Start: 2026-10-26 09:52:11 GMT Package: python3-kineticstools Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-7) Version: 0.6.1+git20220223.1326a4d+dfsg-7+b1 Installed-Size: 223 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (<< 3.15), python3 (>= 3.14~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20220223.1326a4d+dfsg-7) Description: detection of DNA modifications (Python 3 library) Homepage: https://github.com/PacificBiosciences/kineticsTools Description-md5: 0aa646763554c01a3ab894d63947050f Section: python Priority: optional Filename: pool/main/k/kineticstools/python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-7+b1_amd64.deb Size: 46188 MD5sum: 6949bb38e887403c3d13112f5c8e20e9 SHA256: 06c63f9856ff896d2f7d37a40a0d920fb6fd039437f846b22c2750804b76a39b Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt python3-kineticstools=0.6.1+git20220223.1326a4d+dfsg-7+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d forky --no-upgrade-test --apt python3-kineticstools=0.6.1+git20220223.1326a4d+dfsg-7+b1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.113+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.113-1 (2026-10-15) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpv_15x6v2 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpv_15x6v2 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpv_15x6v2/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', 'update'] 0m2.2s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6665 kB] Fetched 16.9 MB in 1s (15.9 MB/s) Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', '-yf', 'dist-upgrade'] 0m3.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libcap-ng0 libseccomp2 libselinux1 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 163 kB of archives. After this operation, 2048 B of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libcap-ng0 amd64 0.9.6-1+b1 [19.2 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libseccomp2 amd64 2.6.1-1+b2 [51.6 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libselinux1 amd64 3.11-2.1+b1 [92.6 kB] Fetched 163 kB in 0s (3911 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4946 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.9.6-1+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.9.6-1+b1) over (0.9.6-1) ... Setting up libcap-ng0:amd64 (0.9.6-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4947 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.6.1-1+b2_amd64.deb ... Unpacking libseccomp2:amd64 (2.6.1-1+b2) over (2.6.1-1+b1) ... Setting up libseccomp2:amd64 (2.6.1-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4947 files and directories currently installed.) Preparing to unpack .../libselinux1_3.11-2.1+b1_amd64.deb ... Unpacking libselinux1:amd64 (3.11-2.1+b1) over (3.11-2.1) ... Setting up libselinux1:amd64 (3.11-2.1+b1) ... Processing triggers for libc-bin (2.43-7) ... 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', '-yf', 'dist-upgrade'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s DUMP: e2dfcdc585090deeea31ec9c658b69f4 - 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s INFO: Running scripts post_setup 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_dummy_users'] 0m4.7s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_dummy_users'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_forbid_home'] 0m4.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_forbid_home'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_minimize'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_minimize'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_zz_backports'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_setup_zz_backports'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', 'clean'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', 'clean'] 0m4.8s DEBUG: Recording chroot state 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg-divert', '--list'] 0m5.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg-divert', '--list'] 0m5.3s INFO: Running scripts is_testable 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/is_testable_uninstallable'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/is_testable_uninstallable'] 0m5.3s INFO: apt-cache does not know about any of the requested packages 0m5.3s INFO: Running scripts pre_test 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_test_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_test_exceptions'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_test_root_password'] 0m5.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_test_root_password'] 0m5.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 0m5.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 0m5.9s DEBUG: No broken symlinks as far as we can find. 0m5.9s INFO: Running scripts pre_install 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 0m6.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 0m6.4s DEBUG: No broken symlinks as far as we can find. 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-cache', 'policy'] 0m7.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-cache', 'policy'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-cache', 'policy', 'python3-kineticstools'] 0m7.3s DUMP: python3-kineticstools: Installed: (none) Candidate: 0.6.1+git20220223.1326a4d+dfsg-7+b1 Version table: 0.6.1+git20220223.1326a4d+dfsg-7+b1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-cache', 'policy', 'python3-kineticstools'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', '-y', 'install', 'python3-kineticstools=0.6.1+git20220223.1326a4d+dfsg-7+b1'] 1m15.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: bash-completion binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu curl fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu isa-support javascript-common kineticstools-data krb5-locales libabsl20260526 libada-url0-3 libaom3 libasan8 libatomic1 libavif16 libbigwig0t64 libbinutils libblas3 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcares2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdav1d7 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgnutls30t64 libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz-subset0 libharfbuzz0b libhdf5-320 libhdf5-hl-320 libhdr-histogram6 libhts3t64 libhtscodecs2 libhwasan0 libicu78 libidn2-0 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllhttp9.4 liblmdb0 liblsan0 liblzf1 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncbi-vdb3 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnode137 libopenjp2-7 libp11-kit0 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.8 libreadline8t64 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe3 libsharpyuv0 libsimdjson33 libsimdutf35 libsqlite3-0 libssh2-1t64 libstdc++-16-dev libsvtav1enc4 libsz2 libtasn1-6 libtiff6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2-16 libxrender1 libyaml-0-2 libyuv0 linux-libc-dev manpages manpages-dev media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase node-acorn node-balanced-match node-brace-expansion node-commander node-corepack node-debug node-llhttp node-lru-cache node-mathjax-full node-minimatch node-mj-context-menu node-ms node-semver node-speech-rule-engine node-undici node-xmldom node-xtend nodejs nodejs-doc openssl perl perl-modules-5.42 publicsuffix python-biopython-doc python3 python3-avro python3-biopython python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-decorator python3-freetype python3-h5py python3-h5py-serial python3-idna python3-iso8601 python3-minimal python3-numpy python3-numpy-dev python3-olefile python3-packaging python3-pbcommand python3-pbcore python3-pil python3-platformdirs python3-pooch python3-pybigwig python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-tqdm python3-uharfbuzz python3-urllib3 python3-yaml python3.14 python3.14-minimal readline-common sgml-base shared-mime-info sse4.2-support w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core Suggested packages: binutils-doc gprofng-gui binutils-gold cpp-doc gcc-16-locales cpp-16-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-16-multilib gcc-16-doc gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-16-multilib gdb-x86-64-linux-gnu apache2 | lighttpd | httpd libc-devtools glibc-doc gdbm-l10n low-memory-monitor gnutls-bin gpm krb5-doc krb5-user liblcms2-utils sensible-utils libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libstdc++-16-doc man-browser libjs-mathjax-doc npm perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-igraph raxml samtools t-coffee wise python-charset-normalizer-doc python-h5py-doc gfortran python-numpy-doc python3-dev python3-pytest python-pbcore-doc python-pil-doc python3-paramiko python3-xxhash pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3-brotli python3.14-venv python3.14-doc binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: python3-biopython The following NEW packages will be installed: bash-completion binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu curl fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu isa-support javascript-common kineticstools-data krb5-locales libabsl20260526 libada-url0-3 libaom3 libasan8 libatomic1 libavif16 libbigwig0t64 libbinutils libblas3 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcares2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdav1d7 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgnutls30t64 libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz-subset0 libharfbuzz0b libhdf5-320 libhdf5-hl-320 libhdr-histogram6 libhts3t64 libhtscodecs2 libhwasan0 libicu78 libidn2-0 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllhttp9.4 liblmdb0 liblsan0 liblzf1 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncbi-vdb3 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnode137 libopenjp2-7 libp11-kit0 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.8 libreadline8t64 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe3 libsharpyuv0 libsimdjson33 libsimdutf35 libsqlite3-0 libssh2-1t64 libstdc++-16-dev libsvtav1enc4 libsz2 libtasn1-6 libtiff6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2-16 libxrender1 libyaml-0-2 libyuv0 linux-libc-dev manpages manpages-dev media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase node-acorn node-balanced-match node-brace-expansion node-commander node-corepack node-debug node-llhttp node-lru-cache node-mathjax-full node-minimatch node-mj-context-menu node-ms node-semver node-speech-rule-engine node-undici node-xmldom node-xtend nodejs nodejs-doc openssl perl perl-modules-5.42 publicsuffix python-biopython-doc python3 python3-avro python3-biopython python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-decorator python3-freetype python3-h5py python3-h5py-serial python3-idna python3-iso8601 python3-kineticstools python3-minimal python3-numpy python3-numpy-dev python3-olefile python3-packaging python3-pbcommand python3-pbcore python3-pil python3-platformdirs python3-pooch python3-pybigwig python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-tqdm python3-uharfbuzz python3-urllib3 python3-yaml python3.14 python3.14-minimal readline-common sgml-base shared-mime-info sse4.2-support w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core 0 upgraded, 240 newly installed, 0 to remove and 0 not upgraded. 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kB] Get:88 http://deb.debian.org/debian forky/main amd64 libhwasan0 amd64 16.2.0-3 [1580 kB] Get:89 http://deb.debian.org/debian forky/main amd64 libquadmath0 amd64 16.2.0-3 [148 kB] Get:90 http://deb.debian.org/debian forky/main amd64 libgcc-16-dev amd64 16.2.0-3 [2782 kB] Get:91 http://deb.debian.org/debian forky/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-3 [26.6 MB] Get:92 http://deb.debian.org/debian forky/main amd64 gcc-16 amd64 16.2.0-3 [538 kB] Get:93 http://deb.debian.org/debian forky/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:94 http://deb.debian.org/debian forky/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:95 http://deb.debian.org/debian forky/main amd64 libc-dev-bin amd64 2.43-7 [39.7 kB] Get:96 http://deb.debian.org/debian forky/main amd64 linux-libc-dev all 7.2.12-1 [2029 kB] Get:97 http://deb.debian.org/debian forky/main amd64 libc6-dev amd64 2.43-7 [2069 kB] Get:98 http://deb.debian.org/debian forky/main amd64 libstdc++-16-dev amd64 16.2.0-3 [2755 kB] Get:99 http://deb.debian.org/debian forky/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-3 [15.1 MB] Get:100 http://deb.debian.org/debian forky/main amd64 g++-16 amd64 16.2.0-3 [35.4 kB] Get:101 http://deb.debian.org/debian forky/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:102 http://deb.debian.org/debian forky/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:103 http://deb.debian.org/debian forky/main amd64 javascript-common all 12+nmu1 [4864 B] Get:104 http://deb.debian.org/debian forky/main amd64 kineticstools-data all 0.6.1+git20220223.1326a4d+dfsg-7 [21.7 MB] Get:105 http://deb.debian.org/debian forky/main amd64 libabsl20260526 amd64 20260526.0-2+b1 [584 kB] Get:106 http://deb.debian.org/debian forky/main amd64 libsimdutf35 amd64 9.3.0+really9.1.2-1 [150 kB] Get:107 http://deb.debian.org/debian forky/main amd64 libada-url0-3 amd64 3.4.4-1+b1 [217 kB] Get:108 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.14.1-1 [1923 kB] Get:109 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.4-1 [583 kB] Get:110 http://deb.debian.org/debian forky/main amd64 libgav1-2 amd64 0.20.0-2+b2 [372 kB] Get:111 http://deb.debian.org/debian forky/main amd64 librav1e0.8 amd64 0.8.1-12 [970 kB] Get:112 http://deb.debian.org/debian forky/main amd64 libsvtav1enc4 amd64 4.2.0+dfsg-3 [2492 kB] Get:113 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:114 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1974.20261008-1 [195 kB] Get:115 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.4.2-1 [147 kB] Get:116 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:117 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:118 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:119 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:120 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls amd64 8.22.0-1 [457 kB] Get:121 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.22.0-1 [17.8 kB] Get:122 http://deb.debian.org/debian forky/main amd64 libbigwig0t64 amd64 0.4.8+dfsg-3+b1 [29.8 kB] Get:123 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:124 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:125 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:126 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:127 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:128 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:129 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:130 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:131 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:132 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:133 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:134 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:135 http://deb.debian.org/debian forky/main amd64 libcares2 amd64 1.34.8-1 [100 kB] Get:136 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:137 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:138 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.90.1-2 [1620 kB] Get:139 http://deb.debian.org/debian forky/main amd64 libglib2.0-data all 2.90.1-2 [1329 kB] Get:140 http://deb.debian.org/debian forky/main amd64 libgpm2 amd64 1.20.7-12+b2 [13.9 kB] Get:141 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:142 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:143 http://deb.debian.org/debian forky/main amd64 libharfbuzz-subset0 amd64 12.3.2-2+b2 [574 kB] Get:144 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:145 http://deb.debian.org/debian forky/main amd64 libhdf5-320 amd64 2.2.0+repack-5 [2177 kB] Get:146 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-320 amd64 2.2.0+repack-5 [82.0 kB] Get:147 http://deb.debian.org/debian forky/main amd64 libhdr-histogram6 amd64 0.11.8-4+b2 [20.6 kB] Get:148 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.7-1 [102 kB] Get:149 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.24-3 [506 kB] Get:150 http://deb.debian.org/debian forky/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:151 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.1-1+b2 [255 kB] Get:152 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:153 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:154 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 9.1.0-9 [46.3 kB] Get:155 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:156 http://deb.debian.org/debian forky/main amd64 libldap-common all 2.6.14+dfsg-2 [29.5 kB] Get:157 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:158 http://deb.debian.org/debian forky/main amd64 libllhttp9.4 amd64 9.4.3+~cs12.11.9-2 [30.5 kB] Get:159 http://deb.debian.org/debian forky/main amd64 liblmdb0 amd64 0.9.35-1 [45.8 kB] Get:160 http://deb.debian.org/debian forky/main amd64 liblzf1 amd64 3.6-4+b4 [10.1 kB] Get:161 http://deb.debian.org/debian forky/main amd64 libmbedcrypto16 amd64 3.6.7-3 [367 kB] Get:162 http://deb.debian.org/debian forky/main amd64 libmbedx509-7 amd64 3.6.7-3 [157 kB] Get:163 http://deb.debian.org/debian forky/main amd64 libmbedtls21 amd64 3.6.7-3 [250 kB] Get:164 http://deb.debian.org/debian forky/main amd64 ncbi-vdb-data all 3.4.1+dfsg-1 [86.1 kB] Get:165 http://deb.debian.org/debian forky/main amd64 libncbi-vdb3 amd64 3.4.1+dfsg-1 [1260 kB] Get:166 http://deb.debian.org/debian forky/main amd64 libsimdjson33 amd64 4.6.11-1 [82.6 kB] Get:167 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.53.0-1 [162 kB] Get:168 http://deb.debian.org/debian forky/main amd64 node-corepack all 0.35.0-2 [106 kB] Get:169 http://deb.debian.org/debian forky/main amd64 nodejs amd64 24.21.0+dfsg+~cs24.13.4-1 [392 kB] Get:170 http://deb.debian.org/debian forky/main amd64 node-xtend all 4.0.2-3 [3932 B] Get:171 http://deb.debian.org/debian forky/main amd64 node-acorn all 8.17.0+ds+~cs28.27.25-1 [140 kB] Get:172 http://deb.debian.org/debian forky/main amd64 node-balanced-match all 2.0.0-1 [4872 B] Get:173 http://deb.debian.org/debian forky/main amd64 node-brace-expansion all 2.1.7+~1.1.2-1 [10.7 kB] Get:174 http://deb.debian.org/debian forky/main amd64 node-minimatch all 9.0.7-2 [53.0 kB] Get:175 http://deb.debian.org/debian forky/main amd64 node-ms all 2.1.3+~cs0.7.31-3 [5648 B] Get:176 http://deb.debian.org/debian forky/main amd64 node-debug all 4.4.3+~4.1.13-1 [16.3 kB] Get:177 http://deb.debian.org/debian forky/main amd64 node-lru-cache all 11.2.7-7 [64.0 kB] Get:178 http://deb.debian.org/debian forky/main amd64 node-semver all 7.7.4+~cs9.7.4-2 [52.7 kB] Get:179 http://deb.debian.org/debian forky/main amd64 node-llhttp all 9.4.3+~cs12.11.9-2 [158 kB] Get:180 http://deb.debian.org/debian forky/main amd64 node-undici all 8.10.2+dfsg+~cs3.2.2-1 [510 kB] Get:181 http://deb.debian.org/debian forky/main amd64 libnode137 amd64 24.21.0+dfsg+~cs24.13.4-1 [16.4 MB] Get:182 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.4-1.1 [205 kB] Get:183 http://deb.debian.org/debian forky/main amd64 libpython3.14 amd64 3.14.8-1 [2528 kB] Get:184 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:185 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.5-1 [13.6 kB] Get:186 http://deb.debian.org/debian forky/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-12 [66.5 kB] Get:187 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.6.0-0.1 [116 kB] Get:188 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:189 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:190 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.6.0-0.1 [114 kB] Get:191 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.6.0-0.1 [127 kB] Get:192 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.4+dfsg-1+b1 [684 kB] Get:193 http://deb.debian.org/debian forky/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:194 http://deb.debian.org/debian forky/main amd64 manpages-dev all 6.19-3 [2240 kB] Get:195 http://deb.debian.org/debian forky/main amd64 ncbi-data all 6.1.20170106+dfsg2-7 [3540 kB] Get:196 http://deb.debian.org/debian forky/main amd64 ncbi-blast+ amd64 2.17.0+ds-7 [17.0 MB] Get:197 http://deb.debian.org/debian forky/main amd64 node-commander all 14.0.3-7 [76.8 kB] Get:198 http://deb.debian.org/debian forky/main amd64 node-mj-context-menu all 0.9.1+ds-3 [70.3 kB] Get:199 http://deb.debian.org/debian forky/main amd64 node-xmldom all 0.9.12-1 [93.1 kB] Get:200 http://deb.debian.org/debian forky/main amd64 node-speech-rule-engine all 4.1.4+~0.1.31-2 [564 kB] Get:201 http://deb.debian.org/debian forky/main amd64 node-mathjax-full all 3.2.2+~cs4.2.1-6 [3671 kB] Get:202 http://deb.debian.org/debian forky/main amd64 nodejs-doc all 24.21.0+dfsg+~cs24.13.4-1 [7583 kB] Get:203 http://deb.debian.org/debian forky/main amd64 publicsuffix all 20261007.0728-1 [330 kB] Get:204 http://deb.debian.org/debian forky/main amd64 python-biopython-doc all 1.88+dfsg-2 [18.1 MB] Get:205 http://deb.debian.org/debian forky/main amd64 python3-avro all 1.12.1+dfsg-1 [73.7 kB] Get:206 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.7-2+b1 [190 kB] Get:207 http://deb.debian.org/debian forky/main amd64 python3-pil amd64 12.3.0-1+b1 [555 kB] Get:208 http://deb.debian.org/debian forky/main amd64 python3-cairo amd64 1.29.1-1+b1 [117 kB] Get:209 http://deb.debian.org/debian forky/main amd64 python3-freetype all 2.5.1-3 [88.9 kB] Get:210 http://deb.debian.org/debian forky/main amd64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get:211 http://deb.debian.org/debian forky/main amd64 python3-uharfbuzz amd64 0.53.3-1+b1 [219 kB] Get:212 http://deb.debian.org/debian forky/main amd64 python3-reportlab all 5.0.0-4 [823 kB] Get:213 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:214 http://deb.debian.org/debian forky/main amd64 xml-core all 0.21 [19.0 kB] Get:215 http://deb.debian.org/debian forky/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:216 http://deb.debian.org/debian forky/main amd64 python3-biopython amd64 1.88+dfsg-2+b1 [1619 kB] Get:217 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2026.10.19+ds-1 [9948 B] Get:218 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:219 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:220 http://deb.debian.org/debian forky/main amd64 python3-h5py-serial amd64 3.16.0-7 [1057 kB] Get:221 http://deb.debian.org/debian forky/main amd64 python3-h5py all 3.16.0-7 [15.1 kB] Get:222 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.20-1 [45.8 kB] Get:223 http://deb.debian.org/debian forky/main amd64 python3-iso8601 all 2.1.0-4 [11.3 kB] Get:224 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2026.5-1 [34.5 kB] Get:225 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.8.0-2 [125 kB] Get:226 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:227 http://deb.debian.org/debian forky/main amd64 python3-pbcommand all 2.1.1+git20231020.28d1635-2 [103 kB] Get:228 http://deb.debian.org/debian forky/main amd64 python3-pysam amd64 0.24.1+ds-2 [1957 kB] Get:229 http://deb.debian.org/debian forky/main amd64 python3-pbcore all 2.6.0+dfsg-1 [2838 kB] Get:230 http://deb.debian.org/debian forky/main amd64 python3-pybigwig amd64 0.3.25+dfsg-1+b1 [41.2 kB] Get:231 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.17.1-5+b1 [16.0 MB] Get:232 http://deb.debian.org/debian forky/main amd64 python3-kineticstools amd64 0.6.1+git20220223.1326a4d+dfsg-7+b1 [46.2 kB] Get:233 http://deb.debian.org/debian forky/main amd64 python3-olefile all 0.47-1 [39.3 kB] Get:234 http://deb.debian.org/debian forky/main amd64 python3-packaging all 26.2-3 [84.3 kB] Get:235 http://deb.debian.org/debian forky/main amd64 python3-platformdirs all 4.10.0-1 [18.3 kB] Get:236 http://deb.debian.org/debian forky/main amd64 python3-pooch all 1.9.0-2 [62.8 kB] Get:237 http://deb.debian.org/debian forky/main amd64 python3-tqdm all 4.70.1-1 [91.3 kB] Get:238 http://deb.debian.org/debian forky/main amd64 python3-yaml amd64 6.0.3-1+b1 [138 kB] Get:239 http://deb.debian.org/debian forky/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:240 http://deb.debian.org/debian forky/main amd64 xdg-user-dirs amd64 0.20-1 [41.9 kB] Preconfiguring packages ... Fetched 292 MB in 2s (164 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4952 files and directories currently installed.) Preparing to unpack .../libexpat1_2.9.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.9.0-1) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.8-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.8-1) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../python3.14-minimal_3.14.8-1_amd64.deb ... Unpacking python3.14-minimal (3.14.8-1) ... Setting up libpython3.14-minimal:amd64 (3.14.8-1) ... Setting up libexpat1:amd64 (2.9.0-1) ... Setting up python3.14-minimal (3.14.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5308 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.14.7-3_amd64.deb ... Unpacking python3-minimal (3.14.7-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../08-libpython3.14-stdlib_3.14.8-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.8-1) ... 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Preparing to unpack .../208-python3-pybigwig_0.3.25+dfsg-1+b1_amd64.deb ... Unpacking python3-pybigwig (0.3.25+dfsg-1+b1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../209-python3-scipy_1.17.1-5+b1_amd64.deb ... Unpacking python3-scipy (1.17.1-5+b1) ... Selecting previously unselected package python3-kineticstools. Preparing to unpack .../210-python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-7+b1_amd64.deb ... Unpacking python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-7+b1) ... Selecting previously unselected package python3-olefile. Preparing to unpack .../211-python3-olefile_0.47-1_all.deb ... Unpacking python3-olefile (0.47-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../212-python3-packaging_26.2-3_all.deb ... Unpacking python3-packaging (26.2-3) ... Selecting previously unselected package python3-platformdirs. Preparing to unpack .../213-python3-platformdirs_4.10.0-1_all.deb ... Unpacking python3-platformdirs (4.10.0-1) ... Selecting previously unselected package python3-pooch. Preparing to unpack .../214-python3-pooch_1.9.0-2_all.deb ... Unpacking python3-pooch (1.9.0-2) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../215-python3-tqdm_4.70.1-1_all.deb ... Unpacking python3-tqdm (4.70.1-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../216-python3-yaml_6.0.3-1+b1_amd64.deb ... Unpacking python3-yaml (6.0.3-1+b1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../217-shared-mime-info_2.4-5+b3_amd64.deb ... Unpacking shared-mime-info (2.4-5+b3) ... Selecting previously unselected package xdg-user-dirs. Preparing to unpack .../218-xdg-user-dirs_0.20-1_amd64.deb ... Unpacking xdg-user-dirs (0.20-1) ... Setting up libhtscodecs2:amd64 (1.6.7-1) ... Setting up media-types (14.0.0) ... Setting up liblmdb0:amd64 (0.9.35-1) ... Setting up javascript-common (12+nmu1) ... Setting up libgraphite2-3:amd64 (1.3.15-2) ... Setting up liblcms2-2:amd64 (2.19.1-1) ... Setting up ncbi-data (6.1.20170106+dfsg2-7) ... Setting up libpixman-1-0:amd64 (0.46.4-1+b2) ... Setting up libsharpyuv0:amd64 (1.6.0-0.1) ... Setting up libaom3:amd64 (3.14.1-1) ... Setting up node-xmldom (0.9.12-1) ... Setting up libxau6:amd64 (1:1.0.11-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.5-2+b1) ... Setting up node-lru-cache (11.2.7-7) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libxcb1:amd64 (1.17.0-2+b2) ... Setting up libgpm2:amd64 (1.20.7-12+b2) ... Setting up liblerc4:amd64 (4.2.0+ds-1) ... Setting up libllhttp9.4:amd64 (9.4.3+~cs12.11.9-2) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up xdg-user-dirs (0.20-1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up manpages (6.19-3) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1+b1) ... Setting up libsimdutf35:amd64 (9.3.0+really9.1.2-1) ... Setting up libbrotli1:amd64 (1.2.0-4+b2) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libsasl2-modules:amd64 (2.1.28+dfsg1-12) ... Setting up libuv1t64:amd64 (1.53.0-1) ... Setting up binutils-common:amd64 (2.47.50.20261021-1) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libsframe3:amd64 (2.47.50.20261021-1) ... Setting up libdeflate0:amd64 (1.25-1) ... Setting up linux-libc-dev (7.2.12-1) ... Setting up libctf-nobfd0:amd64 (2.47.50.20261021-1) ... Setting up libqhull-r8.0:amd64 (2020.2-9) ... Setting up krb5-locales (1.22.1-3) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b2) ... Setting up node-mj-context-menu (0.9.1+ds-3) ... Setting up libcom-err2:amd64 (1.47.4-1+b2) ... Setting up kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-7) ... Setting up libgomp1:amd64 (16.2.0-3) ... Setting up libldap-common (2.6.14+dfsg-2) ... Setting up libjbig0:amd64 (2.1-6.1+b3) ... Setting up libhdr-histogram6:amd64 (0.11.8-4+b2) ... Setting up libjansson4:amd64 (2.15.1-1) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up librav1e0.8:amd64 (0.8.1-12) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Setting up libicu78:amd64 (78.3-2) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b3) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libglib2.0-data (2.90.1-2) ... Setting up libabsl20260526:amd64 (20260526.0-2+b1) ... Setting up libjpeg62-turbo:amd64 (1:3.1.3-4) ... Setting up libx11-data (2:1.8.13-1) ... Setting up libmpfr6:amd64 (4.2.2-3) ... Setting up node-balanced-match (2.0.0-1) ... Setting up node-brace-expansion (2.1.7+~1.1.2-1) ... Setting up bash-completion (1:2.16.0-8) ... Setting up liblzf1:amd64 (3.6-4+b4) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-5+b1) ... Setting up libquadmath0:amd64 (16.2.0-3) ... Setting up libsimdjson33:amd64 (4.6.11-1) ... Setting up libimagequant0:amd64 (4.4.1-1+b2) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up fonts-dejavu-mono (2.37-9) ... Setting up libpng16-16t64:amd64 (1.6.59-1) ... Setting up libcares2:amd64 (1.34.8-1) ... Setting up libmpc3:amd64 (1.3.1-3) ... Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-5+b1) ... Setting up libatomic1:amd64 (16.2.0-3) ... Setting up fonts-dejavu-core (2.37-9) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libsvtav1enc4:amd64 (4.2.0+dfsg-3) ... Setting up libjs-sphinxdoc (9.1.0-9) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Setting up libgfortran5:amd64 (16.2.0-3) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up nodejs-doc (24.21.0+dfsg+~cs24.13.4-1) ... Setting up libwebp7:amd64 (1.6.0-0.1) ... Setting up libubsan1:amd64 (16.2.0-3) ... Setting up libgav1-2:amd64 (0.20.0-2+b2) ... Setting up node-commander (14.0.3-7) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up fonts-dejavu-extra (2.37-9) ... Setting up libdav1d7:amd64 (1.5.4-1) ... Setting up libhwasan0:amd64 (16.2.0-3) ... Setting up libtiff6:amd64 (4.7.2-1) ... Setting up libasan8:amd64 (16.2.0-3) ... Setting up sse4.2-support (34) ... Setting up libtasn1-6:amd64 (4.21.0-2+b1) ... Setting up libada-url0-3:amd64 (3.4.4-1+b1) ... Setting up libopenjp2-7:amd64 (2.5.4-1.1) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up sgml-base (1.31+nmu1) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up node-minimatch (9.0.7-2) ... Setting up libmbedcrypto16:amd64 (3.6.7-3) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up libtsan2:amd64 (16.2.0-3) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up libbinutils:amd64 (2.47.50.20261021-1) ... Setting up perl-modules-5.42 (5.42.3-1) ... Setting up node-xtend (4.0.2-3) ... Setting up libisl23:amd64 (0.28-1) ... Setting up libc-dev-bin (2.43-7) ... Setting up openssl (3.6.5-1) ... Setting up libwebpmux3:amd64 (1.6.0-0.1) ... Setting up libyuv0:amd64 (0.0.1974.20261008-1) ... Setting up readline-common (8.3-4) ... Setting up publicsuffix (20261007.0728-1) ... Setting up libcc1-0:amd64 (16.2.0-3) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up liblsan0:amd64 (16.2.0-3) ... Setting up libsz2:amd64 (1.1.7-1) ... Setting up libitm1:amd64 (16.2.0-3) ... Setting up libctf0:amd64 (2.47.50.20261021-1) ... Setting up manpages-dev (6.19-3) ... Setting up libavif16:amd64 (1.4.2-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up libgcc-16-dev:amd64 (16.2.0-3) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libwebpdemux2:amd64 (1.6.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 120 added, 0 removed; done. Setting up perl (5.42.3-1) ... Setting up libglib2.0-0t64:amd64 (2.90.1-2) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.47.50.20261021-1) ... Setting up libmbedx509-7:amd64 (3.6.7-3) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-3) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libmbedtls21:amd64 (3.6.7-3) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up xml-core (0.21) ... Setting up libc6-dev:amd64 (2.43-7) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up cpp-16-x86-64-linux-gnu (16.2.0-3) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libhdf5-320:amd64 (2.2.0+repack-5) ... Setting up binutils-x86-64-linux-gnu (2.47.50.20261021-1) ... Setting up cpp-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up libpython3.14-stdlib:amd64 (3.14.8-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up gcc-16-x86-64-linux-gnu (16.2.0-3) ... Setting up binutils (2.47.50.20261021-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up libraqm0:amd64 (0.10.5-1) ... Setting up libstdc++-16-dev:amd64 (16.2.0-3) ... Setting up g++-16-x86-64-linux-gnu (16.2.0-3) ... Setting up libhdf5-hl-320:amd64 (2.2.0+repack-5) ... Setting up libpython3.14:amd64 (3.14.8-1) ... Setting up libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Setting up cpp-16 (16.2.0-3) ... Setting up python3.14 (3.14.8-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up libcurl4-gnutls:amd64 (8.22.0-1) ... Setting up gcc-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up libcurl3t64-gnutls:amd64 (8.22.0-1) ... Setting up gcc-16 (16.2.0-3) ... Setting up python3 (3.14.7-3) ... Setting up fonts-urw-base35 (20200910-9) ... Setting up python3-freetype (2.5.1-3) ... Setting up python3-platformdirs (4.10.0-1) ... Setting up python3-pil:amd64 (12.3.0-1+b1) ... Setting up python3-decorator (5.3.1-1) ... Setting up python3-packaging (26.2-3) ... Setting up python3-iso8601 (2.1.0-4) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2026.10.19+ds-1) ... Setting up python3-avro (1.12.1+dfsg-1) ... Setting up python3-idna (3.20-1) ... Setting up python3-uharfbuzz (0.53.3-1+b1) ... Setting up python3-numpy (1:2.4.6+ds-5+b1) ... Setting up python3-urllib3 (2.8.0-2) ... Setting up g++-16 (16.2.0-3) ... Setting up cpp (4:16.1.0-3) ... Setting up g++-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libhts3t64:amd64 (1.24-3) ... Setting up ncbi-vdb-data (3.4.1+dfsg-1) ... Setting up libbigwig0t64:amd64 (0.4.8+dfsg-3+b1) ... Setting up curl (8.22.0-1) ... Setting up python3-pysam (0.24.1+ds-2) ... Setting up python3-scipy (1.17.1-5+b1) ... Setting up python3-cairo (1.29.1-1+b1) ... Setting up python3-charset-normalizer (3.4.7-2+b1) ... Setting up python3-olefile (0.47-1) ... Setting up python3-tqdm (4.70.1-1) ... Setting up libncbi-vdb3:amd64 (3.4.1+dfsg-1) ... Setting up python3-h5py-serial (3.16.0-7) ... Setting up python3-yaml (6.0.3-1+b1) ... Setting up python3-pytz (2026.5-1) ... Setting up gcc (4:16.1.0-3) ... Setting up ncbi-blast+ (2.17.0+ds-7) ... Setting up python3-rlpycairo (0.3.0-4) ... Setting up python3-requests (2.34.2-1) ... Setting up python3-h5py (3.16.0-7) ... Setting up python3-pbcommand (2.1.1+git20231020.28d1635-2) ... Setting up python3-pybigwig (0.3.25+dfsg-1+b1) ... Setting up python3-reportlab (5.0.0-4) ... Setting up g++ (4:16.1.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-pooch (1.9.0-2) ... Setting up node-corepack (0.35.0-2) ... Setting up libnode137:amd64 (24.21.0+dfsg+~cs24.13.4-1) ... Setting up nodejs (24.21.0+dfsg+~cs24.13.4-1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up node-speech-rule-engine (4.1.4+~0.1.31-2) ... Setting up node-acorn (8.17.0+ds+~cs28.27.25-1) ... Setting up node-mathjax-full (3.2.2+~cs4.2.1-6) ... Setting up node-ms (2.1.3+~cs0.7.31-3) ... Setting up node-semver (7.7.4+~cs9.7.4-2) ... Setting up node-debug (4.4.3+~4.1.13-1) ... Setting up node-llhttp (9.4.3+~cs12.11.9-2) ... Setting up node-undici (8.10.2+dfsg+~cs3.2.2-1) ... Setting up python-biopython-doc (1.88+dfsg-2) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.88+dfsg-2+b1) ... Setting up python3-pbcore (2.6.0+dfsg-1) ... Setting up python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-7+b1) ... Processing triggers for ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', '-y', 'install', 'python3-kineticstools=0.6.1+git20220223.1326a4d+dfsg-7+b1'] 1m15.9s INFO: Running scripts post_install 1m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_install_exceptions'] 1m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_install_exceptions'] 1m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'systemd-tmpfiles', '--cat-config'] 1m16.0s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 1m16.0s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'systemd-tmpfiles', '--cat-config'] 1m16.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 1m17.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 1m20.0s DEBUG: No broken symlinks as far as we can find. 1m21.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', '-ac', '--ignore-obsolete'] 1m24.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', '-ac', '--ignore-obsolete'] 1m24.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m25.0s DUMP: 0.17.5+b5 1m25.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m25.0s INFO: Running adequate version 0.17.5+b5 now. 1m25.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'python3-kineticstools'] 1m25.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'python3-kineticstools'] 1m25.0s INFO: Running scripts pre_remove 1m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_exceptions'] 1m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/pre_remove_exceptions'] 1m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m32.2s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bash-completion bash-completion 1:2.16.0-8 install ok installed binutils binutils 2.47.50.20261021-1 install ok installed binutils-common:amd64 binutils-common 2.47.50.20261021-1 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.47.50.20261021-1 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed ca-certificates ca-certificates 20260816+nmu1 install ok installed coreutils coreutils 9.10-1 install ok installed cpp cpp 4:16.1.0-3 install ok installed cpp-16 cpp-16 16.2.0-3 install ok installed cpp-16-x86-64-linux-gnu cpp-16-x86-64-linux-gnu 16.2.0-3 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:16.1.0-3 install ok installed curl curl 8.22.0-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-9 install ok installed g++ g++ 4:16.1.0-3 install ok installed g++-16 g++-16 16.2.0-3 install ok installed g++-16-x86-64-linux-gnu g++-16-x86-64-linux-gnu 16.2.0-3 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:16.1.0-3 install ok installed gcc gcc 4:16.1.0-3 install ok installed gcc-16 gcc-16 16.2.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu 16.2.0-3 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:16.1.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed isa-support:amd64 isa-support 34 install ok installed javascript-common javascript-common 12+nmu1 install ok installed kineticstools-data kineticstools-data 0.6.1+git20220223.1326a4d+dfsg-7 install ok installed krb5-locales krb5-locales 1.22.1-3 install ok installed libabsl20260526:amd64 libabsl20260526 20260526.0-2+b1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libada-url0-3:amd64 libada-url0-3 3.4.4-1+b1 install ok installed libaom3:amd64 libaom3 3.14.1-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libasan8:amd64 libasan8 16.2.0-3 install ok installed libatomic1:amd64 libatomic1 16.2.0-3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libavif16:amd64 libavif16 1.4.2-1 install ok installed libbigwig0t64:amd64 libbigwig0t64 0.4.8+dfsg-3+b1 install ok installed libbinutils:amd64 libbinutils 2.47.50.20261021-1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4+b2 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-dev-bin libc-dev-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libc6-dev:amd64 libc6-dev 2.43-7 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcares2:amd64 libcares2 1.34.8-1 install ok installed libcc1-0:amd64 libcc1-0 16.2.0-3 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b2 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.47.50.20261021-1 install ok installed libctf0:amd64 libctf0 2.47.50.20261021-1 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.22.0-1 install ok installed libcurl4-gnutls:amd64 libcurl4-gnutls 8.22.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.22.0-1 install ok installed libdav1d7:amd64 libdav1d7 1.5.4-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b3 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgav1-2:amd64 libgav1-2 0.20.0-2+b2 install ok installed libgcc-16-dev:amd64 libgcc-16-dev 16.2.0-3 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-3 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.90.1-2 install ok installed libglib2.0-data libglib2.0-data 2.90.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 16.2.0-3 install ok installed libgpm2:amd64 libgpm2 1.20.7-12+b2 install ok installed libgprofng0:amd64 libgprofng0 2.47.50.20261021-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.15-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libharfbuzz-subset0:amd64 libharfbuzz-subset0 12.3.2-2+b2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libhdf5-320:amd64 libhdf5-320 2.2.0+repack-5 install ok installed libhdf5-hl-320:amd64 libhdf5-hl-320 2.2.0+repack-5 install ok installed libhdr-histogram6:amd64 libhdr-histogram6 0.11.8-4+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhts3t64:amd64 libhts3t64 1.24-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.7-1 install ok installed libhwasan0:amd64 libhwasan0 16.2.0-3 install ok installed libicu78:amd64 libicu78 78.3-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libimagequant0:amd64 libimagequant0 4.4.1-1+b2 install ok installed libisl23:amd64 libisl23 0.28-1 install ok installed libitm1:amd64 libitm1 16.2.0-3 install ok installed libjansson4:amd64 libjansson4 2.15.1-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 9.1.0-9 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblcms2-2:amd64 liblcms2-2 2.19.1-1 install ok installed libldap-common libldap-common 2.6.14+dfsg-2 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed libllhttp9.4:amd64 libllhttp9.4 9.4.3+~cs12.11.9-2 install ok installed liblmdb0:amd64 liblmdb0 0.9.35-1 install ok installed liblsan0:amd64 liblsan0 16.2.0-3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzf1:amd64 liblzf1 3.6-4+b4 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.7-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.7-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.7-3 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-3 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.4.1+dfsg-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libnode137:amd64 libnode137 24.21.0+dfsg+~cs24.13.4-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.4-1.1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.59-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14:amd64 libpython3.14 3.14.8-1 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.8-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.8-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-9 install ok installed libquadmath0:amd64 libquadmath0 16.2.0-3 install ok installed libraqm0:amd64 libraqm0 0.10.5-1 install ok installed librav1e0.8:amd64 librav1e0.8 0.8.1-12 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-12 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg1-12 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-12 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsframe3:amd64 libsframe3 2.47.50.20261021-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.6.0-0.1 install ok installed libsimdjson33:amd64 libsimdjson33 4.6.11-1 install ok installed libsimdutf35:amd64 libsimdutf35 9.3.0+really9.1.2-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++-16-dev:amd64 libstdc++-16-dev 16.2.0-3 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsvtav1enc4:amd64 libsvtav1enc4 4.2.0+dfsg-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtsan2:amd64 libtsan2 16.2.0-3 install ok installed libubsan1:amd64 libubsan1 16.2.0-3 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libuv1t64:amd64 libuv1t64 1.53.0-1 install ok installed libwebp7:amd64 libwebp7 1.6.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.6.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.6.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libyuv0:amd64 libyuv0 0.0.1974.20261008-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed linux-libc-dev linux-libc-dev 7.2.12-1 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed manpages manpages 6.19-3 install ok installed manpages-dev manpages-dev 6.19-3 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncbi-blast+ ncbi-blast+ 2.17.0+ds-7 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-7 install ok installed ncbi-vdb-data ncbi-vdb-data 3.4.1+dfsg-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed node-acorn node-acorn 8.17.0+ds+~cs28.27.25-1 install ok installed node-balanced-match node-balanced-match 2.0.0-1 install ok installed node-brace-expansion node-brace-expansion 2.1.7+~1.1.2-1 install ok installed node-commander node-commander 14.0.3-7 install ok installed node-corepack node-corepack 0.35.0-2 install ok installed node-debug node-debug 4.4.3+~4.1.13-1 install ok installed node-llhttp node-llhttp 9.4.3+~cs12.11.9-2 install ok installed node-lru-cache node-lru-cache 11.2.7-7 install ok installed node-mathjax-full node-mathjax-full 3.2.2+~cs4.2.1-6 install ok installed node-minimatch node-minimatch 9.0.7-2 install ok installed node-mj-context-menu node-mj-context-menu 0.9.1+ds-3 install ok installed node-ms node-ms 2.1.3+~cs0.7.31-3 install ok installed node-semver node-semver 7.7.4+~cs9.7.4-2 install ok installed node-speech-rule-engine node-speech-rule-engine 4.1.4+~0.1.31-2 install ok installed node-undici node-undici 8.10.2+dfsg+~cs3.2.2-1 install ok installed node-xmldom node-xmldom 0.9.12-1 install ok installed node-xtend node-xtend 4.0.2-3 install ok installed nodejs nodejs 24.21.0+dfsg+~cs24.13.4-1 install ok installed nodejs-doc nodejs-doc 24.21.0+dfsg+~cs24.13.4-1 install ok installed openssl openssl 3.6.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed publicsuffix publicsuffix 20261007.0728-1 install ok installed python-biopython-doc python-biopython-doc 1.88+dfsg-2 install ok installed python3 python3 3.14.7-3 install ok installed python3-avro python3-avro 1.12.1+dfsg-1 install ok installed python3-biopython python3-biopython 1.88+dfsg-2+b1 install ok installed python3-cairo python3-cairo 1.29.1-1+b1 install ok installed python3-certifi python3-certifi 2026.10.19+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.7-2+b1 install ok installed python3-decorator python3-decorator 5.3.1-1 install ok installed python3-freetype python3-freetype 2.5.1-3 install ok installed python3-h5py python3-h5py 3.16.0-7 install ok installed python3-h5py-serial python3-h5py-serial 3.16.0-7 install ok installed python3-idna python3-idna 3.20-1 install ok installed python3-iso8601 python3-iso8601 2.1.0-4 install ok installed python3-kineticstools python3-kineticstools 0.6.1+git20220223.1326a4d+dfsg-7+b1 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3-numpy python3-numpy 1:2.4.6+ds-5+b1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.6+ds-5+b1 install ok installed python3-olefile python3-olefile 0.47-1 install ok installed python3-packaging python3-packaging 26.2-3 install ok installed python3-pbcommand python3-pbcommand 2.1.1+git20231020.28d1635-2 install ok installed python3-pbcore python3-pbcore 2.6.0+dfsg-1 install ok installed python3-pil:amd64 python3-pil 12.3.0-1+b1 install ok installed python3-platformdirs python3-platformdirs 4.10.0-1 install ok installed python3-pooch python3-pooch 1.9.0-2 install ok installed python3-pybigwig python3-pybigwig 0.3.25+dfsg-1+b1 install ok installed python3-pysam python3-pysam 0.24.1+ds-2 install ok installed python3-pytz python3-pytz 2026.5-1 install ok installed python3-reportlab python3-reportlab 5.0.0-4 install ok installed python3-requests python3-requests 2.34.2-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-4 install ok installed python3-scipy python3-scipy 1.17.1-5+b1 install ok installed python3-tqdm python3-tqdm 4.70.1-1 install ok installed python3-uharfbuzz python3-uharfbuzz 0.53.3-1+b1 install ok installed python3-urllib3 python3-urllib3 2.8.0-2 install ok installed python3-yaml python3-yaml 6.0.3-1+b1 install ok installed python3.14 python3.14 3.14.8-1 install ok installed python3.14-minimal python3.14-minimal 3.14.8-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed shared-mime-info shared-mime-info 2.4-5+b3 install ok installed sqv sqv 1.5.0-1 install ok installed sse4.2-support sse4.2-support 34 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-user-dirs xdg-user-dirs 0.20-1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.21 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 1m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', 'remove', '--allow-remove-essential', 'bash-completion', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'curl', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'isa-support:amd64', 'javascript-common', 'kineticstools-data', 'krb5-locales', 'libabsl20260526:amd64', 'libada-url0-3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbigwig0t64:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcares2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-320:amd64', 'libhdr-histogram6:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllhttp9.4:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnode137:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsimdjson33:amd64', 'libsimdutf35:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libsvtav1enc4:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtiff6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'node-acorn', 'node-balanced-match', 'node-brace-expansion', 'node-commander', 'node-corepack', 'node-debug', 'node-llhttp', 'node-lru-cache', 'node-mathjax-full', 'node-minimatch', 'node-mj-context-menu', 'node-ms', 'node-semver', 'node-speech-rule-engine', 'node-undici', 'node-xmldom', 'node-xtend', 'nodejs', 'nodejs-doc', 'openssl', 'perl', 'perl-modules-5.42', 'publicsuffix', 'python-biopython-doc', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-decorator', 'python3-freetype', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-olefile', 'python3-packaging', 'python3-pbcommand', 'python3-pbcore', 'python3-pil:amd64', 'python3-platformdirs', 'python3-pooch', 'python3-pybigwig', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-tqdm', 'python3-uharfbuzz', 'python3-urllib3', 'python3-yaml', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'shared-mime-info', 'sse4.2-support', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'python3-kineticstools'] 2m14.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: bash-completion binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu curl fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu isa-support javascript-common kineticstools-data krb5-locales libabsl20260526 libada-url0-3 libaom3 libasan8 libatomic1 libavif16 libbigwig0t64 libbinutils libblas3 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcares2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdav1d7 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgnutls30t64 libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz-subset0 libharfbuzz0b libhdf5-320 libhdf5-hl-320 libhdr-histogram6 libhts3t64 libhtscodecs2 libhwasan0 libicu78 libidn2-0 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllhttp9.4 liblmdb0 liblsan0 liblzf1 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncbi-vdb3 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnode137 libopenjp2-7 libp11-kit0 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.8 libreadline8t64 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe3 libsharpyuv0 libsimdjson33 libsimdutf35 libsqlite3-0 libssh2-1t64 libstdc++-16-dev libsvtav1enc4 libsz2 libtasn1-6 libtiff6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2-16 libxrender1 libyaml-0-2 libyuv0 linux-libc-dev manpages manpages-dev media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase node-acorn node-balanced-match node-brace-expansion node-commander node-corepack node-debug node-llhttp node-lru-cache node-mathjax-full node-minimatch node-mj-context-menu node-ms node-semver node-speech-rule-engine node-undici node-xmldom node-xtend nodejs nodejs-doc openssl perl perl-modules-5.42 publicsuffix python-biopython-doc python3 python3-avro python3-biopython python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-decorator python3-freetype python3-h5py python3-h5py-serial python3-idna python3-iso8601 python3-kineticstools python3-minimal python3-numpy python3-numpy-dev python3-olefile python3-packaging python3-pbcommand python3-pbcore python3-pil python3-platformdirs python3-pooch python3-pybigwig python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-tqdm python3-uharfbuzz python3-urllib3 python3-yaml python3.14 python3.14-minimal readline-common sgml-base shared-mime-info sse4.2-support w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 240 to remove and 0 not upgraded. After this operation, 1071 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 33418 files and directories currently installed.) Removing bash-completion (1:2.16.0-8) ... Removing g++ (4:16.1.0-3) ... Removing gcc (4:16.1.0-3) ... Removing g++-x86-64-linux-gnu (4:16.1.0-3) ... Removing gcc-x86-64-linux-gnu (4:16.1.0-3) ... Removing python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-7+b1) ... Removing python3-pbcommand (2.1.1+git20231020.28d1635-2) ... Removing python3-pooch (1.9.0-2) ... Removing python3-requests (2.34.2-1) ... Removing python3-certifi (2026.10.19+ds-1) ... Removing ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:16.1.0-3) ... Removing cpp-x86-64-linux-gnu (4:16.1.0-3) ... Removing curl (8.22.0-1) ... Removing python3-pbcore (2.6.0+dfsg-1) ... Removing python3-biopython (1.88+dfsg-2+b1) ... Removing python3-reportlab (5.0.0-4) ... Removing python3-rlpycairo (0.3.0-4) ... Removing python3-cairo (1.29.1-1+b1) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-extra (2.37-9) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing fonts-urw-base35 (20200910-9) ... Removing g++-16 (16.2.0-3) ... Removing g++-16-x86-64-linux-gnu (16.2.0-3) ... Removing ncbi-blast+ (2.17.0+ds-7) ... Removing sse4.2-support (34) ... Removing isa-support:amd64 (34) ... Removing javascript-common (12+nmu1) ... Removing kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-7) ... Removing krb5-locales (1.22.1-3) ... Removing python3-pil:amd64 (12.3.0-1+b1) ... Removing libavif16:amd64 (1.4.2-1) ... Removing libgav1-2:amd64 (0.20.0-2+b2) ... Removing libabsl20260526:amd64 (20260526.0-2+b1) ... Removing python-biopython-doc (1.88+dfsg-2) ... Removing node-mathjax-full (3.2.2+~cs4.2.1-6) ... Removing node-speech-rule-engine (4.1.4+~0.1.31-2) ... Removing libaom3:amd64 (3.14.1-1) ... Removing libstdc++-16-dev:amd64 (16.2.0-3) ... Removing shared-mime-info (2.4-5+b3) ... Removing python3-uharfbuzz (0.53.3-1+b1) ... Removing python3-pybigwig (0.3.25+dfsg-1+b1) ... Removing libbigwig0t64:amd64 (0.4.8+dfsg-3+b1) ... Removing python3-scipy (1.17.1-5+b1) ... Removing python3-h5py (3.16.0-7) ... Removing python3-h5py-serial (3.16.0-7) ... Removing python3-numpy (1:2.4.6+ds-5+b1) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing xfonts-utils (1:7.7+7) ... Removing libraqm0:amd64 (0.10.5-1) ... Removing libcurl4t64:amd64 (8.22.0-1) ... Removing libc6-dev:amd64 (2.43-7) ... Removing libc-dev-bin (2.43-7) ... Removing libcurl3t64-gnutls:amd64 (8.22.0-1) ... Removing python3-pysam (0.24.1+ds-2) ... Removing libhts3t64:amd64 (1.24-3) ... Removing libdav1d7:amd64 (1.5.4-1) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing python3-tqdm (4.70.1-1) ... Removing python3-yaml (6.0.3-1+b1) ... Removing python3-urllib3 (2.8.0-2) ... Removing libpython3.14:amd64 (3.14.8-1) ... Removing libfontenc1:amd64 (1:1.1.8-1+b3) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libgfortran5:amd64 (16.2.0-3) ... Removing libglib2.0-data (2.90.1-2) ... Removing libgpm2:amd64 (1.20.7-12+b2) ... Removing libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Removing libhdf5-hl-320:amd64 (2.2.0+repack-5) ... Removing libhdf5-320:amd64 (2.2.0+repack-5) ... Removing libhtscodecs2:amd64 (1.6.7-1) ... Removing libimagequant0:amd64 (4.4.1-1+b2) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libyuv0:amd64 (0.0.1974.20261008-1) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing libjs-sphinxdoc (9.1.0-9) ... Removing liblcms2-2:amd64 (2.19.1-1) ... Removing libldap-common (2.6.14+dfsg-2) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing liblmdb0:amd64 (0.9.35-1) ... Removing liblzf1:amd64 (3.6-4+b4) ... Removing libncbi-vdb3:amd64 (3.4.1+dfsg-1) ... Removing libmbedtls21:amd64 (3.6.7-3) ... Removing libmbedx509-7:amd64 (3.6.7-3) ... Removing libmbedcrypto16:amd64 (3.6.7-3) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libopenjp2-7:amd64 (2.5.4-1.1) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libqhull-r8.0:amd64 (2020.2-9) ... Removing librav1e0.8:amd64 (0.8.1-12) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg1-12) ... Removing libwebpmux3:amd64 (1.6.0-0.1) ... Removing libwebpdemux2:amd64 (1.6.0-0.1) ... Removing libwebp7:amd64 (1.6.0-0.1) ... Removing libsharpyuv0:amd64 (1.6.0-0.1) ... Removing libsvtav1enc4:amd64 (4.2.0+dfsg-3) ... Removing libsz2:amd64 (1.1.7-1) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1+b1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing linux-libc-dev (7.2.12-1) ... Removing manpages-dev (6.19-3) ... Removing manpages (6.19-3) ... Removing ncbi-data (6.1.20170106+dfsg2-7) ... Removing ncbi-vdb-data (3.4.1+dfsg-1) ... Removing node-commander (14.0.3-7) ... Removing node-mj-context-menu (0.9.1+ds-3) ... Removing node-xmldom (0.9.12-1) ... Removing nodejs-doc (24.21.0+dfsg+~cs24.13.4-1) ... Removing openssl (3.6.5-1) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing publicsuffix (20261007.0728-1) ... Removing python3-avro (1.12.1+dfsg-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.7-2+b1) ... Removing python3-decorator (5.3.1-1) ... Removing python3-freetype (2.5.1-3) ... Removing python3-idna (3.20-1) ... Removing python3-iso8601 (2.1.0-4) ... Removing python3-numpy-dev:amd64 (1:2.4.6+ds-5+b1) ... Removing python3-olefile (0.47-1) ... Removing python3-packaging (26.2-3) ... Removing python3-platformdirs (4.10.0-1) ... Removing python3-pytz (2026.5-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.21) ... Removing sgml-base (1.31+nmu1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.20-1) ... Removing gcc-16 (16.2.0-3) ... Removing binutils (2.47.50.20261021-1) ... Removing libgprofng0:amd64 (2.47.50.20261021-1) ... Removing gcc-16-x86-64-linux-gnu (16.2.0-3) ... Removing binutils-x86-64-linux-gnu (2.47.50.20261021-1) ... Removing libctf0:amd64 (2.47.50.20261021-1) ... Removing libbinutils:amd64 (2.47.50.20261021-1) ... Removing binutils-common:amd64 (2.47.50.20261021-1) ... Removing cpp-16 (16.2.0-3) ... Removing cpp-16-x86-64-linux-gnu (16.2.0-3) ... Removing libgcc-16-dev:amd64 (16.2.0-3) ... Removing libasan8:amd64 (16.2.0-3) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.90.1-2) ... Removing libatomic1:amd64 (16.2.0-3) ... Removing libfreetype6:amd64 (2.14.3+dfsg-3) ... Removing libcc1-0:amd64 (16.2.0-3) ... Removing libcurl4-gnutls:amd64 (8.22.0-1) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b2) ... Removing libctf-nobfd0:amd64 (2.47.50.20261021-1) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.8-1) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.8-1) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing libp11-kit0:amd64 (0.26.5-1) ... Removing libffi8:amd64 (3.8.0-2) ... Removing libgomp1:amd64 (16.2.0-3) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libhwasan0:amd64 (16.2.0-3) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libisl23:amd64 (0.28-1) ... Removing libitm1:amd64 (16.2.0-3) ... Removing libjansson4:amd64 (2.15.1-1) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing liblsan0:amd64 (16.2.0-3) ... Removing libmpc3:amd64 (1.3.1-3) ... Removing libmpfr6:amd64 (4.2.2-3) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libpng16-16t64:amd64 (1.6.59-1) ... Removing libpython3.14-minimal:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (16.2.0-3) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Removing libsframe3:amd64 (2.47.50.20261021-1) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libtsan2:amd64 (16.2.0-3) ... Removing libubsan1:amd64 (16.2.0-3) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing readline-common (8.3-4) ... Removing nodejs (24.21.0+dfsg+~cs24.13.4-1) ... Removing node-corepack (0.35.0-2) ... Removing libnode137:amd64 (24.21.0+dfsg+~cs24.13.4-1) ... Removing node-undici (8.10.2+dfsg+~cs3.2.2-1) ... Removing node-llhttp (9.4.3+~cs12.11.9-2) ... Removing node-semver (7.7.4+~cs9.7.4-2) ... Removing libada-url0-3:amd64 (3.4.4-1+b1) ... Removing libbrotli1:amd64 (1.2.0-4+b2) ... Removing libcares2:amd64 (1.34.8-1) ... Removing libhdr-histogram6:amd64 (0.11.8-4+b2) ... Removing libicu78:amd64 (78.3-2) ... Removing libllhttp9.4:amd64 (9.4.3+~cs12.11.9-2) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libsimdjson33:amd64 (4.6.11-1) ... Removing libsimdutf35:amd64 (9.3.0+really9.1.2-1) ... Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing libuv1t64:amd64 (1.53.0-1) ... Removing node-acorn (8.17.0+ds+~cs28.27.25-1) ... Removing node-minimatch (9.0.7-2) ... Removing node-brace-expansion (2.1.7+~1.1.2-1) ... Removing node-balanced-match (2.0.0-1) ... Removing node-debug (4.4.3+~4.1.13-1) ... Removing node-lru-cache (11.2.7-7) ... Removing node-ms (2.1.3+~cs0.7.31-3) ... Removing node-xtend (4.0.2-3) ... Processing triggers for libc-bin (2.43-7) ... 2m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', 'remove', '--allow-remove-essential', 'bash-completion', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'curl', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'isa-support:amd64', 'javascript-common', 'kineticstools-data', 'krb5-locales', 'libabsl20260526:amd64', 'libada-url0-3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbigwig0t64:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcares2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-320:amd64', 'libhdr-histogram6:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllhttp9.4:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnode137:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsimdjson33:amd64', 'libsimdutf35:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libsvtav1enc4:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtiff6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'node-acorn', 'node-balanced-match', 'node-brace-expansion', 'node-commander', 'node-corepack', 'node-debug', 'node-llhttp', 'node-lru-cache', 'node-mathjax-full', 'node-minimatch', 'node-mj-context-menu', 'node-ms', 'node-semver', 'node-speech-rule-engine', 'node-undici', 'node-xmldom', 'node-xtend', 'nodejs', 'nodejs-doc', 'openssl', 'perl', 'perl-modules-5.42', 'publicsuffix', 'python-biopython-doc', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-decorator', 'python3-freetype', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-olefile', 'python3-packaging', 'python3-pbcommand', 'python3-pbcore', 'python3-pil:amd64', 'python3-platformdirs', 'python3-pooch', 'python3-pybigwig', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-tqdm', 'python3-uharfbuzz', 'python3-urllib3', 'python3-yaml', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'shared-mime-info', 'sse4.2-support', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'python3-kineticstools'] 2m14.1s INFO: Running scripts post_remove 2m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_remove_exceptions'] 2m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_remove_exceptions'] 2m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg', '--purge', 'bash-completion', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'curl', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'isa-support:amd64', 'javascript-common', 'kineticstools-data', 'krb5-locales', 'libabsl20260526:amd64', 'libada-url0-3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbigwig0t64:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcares2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-320:amd64', 'libhdr-histogram6:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllhttp9.4:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnode137:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsimdjson33:amd64', 'libsimdutf35:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libsvtav1enc4:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtiff6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'node-acorn', 'node-balanced-match', 'node-brace-expansion', 'node-commander', 'node-corepack', 'node-debug', 'node-llhttp', 'node-lru-cache', 'node-mathjax-full', 'node-minimatch', 'node-mj-context-menu', 'node-ms', 'node-semver', 'node-speech-rule-engine', 'node-undici', 'node-xmldom', 'node-xtend', 'nodejs', 'nodejs-doc', 'openssl', 'perl', 'perl-modules-5.42', 'publicsuffix', 'python-biopython-doc', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-decorator', 'python3-freetype', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-olefile', 'python3-packaging', 'python3-pbcommand', 'python3-pbcore', 'python3-pil:amd64', 'python3-platformdirs', 'python3-pooch', 'python3-pybigwig', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-tqdm', 'python3-uharfbuzz', 'python3-urllib3', 'python3-yaml', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'shared-mime-info', 'sse4.2-support', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 2m14.8s DUMP: (Reading database ... 5038 files and directories currently installed.) Purging configuration files for bash-completion (1:2.16.0-8) ... Purging configuration files for binutils (2.47.50.20261021-1) ... Purging configuration files for binutils-common:amd64 (2.47.50.20261021-1) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which is not installed Purging configuration files for ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:16.1.0-3) ... dpkg: warning: ignoring request to remove cpp-16 which is not installed dpkg: warning: ignoring request to remove cpp-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove curl which is not installed Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-9) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which is not installed Purging configuration files for fonts-dejavu-mono (2.37-9) ... Purging configuration files for fonts-urw-base35 (20200910-9) ... dpkg: warning: ignoring request to remove g++ which is not installed dpkg: warning: ignoring request to remove g++-16 which is not installed dpkg: warning: ignoring request to remove g++-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc which is not installed dpkg: warning: ignoring request to remove gcc-16 which is not installed dpkg: warning: ignoring request to remove gcc-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove isa-support which is not installed Purging configuration files for javascript-common (12+nmu1) ... dpkg: warning: ignoring request to remove kineticstools-data which is not installed dpkg: warning: ignoring request to remove krb5-locales which is not installed dpkg: warning: ignoring request to remove libabsl20260526 which is not installed dpkg: warning: ignoring request to remove libada-url0-3 which is not installed dpkg: warning: ignoring request to remove libaom3 which is not installed dpkg: warning: ignoring request to remove libasan8 which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libavif16 which is not installed dpkg: warning: ignoring request to remove libbigwig0t64 which is not installed dpkg: warning: ignoring request to remove libbinutils which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libc-dev-bin which is not installed dpkg: warning: ignoring request to remove libc6-dev which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcares2 which is not installed dpkg: warning: ignoring request to remove libcc1-0 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libctf-nobfd0 which is not installed dpkg: warning: ignoring request to remove libctf0 which is not installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdav1d7 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfontenc1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgav1-2 which is not installed dpkg: warning: ignoring request to remove libgcc-16-dev which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.90.1-2) ... dpkg: warning: ignoring request to remove libglib2.0-data which is not installed dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgpm2 which is not installed dpkg: warning: ignoring request to remove libgprofng0 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libharfbuzz-subset0 which is not installed dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libhdf5-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-hl-320 which is not installed dpkg: warning: ignoring request to remove libhdr-histogram6 which is not installed dpkg: warning: ignoring request to remove libhts3t64 which is not installed dpkg: warning: ignoring request to remove libhtscodecs2 which is not installed dpkg: warning: ignoring request to remove libhwasan0 which is not installed dpkg: warning: ignoring request to remove libicu78 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libimagequant0 which is not installed dpkg: warning: ignoring request to remove libisl23 which is not installed dpkg: warning: ignoring request to remove libitm1 which is not installed dpkg: warning: ignoring request to remove libjansson4 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblcms2-2 which is not installed Purging configuration files for libldap-common (2.6.14+dfsg-2) ... dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove libllhttp9.4 which is not installed dpkg: warning: ignoring request to remove liblmdb0 which is not installed dpkg: warning: ignoring request to remove liblsan0 which is not installed dpkg: warning: ignoring request to remove liblzf1 which is not installed dpkg: warning: ignoring request to remove libmbedcrypto16 which is not installed dpkg: warning: ignoring request to remove libmbedtls21 which is not installed dpkg: warning: ignoring request to remove libmbedx509-7 which is not installed dpkg: warning: ignoring request to remove libmpc3 which is not installed dpkg: warning: ignoring request to remove libmpfr6 which is not installed dpkg: warning: ignoring request to remove libncbi-vdb3 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libnode137 which is not installed dpkg: warning: ignoring request to remove libopenjp2-7 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed dpkg: warning: ignoring request to remove libpython3.14 which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.8-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libqhull-r8.0 which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed dpkg: warning: ignoring request to remove libraqm0 which is not installed dpkg: warning: ignoring request to remove librav1e0.8 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed Purging configuration files for libsasl2-modules:amd64 (2.1.28+dfsg1-12) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsframe3 which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsimdjson33 which is not installed dpkg: warning: ignoring request to remove libsimdutf35 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libstdc++-16-dev which is not installed dpkg: warning: ignoring request to remove libsvtav1enc4 which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libwebpdemux2 which is not installed dpkg: warning: ignoring request to remove libwebpmux3 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed dpkg: warning: ignoring request to remove libyuv0 which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed dpkg: warning: ignoring request to remove manpages which is not installed dpkg: warning: ignoring request to remove manpages-dev which is not installed Purging configuration files for media-types (14.0.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which is not installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-7) ... Purging configuration files for ncbi-vdb-data (3.4.1+dfsg-1) ... Purging configuration files for netbase (6.6) ... dpkg: warning: ignoring request to remove node-acorn which is not installed dpkg: warning: ignoring request to remove node-balanced-match which is not installed dpkg: warning: ignoring request to remove node-brace-expansion which is not installed dpkg: warning: ignoring request to remove node-commander which is not installed dpkg: warning: ignoring request to remove node-corepack which is not installed dpkg: warning: ignoring request to remove node-debug which is not installed dpkg: warning: ignoring request to remove node-llhttp which is not installed dpkg: warning: ignoring request to remove node-lru-cache which is not installed dpkg: warning: ignoring request to remove node-mathjax-full which is not installed dpkg: warning: ignoring request to remove node-minimatch which is not installed dpkg: warning: ignoring request to remove node-mj-context-menu which is not installed dpkg: warning: ignoring request to remove node-ms which is not installed dpkg: warning: ignoring request to remove node-semver which is not installed dpkg: warning: ignoring request to remove node-speech-rule-engine which is not installed Purging configuration files for node-undici (8.10.2+dfsg+~cs3.2.2-1) ... dpkg: warning: ignoring request to remove node-xmldom which is not installed dpkg: warning: ignoring request to remove node-xtend which is not installed dpkg: warning: ignoring request to remove nodejs which is not installed dpkg: warning: ignoring request to remove nodejs-doc which is not installed Purging configuration files for openssl (3.6.5-1) ... Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed dpkg: warning: ignoring request to remove publicsuffix which is not installed dpkg: warning: ignoring request to remove python-biopython-doc which is not installed Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-avro which is not installed dpkg: warning: ignoring request to remove python3-biopython which is not installed dpkg: warning: ignoring request to remove python3-cairo which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-freetype which is not installed dpkg: warning: ignoring request to remove python3-h5py which is not installed dpkg: warning: ignoring request to remove python3-h5py-serial which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed dpkg: warning: ignoring request to remove python3-iso8601 which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed Purging configuration files for python3-numpy (1:2.4.6+ds-5+b1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-olefile which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-pbcommand which is not installed dpkg: warning: ignoring request to remove python3-pbcore which is not installed dpkg: warning: ignoring request to remove python3-pil which is not installed dpkg: warning: ignoring request to remove python3-platformdirs which is not installed dpkg: warning: ignoring request to remove python3-pooch which is not installed dpkg: warning: ignoring request to remove python3-pybigwig which is not installed dpkg: warning: ignoring request to remove python3-pysam which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-reportlab which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-rlpycairo which is not installed dpkg: warning: ignoring request to remove python3-scipy which is not installed dpkg: warning: ignoring request to remove python3-tqdm which is not installed dpkg: warning: ignoring request to remove python3-uharfbuzz which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3-yaml which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.8-1) ... Purging configuration files for readline-common (8.3-4) ... Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for shared-mime-info (2.4-5+b3) ... Purging configuration files for sse4.2-support (34) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+26) ... Purging configuration files for xdg-user-dirs (0.20-1) ... dpkg: warning: ignoring request to remove xfonts-encodings which is not installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.21) ... 2m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg', '--purge', 'bash-completion', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'curl', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'isa-support:amd64', 'javascript-common', 'kineticstools-data', 'krb5-locales', 'libabsl20260526:amd64', 'libada-url0-3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbigwig0t64:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcares2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-320:amd64', 'libhdr-histogram6:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllhttp9.4:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnode137:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsimdjson33:amd64', 'libsimdutf35:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libsvtav1enc4:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtiff6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'node-acorn', 'node-balanced-match', 'node-brace-expansion', 'node-commander', 'node-corepack', 'node-debug', 'node-llhttp', 'node-lru-cache', 'node-mathjax-full', 'node-minimatch', 'node-mj-context-menu', 'node-ms', 'node-semver', 'node-speech-rule-engine', 'node-undici', 'node-xmldom', 'node-xtend', 'nodejs', 'nodejs-doc', 'openssl', 'perl', 'perl-modules-5.42', 'publicsuffix', 'python-biopython-doc', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-decorator', 'python3-freetype', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-olefile', 'python3-packaging', 'python3-pbcommand', 'python3-pbcore', 'python3-pil:amd64', 'python3-platformdirs', 'python3-pooch', 'python3-pybigwig', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-tqdm', 'python3-uharfbuzz', 'python3-urllib3', 'python3-yaml', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'shared-mime-info', 'sse4.2-support', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 2m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg', '--purge', 'python3-kineticstools'] 2m14.8s DUMP: dpkg: warning: ignoring request to remove python3-kineticstools which is not installed 2m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg', '--purge', 'python3-kineticstools'] 2m14.8s INFO: Running scripts post_purge 2m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_purge_exceptions'] 2m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_purge_exceptions'] 2m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg', '--purge', '--pending'] 2m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg', '--purge', '--pending'] 2m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg', '--remove', '--pending'] 2m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg', '--remove', '--pending'] 2m14.8s INFO: Running scripts post_test 2m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_test_exceptions'] 2m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'tmp/scripts/post_test_exceptions'] 2m14.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 2m15.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 2m15.4s DEBUG: No broken symlinks as far as we can find. 2m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg-divert', '--list'] 2m15.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 2m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'dpkg-divert', '--list'] 2m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', 'clean'] 2m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2', 'apt-get', 'clean'] 2m15.5s DEBUG: Recording chroot state 2m16.2s INFO: PASS: Installation and purging test. 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/shm'] 2m16.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/shm'] 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/console'] 2m16.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/console'] 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/ptmx'] 2m16.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/ptmx'] 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/pts'] 2m16.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/dev/pts'] 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/proc'] 2m16.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2/proc'] 2m16.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 2m16.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpv_15x6v2'] 2m16.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpv_15x6v2 2m16.7s INFO: PASS: All tests. 2m16.7s INFO: piuparts run ends. ret=0 End: 2026-10-26 09:54:28 GMT