Start: 2023-01-12 11:04:31 GMT Package: ncbi-tools-x11 Source: ncbi-tools6 Version: 6.1.20120620-8 Installed-Size: 2797 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libvibrant6b (<< 6.1.20120620.1), libvibrant6b (>= 6.1.20120620), libc6 (>= 2.4) Suggests: blast2, ncbi-tools-bin Description: NCBI libraries for biology applications (X-based utilities) Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description-md5: d0eef02c68ea048bf0b8710f46afdc1e Tag: biology::peptidic, field::biology, field::biology:bioinformatics, field::biology:structural, implemented-in::c, interface::3d, interface::x11, network::client, role::program, science::visualisation, scope::utility, uitoolkit::motif, use::analysing, use::calculating, use::editing, use::searching, use::viewing, x11::application Section: science Priority: optional Filename: pool/main/n/ncbi-tools6/ncbi-tools-x11_6.1.20120620-8_amd64.deb Size: 1131148 MD5sum: 800b78a044deaf3f2529fdfda8020b07 SHA1: 655e4f3c257001f8eab0f8f6823a5f24c10d25c4 SHA256: 1efe89c91df5c6f2bbe2602dc8d423910373bf86f61812020e7c7dcce6369f2d Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt ncbi-tools-x11=6.1.20120620-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt ncbi-tools-x11=6.1.20120620-8 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpw1cfi2xd 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpw1cfi2xd 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpw1cfi2xd/tmp/scripts/ 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpw1cfi2xd/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'apt-get', 'update'] 0m3.2s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Ign http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main Translation-en Hit http://deb.debian.org jessie/main amd64 Packages Reading package lists... W: GPG error: http://deb.debian.org jessie Release: The following signatures were invalid: KEYEXPIRED 1668891673 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'apt-get', 'update'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s INFO: Running scripts post_setup 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_setup_dummy_users'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_setup_dummy_users'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_setup_forbid_home'] 0m4.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_setup_forbid_home'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.8s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! init-system-helpers ucf E: There are problems and -y was used without --force-yes 0m4.8s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd', 'tmp/scripts/post_setup_jessie-fake-essential'] *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! init-system-helpers ucf E: There are problems and -y was used without --force-yes 0m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/shm'] 0m5.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/shm'] 0m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/console'] 0m5.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/console'] 0m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/ptmx'] 0m5.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/ptmx'] 0m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/pts'] 0m5.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/dev/pts'] 0m5.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/proc'] 0m5.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd/proc'] 0m5.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd'] 0m5.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw1cfi2xd'] 0m5.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpw1cfi2xd 0m5.2s ERROR: piuparts run ends. ret=1 End: 2023-01-12 11:04:37 GMT