Start: 2022-10-30 08:42:47 GMT Package: gbrowse Version: 2.54+dfsg-3 Installed-Size: 6788 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, apache2 (>= 2.4) | httpd-cgi, bioperl (>= 1.6.901), libbio-graphics-perl (>= 2.31), libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype (>= 1.7), libjs-scriptaculous (>= 1.9), libvm-ec2-perl Recommends: apache2 (>= 2.4.9~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description: GMOD Generic Genome Browser Homepage: http://www.gbrowse.org/ Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.54+dfsg-3_all.deb Size: 2316210 MD5sum: 62f67794be0a2c3a08388c097d0c5166 SHA1: 7bfd1e82fa864c0ed5a34cb9c4bca0ec4a2e4ff1 SHA256: 5963306f61dc875fa3574496899133e6c3ef8745e5afd718d156b16a37a42cac Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt gbrowse=2.54+dfsg-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt gbrowse=2.54+dfsg-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2oq38esw 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2oq38esw 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m3.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m3.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/proc'] 0m3.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/proc'] 0m3.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/pts'] 0m3.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/pts'] 0m3.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/ptmx'] 0m3.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/ptmx'] 0m3.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/console'] 0m3.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/console'] 0m3.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/shm'] 0m3.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/shm'] 0m3.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m3.4s DEBUG: Created policy-rc.d and chmodded it. 0m3.4s DEBUG: Created resolv.conf. 0m3.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2oq38esw/tmp/scripts/ 0m3.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmp2oq38esw/tmp/scripts/ 0m3.4s INFO: Running scripts post_chroot_unpack 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', 'update'] 0m5.9s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', 'update'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.4s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.4s INFO: Running scripts post_setup 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_forbid_home'] 0m8.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_forbid_home'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m9.1s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (3056 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_minimize'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_minimize'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_zz_backports'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_setup_zz_backports'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', 'clean'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', 'clean'] 0m9.2s DEBUG: Recording chroot state 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg-divert', '--list'] 0m9.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg-divert', '--list'] 0m9.7s INFO: Running scripts is_testable 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/is_testable_uninstallable'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/is_testable_uninstallable'] 0m9.7s INFO: apt-cache does not know about any of the requested packages 0m9.7s INFO: Running scripts pre_test 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_test_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_test_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_test_root_password'] 0m9.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_test_root_password'] 0m9.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 0m10.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 0m10.8s DEBUG: No broken symlinks as far as we can find. 0m10.8s INFO: Running scripts pre_install 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_database-server'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_database-server'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_exceptions'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_exceptions'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_extras'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_extras'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 0m11.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 0m11.9s DEBUG: No broken symlinks as far as we can find. 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-cache', 'policy'] 0m13.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-cache', 'policy'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-cache', 'policy', 'gbrowse'] 0m13.0s DUMP: gbrowse: Installed: (none) Candidate: 2.54+dfsg-3 Version table: 2.54+dfsg-3 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-cache', 'policy', 'gbrowse'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', '-y', 'install', 'gbrowse=2.54+dfsg-3'] 1m26.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation ghostscript graphviz gsfonts hmmer ifupdown infernal iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libasync-interrupt-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap-ng0 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdns-export100 libencode-locale-perl liberror-perl libev-perl libexpat1 libexporter-tiny-perl libfcgi-perl libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libperl5.20 libpixman-1-0 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl librole-tiny-perl librtmp1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsm6 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libterm-readkey-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvm-ec2-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align wise wise-data x11-common xdg-user-dirs xml-core Suggested packages: www-browser apache2-doc apache2-suexec-pristine apache2-suexec-custom filo groff-base gmap paml phylip libvibrant6b ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 bowtie-examples clustalx seaview dbus-x11 emboss-doc emboss-test embassy gbrowse-data gbrowse-calign libfile-nfslock-perl ghostscript-x graphviz-doc hmmer-doc ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd libevent-perl libio-async-perl libpoe-perl libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gnutls-bin krb5-doc krb5-user libdata-dump-perl libhtml-element-extended-perl libjasper-runtime liblcms2-utils libmime-base64-perl uuid libscalar-number-perl libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libmime-lite-perl libnet-jabber-perl libdevel-stacktrace-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl mustang-testdata libterm-readline-gnu-perl libterm-readline-perl-perl make man-browser groff libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python-doc python-tk python2.7-doc binutils binfmt-support ri ruby-dev bundler sgml-base-doc sqlite3-doc openssl-blacklist boxshade t-coffee-examples fsa pymol rasmol wise-doc debhelper Recommended packages: libgd-gd2-perl libstorable-perl libarchive-tar-perl The following NEW packages will be installed: amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation gbrowse ghostscript graphviz gsfonts hmmer ifupdown infernal iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libasync-interrupt-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap-ng0 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdns-export100 libencode-locale-perl liberror-perl libev-perl libexpat1 libexporter-tiny-perl libfcgi-perl libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libperl5.20 libpixman-1-0 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl librole-tiny-perl librtmp1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsm6 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libterm-readkey-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvm-ec2-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align wise wise-data x11-common xdg-user-dirs xml-core 0 upgraded, 383 newly installed, 0 to remove and 0 not upgraded. Need to get 191 MB of archives. After this operation, 976 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:3 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:4 http://deb.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:5 http://deb.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:6 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:7 http://deb.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:8 http://deb.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:9 http://deb.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:10 http://deb.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:11 http://deb.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:12 http://deb.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:13 http://deb.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:14 http://deb.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:15 http://deb.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:16 http://deb.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:17 http://deb.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:18 http://deb.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:19 http://deb.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u4 [250 kB] Get:20 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:21 http://deb.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:22 http://deb.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:23 http://deb.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:24 http://deb.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:25 http://deb.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:26 http://deb.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:27 http://deb.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:28 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:29 http://deb.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:30 http://deb.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:31 http://deb.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:32 http://deb.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:33 http://deb.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:34 http://deb.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:35 http://deb.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:36 http://deb.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:37 http://deb.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:38 http://deb.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u12 [1042 kB] Get:39 http://deb.debian.org/debian/ jessie/main apache2-utils amd64 2.4.10-10+deb8u12 [196 kB] Get:40 http://deb.debian.org/debian/ jessie/main apache2-data all 2.4.10-10+deb8u12 [163 kB] Get:41 http://deb.debian.org/debian/ jessie/main apache2 amd64 2.4.10-10+deb8u12 [208 kB] Get:42 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:43 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:44 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:45 http://deb.debian.org/debian/ jessie/main fonts-liberation all 1.07.4-1 [835 kB] Get:46 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:47 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:48 http://deb.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:49 http://deb.debian.org/debian/ jessie/main fonts-droid all 1:4.4.4r2-6 [3729 kB] Get:50 http://deb.debian.org/debian/ jessie/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:51 http://deb.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:52 http://deb.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:53 http://deb.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:54 http://deb.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:55 http://deb.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:56 http://deb.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:57 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:58 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:59 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:60 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:61 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:62 http://deb.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:63 http://deb.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:64 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:65 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:66 http://deb.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:67 http://deb.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:68 http://deb.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:69 http://deb.debian.org/debian/ jessie/main libcupsimage2 amd64 1.7.5-11+deb8u2 [117 kB] Get:70 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:71 http://deb.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:72 http://deb.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:73 http://deb.debian.org/debian/ jessie/main libcupsfilters1 amd64 1.0.61-5+deb8u3 [106 kB] Get:74 http://deb.debian.org/debian/ jessie/main librtmp1 amd64 2.4+20150115.gita107cef-1+deb8u1 [60.0 kB] Get:75 http://deb.debian.org/debian/ jessie/main libssh2-1 amd64 1.4.3-4.1+deb8u1 [125 kB] Get:76 http://deb.debian.org/debian/ jessie/main libcurl3-gnutls amd64 7.38.0-4+deb8u11 [253 kB] Get:77 http://deb.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:78 http://deb.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:79 http://deb.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:80 http://deb.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:81 http://deb.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:82 http://deb.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:83 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:84 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:85 http://deb.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:86 http://deb.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:87 http://deb.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:88 http://deb.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:89 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:90 http://deb.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:91 http://deb.debian.org/debian/ jessie/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:92 http://deb.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:93 http://deb.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:94 http://deb.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:95 http://deb.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:96 http://deb.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:97 http://deb.debian.org/debian/ jessie/main mysql-common all 5.5.60-0+deb8u1 [75.4 kB] Get:98 http://deb.debian.org/debian/ jessie/main libmysqlclient18 amd64 5.5.60-0+deb8u1 [671 kB] Get:99 http://deb.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:100 http://deb.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:101 http://deb.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:102 http://deb.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:103 http://deb.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:104 http://deb.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:105 http://deb.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:106 http://deb.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:107 http://deb.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:108 http://deb.debian.org/debian/ jessie/main libpq5 amd64 9.4.18-0+deb8u1 [128 kB] Get:109 http://deb.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:110 http://deb.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:111 http://deb.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:112 http://deb.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:113 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:114 http://deb.debian.org/debian/ jessie/main libxslt1.1 amd64 1.1.28-2+deb8u3 [232 kB] Get:115 http://deb.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:116 http://deb.debian.org/debian/ jessie/main poppler-data all 0.4.7-1 [1491 kB] Get:117 http://deb.debian.org/debian/ jessie/main sgml-base all 1.26+nmu4 [14.6 kB] Get:118 http://deb.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:119 http://deb.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:120 http://deb.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:121 http://deb.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:122 http://deb.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:123 http://deb.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:124 http://deb.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:125 http://deb.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u4 [60.5 kB] Get:126 http://deb.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:127 http://deb.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:128 http://deb.debian.org/debian/ jessie/main bedtools amd64 2.21.0-1 [608 kB] Get:129 http://deb.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:130 http://deb.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:131 http://deb.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:132 http://deb.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:133 http://deb.debian.org/debian/ jessie/main libbio-perl-run-perl all 1.6.9-2 [753 kB] Get:134 http://deb.debian.org/debian/ jessie/main bioperl-run all 1.6.9-2 [44.0 kB] Get:135 http://deb.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:136 http://deb.debian.org/debian/ jessie/main bwa amd64 0.7.10-1 [169 kB] Get:137 http://deb.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:138 http://deb.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:139 http://deb.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:140 http://deb.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:141 http://deb.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:142 http://deb.debian.org/debian/ jessie/main dialign amd64 2.2.1-7 [135 kB] Get:143 http://deb.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:144 http://deb.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:145 http://deb.debian.org/debian/ jessie/main libhpdf-2.2.1 amd64 2.2.1-1.1 [322 kB] Get:146 http://deb.debian.org/debian/ jessie/main emboss-lib amd64 6.6.0+dfsg-1 [3102 kB] Get:147 http://deb.debian.org/debian/ jessie/main emboss-data all 6.6.0+dfsg-1 [60.8 MB] Get:148 http://deb.debian.org/debian/ jessie/main emboss amd64 6.6.0+dfsg-1 [1023 kB] Get:149 http://deb.debian.org/debian/ jessie/main exonerate amd64 2.2.0-6 [3053 kB] Get:150 http://deb.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:151 http://deb.debian.org/debian/ jessie/main libbio-graphics-perl all 2.39-2 [606 kB] Get:152 http://deb.debian.org/debian/ jessie/main libcgi-session-perl all 4.48-1+deb8u1 [119 kB] Get:153 http://deb.debian.org/debian/ jessie/main libjson-perl all 2.61-1 [84.7 kB] Get:154 http://deb.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:155 http://deb.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:156 http://deb.debian.org/debian/ jessie/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:157 http://deb.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:158 http://deb.debian.org/debian/ jessie/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:159 http://deb.debian.org/debian/ jessie/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:160 http://deb.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:161 http://deb.debian.org/debian/ jessie/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:162 http://deb.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:163 http://deb.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:164 http://deb.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:165 http://deb.debian.org/debian/ jessie/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:166 http://deb.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:167 http://deb.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:168 http://deb.debian.org/debian/ jessie/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:169 http://deb.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:170 http://deb.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:171 http://deb.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:172 http://deb.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:173 http://deb.debian.org/debian/ jessie/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:174 http://deb.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:175 http://deb.debian.org/debian/ jessie/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:176 http://deb.debian.org/debian/ jessie/main libterm-readkey-perl amd64 2.32-1+b1 [28.0 kB] Get:177 http://deb.debian.org/debian/ jessie/main sqlite3 amd64 3.8.7.1-1+deb8u2 [101 kB] Get:178 http://deb.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:179 http://deb.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:180 http://deb.debian.org/debian/ jessie/main libjs-prototype all 1.7.1-3 [44.3 kB] Get:181 http://deb.debian.org/debian/ jessie/main libjs-scriptaculous all 1.9.0-2 [129 kB] Get:182 http://deb.debian.org/debian/ jessie/main libanyevent-perl amd64 7.070-3 [404 kB] Get:183 http://deb.debian.org/debian/ jessie/main libanyevent-cachedns-perl all 0.08-1 [7040 B] Get:184 http://deb.debian.org/debian/ jessie/main libcommon-sense-perl amd64 3.73-2+b3 [23.7 kB] Get:185 http://deb.debian.org/debian/ jessie/main libanyevent-http-perl all 2.21-1 [34.5 kB] Get:186 http://deb.debian.org/debian/ jessie/main libstring-approx-perl amd64 3.27-1+b2 [40.8 kB] Get:187 http://deb.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:188 http://deb.debian.org/debian/ jessie/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:189 http://deb.debian.org/debian/ jessie/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:190 http://deb.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:191 http://deb.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:192 http://deb.debian.org/debian/ jessie/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:193 http://deb.debian.org/debian/ jessie/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:194 http://deb.debian.org/debian/ jessie/main libvm-ec2-perl all 1.28-1 [768 kB] Get:195 http://deb.debian.org/debian/ jessie/main gbrowse all 2.54+dfsg-3 [2316 kB] Get:196 http://deb.debian.org/debian/ jessie/main libjbig2dec0 amd64 0.13-4~deb8u2 [60.2 kB] Get:197 http://deb.debian.org/debian/ jessie/main libgs9-common all 9.06~dfsg-2+deb8u7 [1981 kB] Get:198 http://deb.debian.org/debian/ jessie/main libgs9 amd64 9.06~dfsg-2+deb8u7 [1918 kB] Get:199 http://deb.debian.org/debian/ jessie/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB] Get:200 http://deb.debian.org/debian/ jessie/main ghostscript amd64 9.06~dfsg-2+deb8u7 [85.1 kB] Get:201 http://deb.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:202 http://deb.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:203 http://deb.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:204 http://deb.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:205 http://deb.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:206 http://deb.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:207 http://deb.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:208 http://deb.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:209 http://deb.debian.org/debian/ jessie/main infernal amd64 1.1.1-2 [1862 kB] Get:210 http://deb.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:211 http://deb.debian.org/debian/ jessie/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:212 http://deb.debian.org/debian/ jessie/main liberror-perl all 0.17-1.1 [22.4 kB] Get:213 http://deb.debian.org/debian/ jessie/main libipc-sharelite-perl amd64 0.17-3+b2 [24.9 kB] Get:214 http://deb.debian.org/debian/ jessie/main libcache-cache-perl all 1.07-2 [76.2 kB] Get:215 http://deb.debian.org/debian/ jessie/main libace-perl amd64 1.92-3+b1 [310 kB] Get:216 http://deb.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:217 http://deb.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:218 http://deb.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:219 http://deb.debian.org/debian/ jessie/main libalgorithm-munkres-perl all 0.08-2 [12.5 kB] Get:220 http://deb.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u11 [1362 B] Get:221 http://deb.debian.org/debian/ jessie/main libdevel-symdump-perl all 2.12-1 [17.1 kB] Get:222 http://deb.debian.org/debian/ jessie/main libapache2-mod-perl2 amd64 2.0.9~1624218-2+deb8u2 [903 kB] Get:223 http://deb.debian.org/debian/ jessie/main libapache-dbi-perl all 1.12-1 [54.6 kB] Get:224 http://deb.debian.org/debian/ jessie/main libapache2-reload-perl all 0.12-3 [17.3 kB] Get:225 http://deb.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:226 http://deb.debian.org/debian/ jessie/main libclass-method-modifiers-perl all 2.11-1 [18.5 kB] Get:227 http://deb.debian.org/debian/ jessie/main libsub-exporter-progressive-perl all 0.001011-1 [7748 B] Get:228 http://deb.debian.org/debian/ jessie/main libdevel-globaldestruction-perl all 0.13-1 [8676 B] Get:229 http://deb.debian.org/debian/ jessie/main libparams-classify-perl amd64 0.013-4+b2 [24.1 kB] Get:230 http://deb.debian.org/debian/ jessie/main libmodule-runtime-perl all 0.014-1 [17.9 kB] Get:231 http://deb.debian.org/debian/ jessie/main libimport-into-perl all 1.002004-1 [11.5 kB] Get:232 http://deb.debian.org/debian/ jessie/main librole-tiny-perl all 1.003004-1 [19.4 kB] Get:233 http://deb.debian.org/debian/ jessie/main libstrictures-perl all 1.005005-1 [13.5 kB] Get:234 http://deb.debian.org/debian/ jessie/main libmoo-perl all 1.006001-1 [62.7 kB] Get:235 http://deb.debian.org/debian/ jessie/main libexporter-tiny-perl all 0.038-2 [28.7 kB] Get:236 http://deb.debian.org/debian/ jessie/main libtype-tiny-perl all 1.000004-1 [269 kB] Get:237 http://deb.debian.org/debian/ jessie/main libarray-compare-perl all 2.11-1 [14.2 kB] Get:238 http://deb.debian.org/debian/ jessie/main libasync-interrupt-perl amd64 1.20-1+b1 [33.8 kB] Get:239 http://deb.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:240 http://deb.debian.org/debian/ jessie/main libb-hooks-op-check-perl amd64 0.19-2+b1 [11.3 kB] Get:241 http://deb.debian.org/debian/ jessie/main liblexical-sealrequirehints-perl amd64 0.007-1+b2 [14.4 kB] Get:242 http://deb.debian.org/debian/ jessie/main libbareword-filehandles-perl amd64 0.003-1+b2 [8922 B] Get:243 http://deb.debian.org/debian/ jessie/main libbio-asn1-entrezgene-perl all 1.700-1 [40.9 kB] Get:244 http://deb.debian.org/debian/ jessie/main libstaden-read1 amd64 1.13.7-1 [260 kB] Get:245 http://deb.debian.org/debian/ jessie/main libbio-scf-perl amd64 1.03-2+b1 [21.3 kB] Get:246 http://deb.debian.org/debian/ jessie/main libcarp-clan-perl all 6.04-1 [15.8 kB] Get:247 http://deb.debian.org/debian/ jessie/main libbit-vector-perl amd64 7.3-1+b2 [146 kB] Get:248 http://deb.debian.org/debian/ jessie/main libbsd-resource-perl amd64 1.2907-1+b2 [33.1 kB] Get:249 http://deb.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:250 http://deb.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:251 http://deb.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:252 http://deb.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:253 http://deb.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:254 http://deb.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:255 http://deb.debian.org/debian/ jessie/main libclass-xsaccessor-perl amd64 1.19-2+b4 [39.0 kB] Get:256 http://deb.debian.org/debian/ jessie/main libclone-perl amd64 0.37-1+b1 [14.2 kB] Get:257 http://deb.debian.org/debian/ jessie/main libconvert-binary-c-perl amd64 0.76-3+b2 [274 kB] Get:258 http://deb.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:259 http://deb.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:260 http://deb.debian.org/debian/ jessie/main libcrypt-rc4-perl all 2.02-2 [8150 B] Get:261 http://deb.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:262 http://deb.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:263 http://deb.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:264 http://deb.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:265 http://deb.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:266 http://deb.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:267 http://deb.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:268 http://deb.debian.org/debian/ jessie/main libdate-calc-perl all 6.3-2 [194 kB] Get:269 http://deb.debian.org/debian/ jessie/main libdate-calc-xs-perl amd64 6.3-2 [54.0 kB] Get:270 http://deb.debian.org/debian/ jessie/main libdate-manip-perl all 6.47-1 [923 kB] Get:271 http://deb.debian.org/debian/ jessie/main libdbd-mysql-perl amd64 4.028-2+deb8u2 [119 kB] Get:272 http://deb.debian.org/debian/ jessie/main libdbd-pg-perl amd64 3.4.2-1 [203 kB] Get:273 http://deb.debian.org/debian/ jessie/main libpadwalker-perl amd64 1.98-1+b1 [20.7 kB] Get:274 http://deb.debian.org/debian/ jessie/main libdevel-caller-perl amd64 2.06-1+b2 [12.7 kB] Get:275 http://deb.debian.org/debian/ jessie/main libdevel-lexalias-perl amd64 0.05-1+b2 [9686 B] Get:276 http://deb.debian.org/debian/ jessie/main libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:277 http://deb.debian.org/debian/ jessie/main libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:278 http://deb.debian.org/debian/ jessie/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:279 http://deb.debian.org/debian/ jessie/main libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:280 http://deb.debian.org/debian/ jessie/main libsvg-perl all 2.59-1 [75.2 kB] Get:281 http://deb.debian.org/debian/ jessie/main libgd-svg-perl all 0.33-1 [64.8 kB] Get:282 http://deb.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:283 http://deb.debian.org/debian/ jessie/main libheap-perl all 0.80-2 [43.0 kB] Get:284 http://deb.debian.org/debian/ jessie/main libgraph-perl all 1:0.96-1.1 [126 kB] Get:285 http://deb.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:286 http://deb.debian.org/debian/ jessie/main libipc-run-perl all 0.92-1+deb8u1 [101 kB] Get:287 http://deb.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:288 http://deb.debian.org/debian/ jessie/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:289 http://deb.debian.org/debian/ jessie/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:290 http://deb.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:291 http://deb.debian.org/debian/ jessie/main libguard-perl amd64 1.022-2+b1 [16.5 kB] Get:292 http://deb.debian.org/debian/ jessie/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:293 http://deb.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:294 http://deb.debian.org/debian/ jessie/main libhtml-tableextract-perl all 2.11-1 [32.0 kB] Get:295 http://deb.debian.org/debian/ jessie/main libindirect-perl amd64 0.33-1 [26.4 kB] Get:296 http://deb.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:297 http://deb.debian.org/debian/ jessie/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:298 http://deb.debian.org/debian/ jessie/main libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:299 http://deb.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:300 http://deb.debian.org/debian/ jessie/main libjson-xs-perl amd64 2.340-1+b2 [85.9 kB] Get:301 http://deb.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:302 http://deb.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:303 http://deb.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:304 http://deb.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:305 http://deb.debian.org/debian/ jessie/main libmath-derivative-perl all 0.01-6 [6214 B] Get:306 http://deb.debian.org/debian/ jessie/main libmath-spline-perl all 0.02-1 [7992 B] Get:307 http://deb.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:308 http://deb.debian.org/debian/ jessie/main libmldbm-perl all 2.05-1 [18.3 kB] Get:309 http://deb.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:310 http://deb.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:311 http://deb.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:312 http://deb.debian.org/debian/ jessie/main libmultidimensional-perl amd64 0.010-1+b2 [8506 B] Get:313 http://deb.debian.org/debian/ jessie/main libole-storage-lite-perl all 0.19-1 [26.1 kB] Get:314 http://deb.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:315 http://deb.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:316 http://deb.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:317 http://deb.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:318 http://deb.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:319 http://deb.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:320 http://deb.debian.org/debian/ jessie/main libpostscript-perl all 0.06-2 [31.4 kB] Get:321 http://deb.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:322 http://deb.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:323 http://deb.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:324 http://deb.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:325 http://deb.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:326 http://deb.debian.org/debian/ jessie/main libsort-naturally-perl all 1.03-1 [13.9 kB] Get:327 http://deb.debian.org/debian/ jessie/main libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:328 http://deb.debian.org/debian/ jessie/main libunicode-map-perl amd64 0.112-11+b1 [146 kB] Get:329 http://deb.debian.org/debian/ jessie/main libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:330 http://deb.debian.org/debian/ jessie/main libsub-name-perl amd64 0.12-1 [12.1 kB] Get:331 http://deb.debian.org/debian/ jessie/main libtree-dagnode-perl all 1.22-1 [59.5 kB] Get:332 http://deb.debian.org/debian/ jessie/main libsvg-graph-perl all 0.02-2 [130 kB] Get:333 http://deb.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:334 http://deb.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:335 http://deb.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:336 http://deb.debian.org/debian/ jessie/main libtype-tiny-xs-perl amd64 0.010-1 [27.1 kB] Get:337 http://deb.debian.org/debian/ jessie/main libxml-perl all 0.08-2 [113 kB] Get:338 http://deb.debian.org/debian/ jessie/main libxml-regexp-perl all 0.04-1 [8370 B] Get:339 http://deb.debian.org/debian/ jessie/main libxml-dom-perl all 1.44-1 [184 kB] Get:340 http://deb.debian.org/debian/ jessie/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:341 http://deb.debian.org/debian/ jessie/main libxml-dom-xpath-perl all 0.14-1 [9622 B] Get:342 http://deb.debian.org/debian/ jessie/main libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:343 http://deb.debian.org/debian/ jessie/main libxml-libxslt-perl amd64 1.92-1+b1 [47.7 kB] Get:344 http://deb.debian.org/debian/ jessie/main libxml-sax-writer-perl all 0.54-1 [23.4 kB] Get:345 http://deb.debian.org/debian/ jessie/main libxml-writer-perl all 0.625-1 [29.7 kB] Get:346 http://deb.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:347 http://deb.debian.org/debian/ jessie/main libyaml-libyaml-perl amd64 0.41-6 [67.0 kB] Get:348 http://deb.debian.org/debian/ jessie/main libyaml-perl all 1.13-1 [69.7 kB] Get:349 http://deb.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:350 http://deb.debian.org/debian/ jessie/main maq amd64 0.7.1-5 [321 kB] Get:351 http://deb.debian.org/debian/ jessie/main muscle amd64 1:3.8.31-1 [169 kB] Get:352 http://deb.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:353 http://deb.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:354 http://deb.debian.org/debian/ jessie/main perl-doc all 5.20.2-3+deb8u11 [7347 kB] Get:355 http://deb.debian.org/debian/ jessie/main perl-tk amd64 1:804.032-3+b3 [2031 kB] Get:356 http://deb.debian.org/debian/ jessie/main phyml amd64 2:20120412-2 [939 kB] Get:357 http://deb.debian.org/debian/ jessie/main poa amd64 2.0+20060928-3 [50.8 kB] Get:358 http://deb.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:359 http://deb.debian.org/debian/ jessie/main primer3 amd64 2.3.6-1 [168 kB] Get:360 http://deb.debian.org/debian/ jessie/main probalign amd64 1.4-3 [67.9 kB] Get:361 http://deb.debian.org/debian/ jessie/main probcons amd64 1.12-9 [196 kB] Get:362 http://deb.debian.org/debian/ jessie/main proda amd64 1.0-8 [58.3 kB] Get:363 http://deb.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:364 http://deb.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:365 http://deb.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:366 http://deb.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:367 http://deb.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:368 http://deb.debian.org/debian/ jessie/main samtools amd64 0.1.19-1 [563 kB] Get:369 http://deb.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:370 http://deb.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:371 http://deb.debian.org/debian/ jessie/main ssl-cert all 1.0.35 [20.9 kB] Get:372 http://deb.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:373 http://deb.debian.org/debian/ jessie/main tigr-glimmer amd64 3.02-3 [276 kB] Get:374 http://deb.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:375 http://deb.debian.org/debian/ jessie/main wise-data all 2.4.1-17 [108 kB] Get:376 http://deb.debian.org/debian/ jessie/main wise amd64 2.4.1-17 [961 kB] Get:377 http://deb.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:378 http://deb.debian.org/debian/ jessie/main xml-core all 0.13+nmu2 [24.2 kB] Get:379 http://deb.debian.org/debian/ jessie/main bowtie amd64 1.1.1-2 [1369 kB] Get:380 http://deb.debian.org/debian/ jessie/main libev-perl amd64 4.18-1 [244 kB] Get:381 http://deb.debian.org/debian/ jessie/main libset-scalar-perl all 1.29-1 [35.3 kB] Get:382 http://deb.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:383 http://deb.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 191 MB in 15s (12.3 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-13.1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libnettle4:amd64. Preparing to unpack .../libnettle4_2.7.1-5+deb8u2_amd64.deb ... Unpacking libnettle4:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libhogweed2:amd64. Preparing to unpack .../libhogweed2_2.7.1-5+deb8u2_amd64.deb ... Unpacking libhogweed2:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+deb8u1_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+deb8u1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.20.7-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.20.7-1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.2-3+deb8u3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.2-3+deb8u3) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.8-6+deb8u7_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-5+b1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-5+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.29-1+deb8u2_amd64.deb ... Unpacking libidn11:amd64 (1.29-1+deb8u2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.40+dfsg-1+deb8u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.22+15-2+deb8u4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u6_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Selecting previously unselected package perl-modules. Preparing to unpack .../perl-modules_5.20.2-3+deb8u11_all.deb ... Unpacking perl-modules (5.20.2-3+deb8u11) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl (5.20.2-3+deb8u11) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../libpython2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7-minimal (2.7.9-2+deb8u1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.9-1_amd64.deb ... Unpacking python-minimal (2.7.9-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.58_all.deb ... Unpacking mime-support (3.58) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../libpython2.7-stdlib_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7 (2.7.9-2+deb8u1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../libpython-stdlib_2.7.9-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.9-1) ... Setting up libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7-minimal (2.7.9-2+deb8u1) ... Setting up python-minimal (2.7.9-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9667 files and directories currently installed.) Preparing to unpack .../python_2.7.9-1_amd64.deb ... Unpacking python (2.7.9-1) ... Selecting previously unselected package libapr1:amd64. Preparing to unpack .../libapr1_1.5.1-3_amd64.deb ... Unpacking libapr1:amd64 (1.5.1-3) ... Selecting previously unselected package libaprutil1:amd64. Preparing to unpack .../libaprutil1_1.5.4-1_amd64.deb ... Unpacking libaprutil1:amd64 (1.5.4-1) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:amd64. Preparing to unpack .../libaprutil1-dbd-sqlite3_1.5.4-1_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Selecting previously unselected package libaprutil1-ldap:amd64. Preparing to unpack .../libaprutil1-ldap_1.5.4-1_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.5.4-1) ... Selecting previously unselected package liblua5.1-0:amd64. Preparing to unpack .../liblua5.1-0_5.1.5-7.1_amd64.deb ... Unpacking liblua5.1-0:amd64 (5.1.5-7.1) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../apache2-bin_2.4.10-10+deb8u12_amd64.deb ... Unpacking apache2-bin (2.4.10-10+deb8u12) ... Selecting previously unselected package apache2-utils. Preparing to unpack .../apache2-utils_2.4.10-10+deb8u12_amd64.deb ... Unpacking apache2-utils (2.4.10-10+deb8u12) ... Selecting previously unselected package apache2-data. Preparing to unpack .../apache2-data_2.4.10-10+deb8u12_all.deb ... Unpacking apache2-data (2.4.10-10+deb8u12) ... Selecting previously unselected package apache2. Preparing to unpack .../apache2_2.4.10-10+deb8u12_amd64.deb ... Unpacking apache2 (2.4.10-10+deb8u12) ... Selecting previously unselected package libpng12-0:amd64. Preparing to unpack .../libpng12-0_1.2.50-2+deb8u3_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.50-2+deb8u3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.5.2-3+deb8u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.34-1_all.deb ... Unpacking fonts-dejavu-core (2.34-1) ... Selecting previously unselected package fonts-liberation. Preparing to unpack .../fonts-liberation_1.07.4-1_all.deb ... Unpacking fonts-liberation (1.07.4-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.0-6.3+deb8u1_all.deb ... Unpacking fontconfig-config (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../fontconfig_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking fontconfig (2.11.0-6.3+deb8u1) ... Selecting previously unselected package fonts-droid. Preparing to unpack .../fonts-droid_1%3a4.4.4r2-6_all.deb ... Unpacking fonts-droid (1:4.4.4r2-6) ... Selecting previously unselected package libatm1:amd64. Preparing to unpack .../libatm1_1%3a2.5.1-1.5_amd64.deb ... Unpacking libatm1:amd64 (1:2.5.1-1.5) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../libavahi-common-data_0.6.31-5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.31-5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../libavahi-common3_0.6.31-5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.31-5) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../libdbus-1-3_1.8.22-0+deb8u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../libavahi-client3_0.6.31-5_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.31-5) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../libpixman-1-0_0.32.6-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.32.6-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-3+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.10-3+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-3+deb8u1_all.deb ... Unpacking libx11-data (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.2-3+deb8u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../libxcb-render0_1.10-3+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../libxcb-shm0_1.10-3+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../libxrender1_1%3a0.9.8-1+b1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.8-1+b1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../libcairo2_1.14.0-2.1+deb8u2_amd64.deb ... Unpacking libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Selecting previously unselected package libcap-ng0:amd64. Preparing to unpack .../libcap-ng0_0.7.4-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.4-2) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../libcups2_1.7.5-11+deb8u2_amd64.deb ... Unpacking libcups2:amd64 (1.7.5-11+deb8u2) ... Selecting previously unselected package libcupsimage2:amd64. Preparing to unpack .../libcupsimage2_1.7.5-11+deb8u2_amd64.deb ... Unpacking libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.3.1-12) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../libtiff5_4.0.3-12.3+deb8u5_amd64.deb ... Unpacking libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Selecting previously unselected package libcupsfilters1:amd64. Preparing to unpack .../libcupsfilters1_1.0.61-5+deb8u3_amd64.deb ... Unpacking libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../librtmp1_2.4+20150115.gita107cef-1+deb8u1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../libssh2-1_1.4.3-4.1+deb8u1_amd64.deb ... Unpacking libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../libcurl3-gnutls_7.38.0-4+deb8u11_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../libdatrie1_0.2.8-1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.8-1) ... Selecting previously unselected package libisc-export95. Preparing to unpack .../libisc-export95_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libdns-export100. Preparing to unpack .../libdns-export100_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libvpx1:amd64. Preparing to unpack .../libvpx1_1.3.0-3+deb8u1_amd64.deb ... Unpacking libvpx1:amd64 (1.3.0-3+deb8u1) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../libxpm4_1%3a3.5.12-0+deb8u1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Selecting previously unselected package libgd3:amd64. Preparing to unpack .../libgd3_2.1.0-5+deb8u11_amd64.deb ... Unpacking libgd3:amd64 (2.1.0-5+deb8u11) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_4.9.2-10+deb8u1_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.42.1-1+b1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.42.1-1+b1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgomp1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../libgraphite2-3_1.3.10-1~deb8u1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../libharfbuzz0b_0.9.35-2_amd64.deb ... Unpacking libharfbuzz0b:amd64 (0.9.35-2) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+7_all.deb ... Unpacking x11-common (1:7.7+7) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../libice6_2%3a1.0.9-1+b1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+b1) ... Selecting previously unselected package libijs-0.35:amd64. Preparing to unpack .../libijs-0.35_0.35-10_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-10) ... Selecting previously unselected package libisccfg-export90. Preparing to unpack .../libisccfg-export90_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libirs-export91. Preparing to unpack .../libirs-export91_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libjasper1:amd64. Preparing to unpack .../libjasper1_1.900.1-debian1-2.4+deb8u3_amd64.deb ... Unpacking libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../liblcms2-2_2.6-3+deb8u1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.6-3+deb8u1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../libltdl7_2.4.2-1.11+b1_amd64.deb ... Unpacking libltdl7:amd64 (2.4.2-1.11+b1) ... Selecting previously unselected package mysql-common. Preparing to unpack .../mysql-common_5.5.60-0+deb8u1_all.deb ... Unpacking mysql-common (5.5.60-0+deb8u1) ... Selecting previously unselected package libmysqlclient18:amd64. Preparing to unpack .../libmysqlclient18_5.5.60-0+deb8u1_amd64.deb ... Unpacking libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../ncbi-data_6.1.20120620-8_all.deb ... Unpacking ncbi-data (6.1.20120620-8) ... Selecting previously unselected package libncbi6:amd64. Preparing to unpack .../libncbi6_6.1.20120620-8_amd64.deb ... Unpacking libncbi6:amd64 (6.1.20120620-8) ... Selecting previously unselected package libossp-uuid16:amd64. Preparing to unpack .../libossp-uuid16_1.6.2-1.5+b1_amd64.deb ... Unpacking libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../libthai-data_0.1.21-1_all.deb ... Unpacking libthai-data (0.1.21-1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../libthai0_0.1.21-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.21-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../libpango-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../libpangoft2-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../libpangocairo-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../libpaper1_1.1.24+nmu4_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu4) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../libpq5_9.4.18-0+deb8u1_amd64.deb ... Unpacking libpq5:amd64 (9.4.18-0+deb8u1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.4-1+b1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.4-1+b1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../libxmu6_2%3a1.1.2-1_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-1) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../libxaw7_2%3a1.0.12-2+b1_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.12-2+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../libxft2_2.3.2-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../libxslt1.1_1.1.28-2+deb8u3_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../libyaml-0-2_0.1.6-3_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.6-3) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.7-1_all.deb ... Unpacking poppler-data (0.4.7-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../sgml-base_1.26+nmu4_all.deb ... Unpacking sgml-base (1.26+nmu4) ... Selecting previously unselected package iproute2. Preparing to unpack .../iproute2_3.16.0-2_amd64.deb ... Unpacking iproute2 (3.16.0-2) ... Selecting previously unselected package ifupdown. Preparing to unpack .../ifupdown_0.7.53.1_amd64.deb ... Unpacking ifupdown (0.7.53.1) ... Selecting previously unselected package isc-dhcp-common. Preparing to unpack .../isc-dhcp-common_4.3.1-6+deb8u3_amd64.deb ... Unpacking isc-dhcp-common (4.3.1-6+deb8u3) ... Selecting previously unselected package isc-dhcp-client. Preparing to unpack .../isc-dhcp-client_4.3.1-6+deb8u3_amd64.deb ... Unpacking isc-dhcp-client (4.3.1-6+deb8u3) ... Selecting previously unselected package libxtables10. Preparing to unpack .../libxtables10_1.4.21-2+b1_amd64.deb ... Unpacking libxtables10 (1.4.21-2+b1) ... Selecting previously unselected package netbase. Preparing to unpack .../archives/netbase_5.3_all.deb ... Unpacking netbase (5.3) ... Selecting previously unselected package dbus. Preparing to unpack .../dbus_1.8.22-0+deb8u1_amd64.deb ... Unpacking dbus (1.8.22-0+deb8u1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2+deb8u4_amd64.deb ... Unpacking file (1:5.22+15-2+deb8u4) ... Selecting previously unselected package krb5-locales. Preparing to unpack .../krb5-locales_1.12.1+dfsg-19+deb8u4_all.deb ... Unpacking krb5-locales (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package amap-align. Preparing to unpack .../amap-align_2.2-4_amd64.deb ... Unpacking amap-align (2.2-4) ... Selecting previously unselected package bedtools. Preparing to unpack .../bedtools_2.21.0-1_amd64.deb ... Unpacking bedtools (2.21.0-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../libdata-stag-perl_0.13-1_all.deb ... Unpacking libdata-stag-perl (0.13-1) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../libbio-perl-perl_1.6.924-1_all.deb ... Unpacking libbio-perl-perl (1.6.924-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../bioperl_1.6.924-1_all.deb ... Unpacking bioperl (1.6.924-1) ... Selecting previously unselected package libbio-perl-run-perl. Preparing to unpack .../libbio-perl-run-perl_1.6.9-2_all.deb ... Unpacking libbio-perl-run-perl (1.6.9-2) ... Selecting previously unselected package bioperl-run. Preparing to unpack .../bioperl-run_1.6.9-2_all.deb ... Unpacking bioperl-run (1.6.9-2) ... Selecting previously unselected package blast2. Preparing to unpack .../blast2_1%3a2.2.26.20120620-8_amd64.deb ... Unpacking blast2 (1:2.2.26.20120620-8) ... Selecting previously unselected package bwa. Preparing to unpack .../bwa_0.7.10-1_amd64.deb ... Unpacking bwa (0.7.10-1) ... Selecting previously unselected package openssl. Preparing to unpack .../openssl_1.0.1t-1+deb8u8_amd64.deb ... Unpacking openssl (1.0.1t-1+deb8u8) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../ca-certificates_20141019+deb8u3_all.deb ... Unpacking ca-certificates (20141019+deb8u3) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../libargtable2-0_12-1.1_amd64.deb ... Unpacking libargtable2-0 (12-1.1) ... Selecting previously unselected package clustalo. Preparing to unpack .../clustalo_1.2.1-1_amd64.deb ... Unpacking clustalo (1.2.1-1) ... Selecting previously unselected package clustalw. Preparing to unpack .../clustalw_2.1+lgpl-4_amd64.deb ... Unpacking clustalw (2.1+lgpl-4) ... Selecting previously unselected package dialign. Preparing to unpack .../dialign_2.2.1-7_amd64.deb ... Unpacking dialign (2.2.1-7) ... Selecting previously unselected package dialign-tx-data. Preparing to unpack .../dialign-tx-data_1.0.2-7_all.deb ... Unpacking dialign-tx-data (1.0.2-7) ... Selecting previously unselected package dialign-tx. Preparing to unpack .../dialign-tx_1.0.2-7_amd64.deb ... Unpacking dialign-tx (1.0.2-7) ... Selecting previously unselected package libhpdf-2.2.1. Preparing to unpack .../libhpdf-2.2.1_2.2.1-1.1_amd64.deb ... Unpacking libhpdf-2.2.1 (2.2.1-1.1) ... Selecting previously unselected package emboss-lib. Preparing to unpack .../emboss-lib_6.6.0+dfsg-1_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-1) ... Selecting previously unselected package emboss-data. Preparing to unpack .../emboss-data_6.6.0+dfsg-1_all.deb ... Unpacking emboss-data (6.6.0+dfsg-1) ... Selecting previously unselected package emboss. Preparing to unpack .../emboss_6.6.0+dfsg-1_amd64.deb ... Unpacking emboss (6.6.0+dfsg-1) ... Selecting previously unselected package exonerate. Preparing to unpack .../exonerate_2.2.0-6_amd64.deb ... Unpacking exonerate (2.2.0-6) ... Selecting previously unselected package libgd-perl. Preparing to unpack .../libgd-perl_2.53-1+b1_amd64.deb ... Unpacking libgd-perl (2.53-1+b1) ... Selecting previously unselected package libbio-graphics-perl. Preparing to unpack .../libbio-graphics-perl_2.39-2_all.deb ... Unpacking libbio-graphics-perl (2.39-2) ... Selecting previously unselected package libcgi-session-perl. Preparing to unpack .../libcgi-session-perl_4.48-1+deb8u1_all.deb ... Unpacking libcgi-session-perl (4.48-1+deb8u1) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../libjson-perl_2.61-1_all.deb ... Unpacking libjson-perl (2.61-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../liblist-moreutils-perl_0.33-2+b1_amd64.deb ... Unpacking liblist-moreutils-perl (0.33-2+b1) ... Selecting previously unselected package libstatistics-descriptive-perl. Preparing to unpack .../libstatistics-descriptive-perl_3.0607-1_all.deb ... Unpacking libstatistics-descriptive-perl (3.0607-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../libencode-locale-perl_1.03-1_all.deb ... Unpacking libencode-locale-perl (1.03-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../libhttp-date-perl_6.02-1_all.deb ... Unpacking libhttp-date-perl (6.02-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../liburi-perl_1.64-1_all.deb ... Unpacking liburi-perl (1.64-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../libhtml-tagset-perl_3.20-2_all.deb ... Unpacking libhtml-tagset-perl (3.20-2) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../libhtml-parser-perl_3.71-1+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.71-1+b3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../libhtml-tree-perl_5.03-1_all.deb ... Unpacking libhtml-tree-perl (5.03-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../libio-html-perl_1.001-1_all.deb ... Unpacking libio-html-perl (1.001-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../liblwp-mediatypes-perl_6.02-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.02-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../libhttp-message-perl_6.06-1_all.deb ... Unpacking libhttp-message-perl (6.06-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../libhttp-cookies-perl_6.01-1_all.deb ... Unpacking libhttp-cookies-perl (6.01-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../libhttp-negotiate-perl_6.00-2_all.deb ... Unpacking libhttp-negotiate-perl (6.00-2) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../libnet-ssleay-perl_1.65-1+deb8u1_amd64.deb ... Unpacking libnet-ssleay-perl (1.65-1+deb8u1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../libio-socket-ssl-perl_2.002-2+deb8u3_all.deb ... Unpacking libio-socket-ssl-perl (2.002-2+deb8u3) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../libnet-http-perl_6.07-1_all.deb ... Unpacking libnet-http-perl (6.07-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../liblwp-protocol-https-perl_6.06-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.06-2) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../libwww-perl_6.08-1_all.deb ... Unpacking libwww-perl (6.08-1) ... Selecting previously unselected package libhttp-daemon-perl. Preparing to unpack .../libhttp-daemon-perl_6.01-1_all.deb ... Unpacking libhttp-daemon-perl (6.01-1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../libterm-readkey-perl_2.32-1+b1_amd64.deb ... Unpacking libterm-readkey-perl (2.32-1+b1) ... Selecting previously unselected package sqlite3. Preparing to unpack .../sqlite3_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking sqlite3 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libdbi-perl. Preparing to unpack .../libdbi-perl_1.631-3+b1_amd64.deb ... Unpacking libdbi-perl (1.631-3+b1) ... Selecting previously unselected package libdbd-sqlite3-perl. Preparing to unpack .../libdbd-sqlite3-perl_1.44-1_amd64.deb ... Unpacking libdbd-sqlite3-perl (1.44-1) ... Selecting previously unselected package libjs-prototype. Preparing to unpack .../libjs-prototype_1.7.1-3_all.deb ... Unpacking libjs-prototype (1.7.1-3) ... Selecting previously unselected package libjs-scriptaculous. Preparing to unpack .../libjs-scriptaculous_1.9.0-2_all.deb ... Unpacking libjs-scriptaculous (1.9.0-2) ... Selecting previously unselected package libanyevent-perl. Preparing to unpack .../libanyevent-perl_7.070-3_amd64.deb ... Unpacking libanyevent-perl (7.070-3) ... Selecting previously unselected package libanyevent-cachedns-perl. Preparing to unpack .../libanyevent-cachedns-perl_0.08-1_all.deb ... Unpacking libanyevent-cachedns-perl (0.08-1) ... Selecting previously unselected package libcommon-sense-perl. Preparing to unpack .../libcommon-sense-perl_3.73-2+b3_amd64.deb ... Unpacking libcommon-sense-perl (3.73-2+b3) ... Selecting previously unselected package libanyevent-http-perl. Preparing to unpack .../libanyevent-http-perl_2.21-1_all.deb ... Unpacking libanyevent-http-perl (2.21-1) ... Selecting previously unselected package libstring-approx-perl. Preparing to unpack .../libstring-approx-perl_3.27-1+b2_amd64.deb ... Unpacking libstring-approx-perl (3.27-1+b2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.11-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../libxml-sax-base-perl_1.07-1_all.deb ... Unpacking libxml-sax-base-perl (1.07-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../libxml-sax-perl_0.99+dfsg-2_all.deb ... Unpacking libxml-sax-perl (0.99+dfsg-2) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../libxml-libxml-perl_2.0116+dfsg-1+deb8u2_amd64.deb ... Unpacking libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../libxml-parser-perl_2.41-3_amd64.deb ... Unpacking libxml-parser-perl (2.41-3) ... Selecting previously unselected package libxml-sax-expat-perl. Preparing to unpack .../libxml-sax-expat-perl_0.40-2_all.deb ... Unpacking libxml-sax-expat-perl (0.40-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../libxml-simple-perl_2.20-1_all.deb ... Unpacking libxml-simple-perl (2.20-1) ... Selecting previously unselected package libvm-ec2-perl. Preparing to unpack .../libvm-ec2-perl_1.28-1_all.deb ... Unpacking libvm-ec2-perl (1.28-1) ... Selecting previously unselected package gbrowse. Preparing to unpack .../gbrowse_2.54+dfsg-3_all.deb ... Unpacking gbrowse (2.54+dfsg-3) ... Selecting previously unselected package libjbig2dec0. Preparing to unpack .../libjbig2dec0_0.13-4~deb8u2_amd64.deb ... Unpacking libjbig2dec0 (0.13-4~deb8u2) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../libgs9-common_9.06~dfsg-2+deb8u7_all.deb ... Unpacking libgs9-common (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package libgs9. Preparing to unpack .../libgs9_9.06~dfsg-2+deb8u7_amd64.deb ... Unpacking libgs9 (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package gsfonts. Preparing to unpack .../gsfonts_1%3a8.11+urwcyr1.0.7~pre44-4.2_all.deb ... Unpacking gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Selecting previously unselected package ghostscript. Preparing to unpack .../ghostscript_9.06~dfsg-2+deb8u7_amd64.deb ... Unpacking ghostscript (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package libcdt5. Preparing to unpack .../libcdt5_2.38.0-7_amd64.deb ... Unpacking libcdt5 (2.38.0-7) ... Selecting previously unselected package libcgraph6. Preparing to unpack .../libcgraph6_2.38.0-7_amd64.deb ... Unpacking libcgraph6 (2.38.0-7) ... Selecting previously unselected package libpathplan4. Preparing to unpack .../libpathplan4_2.38.0-7_amd64.deb ... Unpacking libpathplan4 (2.38.0-7) ... Selecting previously unselected package libxdot4. Preparing to unpack .../libxdot4_2.38.0-7_amd64.deb ... Unpacking libxdot4 (2.38.0-7) ... Selecting previously unselected package libgvc6. Preparing to unpack .../libgvc6_2.38.0-7_amd64.deb ... Unpacking libgvc6 (2.38.0-7) ... Selecting previously unselected package libgvpr2. Preparing to unpack .../libgvpr2_2.38.0-7_amd64.deb ... Unpacking libgvpr2 (2.38.0-7) ... Selecting previously unselected package graphviz. Preparing to unpack .../graphviz_2.38.0-7_amd64.deb ... Unpacking graphviz (2.38.0-7) ... Selecting previously unselected package hmmer. Preparing to unpack .../hmmer_3.1b1-3_amd64.deb ... Unpacking hmmer (3.1b1-3) ... Selecting previously unselected package infernal. Preparing to unpack .../infernal_1.1.1-2_amd64.deb ... Unpacking infernal (1.1.1-2) ... Selecting previously unselected package javascript-common. Preparing to unpack .../javascript-common_11_all.deb ... Unpacking javascript-common (11) ... Selecting previously unselected package kalign. Preparing to unpack .../kalign_1%3a2.03+20110620-2_amd64.deb ... Unpacking kalign (1:2.03+20110620-2) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../liberror-perl_0.17-1.1_all.deb ... Unpacking liberror-perl (0.17-1.1) ... Selecting previously unselected package libipc-sharelite-perl. Preparing to unpack .../libipc-sharelite-perl_0.17-3+b2_amd64.deb ... Unpacking libipc-sharelite-perl (0.17-3+b2) ... Selecting previously unselected package libcache-cache-perl. Preparing to unpack .../libcache-cache-perl_1.07-2_all.deb ... Unpacking libcache-cache-perl (1.07-2) ... Selecting previously unselected package libace-perl. Preparing to unpack .../libace-perl_1.92-3+b1_amd64.deb ... Unpacking libace-perl (1.92-3+b1) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../libalgorithm-c3-perl_0.09-1_all.deb ... Unpacking libalgorithm-c3-perl (0.09-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../libalgorithm-diff-perl_1.19.02-3_all.deb ... Unpacking libalgorithm-diff-perl (1.19.02-3) ... Selecting previously unselected package libalgorithm-diff-xs-perl. Preparing to unpack .../libalgorithm-diff-xs-perl_0.04-3+b1_amd64.deb ... Unpacking libalgorithm-diff-xs-perl (0.04-3+b1) ... Selecting previously unselected package libalgorithm-munkres-perl. Preparing to unpack .../libalgorithm-munkres-perl_0.08-2_all.deb ... Unpacking libalgorithm-munkres-perl (0.08-2) ... Selecting previously unselected package libperl5.20. Preparing to unpack .../libperl5.20_5.20.2-3+deb8u11_amd64.deb ... Unpacking libperl5.20 (5.20.2-3+deb8u11) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../libdevel-symdump-perl_2.12-1_all.deb ... Unpacking libdevel-symdump-perl (2.12-1) ... Selecting previously unselected package libapache2-mod-perl2. Preparing to unpack .../libapache2-mod-perl2_2.0.9~1624218-2+deb8u2_amd64.deb ... Unpacking libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Selecting previously unselected package libapache-dbi-perl. Preparing to unpack .../libapache-dbi-perl_1.12-1_all.deb ... Unpacking libapache-dbi-perl (1.12-1) ... Selecting previously unselected package libapache2-reload-perl. Preparing to unpack .../libapache2-reload-perl_0.12-3_all.deb ... Unpacking libapache2-reload-perl (0.12-3) ... Selecting previously unselected package libarchive-extract-perl. Preparing to unpack .../libarchive-extract-perl_0.72-1_all.deb ... Unpacking libarchive-extract-perl (0.72-1) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../libclass-method-modifiers-perl_2.11-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.11-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../libsub-exporter-progressive-perl_0.001011-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001011-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../libdevel-globaldestruction-perl_0.13-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.13-1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../libparams-classify-perl_0.013-4+b2_amd64.deb ... Unpacking libparams-classify-perl (0.013-4+b2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../libmodule-runtime-perl_0.014-1_all.deb ... Unpacking libmodule-runtime-perl (0.014-1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../libimport-into-perl_1.002004-1_all.deb ... Unpacking libimport-into-perl (1.002004-1) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../librole-tiny-perl_1.003004-1_all.deb ... Unpacking librole-tiny-perl (1.003004-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../libstrictures-perl_1.005005-1_all.deb ... Unpacking libstrictures-perl (1.005005-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../libmoo-perl_1.006001-1_all.deb ... Unpacking libmoo-perl (1.006001-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../libexporter-tiny-perl_0.038-2_all.deb ... Unpacking libexporter-tiny-perl (0.038-2) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../libtype-tiny-perl_1.000004-1_all.deb ... Unpacking libtype-tiny-perl (1.000004-1) ... Selecting previously unselected package libarray-compare-perl. Preparing to unpack .../libarray-compare-perl_2.11-1_all.deb ... Unpacking libarray-compare-perl (2.11-1) ... Selecting previously unselected package libasync-interrupt-perl. Preparing to unpack .../libasync-interrupt-perl_1.20-1+b1_amd64.deb ... Unpacking libasync-interrupt-perl (1.20-1+b1) ... Selecting previously unselected package libauthen-sasl-perl. Preparing to unpack .../libauthen-sasl-perl_2.1600-1_all.deb ... Unpacking libauthen-sasl-perl (2.1600-1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../libb-hooks-op-check-perl_0.19-2+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.19-2+b1) ... Selecting previously unselected package liblexical-sealrequirehints-perl. Preparing to unpack .../liblexical-sealrequirehints-perl_0.007-1+b2_amd64.deb ... Unpacking liblexical-sealrequirehints-perl (0.007-1+b2) ... Selecting previously unselected package libbareword-filehandles-perl. Preparing to unpack .../libbareword-filehandles-perl_0.003-1+b2_amd64.deb ... Unpacking libbareword-filehandles-perl (0.003-1+b2) ... Selecting previously unselected package libbio-asn1-entrezgene-perl. Preparing to unpack .../libbio-asn1-entrezgene-perl_1.700-1_all.deb ... Unpacking libbio-asn1-entrezgene-perl (1.700-1) ... Selecting previously unselected package libstaden-read1. Preparing to unpack .../libstaden-read1_1.13.7-1_amd64.deb ... Unpacking libstaden-read1 (1.13.7-1) ... Selecting previously unselected package libbio-scf-perl. Preparing to unpack .../libbio-scf-perl_1.03-2+b1_amd64.deb ... Unpacking libbio-scf-perl (1.03-2+b1) ... Selecting previously unselected package libcarp-clan-perl. Preparing to unpack .../libcarp-clan-perl_6.04-1_all.deb ... Unpacking libcarp-clan-perl (6.04-1) ... Selecting previously unselected package libbit-vector-perl. Preparing to unpack .../libbit-vector-perl_7.3-1+b2_amd64.deb ... Unpacking libbit-vector-perl (7.3-1+b2) ... Selecting previously unselected package libbsd-resource-perl. Preparing to unpack .../libbsd-resource-perl_1.2907-1+b2_amd64.deb ... Unpacking libbsd-resource-perl (1.2907-1+b2) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../libcgi-pm-perl_4.09-1_all.deb ... Unpacking libcgi-pm-perl (4.09-1) ... Selecting previously unselected package libfcgi-perl. Preparing to unpack .../libfcgi-perl_0.77-1+deb8u1_amd64.deb ... Unpacking libfcgi-perl (0.77-1+deb8u1) ... Selecting previously unselected package libcgi-fast-perl. Preparing to unpack .../libcgi-fast-perl_1%3a2.04-1_all.deb ... Unpacking libcgi-fast-perl (1:2.04-1) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../libclass-c3-perl_0.26-1_all.deb ... Unpacking libclass-c3-perl (0.26-1) ... Selecting previously unselected package libclass-c3-xs-perl. Preparing to unpack .../libclass-c3-xs-perl_0.13-2+b1_amd64.deb ... Unpacking libclass-c3-xs-perl (0.13-2+b1) ... Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../libclass-inspector-perl_1.28-1_all.deb ... Unpacking libclass-inspector-perl (1.28-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../libclass-xsaccessor-perl_1.19-2+b4_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-2+b4) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../libclone-perl_0.37-1+b1_amd64.deb ... Unpacking libclone-perl (0.37-1+b1) ... Selecting previously unselected package libconvert-binary-c-perl. Preparing to unpack .../libconvert-binary-c-perl_0.76-3+b2_amd64.deb ... Unpacking libconvert-binary-c-perl (0.76-3+b2) ... Selecting previously unselected package libconvert-binhex-perl. Preparing to unpack .../libconvert-binhex-perl_1.123-2_all.deb ... Unpacking libconvert-binhex-perl (1.123-2) ... Selecting previously unselected package libcpan-meta-perl. Preparing to unpack .../libcpan-meta-perl_2.142690-1_all.deb ... Unpacking libcpan-meta-perl (2.142690-1) ... Selecting previously unselected package libcrypt-rc4-perl. Preparing to unpack .../libcrypt-rc4-perl_2.02-2_all.deb ... Unpacking libcrypt-rc4-perl (2.02-2) ... Selecting previously unselected package libcrypt-ssleay-perl. Preparing to unpack .../libcrypt-ssleay-perl_0.58-1+b2_amd64.deb ... Unpacking libcrypt-ssleay-perl (0.58-1+b2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../libparams-util-perl_1.07-2+b1_amd64.deb ... Unpacking libparams-util-perl (1.07-2+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../libsub-install-perl_0.928-1_all.deb ... Unpacking libsub-install-perl (0.928-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../libdata-optlist-perl_0.109-1_all.deb ... Unpacking libdata-optlist-perl (0.109-1) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../libmro-compat-perl_0.12-1_all.deb ... Unpacking libmro-compat-perl (0.12-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../libsub-exporter-perl_0.986-1_all.deb ... Unpacking libsub-exporter-perl (0.986-1) ... Selecting previously unselected package libdata-section-perl. Preparing to unpack .../libdata-section-perl_0.200006-1_all.deb ... Unpacking libdata-section-perl (0.200006-1) ... Selecting previously unselected package libdate-calc-perl. Preparing to unpack .../libdate-calc-perl_6.3-2_all.deb ... Unpacking libdate-calc-perl (6.3-2) ... Selecting previously unselected package libdate-calc-xs-perl. Preparing to unpack .../libdate-calc-xs-perl_6.3-2_amd64.deb ... Unpacking libdate-calc-xs-perl (6.3-2) ... Selecting previously unselected package libdate-manip-perl. Preparing to unpack .../libdate-manip-perl_6.47-1_all.deb ... Unpacking libdate-manip-perl (6.47-1) ... Selecting previously unselected package libdbd-mysql-perl. Preparing to unpack .../libdbd-mysql-perl_4.028-2+deb8u2_amd64.deb ... Unpacking libdbd-mysql-perl (4.028-2+deb8u2) ... Selecting previously unselected package libdbd-pg-perl. Preparing to unpack .../libdbd-pg-perl_3.4.2-1_amd64.deb ... Unpacking libdbd-pg-perl (3.4.2-1) ... Selecting previously unselected package libpadwalker-perl. Preparing to unpack .../libpadwalker-perl_1.98-1+b1_amd64.deb ... Unpacking libpadwalker-perl (1.98-1+b1) ... Selecting previously unselected package libdevel-caller-perl. Preparing to unpack .../libdevel-caller-perl_2.06-1+b2_amd64.deb ... Unpacking libdevel-caller-perl (2.06-1+b2) ... Selecting previously unselected package libdevel-lexalias-perl. Preparing to unpack .../libdevel-lexalias-perl_0.05-1+b2_amd64.deb ... Unpacking libdevel-lexalias-perl (0.05-1+b2) ... Selecting previously unselected package libdigest-perl-md5-perl. Preparing to unpack .../libdigest-perl-md5-perl_1.9-1_all.deb ... Unpacking libdigest-perl-md5-perl (1.9-1) ... Selecting previously unselected package libfile-slurp-tiny-perl. Preparing to unpack .../libfile-slurp-tiny-perl_0.003-1_all.deb ... Unpacking libfile-slurp-tiny-perl (0.003-1) ... Selecting previously unselected package libfont-afm-perl. Preparing to unpack .../libfont-afm-perl_1.20-1_all.deb ... Unpacking libfont-afm-perl (1.20-1) ... Selecting previously unselected package libfreezethaw-perl. Preparing to unpack .../libfreezethaw-perl_0.5001-1_all.deb ... Unpacking libfreezethaw-perl (0.5001-1) ... Selecting previously unselected package libsvg-perl. Preparing to unpack .../libsvg-perl_2.59-1_all.deb ... Unpacking libsvg-perl (2.59-1) ... Selecting previously unselected package libgd-svg-perl. Preparing to unpack .../libgd-svg-perl_0.33-1_all.deb ... Unpacking libgd-svg-perl (0.33-1) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../libglib2.0-data_2.42.1-1_all.deb ... Unpacking libglib2.0-data (2.42.1-1) ... Selecting previously unselected package libheap-perl. Preparing to unpack .../libheap-perl_0.80-2_all.deb ... Unpacking libheap-perl (0.80-2) ... Selecting previously unselected package libgraph-perl. Preparing to unpack .../libgraph-perl_1%3a0.96-1.1_all.deb ... Unpacking libgraph-perl (1:0.96-1.1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../libio-pty-perl_1%3a1.08-1+b4_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1+b4) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../libipc-run-perl_0.92-1+deb8u1_all.deb ... Unpacking libipc-run-perl (0.92-1+deb8u1) ... Selecting previously unselected package libxml-twig-perl. Preparing to unpack .../libxml-twig-perl_1%3a3.48-1_all.deb ... Unpacking libxml-twig-perl (1:3.48-1) ... Selecting previously unselected package libxml-xpath-perl. Preparing to unpack .../libxml-xpath-perl_1.13-7_all.deb ... Unpacking libxml-xpath-perl (1.13-7) ... Selecting previously unselected package libparse-recdescent-perl. Preparing to unpack .../libparse-recdescent-perl_1.967009+dfsg-1_all.deb ... Unpacking libparse-recdescent-perl (1.967009+dfsg-1) ... Selecting previously unselected package libgraphviz-perl. Preparing to unpack .../libgraphviz-perl_2.16-1_all.deb ... Unpacking libgraphviz-perl (2.16-1) ... Selecting previously unselected package libguard-perl. Preparing to unpack .../libguard-perl_1.022-2+b1_amd64.deb ... Unpacking libguard-perl (1.022-2+b1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../libhtml-form-perl_6.03-1_all.deb ... Unpacking libhtml-form-perl (6.03-1) ... Selecting previously unselected package libhtml-format-perl. Preparing to unpack .../libhtml-format-perl_2.11-1_all.deb ... Unpacking libhtml-format-perl (2.11-1) ... Selecting previously unselected package libhtml-tableextract-perl. Preparing to unpack .../libhtml-tableextract-perl_2.11-1_all.deb ... Unpacking libhtml-tableextract-perl (2.11-1) ... Selecting previously unselected package libindirect-perl. Preparing to unpack .../libindirect-perl_0.33-1_amd64.deb ... Unpacking libindirect-perl (0.33-1) ... Selecting previously unselected package libio-sessiondata-perl. Preparing to unpack .../libio-sessiondata-perl_1.03-1_all.deb ... Unpacking libio-sessiondata-perl (1.03-1) ... Selecting previously unselected package libio-stringy-perl. Preparing to unpack .../libio-stringy-perl_2.110-5_all.deb ... Unpacking libio-stringy-perl (2.110-5) ... Selecting previously unselected package libjcode-pm-perl. Preparing to unpack .../libjcode-pm-perl_2.06-1_amd64.deb ... Unpacking libjcode-pm-perl (2.06-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../libjs-jquery_1.7.2+dfsg-3.2_all.deb ... Unpacking libjs-jquery (1.7.2+dfsg-3.2) ... Selecting previously unselected package libjson-xs-perl. Preparing to unpack .../libjson-xs-perl_2.340-1+b2_amd64.deb ... Unpacking libjson-xs-perl (2.340-1+b2) ... Selecting previously unselected package liblog-message-perl. Preparing to unpack .../liblog-message-perl_0.8-1_all.deb ... Unpacking liblog-message-perl (0.8-1) ... Selecting previously unselected package liblog-message-simple-perl. Preparing to unpack .../liblog-message-simple-perl_0.10-2_all.deb ... Unpacking liblog-message-simple-perl (0.10-2) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../libnet-smtp-ssl-perl_1.01-3_all.deb ... Unpacking libnet-smtp-ssl-perl (1.01-3) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../libmailtools-perl_2.13-1_all.deb ... Unpacking libmailtools-perl (2.13-1) ... Selecting previously unselected package libmath-derivative-perl. Preparing to unpack .../libmath-derivative-perl_0.01-6_all.deb ... Unpacking libmath-derivative-perl (0.01-6) ... Selecting previously unselected package libmath-spline-perl. Preparing to unpack .../libmath-spline-perl_0.02-1_all.deb ... Unpacking libmath-spline-perl (0.02-1) ... Selecting previously unselected package libmime-tools-perl. Preparing to unpack .../libmime-tools-perl_5.505-1_all.deb ... Unpacking libmime-tools-perl (5.505-1) ... Selecting previously unselected package libmldbm-perl. Preparing to unpack .../libmldbm-perl_2.05-1_all.deb ... Unpacking libmldbm-perl (2.05-1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../libmodule-build-perl_0.421000-2+deb8u1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.421000-2+deb8u1) ... Selecting previously unselected package libmodule-pluggable-perl. Preparing to unpack .../libmodule-pluggable-perl_5.1-1_all.deb ... Unpacking libmodule-pluggable-perl (5.1-1) ... Selecting previously unselected package libmodule-signature-perl. Preparing to unpack .../libmodule-signature-perl_0.73-1+deb8u2_all.deb ... Unpacking libmodule-signature-perl (0.73-1+deb8u2) ... Selecting previously unselected package libmultidimensional-perl. Preparing to unpack .../libmultidimensional-perl_0.010-1+b2_amd64.deb ... Unpacking libmultidimensional-perl (0.010-1+b2) ... Selecting previously unselected package libole-storage-lite-perl. Preparing to unpack .../libole-storage-lite-perl_0.19-1_all.deb ... Unpacking libole-storage-lite-perl (0.19-1) ... Selecting previously unselected package libossp-uuid-perl. Preparing to unpack .../libossp-uuid-perl_1.6.2-1.5+b1_amd64.deb ... Unpacking libossp-uuid-perl (1.6.2-1.5+b1) ... Selecting previously unselected package libpackage-constants-perl. Preparing to unpack .../libpackage-constants-perl_0.04-1_all.deb ... Unpacking libpackage-constants-perl (0.04-1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../libpaper-utils_1.1.24+nmu4_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4) ... Selecting previously unselected package libpod-latex-perl. Preparing to unpack .../libpod-latex-perl_0.61-1_all.deb ... Adding 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Adding 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-1) ... Selecting previously unselected package libregexp-common-perl. Preparing to unpack .../libregexp-common-perl_2013031301-1_all.deb ... Unpacking libregexp-common-perl (2013031301-1) ... Selecting previously unselected package libpod-readme-perl. Preparing to unpack .../libpod-readme-perl_0.11-1_all.deb ... Unpacking libpod-readme-perl (0.11-1) ... Selecting previously unselected package libpostscript-perl. Preparing to unpack .../libpostscript-perl_0.06-2_all.deb ... Unpacking libpostscript-perl (0.06-2) ... Selecting previously unselected package libsasl2-modules:amd64. Preparing to unpack .../libsasl2-modules_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libtask-weaken-perl. Preparing to unpack .../libtask-weaken-perl_1.04-1_all.deb ... Unpacking libtask-weaken-perl (1.04-1) ... Selecting previously unselected package libsoap-lite-perl. Preparing to unpack .../libsoap-lite-perl_1.11-1_all.deb ... Unpacking libsoap-lite-perl (1.11-1) ... Selecting previously unselected package libtext-template-perl. Preparing to unpack .../libtext-template-perl_1.46-1_all.deb ... Unpacking libtext-template-perl (1.46-1) ... Selecting previously unselected package libsoftware-license-perl. Preparing to unpack .../libsoftware-license-perl_0.103010-3_all.deb ... Unpacking libsoftware-license-perl (0.103010-3) ... Selecting previously unselected package libsort-naturally-perl. Preparing to unpack .../libsort-naturally-perl_1.03-1_all.deb ... Unpacking libsort-naturally-perl (1.03-1) ... Selecting previously unselected package libspreadsheet-writeexcel-perl. Preparing to unpack .../libspreadsheet-writeexcel-perl_2.40-1_all.deb ... Unpacking libspreadsheet-writeexcel-perl (2.40-1) ... Selecting previously unselected package libunicode-map-perl. Preparing to unpack .../libunicode-map-perl_0.112-11+b1_amd64.deb ... Unpacking libunicode-map-perl (0.112-11+b1) ... Selecting previously unselected package libspreadsheet-parseexcel-perl. Preparing to unpack .../libspreadsheet-parseexcel-perl_0.6500-1_all.deb ... Unpacking libspreadsheet-parseexcel-perl (0.6500-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../libsub-name-perl_0.12-1_amd64.deb ... Unpacking libsub-name-perl (0.12-1) ... Selecting previously unselected package libtree-dagnode-perl. Preparing to unpack .../libtree-dagnode-perl_1.22-1_all.deb ... Unpacking libtree-dagnode-perl (1.22-1) ... Selecting previously unselected package libsvg-graph-perl. Preparing to unpack .../libsvg-graph-perl_0.02-2_all.deb ... Unpacking libsvg-graph-perl (0.02-2) ... Selecting previously unselected package libterm-ui-perl. Preparing to unpack .../libterm-ui-perl_0.42-1_all.deb ... Unpacking libterm-ui-perl (0.42-1) ... Selecting previously unselected package libtext-soundex-perl. Preparing to unpack .../libtext-soundex-perl_3.4-1+b2_amd64.deb ... Unpacking libtext-soundex-perl (3.4-1+b2) ... Selecting previously unselected package libtie-ixhash-perl. Preparing to unpack .../libtie-ixhash-perl_1.23-1_all.deb ... Unpacking libtie-ixhash-perl (1.23-1) ... Selecting previously unselected package libtype-tiny-xs-perl. Preparing to unpack .../libtype-tiny-xs-perl_0.010-1_amd64.deb ... Unpacking libtype-tiny-xs-perl (0.010-1) ... Selecting previously unselected package libxml-perl. Preparing to unpack .../libxml-perl_0.08-2_all.deb ... Unpacking libxml-perl (0.08-2) ... Selecting previously unselected package libxml-regexp-perl. Preparing to unpack .../libxml-regexp-perl_0.04-1_all.deb ... Unpacking libxml-regexp-perl (0.04-1) ... Selecting previously unselected package libxml-dom-perl. Preparing to unpack .../libxml-dom-perl_1.44-1_all.deb ... Unpacking libxml-dom-perl (1.44-1) ... Selecting previously unselected package libxml-xpathengine-perl. Preparing to unpack .../libxml-xpathengine-perl_0.13-1_all.deb ... Unpacking libxml-xpathengine-perl (0.13-1) ... Selecting previously unselected package libxml-dom-xpath-perl. Preparing to unpack .../libxml-dom-xpath-perl_0.14-1_all.deb ... Unpacking libxml-dom-xpath-perl (0.14-1) ... Selecting previously unselected package libxml-filter-buffertext-perl. Preparing to unpack .../libxml-filter-buffertext-perl_1.01-5_all.deb ... Unpacking libxml-filter-buffertext-perl (1.01-5) ... Selecting previously unselected package libxml-libxslt-perl. Preparing to unpack .../libxml-libxslt-perl_1.92-1+b1_amd64.deb ... Unpacking libxml-libxslt-perl (1.92-1+b1) ... Selecting previously unselected package libxml-sax-writer-perl. Preparing to unpack .../libxml-sax-writer-perl_0.54-1_all.deb ... Unpacking libxml-sax-writer-perl (0.54-1) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../libxml-writer-perl_0.625-1_all.deb ... Unpacking libxml-writer-perl (0.625-1) ... Selecting previously unselected package libxmlrpc-lite-perl. Preparing to unpack .../libxmlrpc-lite-perl_0.717-1_all.deb ... Unpacking libxmlrpc-lite-perl (0.717-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../libyaml-libyaml-perl_0.41-6_amd64.deb ... Unpacking libyaml-libyaml-perl (0.41-6) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../libyaml-perl_1.13-1_all.deb ... Unpacking libyaml-perl (1.13-1) ... Selecting previously unselected package mafft. Preparing to unpack .../mafft_7.205-1_amd64.deb ... Unpacking mafft (7.205-1) ... Selecting previously unselected package maq. Preparing to unpack .../archives/maq_0.7.1-5_amd64.deb ... Unpacking maq (0.7.1-5) ... Selecting previously unselected package muscle. Preparing to unpack .../muscle_1%3a3.8.31-1_amd64.deb ... Unpacking muscle (1:3.8.31-1) ... Selecting previously unselected package mustang. Preparing to unpack .../mustang_3.2.2-1_amd64.deb ... Unpacking mustang (3.2.2-1) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../ncbi-blast+_2.2.29-3_amd64.deb ... Unpacking ncbi-blast+ (2.2.29-3) ... Selecting previously unselected package perl-doc. Preparing to unpack .../perl-doc_5.20.2-3+deb8u11_all.deb ... Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.20.2-3+deb8u11) ... Selecting previously unselected package perl-tk. Preparing to unpack .../perl-tk_1%3a804.032-3+b3_amd64.deb ... Unpacking perl-tk (1:804.032-3+b3) ... Selecting previously unselected package phyml. Preparing to unpack .../phyml_2%3a20120412-2_amd64.deb ... Unpacking phyml (2:20120412-2) ... Selecting previously unselected package poa. Preparing to unpack .../poa_2.0+20060928-3_amd64.deb ... Unpacking poa (2.0+20060928-3) ... Selecting previously unselected package prank. Preparing to unpack .../prank_0.0.140110-1_amd64.deb ... Unpacking prank (0.0.140110-1) ... Selecting previously unselected package primer3. Preparing to unpack .../primer3_2.3.6-1_amd64.deb ... Unpacking primer3 (2.3.6-1) ... Selecting previously unselected package probalign. Preparing to unpack .../probalign_1.4-3_amd64.deb ... Unpacking probalign (1.4-3) ... Selecting previously unselected package probcons. Preparing to unpack .../probcons_1.12-9_amd64.deb ... Unpacking probcons (1.12-9) ... Selecting previously unselected package proda. Preparing to unpack .../archives/proda_1.0-8_amd64.deb ... Unpacking proda (1.0-8) ... Selecting previously unselected package rename. Preparing to unpack .../archives/rename_0.20-3_all.deb ... Unpacking rename (0.20-3) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../rubygems-integration_1.8_all.deb ... Unpacking rubygems-integration (1.8) ... Selecting previously unselected package libruby2.1:amd64. Preparing to unpack .../libruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking libruby2.1:amd64 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby2.1. Preparing to unpack .../ruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking ruby2.1 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby. Preparing to unpack .../ruby_1%3a2.1.5+deb8u2_all.deb ... Unpacking ruby (1:2.1.5+deb8u2) ... Selecting previously unselected package samtools. Preparing to unpack .../samtools_0.1.19-1_amd64.deb ... Unpacking samtools (0.1.19-1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../shared-mime-info_1.3-1_amd64.deb ... Unpacking shared-mime-info (1.3-1) ... Selecting previously unselected package sim4. Preparing to unpack .../sim4_0.0.20121010-1_amd64.deb ... Unpacking sim4 (0.0.20121010-1) ... Selecting previously unselected package ssl-cert. Preparing to unpack .../ssl-cert_1.0.35_all.deb ... Unpacking ssl-cert (1.0.35) ... Selecting previously unselected package t-coffee. Preparing to unpack .../t-coffee_11.00.8cbe486-1_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-1) ... Selecting previously unselected package tigr-glimmer. Preparing to unpack .../tigr-glimmer_3.02-3_amd64.deb ... Unpacking tigr-glimmer (3.02-3) ... Selecting previously unselected package tm-align. Preparing to unpack .../tm-align_20140601+dfsg-1_amd64.deb ... Unpacking tm-align (20140601+dfsg-1) ... Selecting previously unselected package wise-data. Preparing to unpack .../wise-data_2.4.1-17_all.deb ... Unpacking wise-data (2.4.1-17) ... Selecting previously unselected package wise. Preparing to unpack .../wise_2.4.1-17_amd64.deb ... Unpacking wise (2.4.1-17) ... Selecting previously unselected package xdg-user-dirs. Preparing to unpack .../xdg-user-dirs_0.15-2_amd64.deb ... Unpacking xdg-user-dirs (0.15-2) ... Selecting previously unselected package xml-core. Preparing to unpack .../xml-core_0.13+nmu2_all.deb ... Unpacking xml-core (0.13+nmu2) ... Selecting previously unselected package bowtie. Preparing to unpack .../bowtie_1.1.1-2_amd64.deb ... Unpacking bowtie (1.1.1-2) ... Selecting previously unselected package libev-perl. Preparing to unpack .../libev-perl_4.18-1_amd64.deb ... Unpacking libev-perl (4.18-1) ... Selecting previously unselected package libset-scalar-perl. Preparing to unpack .../libset-scalar-perl_1.29-1_all.deb ... Unpacking libset-scalar-perl (1.29-1) ... Selecting previously unselected package lynx-cur. Preparing to unpack .../lynx-cur_2.8.9dev1-2+deb8u1_amd64.deb ... Unpacking lynx-cur (2.8.9dev1-2+deb8u1) ... Selecting previously unselected package lynx. Preparing to unpack .../lynx_2.8.9dev1-2+deb8u1_all.deb ... Unpacking lynx (2.8.9dev1-2+deb8u1) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up perl (5.20.2-3+deb8u11) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up mime-support (3.58) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libapr1:amd64 (1.5.1-3) ... Setting up libaprutil1:amd64 (1.5.4-1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up apache2-bin (2.4.10-10+deb8u12) ... Setting up apache2-utils (2.4.10-10+deb8u12) ... Setting up apache2-data (2.4.10-10+deb8u12) ... Setting up apache2 (2.4.10-10+deb8u12) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: policy-rc.d denied execution of start. Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fonts-liberation (1.07.4-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up fonts-droid (1:4.4.4r2-6) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libcups2:amd64 (1.7.5-11+deb8u2) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Setting up libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libvpx1:amd64 (1.3.0-3+deb8u1) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up libgd3:amd64 (2.1.0-5+deb8u11) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up mysql-common (5.5.60-0+deb8u1) ... Setting up libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up libthai-data (0.1.21-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libpq5:amd64 (9.4.18-0+deb8u1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up poppler-data (0.4.7-1) ... Setting up sgml-base (1.26+nmu4) ... Setting up iproute2 (3.16.0-2) ... Setting up ifupdown (0.7.53.1) ... Creating /etc/network/interfaces. Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up netbase (5.3) ... Setting up dbus (1.8.22-0+deb8u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up file (1:5.22+15-2+deb8u4) ... Setting up krb5-locales (1.12.1+dfsg-19+deb8u4) ... Setting up amap-align (2.2-4) ... Setting up bedtools (2.21.0-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up libbio-perl-run-perl (1.6.9-2) ... Setting up bioperl-run (1.6.9-2) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up bwa (0.7.10-1) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done. Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up dialign (2.2.1-7) ... Setting up dialign-tx-data (1.0.2-7) ... Setting up dialign-tx (1.0.2-7) ... Setting up libhpdf-2.2.1 (2.2.1-1.1) ... Setting up emboss-lib (6.6.0+dfsg-1) ... Setting up emboss-data (6.6.0+dfsg-1) ... Setting up emboss (6.6.0+dfsg-1) ... Setting up exonerate (2.2.0-6) ... Setting up libgd-perl (2.53-1+b1) ... Setting up libbio-graphics-perl (2.39-2) ... Setting up libcgi-session-perl (4.48-1+deb8u1) ... Setting up libjson-perl (2.61-1) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up liburi-perl (1.64-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libterm-readkey-perl (2.32-1+b1) ... Setting up sqlite3 (3.8.7.1-1+deb8u2) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up libanyevent-perl (7.070-3) ... Setting up libanyevent-cachedns-perl (0.08-1) ... Setting up libcommon-sense-perl (3.73-2+b3) ... Setting up libanyevent-http-perl (2.21-1) ... Setting up libstring-approx-perl (3.27-1+b2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-simple-perl (2.20-1) ... Setting up libjbig2dec0 (0.13-4~deb8u2) ... Setting up libgs9-common (9.06~dfsg-2+deb8u7) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up graphviz (2.38.0-7) ... Setting up hmmer (3.1b1-3) ... Setting up infernal (1.1.1-2) ... Setting up javascript-common (11) ... apache2_invoke: Enable configuration javascript-common invoke-rc.d: policy-rc.d denied execution of reload. Setting up kalign (1:2.03+20110620-2) ... Setting up liberror-perl (0.17-1.1) ... Setting up libipc-sharelite-perl (0.17-3+b2) ... Setting up libcache-cache-perl (1.07-2) ... Setting up libace-perl (1.92-3+b1) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up libalgorithm-munkres-perl (0.08-2) ... Setting up libperl5.20 (5.20.2-3+deb8u11) ... Setting up libdevel-symdump-perl (2.12-1) ... Setting up libarchive-extract-perl (0.72-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up libsub-exporter-progressive-perl (0.001011-1) ... Setting up libdevel-globaldestruction-perl (0.13-1) ... Setting up libparams-classify-perl (0.013-4+b2) ... Setting up libmodule-runtime-perl (0.014-1) ... Setting up libimport-into-perl (1.002004-1) ... Setting up librole-tiny-perl (1.003004-1) ... Setting up libstrictures-perl (1.005005-1) ... Setting up libmoo-perl (1.006001-1) ... Setting up libexporter-tiny-perl (0.038-2) ... Setting up libtype-tiny-perl (1.000004-1) ... Setting up libarray-compare-perl (2.11-1) ... Setting up libasync-interrupt-perl (1.20-1+b1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libb-hooks-op-check-perl (0.19-2+b1) ... Setting up liblexical-sealrequirehints-perl (0.007-1+b2) ... Setting up libbareword-filehandles-perl (0.003-1+b2) ... Setting up libbio-asn1-entrezgene-perl (1.700-1) ... Setting up libstaden-read1 (1.13.7-1) ... Setting up libbio-scf-perl (1.03-2+b1) ... Setting up libcarp-clan-perl (6.04-1) ... Setting up libbit-vector-perl (7.3-1+b2) ... Setting up libbsd-resource-perl (1.2907-1+b2) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libclass-xsaccessor-perl (1.19-2+b4) ... Setting up libclone-perl (0.37-1+b1) ... Setting up libconvert-binary-c-perl (0.76-3+b2) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libdate-calc-perl (6.3-2) ... Setting up libdate-calc-xs-perl (6.3-2) ... Setting up libdate-manip-perl (6.47-1) ... Setting up libdbd-mysql-perl (4.028-2+deb8u2) ... Setting up libdbd-pg-perl (3.4.2-1) ... Setting up libpadwalker-perl (1.98-1+b1) ... Setting up libdevel-caller-perl (2.06-1+b2) ... Setting up libdevel-lexalias-perl (0.05-1+b2) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up libsvg-perl (2.59-1) ... Setting up libgd-svg-perl (0.33-1) ... Setting up libglib2.0-data (2.42.1-1) ... Setting up libheap-perl (0.80-2) ... Setting up libgraph-perl (1:0.96-1.1) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-run-perl (0.92-1+deb8u1) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libguard-perl (1.022-2+b1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhtml-tableextract-perl (2.11-1) ... Setting up libindirect-perl (0.33-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up libjson-xs-perl (2.340-1+b2) ... Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmath-derivative-perl (0.01-6) ... Setting up libmath-spline-perl (0.02-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up libmldbm-perl (2.05-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libmultidimensional-perl (0.010-1+b2) ... Setting up libole-storage-lite-perl (0.19-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libpostscript-perl (0.06-2) ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libunicode-map-perl (0.112-11+b1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libsub-name-perl (0.12-1) ... Setting up libtree-dagnode-perl (1.22-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libtie-ixhash-perl (1.23-1) ... Setting up libtype-tiny-xs-perl (0.010-1) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libxml-libxslt-perl (1.92-1+b1) ... Setting up libxml-sax-writer-perl (0.54-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libyaml-libyaml-perl (0.41-6) ... Setting up libyaml-perl (1.13-1) ... Setting up mafft (7.205-1) ... Setting up maq (0.7.1-5) ... Setting up muscle (1:3.8.31-1) ... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up perl-doc (5.20.2-3+deb8u11) ... Setting up perl-tk (1:804.032-3+b3) ... Setting up phyml (2:20120412-2) ... Setting up poa (2.0+20060928-3) ... Setting up prank (0.0.140110-1) ... Setting up primer3 (2.3.6-1) ... Setting up probalign (1.4-3) ... Setting up probcons (1.12-9) ... Setting up proda (1.0-8) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up samtools (0.1.19-1) ... Setting up shared-mime-info (1.3-1) ... Setting up sim4 (0.0.20121010-1) ... Setting up ssl-cert (1.0.35) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tigr-glimmer (3.02-3) ... Setting up tm-align (20140601+dfsg-1) ... Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up xdg-user-dirs (0.15-2) ... Setting up xml-core (0.13+nmu2) ... Setting up bowtie (1.1.1-2) ... Setting up libev-perl (4.18-1) ... Setting up libset-scalar-perl (1.29-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Setting up libwww-perl (6.08-1) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libvm-ec2-perl (1.28-1) ... Setting up gbrowse (2.54+dfsg-3) ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: policy-rc.d denied execution of reload. Setting up libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... apache2_invoke: Enable module perl invoke-rc.d: policy-rc.d denied execution of restart. Setting up libapache-dbi-perl (1.12-1) ... Setting up libapache2-reload-perl (0.12-3) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libsoap-lite-perl (1.11-1) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-dom-perl (1.44-1) ... Setting up libxml-dom-xpath-perl (0.14-1) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libgs9 (9.06~dfsg-2+deb8u7) ... Setting up ghostscript (9.06~dfsg-2+deb8u7) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for sgml-base (1.26+nmu4) ... 1m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', '-y', 'install', 'gbrowse=2.54+dfsg-3'] 1m26.1s INFO: Running scripts post_install 1m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_install_exceptions'] 1m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_install_exceptions'] 1m26.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 1m27.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 1m30.7s ERROR: WARN: Broken symlinks: /usr/share/rubygems-integration/2.0.0 -> 2.0 (rubygems-integration) /usr/share/gbrowse/htdocs/i -> debian/gbrowse/var/cache/gbrowse/images (gbrowse) 1m32.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', '-ac', '--ignore-obsolete'] 1m36.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', '-ac', '--ignore-obsolete'] 1m36.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m36.3s DUMP: 0.15.6 1m36.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m36.3s INFO: Running adequate version 0.15.6 now. 1m36.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'gbrowse'] 1m36.8s DUMP: gbrowse: broken-symlink /usr/share/gbrowse/htdocs/i -> debian/gbrowse/var/cache/gbrowse/images 1m36.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'gbrowse'] 1m36.8s ERROR: WARN: Inadequate results from running adequate! gbrowse: broken-symlink /usr/share/gbrowse/htdocs/i -> debian/gbrowse/var/cache/gbrowse/images 1m36.8s ERROR: WARN: Running adequate resulted in less interesting tags found: broken-symlink 1m36.8s INFO: Running scripts pre_remove 1m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m36.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m36.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m36.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m36.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m43.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m43.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_exceptions'] 1m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/pre_remove_exceptions'] 1m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m44.2s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed amap-align amap-align 2.2-4 install ok installed apache2 apache2 2.4.10-10+deb8u12 install ok installed apache2-bin apache2-bin 2.4.10-10+deb8u12 install ok installed apache2-data apache2-data 2.4.10-10+deb8u12 install ok installed apache2-utils apache2-utils 2.4.10-10+deb8u12 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bedtools bedtools 2.21.0-1 install ok installed bioperl bioperl 1.6.924-1 install ok installed bioperl-run bioperl-run 1.6.9-2 install ok installed blast2 blast2 1:2.2.26.20120620-8 install ok installed bowtie bowtie 1.1.1-2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed bwa bwa 0.7.10-1 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed clustalo clustalo 1.2.1-1 install ok installed clustalw clustalw 2.1+lgpl-4 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed dbus dbus 1.8.22-0+deb8u1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed dialign dialign 2.2.1-7 install ok installed dialign-tx dialign-tx 1.0.2-7 install ok installed dialign-tx-data dialign-tx-data 1.0.2-7 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed emboss emboss 6.6.0+dfsg-1 install ok installed emboss-data emboss-data 6.6.0+dfsg-1 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-1 install ok installed exonerate exonerate 2.2.0-6 install ok installed file file 1:5.22+15-2+deb8u4 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed fonts-droid fonts-droid 1:4.4.4r2-6 install ok installed fonts-liberation fonts-liberation 1.07.4-1 install ok installed gbrowse gbrowse 2.54+dfsg-3 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed ghostscript ghostscript 9.06~dfsg-2+deb8u7 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed graphviz graphviz 2.38.0-7 install ok installed grep grep 2.20-4.1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.2 install ok installed gzip gzip 1.6-4 install ok installed hmmer hmmer 3.1b1-3 install ok installed hostname hostname 3.15 install ok installed ifupdown ifupdown 0.7.53.1 install ok installed infernal infernal 1.1.1-2 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed iproute2 iproute2 3.16.0-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.1-6+deb8u3 install ok installed isc-dhcp-common isc-dhcp-common 4.3.1-6+deb8u3 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-2 install ok installed krb5-locales krb5-locales 1.12.1+dfsg-19+deb8u4 install ok installed libace-perl libace-perl 1.92-3+b1 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.09-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.02-3 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-3+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-2 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-1 install ok installed libanyevent-http-perl libanyevent-http-perl 2.21-1 install ok installed libanyevent-perl libanyevent-perl 7.070-3 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-1 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.9~1624218-2+deb8u2 install ok installed libapache2-reload-perl libapache2-reload-perl 0.12-3 install ok installed libapr1:amd64 libapr1 1.5.1-3 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libarchive-extract-perl libarchive-extract-perl 0.72-1 install ok installed libargtable2-0 libargtable2-0 12-1.1 install ok installed libarray-compare-perl libarray-compare-perl 2.11-1 install ok installed libasync-interrupt-perl libasync-interrupt-perl 1.20-1+b1 install ok installed libatm1:amd64 libatm1 1:2.5.1-1.5 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.31-5 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.31-5 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.31-5 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.19-2+b1 install ok installed libbareword-filehandles-perl libbareword-filehandles-perl 0.003-1+b2 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.700-1 install ok installed libbio-graphics-perl libbio-graphics-perl 2.39-2 install ok installed libbio-perl-perl libbio-perl-perl 1.6.924-1 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.6.9-2 install ok installed libbio-scf-perl libbio-scf-perl 1.03-2+b1 install ok installed libbit-vector-perl libbit-vector-perl 7.3-1+b2 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2907-1+b2 install ok installed libbsd0:amd64 libbsd0 0.7.0-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcache-cache-perl libcache-cache-perl 1.07-2 install ok installed libcairo2:amd64 libcairo2 1.14.0-2.1+deb8u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.4-2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcarp-clan-perl libcarp-clan-perl 6.04-1 install ok installed libcdt5 libcdt5 2.38.0-7 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.04-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.09-1 install ok installed libcgi-session-perl libcgi-session-perl 4.48-1+deb8u1 install ok installed libcgraph6 libcgraph6 2.38.0-7 install ok installed libclass-c3-perl libclass-c3-perl 0.26-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.13-2+b1 install ok installed libclass-inspector-perl libclass-inspector-perl 1.28-1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.11-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-2+b4 install ok installed libclone-perl libclone-perl 0.37-1+b1 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcommon-sense-perl libcommon-sense-perl 3.73-2+b3 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.76-3+b2 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.123-2 install ok installed libcpan-meta-perl libcpan-meta-perl 2.142690-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-2 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.58-1+b2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libcups2:amd64 libcups2 1.7.5-11+deb8u2 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.0.61-5+deb8u3 install ok installed libcupsimage2:amd64 libcupsimage2 1.7.5-11+deb8u2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.38.0-4+deb8u11 install ok installed libdata-optlist-perl libdata-optlist-perl 0.109-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdata-stag-perl libdata-stag-perl 0.13-1 install ok installed libdate-calc-perl libdate-calc-perl 6.3-2 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.3-2 install ok installed libdate-manip-perl libdate-manip-perl 6.47-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.028-2+deb8u2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.4.2-1 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.44-1 install ok installed libdbi-perl libdbi-perl 1.631-3+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.8.22-0+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-1+b2 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.13-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-1+b2 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.12-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed liberror-perl liberror-perl 0.17-1.1 install ok installed libev-perl libev-perl 4.18-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.038-2 install ok installed libfcgi-perl libfcgi-perl 0.77-1+deb8u1 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.003-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u2 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgd-perl libgd-perl 2.53-1+b1 install ok installed libgd-svg-perl libgd-svg-perl 0.33-1 install ok installed libgd3:amd64 libgd3 2.1.0-5+deb8u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.42.1-1+b1 install ok installed libglib2.0-data libglib2.0-data 2.42.1-1 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgomp1:amd64 libgomp1 4.9.2-10+deb8u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgraph-perl libgraph-perl 1:0.96-1.1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1~deb8u1 install ok installed libgraphviz-perl libgraphviz-perl 2.16-1 install ok installed libgs9 libgs9 9.06~dfsg-2+deb8u7 install ok installed libgs9-common libgs9-common 9.06~dfsg-2+deb8u7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u4 install ok installed libguard-perl libguard-perl 1.022-2+b1 install ok installed libgvc6 libgvc6 2.38.0-7 install ok installed libgvpr2 libgvpr2 2.38.0-7 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 0.9.35-2 install ok installed libheap-perl libheap-perl 0.80-2 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.11-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.11-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libice6:amd64 libice6 2:1.0.9-1+b1 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u2 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-10 install ok installed libimport-into-perl libimport-into-perl 1.002004-1 install ok installed libindirect-perl libindirect-perl 0.33-1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1+b4 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.110-5 install ok installed libipc-run-perl libipc-run-perl 0.92-1+deb8u1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-3+b2 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjbig2dec0 libjbig2dec0 0.13-4~deb8u2 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12 install ok installed libjs-jquery libjs-jquery 1.7.2+dfsg-3.2 install ok installed libjs-prototype libjs-prototype 1.7.1-3 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2 install ok installed libjson-perl libjson-perl 2.61-1 install ok installed libjson-xs-perl libjson-xs-perl 2.340-1+b2 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u4 install ok installed liblcms2-2:amd64 liblcms2-2 2.6-3+deb8u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u4 install ok installed liblexical-sealrequirehints-perl liblexical-sealrequirehints-perl 0.007-1+b2 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.33-2+b1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.11+b1 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-7.1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmagic1:amd64 libmagic1 1:5.22+15-2+deb8u4 install ok installed libmailtools-perl libmailtools-perl 2.13-1 install ok installed libmath-derivative-perl libmath-derivative-perl 0.01-6 install ok installed libmath-spline-perl libmath-spline-perl 0.02-1 install ok installed libmime-tools-perl libmime-tools-perl 5.505-1 install ok installed libmldbm-perl libmldbm-perl 2.05-1 install ok installed libmodule-build-perl libmodule-build-perl 0.421000-2+deb8u1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.1-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-1 install ok installed libmodule-signature-perl libmodule-signature-perl 0.73-1+deb8u2 install ok installed libmoo-perl libmoo-perl 1.006001-1 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libmultidimensional-perl libmultidimensional-perl 0.010-1+b2 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.60-0+deb8u1 install ok installed libncbi6:amd64 libncbi6 6.1.20120620-8 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.01-3 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-1 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b1 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpackage-constants-perl libpackage-constants-perl 0.04-1 install ok installed libpadwalker-perl libpadwalker-perl 1.98-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu4 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu4 install ok installed libparams-classify-perl libparams-classify-perl 0.013-4+b2 install ok installed libparams-util-perl libparams-util-perl 1.07-2+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967009+dfsg-1 install ok installed libpathplan4 libpathplan4 2.38.0-7 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libperl5.20 libperl5.20 5.20.2-3+deb8u11 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpod-latex-perl libpod-latex-perl 0.61-1 install ok installed libpod-readme-perl libpod-readme-perl 0.11-1 install ok installed libpostscript-perl libpostscript-perl 0.06-2 install ok installed libpq5:amd64 libpq5 9.4.18-0+deb8u1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libregexp-common-perl libregexp-common-perl 2013031301-1 install ok installed librole-tiny-perl librole-tiny-perl 1.003004-1 install ok installed librtmp1:amd64 librtmp1 2.4+20150115.gita107cef-1+deb8u1 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u1 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libset-scalar-perl libset-scalar-perl 1.29-1 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsoap-lite-perl libsoap-lite-perl 1.11-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103010-3 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.4.3-4.1+deb8u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libstaden-read1 libstaden-read1 1.13.7-1 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0607-1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libstrictures-perl libstrictures-perl 1.005005-1 install ok installed libstring-approx-perl libstring-approx-perl 3.27-1+b2 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001011-1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.12-1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-2 install ok installed libsvg-perl libsvg-perl 2.59-1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libterm-readkey-perl libterm-readkey-perl 2.32-1+b1 install ok installed libterm-ui-perl libterm-ui-perl 0.42-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b2 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-1 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.22-1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.000004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.010-1 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libunicode-map-perl libunicode-map-perl 0.112-11+b1 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-1 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u1 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u1 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.12-2+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+b1 install ok installed libxdot4 libxdot4 2.38.0-7 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxml-dom-perl libxml-dom-perl 1.44-1 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-1 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-5 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0116+dfsg-1+deb8u2 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.92-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.41-3 install ok installed libxml-perl libxml-perl 0.08-2 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.54-1 install ok installed libxml-simple-perl libxml-simple-perl 2.20-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.48-1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.13-7 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u6 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.28-2+deb8u3 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.6-3 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.41-6 install ok installed libyaml-perl libyaml-perl 1.13-1 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed lynx lynx 2.8.9dev1-2+deb8u1 install ok installed lynx-cur lynx-cur 2.8.9dev1-2+deb8u1 install ok installed mafft mafft 7.205-1 install ok installed maq maq 0.7.1-5 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed muscle muscle 1:3.8.31-1 install ok installed mustang mustang 3.2.2-1 install ok installed mysql-common mysql-common 5.5.60-0+deb8u1 install ok installed ncbi-blast+ ncbi-blast+ 2.2.29-3 install ok installed ncbi-data ncbi-data 6.1.20120620-8 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed openssl openssl 1.0.1t-1+deb8u8 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl perl 5.20.2-3+deb8u11 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed perl-doc perl-doc 5.20.2-3+deb8u11 install ok installed perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed perl-tk perl-tk 1:804.032-3+b3 install ok installed phyml phyml 2:20120412-2 install ok installed poa poa 2.0+20060928-3 install ok installed poppler-data poppler-data 0.4.7-1 install ok installed prank prank 0.0.140110-1 install ok installed primer3 primer3 2.3.6-1 install ok installed probalign probalign 1.4-3 install ok installed probcons probcons 1.12-9 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed proda proda 1.0-8 install ok installed python python 2.7.9-1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python2.7 python2.7 2.7.9-2+deb8u1 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed rename rename 0.20-3 install ok installed ruby ruby 1:2.1.5+deb8u2 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed rubygems-integration rubygems-integration 1.8 install ok installed samtools samtools 0.1.19-1 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed sgml-base sgml-base 1.26+nmu4 install ok installed shared-mime-info shared-mime-info 1.3-1 install ok installed sim4 sim4 0.0.20121010-1 install ok installed sqlite3 sqlite3 3.8.7.1-1+deb8u2 install ok installed ssl-cert ssl-cert 1.0.35 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed t-coffee t-coffee 11.00.8cbe486-1 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tigr-glimmer tigr-glimmer 3.02-3 install ok installed tm-align tm-align 20140601+dfsg-1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed wise wise 2.4.1-17 install ok installed wise-data wise-data 2.4.1-17 install ok installed x11-common x11-common 1:7.7+7 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2 install ok installed xml-core xml-core 0.13+nmu2 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 1m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', 'remove', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blast2', 'bowtie', 'bwa', 'ca-certificates', 'clustalo', 'clustalw', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid', 'fonts-liberation', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'ifupdown', 'infernal', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libargtable2-0', 'libarray-compare-perl', 'libasync-interrupt-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libbareword-filehandles-perl', 'libbio-asn1-entrezgene-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcap-ng0:amd64', 'libcarp-clan-perl', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-meta-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libdata-optlist-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdns-export100', 'libencode-locale-perl', 'liberror-perl', 'libev-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libguard-perl', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libindirect-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libjasper1:amd64', 'libjbig0:amd64', 'libjbig2dec0', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-moreutils-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic1:amd64', 'libmailtools-perl', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmro-compat-perl', 'libmultidimensional-perl', 'libmysqlclient18:amd64', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libole-storage-lite-perl', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libperl5.20', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libpostscript-perl', 'libpq5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libregexp-common-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-scalar-perl', 'libsm6:amd64', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstaden-read1', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libtasn1-6:amd64', 'libterm-readkey-perl', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libunicode-map-perl', 'liburi-perl', 'libvm-ec2-perl', 'libvpx1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxtables10', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-cur', 'mafft', 'maq', 'mime-support', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-doc', 'perl-modules', 'perl-tk', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rename', 'ruby', 'ruby2.1', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'wise', 'wise-data', 'x11-common', 'xdg-user-dirs', 'xml-core', 'gbrowse'] 1m51.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation gbrowse ghostscript graphviz gsfonts hmmer ifupdown infernal iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libasync-interrupt-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap-ng0 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdns-export100 libencode-locale-perl liberror-perl libev-perl libexpat1 libexporter-tiny-perl libfcgi-perl libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libperl5.20 libpixman-1-0 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl librole-tiny-perl librtmp1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsm6 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libterm-readkey-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvm-ec2-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align wise wise-data x11-common xdg-user-dirs xml-core 0 upgraded, 0 newly installed, 383 to remove and 0 not upgraded. After this operation, 976 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29291 files and directories currently installed.) Removing amap-align (2.2-4) ... Removing gbrowse (2.54+dfsg-3) ... Conf gbrowse disabled. apache2_invoke prerm: Disable configuration gbrowse invoke-rc.d: policy-rc.d denied execution of reload. Removing apache2 (2.4.10-10+deb8u12) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing libapache2-reload-perl (0.12-3) ... Removing libapache-dbi-perl (1.12-1) ... Removing libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Removing apache2-bin (2.4.10-10+deb8u12) ... Removing apache2-data (2.4.10-10+deb8u12) ... Removing apache2-utils (2.4.10-10+deb8u12) ... Removing bedtools (2.21.0-1) ... Removing libbio-graphics-perl (2.39-2) ... Removing bioperl-run (1.6.9-2) ... Removing bioperl (1.6.924-1) ... Removing blast2 (1:2.2.26.20120620-8) ... Removing bowtie (1.1.1-2) ... Removing bwa (0.7.10-1) ... Removing ruby (1:2.1.5+deb8u2) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing rubygems-integration (1.8) ... Removing libgraphviz-perl (2.16-1) ... Removing libxml-xpath-perl (1.13-7) ... Removing clustalo (1.2.1-1) ... Removing clustalw (2.1+lgpl-4) ... Removing dbus (1.8.22-0+deb8u1) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing dialign (2.2.1-7) ... Removing dialign-tx (1.0.2-7) ... Removing dialign-tx-data (1.0.2-7) ... Removing emboss (6.6.0+dfsg-1) ... Removing emboss-data (6.6.0+dfsg-1) ... Removing emboss-lib (6.6.0+dfsg-1) ... Removing exonerate (2.2.0-6) ... Removing file (1:5.22+15-2+deb8u4) ... Removing graphviz (2.38.0-7) ... Removing libgvc6 (2.38.0-7) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing perl-tk (1:804.032-3+b3) ... Removing libxft2:amd64 (2.3.2-1) ... Removing libgd-svg-perl (0.33-1) ... Removing libgd-perl (2.53-1+b1) ... Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Removing fonts-dejavu-core (2.34-1) ... Removing fonts-droid (1:4.4.4r2-6) ... Removing ghostscript (9.06~dfsg-2+deb8u7) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Removing hmmer (3.1b1-3) ... Removing ifupdown (0.7.53.1) ... Removing infernal (1.1.1-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Removing iproute2 (3.16.0-2) ... Removing isc-dhcp-common (4.3.1-6+deb8u3) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-2) ... Removing krb5-locales (1.12.1+dfsg-19+deb8u4) ... Removing libace-perl (1.92-3+b1) ... Removing libsoftware-license-perl (0.103010-3) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.26-1) ... Removing libalgorithm-c3-perl (0.09-1) ... Removing libalgorithm-diff-xs-perl (0.04-3+b1) ... Removing libalgorithm-diff-perl (1.19.02-3) ... Removing libalgorithm-munkres-perl (0.08-2) ... Removing libvm-ec2-perl (1.28-1) ... Removing libanyevent-cachedns-perl (0.08-1) ... Removing libanyevent-http-perl (2.21-1) ... Removing libanyevent-perl (7.070-3) ... Removing libaprutil1-ldap:amd64 (1.5.4-1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Removing libaprutil1:amd64 (1.5.4-1) ... Removing libapr1:amd64 (1.5.1-3) ... Removing libarchive-extract-perl (0.72-1) ... Removing libargtable2-0 (12-1.1) ... Removing libarray-compare-perl (2.11-1) ... Removing libasync-interrupt-perl (1.20-1+b1) ... Removing libatm1:amd64 (1:2.5.1-1.5) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libgs9 (9.06~dfsg-2+deb8u7) ... Removing libmultidimensional-perl (0.010-1+b2) ... Removing libbareword-filehandles-perl (0.003-1+b2) ... Removing libb-hooks-op-check-perl (0.19-2+b1) ... Removing libbio-asn1-entrezgene-perl (1.700-1) ... Removing libbio-perl-run-perl (1.6.9-2) ... Removing libbio-perl-perl (1.6.924-1) ... Removing libbio-scf-perl (1.03-2+b1) ... Removing libdate-calc-xs-perl (6.3-2) ... Removing libdate-calc-perl (6.3-2) ... Removing libbit-vector-perl (7.3-1+b2) ... Removing libbsd-resource-perl (1.2907-1+b2) ... Removing lynx (2.8.9dev1-2+deb8u1) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Removing libbsd0:amd64 (0.7.0-2) ... Removing libcache-cache-perl (1.07-2) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcap-ng0:amd64 (0.7.4-2) ... Removing libcarp-clan-perl (6.04-1) ... Removing libgvpr2 (2.38.0-7) ... Removing libcgraph6 (2.38.0-7) ... Removing libcdt5 (2.38.0-7) ... Removing libcgi-fast-perl (1:2.04-1) ... Removing libcgi-pm-perl (4.09-1) ... Removing libcgi-session-perl (4.48-1+deb8u1) ... Removing libclass-c3-xs-perl (0.13-2+b1) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.11-1) ... Removing libclass-inspector-perl (1.28-1) ... Removing libmoo-perl (1.006001-1) ... Removing librole-tiny-perl (1.003004-1) ... Removing libclass-method-modifiers-perl (2.11-1) ... Removing libclass-xsaccessor-perl (1.19-2+b4) ... Removing libclone-perl (0.37-1+b1) ... Removing libjson-xs-perl (2.340-1+b2) ... Removing libev-perl (4.18-1) ... Removing libcommon-sense-perl (3.73-2+b3) ... Removing libconvert-binary-c-perl (0.76-3+b2) ... Removing libmime-tools-perl (5.505-1) ... Removing libconvert-binhex-perl (1.123-2) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.142690-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-2) ... Removing libcrypt-ssleay-perl (0.58-1+b2) ... Removing libstaden-read1 (1.13.7-1) ... Removing libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.109-1) ... Removing libdata-stag-perl (0.13-1) ... Removing libdate-manip-perl (6.47-1) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing libdbd-mysql-perl (4.028-2+deb8u2) ... Removing libdbd-pg-perl (3.4.2-1) ... Removing libdbd-sqlite3-perl (1.44-1) ... Removing libdbi-perl (1.631-3+b1) ... Removing libdevel-lexalias-perl (0.05-1+b2) ... Removing libdevel-caller-perl (2.06-1+b2) ... Removing libdevel-globaldestruction-perl (0.13-1) ... Removing libdevel-symdump-perl (2.12-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing liberror-perl (0.17-1.1) ... Removing ncbi-blast+ (2.2.29-3) ... Removing python (2.7.9-1) ... Removing python2.7 (2.7.9-2+deb8u1) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Removing libtype-tiny-perl (1.000004-1) ... Removing libexporter-tiny-perl (0.038-2) ... Removing libfcgi-perl (0.77-1+deb8u1) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Removing libsvg-graph-perl (0.02-2) ... Removing libtree-dagnode-perl (1.22-1) ... Removing libfile-slurp-tiny-perl (0.003-1) ... Removing libhtml-format-perl (2.11-1) ... Removing libfont-afm-perl (1.20-1) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Removing libfreezethaw-perl (0.5001-1) ... Removing xml-core (0.13+nmu2) ... Removing sgml-base (1.26+nmu4) ... Removing rename (0.20-3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing tm-align (20140601+dfsg-1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing wise (2.4.1-17) ... Removing shared-mime-info (1.3-1) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing libglib2.0-data (2.42.1-1) ... Removing libpq5:amd64 (9.4.18-0+deb8u1) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Removing libgraph-perl (1:0.96-1.1) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libgs9-common (9.06~dfsg-2+deb8u7) ... Removing libguard-perl (1.022-2+b1) ... Removing libheap-perl (0.80-2) ... Removing libhpdf-2.2.1 (2.2.1-1.1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.11-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libice6:amd64 (2:1.0.9-1+b1) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Removing libijs-0.35:amd64 (0.35-10) ... Removing libimport-into-perl (1.002004-1) ... Removing libindirect-perl (0.33-1) ... Removing libipc-run-perl (0.92-1+deb8u1) ... Removing libio-pty-perl (1:1.08-1+b4) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libmailtools-perl (2.13-1) ... Removing libnet-smtp-ssl-perl (1.01-3) ... Removing libio-string-perl (1.08-3) ... Removing libole-storage-lite-perl (0.19-1) ... Removing libio-stringy-perl (2.110-5) ... Removing libipc-sharelite-perl (0.17-3+b2) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libjbig2dec0 (0.13-4~deb8u2) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjs-jquery (1.7.2+dfsg-3.2) ... Removing libjs-scriptaculous (1.9.0-2) ... Removing libjs-prototype (1.7.1-3) ... Removing libjson-perl (2.61-1) ... Removing liblcms2-2:amd64 (2.6-3+deb8u1) ... Removing liblexical-sealrequirehints-perl (0.007-1+b2) ... Removing libstatistics-descriptive-perl (3.0607-1) ... Removing liblist-moreutils-perl (0.33-2+b1) ... Removing libterm-ui-perl (0.42-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Removing libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Removing libmath-spline-perl (0.02-1) ... Removing libmath-derivative-perl (0.01-6) ... Removing libmldbm-perl (2.05-1) ... Removing libmodule-pluggable-perl (5.1-1) ... Removing libmodule-runtime-perl (0.014-1) ... Removing libmodule-signature-perl (0.73-1+deb8u2) ... Removing libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Removing libossp-uuid-perl (1.6.2-1.5+b1) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Removing libpackage-constants-perl (0.04-1) ... Removing libpadwalker-perl (1.98-1+b1) ... Removing libpaper-utils (1.1.24+nmu4) ... Removing libpaper1:amd64 (1.1.24+nmu4) ... Removing libparams-classify-perl (0.013-4+b2) ... Removing libparams-util-perl (1.07-2+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967009+dfsg-1) ... Removing libpathplan4 (2.38.0-7) ... Removing libperl5.20 (5.20.2-3+deb8u11) ... Removing libpixman-1-0:amd64 (0.32.6-3) ... Removing libpod-latex-perl (0.61-1) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-readme-perl (0.11-1) ... Removing libpostscript-perl (0.06-2) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Removing libregexp-common-perl (2013031301-1) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libset-scalar-perl (1.29-1) ... Removing libsort-naturally-perl (1.03-1) ... Removing sqlite3 (3.8.7.1-1+deb8u2) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Removing ssl-cert (1.0.35) ... Removing libstrictures-perl (1.005005-1) ... Removing libstring-approx-perl (3.27-1+b2) ... Removing libsub-exporter-progressive-perl (0.001011-1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.12-1) ... Removing libsvg-perl (2.59-1) ... Removing libtask-weaken-perl (1.04-1) ... Removing libterm-readkey-perl (2.32-1+b1) ... Removing libtext-soundex-perl (3.4-1+b2) ... Removing libtext-template-perl (1.46-1) ... Removing libthai-data (0.1.21-1) ... Removing libtie-ixhash-perl (1.23-1) ... Removing libtype-tiny-xs-perl (0.010-1) ... Removing libunicode-map-perl (0.112-11+b1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxdot4 (2.38.0-7) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing libxml-dom-xpath-perl (0.14-1) ... Removing libxml-dom-perl (1.44-1) ... Removing libxml-sax-writer-perl (0.54-1) ... Removing libxml-filter-buffertext-perl (1.01-5) ... Removing libxml-simple-perl (2.20-1) ... Removing libxml-libxslt-perl (1.92-1+b1) ... Removing libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-perl (0.08-2) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml-twig-perl (1:3.48-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Removing libyaml-libyaml-perl (0.41-6) ... Removing libyaml-perl (1.13-1) ... Removing mafft (7.205-1) ... Removing maq (0.7.1-5) ... Removing mime-support (3.58) ... Removing muscle (1:3.8.31-1) ... Removing mustang (3.2.2-1) ... Removing mysql-common (5.5.60-0+deb8u1) ... Removing ncbi-data (6.1.20120620-8) ... Removing perl-doc (5.20.2-3+deb8u11) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing phyml (2:20120412-2) ... Removing poa (2.0+20060928-3) ... Removing poppler-data (0.4.7-1) ... Removing prank (0.0.140110-1) ... Removing primer3 (2.3.6-1) ... Removing probalign (1.4-3) ... Removing probcons (1.12-9) ... Removing proda (1.0-8) ... Removing samtools (0.1.19-1) ... Removing sim4 (0.0.20121010-1) ... Removing t-coffee (11.00.8cbe486-1) ... Removing tigr-glimmer (3.02-3) ... Removing wise-data (2.4.1-17) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.15-2) ... Removing libxml-parser-perl (2.41-3) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-liberation (1.07.4-1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libx11-data (2:1.6.2-3+deb8u1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing libwww-perl (6.08-1) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing libnet-http-perl (6.07-1) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.3) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Removing libavahi-client3:amd64 (0.6.31-5) ... Removing libavahi-common3:amd64 (0.6.31-5) ... Removing libavahi-common-data:amd64 (0.6.31-5) ... Removing libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing openssl (1.0.1t-1+deb8u8) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing perl (5.20.2-3+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 1m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', 'remove', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blast2', 'bowtie', 'bwa', 'ca-certificates', 'clustalo', 'clustalw', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid', 'fonts-liberation', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'ifupdown', 'infernal', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libargtable2-0', 'libarray-compare-perl', 'libasync-interrupt-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libbareword-filehandles-perl', 'libbio-asn1-entrezgene-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcap-ng0:amd64', 'libcarp-clan-perl', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-meta-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libdata-optlist-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdns-export100', 'libencode-locale-perl', 'liberror-perl', 'libev-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libguard-perl', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libindirect-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libjasper1:amd64', 'libjbig0:amd64', 'libjbig2dec0', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-moreutils-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic1:amd64', 'libmailtools-perl', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmro-compat-perl', 'libmultidimensional-perl', 'libmysqlclient18:amd64', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libole-storage-lite-perl', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libperl5.20', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libpostscript-perl', 'libpq5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libregexp-common-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-scalar-perl', 'libsm6:amd64', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstaden-read1', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libtasn1-6:amd64', 'libterm-readkey-perl', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libunicode-map-perl', 'liburi-perl', 'libvm-ec2-perl', 'libvpx1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxtables10', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-cur', 'mafft', 'maq', 'mime-support', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-doc', 'perl-modules', 'perl-tk', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rename', 'ruby', 'ruby2.1', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'wise', 'wise-data', 'x11-common', 'xdg-user-dirs', 'xml-core', 'gbrowse'] 1m51.8s INFO: Running scripts post_remove 1m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_remove_exceptions'] 1m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_remove_exceptions'] 1m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg', '--purge', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blast2', 'bowtie', 'bwa', 'ca-certificates', 'clustalo', 'clustalw', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid', 'fonts-liberation', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'ifupdown', 'infernal', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libargtable2-0', 'libarray-compare-perl', 'libasync-interrupt-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libbareword-filehandles-perl', 'libbio-asn1-entrezgene-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcap-ng0:amd64', 'libcarp-clan-perl', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-meta-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libdata-optlist-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdns-export100', 'libencode-locale-perl', 'liberror-perl', 'libev-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libguard-perl', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libindirect-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libjasper1:amd64', 'libjbig0:amd64', 'libjbig2dec0', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-moreutils-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic1:amd64', 'libmailtools-perl', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmro-compat-perl', 'libmultidimensional-perl', 'libmysqlclient18:amd64', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libole-storage-lite-perl', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libperl5.20', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libpostscript-perl', 'libpq5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libregexp-common-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-scalar-perl', 'libsm6:amd64', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstaden-read1', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libtasn1-6:amd64', 'libterm-readkey-perl', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libunicode-map-perl', 'liburi-perl', 'libvm-ec2-perl', 'libvpx1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxtables10', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-cur', 'mafft', 'maq', 'mime-support', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-doc', 'perl-modules', 'perl-tk', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rename', 'ruby', 'ruby2.1', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'wise', 'wise-data', 'x11-common', 'xdg-user-dirs', 'xml-core'] 1m54.0s DUMP: dpkg: warning: ignoring request to remove amap-align which isn't installed (Reading database ... 7878 files and directories currently installed.) Removing apache2 (2.4.10-10+deb8u12) ... Purging configuration files for apache2 (2.4.10-10+deb8u12) ... dpkg: warning: while removing apache2, directory '/var/www/html' not empty so not removed Removing apache2-bin (2.4.10-10+deb8u12) ... Purging configuration files for apache2-bin (2.4.10-10+deb8u12) ... dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed Removing bedtools (2.21.0-1) ... Purging configuration files for bedtools (2.21.0-1) ... dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed Removing blast2 (1:2.2.26.20120620-8) ... Purging configuration files for blast2 (1:2.2.26.20120620-8) ... dpkg: warning: ignoring request to remove bowtie which isn't installed Removing bwa (0.7.10-1) ... Purging configuration files for bwa (0.7.10-1) ... Removing ca-certificates (20141019+deb8u3) ... Purging configuration files for ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove clustalo which isn't installed Removing clustalw (2.1+lgpl-4) ... Purging configuration files for clustalw (2.1+lgpl-4) ... Removing dbus (1.8.22-0+deb8u1) ... Purging configuration files for dbus (1.8.22-0+deb8u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed Removing emboss-lib (6.6.0+dfsg-1) ... Purging configuration files for emboss-lib (6.6.0+dfsg-1) ... dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Removing fontconfig (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... Removing fonts-droid (1:4.4.4r2-6) ... Purging configuration files for fonts-droid (1:4.4.4r2-6) ... dpkg: warning: ignoring request to remove fonts-liberation which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed Removing graphviz (2.38.0-7) ... Purging configuration files for graphviz (2.38.0-7) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... dpkg: warning: ignoring request to remove hmmer which isn't installed Removing ifupdown (0.7.53.1) ... Purging configuration files for ifupdown (0.7.53.1) ... dpkg: warning: ignoring request to remove infernal which isn't installed Removing iproute2 (3.16.0-2) ... Purging configuration files for iproute2 (3.16.0-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Purging configuration files for isc-dhcp-client (4.3.1-6+deb8u3) ... dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed Removing javascript-common (11) ... Purging configuration files for javascript-common (11) ... Removing kalign (1:2.03+20110620-2) ... Purging configuration files for kalign (1:2.03+20110620-2) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-cachedns-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-http-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-perl which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Removing libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Purging configuration files for libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed Removing libapr1:amd64 (1.5.1-3) ... Purging configuration files for libapr1:amd64 (1.5.1-3) ... Removing libaprutil1:amd64 (1.5.4-1) ... Purging configuration files for libaprutil1:amd64 (1.5.4-1) ... dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libarchive-extract-perl which isn't installed Removing libargtable2-0 (12-1.1) ... Purging configuration files for libargtable2-0 (12-1.1) ... dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libasync-interrupt-perl which isn't installed Removing libatm1:amd64 (1:2.5.1-1.5) ... Purging configuration files for libatm1:amd64 (1:2.5.1-1.5) ... dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed Removing libavahi-client3:amd64 (0.6.31-5) ... Purging configuration files for libavahi-client3:amd64 (0.6.31-5) ... dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed Removing libavahi-common3:amd64 (0.6.31-5) ... Purging configuration files for libavahi-common3:amd64 (0.6.31-5) ... dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove libbareword-filehandles-perl which isn't installed dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libbio-scf-perl which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed Removing libbsd0:amd64 (0.7.0-2) ... Purging configuration files for libbsd0:amd64 (0.7.0-2) ... dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Purging configuration files for libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcap-ng0:amd64 (0.7.4-2) ... Purging configuration files for libcap-ng0:amd64 (0.7.4-2) ... dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed Removing libcdt5 (2.38.0-7) ... Purging configuration files for libcdt5 (2.38.0-7) ... dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-session-perl which isn't installed Removing libcgraph6 (2.38.0-7) ... Purging configuration files for libcgraph6 (2.38.0-7) ... dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libcommon-sense-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libcpan-meta-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-ssleay-perl which isn't installed Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Purging configuration files for libcups2:amd64 (1.7.5-11+deb8u2) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Purging configuration files for libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Removing libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Purging configuration files for libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Removing libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Purging configuration files for libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libdata-section-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-xs-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed Removing libdatrie1:amd64 (0.2.8-1) ... Purging configuration files for libdatrie1:amd64 (0.2.8-1) ... dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed Removing libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Purging configuration files for libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-globaldestruction-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-lexalias-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libev-perl which isn't installed Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u4) ... dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd-svg-perl which isn't installed Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Purging configuration files for libgd3:amd64 (2.1.0-5+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Purging configuration files for libgdbm3:amd64 (1.8.3-13.1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Purging configuration files for libglib2.0-0:amd64 (2.42.1-1+b1) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Purging configuration files for libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgomp1:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove libgraph-perl which isn't installed Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Purging configuration files for libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed Removing libgs9 (9.06~dfsg-2+deb8u7) ... Purging configuration files for libgs9 (9.06~dfsg-2+deb8u7) ... dpkg: warning: ignoring request to remove libgs9-common which isn't installed Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... dpkg: warning: ignoring request to remove libguard-perl which isn't installed Removing libgvc6 (2.38.0-7) ... Purging configuration files for libgvc6 (2.38.0-7) ... Removing libgvpr2 (2.38.0-7) ... Purging configuration files for libgvpr2 (2.38.0-7) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Purging configuration files for libharfbuzz0b:amd64 (0.9.35-2) ... dpkg: warning: ignoring request to remove libheap-perl which isn't installed Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libhpdf-2.2.1 (2.2.1-1.1) ... Purging configuration files for libhpdf-2.2.1 (2.2.1-1.1) ... dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed Removing libice6:amd64 (2:1.0.9-1+b1) ... Purging configuration files for libice6:amd64 (2:1.0.9-1+b1) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Purging configuration files for libidn11:amd64 (1.29-1+deb8u2) ... Removing libijs-0.35:amd64 (0.35-10) ... Purging configuration files for libijs-0.35:amd64 (0.35-10) ... dpkg: warning: ignoring request to remove libimport-into-perl which isn't installed dpkg: warning: ignoring request to remove libindirect-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libipc-sharelite-perl which isn't installed Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Purging configuration files for libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... Removing libjbig2dec0 (0.13-4~deb8u2) ... Purging configuration files for libjbig2dec0 (0.13-4~deb8u2) ... dpkg: warning: ignoring request to remove libjcode-pm-perl which isn't installed Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Purging configuration files for libjpeg62-turbo:amd64 (1:1.3.1-12) ... dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-prototype which isn't installed dpkg: warning: ignoring request to remove libjs-scriptaculous which isn't installed dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libjson-xs-perl which isn't installed Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Purging configuration files for libkeyutils1:amd64 (1.5.9-5+b1) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing liblcms2-2:amd64 (2.6-3+deb8u1) ... Purging configuration files for liblcms2-2:amd64 (2.6-3+deb8u1) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Purging configuration files for libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... dpkg: warning: ignoring request to remove liblexical-sealrequirehints-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Purging configuration files for libltdl7:amd64 (2.4.2-1.11+b1) ... Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Purging configuration files for liblua5.1-0:amd64 (5.1.5-7.1) ... dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed Removing libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Purging configuration files for libmagic1:amd64 (1:5.22+15-2+deb8u4) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmath-derivative-perl which isn't installed dpkg: warning: ignoring request to remove libmath-spline-perl which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed Removing libmodule-build-perl (0.421000-2+deb8u1) ... Purging configuration files for libmodule-build-perl (0.421000-2+deb8u1) ... dpkg: warning: ignoring request to remove libmodule-pluggable-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-signature-perl which isn't installed dpkg: warning: ignoring request to remove libmoo-perl which isn't installed dpkg: warning: ignoring request to remove libmro-compat-perl which isn't installed dpkg: warning: ignoring request to remove libmultidimensional-perl which isn't installed Removing libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Purging configuration files for libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Purging configuration files for libncbi6:amd64 (6.1.20120620-8) ... dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed Removing libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Purging configuration files for libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Purging configuration files for libp11-kit0:amd64 (0.20.7-1) ... dpkg: warning: ignoring request to remove libpackage-constants-perl which isn't installed dpkg: warning: ignoring request to remove libpadwalker-perl which isn't installed Removing libpango-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpango-1.0-0:amd64 (1.36.8-3) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangoft2-1.0-0:amd64 (1.36.8-3) ... dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Removing libpaper1:amd64 (1.1.24+nmu4) ... Purging configuration files for libpaper1:amd64 (1.1.24+nmu4) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparams-util-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed Removing libpathplan4 (2.38.0-7) ... Purging configuration files for libpathplan4 (2.38.0-7) ... dpkg: warning: ignoring request to remove libperl5.20 which isn't installed Removing libpixman-1-0:amd64 (0.32.6-3) ... Purging configuration files for libpixman-1-0:amd64 (0.32.6-3) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libpod-latex-perl (0.61-1) ... Purging configuration files for libpod-latex-perl (0.61-1) ... dpkg: warning: ignoring request to remove libpod-readme-perl which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed Removing libpq5:amd64 (9.4.18-0+deb8u1) ... Purging configuration files for libpq5:amd64 (9.4.18-0+deb8u1) ... dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Purging configuration files for libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed Removing librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Purging configuration files for librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Purging configuration files for libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Purging configuration files for libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Purging configuration files for libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed Removing libsm6:amd64 (2:1.2.2-1+b1) ... Purging configuration files for libsm6:amd64 (2:1.2.2-1+b1) ... dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsoftware-license-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Purging configuration files for libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libstaden-read1 (1.13.7-1) ... Purging configuration files for libstaden-read1 (1.13.7-1) ... dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libstring-approx-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Purging configuration files for libtasn1-6:amd64 (4.2-3+deb8u3) ... dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove libterm-ui-perl which isn't installed dpkg: warning: ignoring request to remove libtext-soundex-perl which isn't installed dpkg: warning: ignoring request to remove libtext-template-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed Removing libthai0:amd64 (0.1.21-1) ... Purging configuration files for libthai0:amd64 (0.1.21-1) ... dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Purging configuration files for libtiff5:amd64 (4.0.3-12.3+deb8u5) ... dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libvm-ec2-perl which isn't installed Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Purging configuration files for libvpx1:amd64 (1.3.0-3+deb8u1) ... dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u1) ... dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Purging configuration files for libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-render0:amd64 (1.10-3+b1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing libxdot4 (2.38.0-7) ... Purging configuration files for libxdot4 (2.38.0-7) ... Removing libxext6:amd64 (2:1.3.3-1) ... Purging configuration files for libxext6:amd64 (2:1.3.3-1) ... Removing libxft2:amd64 (2.3.2-1) ... Purging configuration files for libxft2:amd64 (2.3.2-1) ... dpkg: warning: ignoring request to remove libxml-dom-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-filter-buffertext-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Removing libxml-sax-perl (0.99+dfsg-2) ... Purging configuration files for libxml-sax-perl (0.99+dfsg-2) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Purging configuration files for libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed Removing libxmu6:amd64 (2:1.1.2-1) ... Purging configuration files for libxmu6:amd64 (2:1.1.2-1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Purging configuration files for libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Purging configuration files for libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Purging configuration files for libxt6:amd64 (1:1.1.4-1+b1) ... Removing libxtables10 (1.4.21-2+b1) ... Purging configuration files for libxtables10 (1.4.21-2+b1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Purging configuration files for libyaml-0-2:amd64 (0.1.6-3) ... dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed dpkg: warning: ignoring request to remove lynx which isn't installed Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Purging configuration files for lynx-cur (2.8.9dev1-2+deb8u1) ... dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove maq which isn't installed Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Removing mysql-common (5.5.60-0+deb8u1) ... Purging configuration files for mysql-common (5.5.60-0+deb8u1) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Removing ncbi-data (6.1.20120620-8) ... Purging configuration files for ncbi-data (6.1.20120620-8) ... Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... Removing openssl (1.0.1t-1+deb8u8) ... Purging configuration files for openssl (1.0.1t-1+deb8u8) ... dpkg: warning: while removing openssl, directory '/etc/ssl/certs' not empty so not removed dpkg: warning: while removing openssl, directory '/etc/ssl/private' not empty so not removed dpkg: warning: ignoring request to remove perl which isn't installed Removing perl-doc (5.20.2-3+deb8u11) ... Purging configuration files for perl-doc (5.20.2-3+deb8u11) ... Removing perl-modules (5.20.2-3+deb8u11) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Removing poppler-data (0.4.7-1) ... Purging configuration files for poppler-data (0.4.7-1) ... dpkg: warning: ignoring request to remove prank which isn't installed Removing primer3 (2.3.6-1) ... Purging configuration files for primer3 (2.3.6-1) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed Removing python (2.7.9-1) ... Purging configuration files for python (2.7.9-1) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed Removing python2.7 (2.7.9-2+deb8u1) ... Purging configuration files for python2.7 (2.7.9-2+deb8u1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Purging configuration files for python2.7-minimal (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby2.1 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed Removing samtools (0.1.19-1) ... Purging configuration files for samtools (0.1.19-1) ... Removing sgml-base (1.26+nmu4) ... Purging configuration files for sgml-base (1.26+nmu4) ... Removing shared-mime-info (1.3-1) ... Purging configuration files for shared-mime-info (1.3-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove sqlite3 which isn't installed Removing ssl-cert (1.0.35) ... Purging configuration files for ssl-cert (1.0.35) ... dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... Removing xdg-user-dirs (0.15-2) ... Purging configuration files for xdg-user-dirs (0.15-2) ... Removing xml-core (0.13+nmu2) ... Purging configuration files for xml-core (0.13+nmu2) ... 1m54.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg', '--purge', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blast2', 'bowtie', 'bwa', 'ca-certificates', 'clustalo', 'clustalw', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid', 'fonts-liberation', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'ifupdown', 'infernal', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libargtable2-0', 'libarray-compare-perl', 'libasync-interrupt-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libbareword-filehandles-perl', 'libbio-asn1-entrezgene-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcap-ng0:amd64', 'libcarp-clan-perl', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-meta-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libdata-optlist-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdns-export100', 'libencode-locale-perl', 'liberror-perl', 'libev-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libguard-perl', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libindirect-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libjasper1:amd64', 'libjbig0:amd64', 'libjbig2dec0', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-moreutils-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic1:amd64', 'libmailtools-perl', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmro-compat-perl', 'libmultidimensional-perl', 'libmysqlclient18:amd64', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libole-storage-lite-perl', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libperl5.20', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libpostscript-perl', 'libpq5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libregexp-common-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-scalar-perl', 'libsm6:amd64', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstaden-read1', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libtasn1-6:amd64', 'libterm-readkey-perl', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libunicode-map-perl', 'liburi-perl', 'libvm-ec2-perl', 'libvpx1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxtables10', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-cur', 'mafft', 'maq', 'mime-support', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-doc', 'perl-modules', 'perl-tk', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rename', 'ruby', 'ruby2.1', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'wise', 'wise-data', 'x11-common', 'xdg-user-dirs', 'xml-core'] 1m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg', '--purge', 'gbrowse'] 1m54.1s DUMP: (Reading database ... 7556 files and directories currently installed.) Removing gbrowse (2.54+dfsg-3) ... Purging configuration files for gbrowse (2.54+dfsg-3) ... 1m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg', '--purge', 'gbrowse'] 1m54.1s INFO: Running scripts post_purge 1m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_purge_exceptions'] 1m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_purge_exceptions'] 1m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg', '--purge', '--pending'] 1m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg', '--purge', '--pending'] 1m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg', '--remove', '--pending'] 1m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg', '--remove', '--pending'] 1m54.2s INFO: Running scripts post_test 1m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_test_exceptions'] 1m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'tmp/scripts/post_test_exceptions'] 1m54.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 1m54.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 1m55.4s DEBUG: No broken symlinks as far as we can find. 1m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg-divert', '--list'] 1m55.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'dpkg-divert', '--list'] 1m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', 'clean'] 1m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2oq38esw', 'apt-get', 'clean'] 1m55.4s DEBUG: Recording chroot state 1m55.9s INFO: PASS: Installation and purging test. 1m56.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/shm'] 1m56.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/shm'] 1m56.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/console'] 1m56.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/console'] 1m56.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/ptmx'] 1m56.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/ptmx'] 1m56.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/pts'] 1m56.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/dev/pts'] 1m56.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/proc'] 1m56.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2oq38esw/proc'] 1m56.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 1m56.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2oq38esw'] 1m56.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2oq38esw 1m56.4s INFO: PASS: All tests. 1m56.4s INFO: piuparts run ends. ret=0 End: 2022-10-30 08:44:44 GMT