (3.6.4-2) ... Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libpython3.13-minimal:amd64 (3.13.7-1) ... Removing libreadline8t64:amd64 (8.3-2) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libunistring5:amd64 (1.3-2) ... Removing libuv1t64:amd64 (1.51.0-2) ... Removing lynx-common (2.9.2-1) ... Removing media-types (13.0.0) ... Removing ncbi-data (6.1.20170106+dfsg2-6) ... Removing ncbi-vdb-data (3.2.1+dfsg-2) ... Removing readline-common (8.3-2) ... Removing unzip (6.0-29) ... Removing xz-utils (5.8.1-1) ... Removing zip (3.0-15) ... Removing rake (13.2.1-1) ... Removing ruby (1:3.3+b1) ... Removing ruby-rubygems (3.6.7-2) ... Removing liblwp-protocol-https-perl (6.14-1) ... Removing libwww-perl (6.78-1) ... Removing libhttp-negotiate-perl (6.01-2) ... Removing libfile-listing-perl (6.16-1) ... Removing libhttp-cookies-perl (6.11-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libnet-http-perl (6.23-1) ... Removing libio-socket-ssl-perl (2.095-1) ... Removing libnet-ssleay-perl:amd64 (1.94-3) ... Removing libtry-tiny-perl (0.32-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.83-1+b2) ... Removing libhtml-tagset-perl (3.24-1) ... Removing libruby:amd64 (1:3.3+b1) ... Removing netbase (6.5) ... Removing perl-openssl-defaults:amd64 (7+b2) ... Removing ruby3.3 (3.3.8-2) ... Removing libruby3.3:amd64 (3.3.8-2) ... Removing rubygems-integration (1.19) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (7.00-2) ... Removing libclone-perl:amd64 (0.47-1+b1) ... Removing libencode-locale-perl (1.05-3) ... Removing libffi8:amd64 (3.4.8-2) ... Removing libhttp-date-perl (6.06-1) ... Removing liburi-perl (5.30-1) ... Removing libio-html-perl (1.004-3) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing libtimedate-perl (2.3300-2) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing openssl (3.5.2-1) ... Removing ruby-csv (3.3.4-1) ... Removing ruby-did-you-mean (1.6.3-2) ... Removing ruby-net-telnet (0.2.0-1) ... Removing ruby-ruby2-keywords (0.0.5-1) ... Removing ruby-xmlrpc (0.3.3-2) ... Removing ruby-webrick (1.9.1-1) ... Removing perl (5.40.1-6) ... Removing libperl5.40:amd64 (5.40.1-6) ... Removing libgdbm-compat4t64:amd64 (1.26-1) ... Removing libgdbm6t64:amd64 (1.26-1) ... Removing perl-modules-5.40 (5.40.1-6) ... Processing triggers for libc-bin (2.41-12) ... 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', 'remove', '--allow-remove-essential', 'bzip2', 'ca-certificates', 'file', 'fonts-lato', 'javascript-common', 'libauthen-sasl-perl', 'libbrotli1:amd64', 'libclone-perl:amd64', 'libcrypt-urandom-perl', 'libdata-dump-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libidn2-0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libjs-jquery', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libtasn1-6:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'libunistring5:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mailcap', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'rake', 'readline-common', 'ruby', 'ruby-csv', 'ruby-did-you-mean', 'ruby-net-telnet', 'ruby-ruby2-keywords', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'unzip', 'xz-utils', 'zip', 'mafft'] 0m31.4s INFO: Running scripts post_remove 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_remove_exceptions'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_remove_exceptions'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg', '--purge', 'bzip2', 'ca-certificates', 'file', 'fonts-lato', 'javascript-common', 'libauthen-sasl-perl', 'libbrotli1:amd64', 'libclone-perl:amd64', 'libcrypt-urandom-perl', 'libdata-dump-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libidn2-0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libjs-jquery', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libtasn1-6:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'libunistring5:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mailcap', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'rake', 'readline-common', 'ruby', 'ruby-csv', 'ruby-did-you-mean', 'ruby-net-telnet', 'ruby-ruby2-keywords', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'unzip', 'xz-utils', 'zip'] 0m31.6s DUMP: dpkg: warning: ignoring request to remove bzip2 which isn't installed (Reading database ... 4973 files and directories currently installed.) Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed Purging configuration files for javascript-common (12+nmu1) ... dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-urandom-perl which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libio-compress-brotli-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1t64:amd64 (1:5.46-5) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.7-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.3-2) ... dpkg: warning: ignoring request to remove libruby which isn't installed dpkg: warning: ignoring request to remove libruby3.3 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libuv1t64 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for lynx (2.9.2-1) ... Purging configuration files for lynx-common (2.9.2-1) ... Purging configuration files for mailcap (3.75) ... Purging configuration files for media-types (13.0.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-6) ... Purging configuration files for ncbi-vdb-data (3.2.1+dfsg-2) ... Purging configuration files for netbase (6.5) ... Purging configuration files for openssl (3.5.2-1) ... Purging configuration files for perl (5.40.1-6) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed Purging configuration files for python3 (3.13.5-1) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.7-1) ... dpkg: warning: ignoring request to remove rake which isn't installed Purging configuration files for readline-common (8.3-2) ... dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-csv which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-ruby2-keywords which isn't installed dpkg: warning: ignoring request to remove ruby-rubygems which isn't installed dpkg: warning: ignoring request to remove ruby-sdbm which isn't installed dpkg: warning: ignoring request to remove ruby-webrick which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby3.3 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove unzip which isn't installed dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg', '--purge', 'bzip2', 'ca-certificates', 'file', 'fonts-lato', 'javascript-common', 'libauthen-sasl-perl', 'libbrotli1:amd64', 'libclone-perl:amd64', 'libcrypt-urandom-perl', 'libdata-dump-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libidn2-0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libjs-jquery', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libtasn1-6:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'libunistring5:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mailcap', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'rake', 'readline-common', 'ruby', 'ruby-csv', 'ruby-did-you-mean', 'ruby-net-telnet', 'ruby-ruby2-keywords', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'unzip', 'xz-utils', 'zip'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg', '--purge', 'mafft'] 0m31.6s DUMP: dpkg: warning: ignoring request to remove mafft which isn't installed 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg', '--purge', 'mafft'] 0m31.6s INFO: Running scripts post_purge 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_purge_exceptions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_purge_exceptions'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg', '--purge', '--pending'] 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg', '--purge', '--pending'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg', '--remove', '--pending'] 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg', '--remove', '--pending'] 0m31.7s INFO: Running scripts post_test 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_test_exceptions'] 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'tmp/scripts/post_test_exceptions'] 0m31.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m32.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m32.2s DEBUG: No broken symlinks as far as we can find. 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg-divert', '--list'] 0m32.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'dpkg-divert', '--list'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', 'clean'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh', 'apt-get', 'clean'] 0m32.2s DEBUG: Recording chroot state 0m32.8s INFO: PASS: Installation and purging test. 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/shm'] 0m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/shm'] 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/console'] 0m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/console'] 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/ptmx'] 0m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/ptmx'] 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/pts'] 0m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/dev/pts'] 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/proc'] 0m33.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh/proc'] 0m33.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m33.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6is7e0sh'] 0m33.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6is7e0sh 0m33.3s INFO: PASS: All tests. 0m33.3s INFO: piuparts run ends. ret=0 End: 2025-09-07 10:02:25 GMT