Start: 2022-10-27 13:46:12 GMT Package: pynast Version: 1.2.2-1 Installed-Size: 324 Maintainer: Debian Med Packaging Team Architecture: all Replaces: python-pynast Provides: python-pynast Depends: python (>= 2.7), python (<< 2.8), libjs-jquery, libjs-underscore Recommends: blast2, clustalw, mafft, muscle, python-mpi4py Suggests: uclust Conflicts: python-pynast Description: alignment of short DNA sequences Homepage: http://pynast.sourceforge.net/ Description-md5: f1947c7dd3400e1226d490b83db3a814 Section: python Priority: extra Filename: pool/main/p/pynast/pynast_1.2.2-1_all.deb Size: 81106 MD5sum: 2772563b7ed81219f7b367146b848476 SHA1: f4ec9fafdf129ac87b8f0c7037e2d5c06f2f022a SHA256: e037c05f94a30990518d42beede5f276645051ae4861d0d49a85ef61203f13ba Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt pynast=1.2.2-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt pynast=1.2.2-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpspaxc0si 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpspaxc0si 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpspaxc0si/tmp/scripts/ 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpspaxc0si/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', 'update'] 0m3.9s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', 'update'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s INFO: Running scripts post_setup 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m6.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (3789 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_minimize'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_minimize'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_zz_backports'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_setup_zz_backports'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', 'clean'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', 'clean'] 0m6.0s DEBUG: Recording chroot state 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.4s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg-divert', '--list'] 0m6.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg-divert', '--list'] 0m6.5s INFO: Running scripts is_testable 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/is_testable_uninstallable'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/is_testable_uninstallable'] 0m6.5s INFO: apt-cache does not know about any of the requested packages 0m6.5s INFO: Running scripts pre_test 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_test_exceptions'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_test_exceptions'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_test_root_password'] 0m6.5s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_test_root_password'] 0m6.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m6.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m7.5s DEBUG: No broken symlinks as far as we can find. 0m7.5s INFO: Running scripts pre_install 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_database-server'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_database-server'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m7.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m8.5s DEBUG: No broken symlinks as far as we can find. 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-cache', 'policy'] 0m9.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-cache', 'policy'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-cache', 'policy', 'pynast'] 0m9.8s DUMP: pynast: Installed: (none) Candidate: 1.2.2-1 Version table: 1.2.2-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-cache', 'policy', 'pynast'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', '-y', 'install', 'pynast=1.2.2-1'] 0m37.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: blast2 ca-certificates clustalw file ifupdown iproute2 isc-dhcp-client isc-dhcp-common javascript-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libauthen-sasl-perl libbsd0 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libgmp10 libgnutls-deb0-28 libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libjs-jquery libjs-underscore liblog-message-perl liblog-message-simple-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnuma1 libopenmpi1.6 libp11-kit0 libpackage-constants-perl libparams-util-perl libpciaccess0 libpod-latex-perl libpod-readme-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libruby2.1 libsoftware-license-perl libsqlite3-0 libssl1.0.0 libsub-exporter-perl libsub-install-perl libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 libxtables10 libyaml-0-2 lynx lynx-cur mafft mime-support mpi-default-bin muscle ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-modules python python-minimal python-mpi4py python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration sgml-base xml-core Suggested packages: libvibrant6b ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 clustalx seaview ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd apache2 lighttpd httpd libdigest-hmac-perl libgssapi-perl blcr-dkms gnutls-bin libdata-dump-perl libhwloc-contrib-plugins libcrypt-ssleay-perl libmime-base64-perl pciutils libauthen-ntlm-perl opencl-icd gfortran openmpi-checkpoint perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl uclust python-doc python-tk python-numpy python2.7-doc binutils binfmt-support ri ruby-dev bundler sgml-base-doc debhelper Recommended packages: libarchive-tar-perl The following NEW packages will be installed: blast2 ca-certificates clustalw file ifupdown iproute2 isc-dhcp-client isc-dhcp-common javascript-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libauthen-sasl-perl libbsd0 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libgmp10 libgnutls-deb0-28 libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libjs-jquery libjs-underscore liblog-message-perl liblog-message-simple-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnuma1 libopenmpi1.6 libp11-kit0 libpackage-constants-perl libparams-util-perl libpciaccess0 libpod-latex-perl libpod-readme-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libruby2.1 libsoftware-license-perl libsqlite3-0 libssl1.0.0 libsub-exporter-perl libsub-install-perl libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 libxtables10 libyaml-0-2 lynx lynx-cur mafft mime-support mpi-default-bin muscle ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-modules pynast python python-minimal python-mpi4py python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration sgml-base xml-core 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 36.7 MB of archives. After this operation, 158 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:3 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:4 http://deb.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:5 http://deb.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:6 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:7 http://deb.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:8 http://deb.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:9 http://deb.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:10 http://deb.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:11 http://deb.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u4 [250 kB] Get:12 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:13 http://deb.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:14 http://deb.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:15 http://deb.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:16 http://deb.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:17 http://deb.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:18 http://deb.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:19 http://deb.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:20 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:21 http://deb.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:22 http://deb.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:23 http://deb.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:24 http://deb.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:25 http://deb.debian.org/debian/ jessie/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:26 http://deb.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:27 http://deb.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:28 http://deb.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:29 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:30 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:31 http://deb.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:32 http://deb.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:33 http://deb.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:34 http://deb.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:35 http://deb.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:36 http://deb.debian.org/debian/ jessie/main libnuma1 amd64 2.0.10-1 [32.5 kB] Get:37 http://deb.debian.org/debian/ jessie/main libpciaccess0 amd64 0.13.2-3+b1 [47.6 kB] Get:38 http://deb.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:39 http://deb.debian.org/debian/ jessie/main sgml-base all 1.26+nmu4 [14.6 kB] Get:40 http://deb.debian.org/debian/ jessie/main libhwloc5 amd64 1.10.0-3 [86.9 kB] Get:41 http://deb.debian.org/debian/ jessie/main ocl-icd-libopencl1 amd64 2.2.3-1+deb8u1 [33.6 kB] Get:42 http://deb.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:43 http://deb.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:44 http://deb.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:45 http://deb.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:46 http://deb.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:47 http://deb.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:48 http://deb.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u4 [60.5 kB] Get:49 http://deb.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:50 http://deb.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:51 http://deb.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:52 http://deb.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:53 http://deb.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:54 http://deb.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:55 http://deb.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:56 http://deb.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:57 http://deb.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:58 http://deb.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:59 http://deb.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:60 http://deb.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:61 http://deb.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:62 http://deb.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:63 http://deb.debian.org/debian/ jessie/main libcr0 amd64 0.8.5-2.2 [32.7 kB] Get:64 http://deb.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:65 http://deb.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:66 http://deb.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:67 http://deb.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:68 http://deb.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:69 http://deb.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:70 http://deb.debian.org/debian/ jessie/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:71 http://deb.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:72 http://deb.debian.org/debian/ jessie/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:73 http://deb.debian.org/debian/ jessie/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:74 http://deb.debian.org/debian/ jessie/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:75 http://deb.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:76 http://deb.debian.org/debian/ jessie/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:77 http://deb.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:78 http://deb.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:79 http://deb.debian.org/debian/ jessie/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:80 http://deb.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:81 http://deb.debian.org/debian/ jessie/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:82 http://deb.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:83 http://deb.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:84 http://deb.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:85 http://deb.debian.org/debian/ jessie/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:86 http://deb.debian.org/debian/ jessie/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:87 http://deb.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:88 http://deb.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:89 http://deb.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:90 http://deb.debian.org/debian/ jessie/main libjs-underscore all 1.7.0~dfsg-1 [49.9 kB] Get:91 http://deb.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:92 http://deb.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:93 http://deb.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:94 http://deb.debian.org/debian/ jessie/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:95 http://deb.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:96 http://deb.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:97 http://deb.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:98 http://deb.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:99 http://deb.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:100 http://deb.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:101 http://deb.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:102 http://deb.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:103 http://deb.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:104 http://deb.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:105 http://deb.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:106 http://deb.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:107 http://deb.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:108 http://deb.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:109 http://deb.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:110 http://deb.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:111 http://deb.debian.org/debian/ jessie/main muscle amd64 1:3.8.31-1 [169 kB] Get:112 http://deb.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:113 http://deb.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:114 http://deb.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:115 http://deb.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:116 http://deb.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:117 http://deb.debian.org/debian/ jessie/main xml-core all 0.13+nmu2 [24.2 kB] Get:118 http://deb.debian.org/debian/ jessie/main libhwloc-plugins amd64 1.10.0-3 [15.2 kB] Get:119 http://deb.debian.org/debian/ jessie/main libibverbs1 amd64 1.1.8-1.1 [32.2 kB] Get:120 http://deb.debian.org/debian/ jessie/main libopenmpi1.6 amd64 1.6.5-9.1+deb8u1 [1455 kB] Get:121 http://deb.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:122 http://deb.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] Get:123 http://deb.debian.org/debian/ jessie/main openmpi-common all 1.6.5-9.1+deb8u1 [110 kB] Get:124 http://deb.debian.org/debian/ jessie/main openmpi-bin amd64 1.6.5-9.1+deb8u1 [154 kB] Get:125 http://deb.debian.org/debian/ jessie/main mpi-default-bin amd64 1.0.2+nmu2 [3356 B] Get:126 http://deb.debian.org/debian/ jessie/main pynast all 1.2.2-1 [81.1 kB] Get:127 http://deb.debian.org/debian/ jessie/main python-mpi4py amd64 1.3.1+hg20131106-2 [318 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.7 MB in 8s (4110 kB/s) Selecting previously unselected package libgdbm3:amd64. 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Preparing to unpack .../archives/rename_0.20-3_all.deb ... Unpacking rename (0.20-3) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../rubygems-integration_1.8_all.deb ... Unpacking rubygems-integration (1.8) ... Selecting previously unselected package libruby2.1:amd64. Preparing to unpack .../libruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking libruby2.1:amd64 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby2.1. Preparing to unpack .../ruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking ruby2.1 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby. Preparing to unpack .../ruby_1%3a2.1.5+deb8u2_all.deb ... Unpacking ruby (1:2.1.5+deb8u2) ... Selecting previously unselected package xml-core. Preparing to unpack .../xml-core_0.13+nmu2_all.deb ... Unpacking xml-core (0.13+nmu2) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../libhwloc-plugins_1.10.0-3_amd64.deb ... Unpacking libhwloc-plugins (1.10.0-3) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../libibverbs1_1.1.8-1.1_amd64.deb ... Unpacking libibverbs1 (1.1.8-1.1) ... Selecting previously unselected package libopenmpi1.6. Preparing to unpack .../libopenmpi1.6_1.6.5-9.1+deb8u1_amd64.deb ... Unpacking libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Selecting previously unselected package lynx-cur. Preparing to unpack .../lynx-cur_2.8.9dev1-2+deb8u1_amd64.deb ... Unpacking lynx-cur (2.8.9dev1-2+deb8u1) ... Selecting previously unselected package lynx. Preparing to unpack .../lynx_2.8.9dev1-2+deb8u1_all.deb ... Unpacking lynx (2.8.9dev1-2+deb8u1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../openmpi-common_1.6.5-9.1+deb8u1_all.deb ... Unpacking openmpi-common (1.6.5-9.1+deb8u1) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../openmpi-bin_1.6.5-9.1+deb8u1_amd64.deb ... Unpacking openmpi-bin (1.6.5-9.1+deb8u1) ... Selecting previously unselected package mpi-default-bin. Preparing to unpack .../mpi-default-bin_1.0.2+nmu2_amd64.deb ... Unpacking mpi-default-bin (1.0.2+nmu2) ... Selecting previously unselected package pynast. Preparing to unpack .../pynast_1.2.2-1_all.deb ... Unpacking pynast (1.2.2-1) ... Selecting previously unselected package python-mpi4py. Preparing to unpack .../python-mpi4py_1.3.1+hg20131106-2_amd64.deb ... Unpacking python-mpi4py (1.3.1+hg20131106-2) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up perl (5.20.2-3+deb8u11) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up mime-support (3.58) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up libnuma1:amd64 (2.0.10-1) ... Setting up libpciaccess0:amd64 (0.13.2-3+b1) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up sgml-base (1.26+nmu4) ... Setting up libhwloc5:amd64 (1.10.0-3) ... Setting up ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Setting up iproute2 (3.16.0-2) ... Setting up ifupdown (0.7.53.1) ... Creating /etc/network/interfaces. Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up netbase (5.3) ... Setting up file (1:5.22+15-2+deb8u4) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done. Setting up clustalw (2.1+lgpl-4) ... Setting up javascript-common (11) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libarchive-extract-perl (0.72-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libcr0 (0.8.5-2.2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up liburi-perl (1.64-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up libjs-underscore (1.7.0~dfsg-1) ... Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up mafft (7.205-1) ... Setting up muscle (1:3.8.31-1) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up xml-core (0.13+nmu2) ... Setting up libhwloc-plugins (1.10.0-3) ... Setting up libibverbs1 (1.1.8-1.1) ... Setting up libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up openmpi-common (1.6.5-9.1+deb8u1) ... Setting up openmpi-bin (1.6.5-9.1+deb8u1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-bin (1.0.2+nmu2) ... Setting up pynast (1.2.2-1) ... Setting up python-mpi4py (1.3.1+hg20131106-2) ... Setting up libwww-perl (6.08-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for sgml-base (1.26+nmu4) ... 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', '-y', 'install', 'pynast=1.2.2-1'] 0m37.7s INFO: Running scripts post_install 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_install_exceptions'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_install_exceptions'] 0m37.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m38.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m39.3s ERROR: WARN: Broken symlinks: /usr/share/rubygems-integration/2.0.0 -> 2.0 (rubygems-integration) /usr/include/mpi4py -> ../share/pyshared/mpi4py/include/mpi4py (python-mpi4py) 0m39.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', '-ac', '--ignore-obsolete'] 0m41.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', '-ac', '--ignore-obsolete'] 0m41.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.3s DUMP: 0.15.6 0m41.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.3s INFO: Running adequate version 0.15.6 now. 0m41.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'pynast'] 0m41.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'pynast'] 0m41.4s INFO: Running scripts pre_remove 0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_exceptions'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/pre_remove_exceptions'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.6s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed blast2 blast2 1:2.2.26.20120620-8 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed clustalw clustalw 2.1+lgpl-4 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed file file 1:5.22+15-2+deb8u4 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed ifupdown ifupdown 0.7.53.1 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed iproute2 iproute2 3.16.0-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.1-6+deb8u3 install ok installed isc-dhcp-common isc-dhcp-common 4.3.1-6+deb8u3 install ok installed javascript-common javascript-common 11 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.09-1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libarchive-extract-perl libarchive-extract-perl 0.72-1 install ok installed libatm1:amd64 libatm1 1:2.5.1-1.5 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd0:amd64 libbsd0 0.7.0-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.04-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.09-1 install ok installed libclass-c3-perl libclass-c3-perl 0.26-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.13-2+b1 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcpan-meta-perl libcpan-meta-perl 2.142690-1 install ok installed libcr0 libcr0 0.8.5-2.2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdata-optlist-perl libdata-optlist-perl 0.109-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libfcgi-perl libfcgi-perl 0.77-1+deb8u1 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u1 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.11-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libhwloc-plugins libhwloc-plugins 1.10.0-3 install ok installed libhwloc5:amd64 libhwloc5 1.10.0-3 install ok installed libibverbs1 libibverbs1 1.1.8-1.1 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u2 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libjs-jquery libjs-jquery 1.7.2+dfsg-3.2 install ok installed libjs-underscore libjs-underscore 1.7.0~dfsg-1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.11+b1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmagic1:amd64 libmagic1 1:5.22+15-2+deb8u4 install ok installed libmailtools-perl libmailtools-perl 2.13-1 install ok installed libmodule-build-perl libmodule-build-perl 0.421000-2+deb8u1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.1-1 install ok installed libmodule-signature-perl libmodule-signature-perl 0.73-1+deb8u2 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libncbi6:amd64 libncbi6 6.1.20120620-8 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.01-3 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnuma1:amd64 libnuma1 2.0.10-1 install ok installed libopenmpi1.6 libopenmpi1.6 1.6.5-9.1+deb8u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpackage-constants-perl libpackage-constants-perl 0.04-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libparams-util-perl libparams-util-perl 1.07-2+b1 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.2-3+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpod-latex-perl libpod-latex-perl 0.61-1 install ok installed libpod-readme-perl libpod-readme-perl 0.11-1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libregexp-common-perl libregexp-common-perl 2013031301-1 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103010-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libterm-ui-perl libterm-ui-perl 0.42-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b2 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u6 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.6-3 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed lynx lynx 2.8.9dev1-2+deb8u1 install ok installed lynx-cur lynx-cur 2.8.9dev1-2+deb8u1 install ok installed mafft mafft 7.205-1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed mpi-default-bin mpi-default-bin 1.0.2+nmu2 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed muscle muscle 1:3.8.31-1 install ok installed ncbi-data ncbi-data 6.1.20120620-8 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.3-1+deb8u1 install ok installed openmpi-bin openmpi-bin 1.6.5-9.1+deb8u1 install ok installed openmpi-common openmpi-common 1.6.5-9.1+deb8u1 install ok installed openssl openssl 1.0.1t-1+deb8u8 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl perl 5.20.2-3+deb8u11 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed pynast pynast 1.2.2-1 install ok installed python python 2.7.9-1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python-mpi4py python-mpi4py 1.3.1+hg20131106-2 install ok installed python2.7 python2.7 2.7.9-2+deb8u1 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed rename rename 0.20-3 install ok installed ruby ruby 1:2.1.5+deb8u2 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed rubygems-integration rubygems-integration 1.8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed sgml-base sgml-base 1.26+nmu4 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed xml-core xml-core 0.13+nmu2 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', 'remove', 'blast2', 'ca-certificates', 'clustalw', 'file', 'ifupdown', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'libalgorithm-c3-perl', 'libarchive-extract-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libcpan-meta-perl', 'libcr0', 'libdata-optlist-perl', 'libdata-section-perl', 'libdns-export100', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libhogweed2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libjs-jquery', 'libjs-underscore', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic1:amd64', 'libmailtools-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-signature-perl', 'libmro-compat-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnuma1:amd64', 'libopenmpi1.6', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libparams-util-perl', 'libpciaccess0:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libregexp-common-perl', 'libruby2.1:amd64', 'libsoftware-license-perl', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libsub-exporter-perl', 'libsub-install-perl', 'libtasn1-6:amd64', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libtimedate-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml2:amd64', 'libxtables10', 'libyaml-0-2:amd64', 'lynx', 'lynx-cur', 'mafft', 'mime-support', 'mpi-default-bin', 'muscle', 'ncbi-data', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssl', 'perl', 'perl-modules', 'python', 'python-minimal', 'python-mpi4py', 'python2.7', 'python2.7-minimal', 'rename', 'ruby', 'ruby2.1', 'rubygems-integration', 'sgml-base', 'xml-core', 'pynast'] 0m47.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blast2 ca-certificates clustalw file ifupdown iproute2 isc-dhcp-client isc-dhcp-common javascript-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libauthen-sasl-perl libbsd0 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libgmp10 libgnutls-deb0-28 libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libjs-jquery libjs-underscore liblog-message-perl liblog-message-simple-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnuma1 libopenmpi1.6 libp11-kit0 libpackage-constants-perl libparams-util-perl libpciaccess0 libpod-latex-perl libpod-readme-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libruby2.1 libsoftware-license-perl libsqlite3-0 libssl1.0.0 libsub-exporter-perl libsub-install-perl libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 libxtables10 libyaml-0-2 lynx lynx-cur mafft mime-support mpi-default-bin muscle ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-modules pynast python python-minimal python-mpi4py python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration sgml-base xml-core 0 upgraded, 0 newly installed, 127 to remove and 0 not upgraded. After this operation, 158 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13358 files and directories currently installed.) Removing blast2 (1:2.2.26.20120620-8) ... Removing ruby (1:2.1.5+deb8u2) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing rubygems-integration (1.8) ... Removing clustalw (2.1+lgpl-4) ... Removing file (1:5.22+15-2+deb8u4) ... Removing ifupdown (0.7.53.1) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Removing iproute2 (3.16.0-2) ... Removing isc-dhcp-common (4.3.1-6+deb8u3) ... Removing javascript-common (11) ... Removing libsoftware-license-perl (0.103010-3) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.26-1) ... Removing libalgorithm-c3-perl (0.09-1) ... Removing libarchive-extract-perl (0.72-1) ... Removing libatm1:amd64 (1:2.5.1-1.5) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing lynx (2.8.9dev1-2+deb8u1) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Removing libbsd0:amd64 (0.7.0-2) ... Removing libcgi-fast-perl (1:2.04-1) ... Removing libcgi-pm-perl (4.09-1) ... Removing libclass-c3-xs-perl (0.13-2+b1) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.142690-1) ... Removing python-mpi4py (1.3.1+hg20131106-2) ... Removing mpi-default-bin (1.0.2+nmu2) ... Removing openmpi-bin (1.6.5-9.1+deb8u1) ... Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Removing libcr0 (0.8.5-2.2) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.109-1) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing pynast (1.2.2-1) ... Removing python (2.7.9-1) ... Removing python2.7 (2.7.9-2+deb8u1) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Removing libfcgi-perl (0.77-1+deb8u1) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libhtml-format-perl (2.11-1) ... Removing libfont-afm-perl (1.20-1) ... Removing xml-core (0.13+nmu2) ... Removing sgml-base (1.26+nmu4) ... Removing rename (0.20-3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libhtml-form-perl (6.03-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libhwloc-plugins (1.10.0-3) ... Removing libhwloc5:amd64 (1.10.0-3) ... Removing libibverbs1 (1.1.8-1.1) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Removing libmailtools-perl (2.13-1) ... Removing libnet-smtp-ssl-perl (1.01-3) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libjs-jquery (1.7.2+dfsg-3.2) ... Removing libjs-underscore (1.7.0~dfsg-1) ... Removing libterm-ui-perl (0.42-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Removing libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Removing libmodule-pluggable-perl (5.1-1) ... Removing libmodule-signature-perl (0.73-1+deb8u2) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libnuma1:amd64 (2.0.10-1) ... Removing libpackage-constants-perl (0.04-1) ... Removing libparams-util-perl (1.07-2+b1) ... Removing libpciaccess0:amd64 (0.13.2-3+b1) ... Removing libpod-latex-perl (0.61-1) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-readme-perl (0.11-1) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Removing libregexp-common-perl (2013031301-1) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libsub-install-perl (0.928-1) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libtext-soundex-perl (3.4-1+b2) ... Removing libtext-template-perl (1.46-1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Removing mafft (7.205-1) ... Removing mime-support (3.58) ... Removing muscle (1:3.8.31-1) ... Removing ncbi-data (6.1.20120620-8) ... Removing ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Removing openmpi-common (1.6.5-9.1+deb8u1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libwww-perl (6.08-1) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libnet-http-perl (6.07-1) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing openssl (1.0.1t-1+deb8u8) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.3) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing perl (5.20.2-3+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', 'remove', 'blast2', 'ca-certificates', 'clustalw', 'file', 'ifupdown', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'libalgorithm-c3-perl', 'libarchive-extract-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libcpan-meta-perl', 'libcr0', 'libdata-optlist-perl', 'libdata-section-perl', 'libdns-export100', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libhogweed2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libjs-jquery', 'libjs-underscore', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic1:amd64', 'libmailtools-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-signature-perl', 'libmro-compat-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnuma1:amd64', 'libopenmpi1.6', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libparams-util-perl', 'libpciaccess0:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libregexp-common-perl', 'libruby2.1:amd64', 'libsoftware-license-perl', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libsub-exporter-perl', 'libsub-install-perl', 'libtasn1-6:amd64', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libtimedate-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml2:amd64', 'libxtables10', 'libyaml-0-2:amd64', 'lynx', 'lynx-cur', 'mafft', 'mime-support', 'mpi-default-bin', 'muscle', 'ncbi-data', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssl', 'perl', 'perl-modules', 'python', 'python-minimal', 'python-mpi4py', 'python2.7', 'python2.7-minimal', 'rename', 'ruby', 'ruby2.1', 'rubygems-integration', 'sgml-base', 'xml-core', 'pynast'] 0m47.1s INFO: Running scripts post_remove 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_remove_exceptions'] 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_remove_exceptions'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg', '--purge', 'blast2', 'ca-certificates', 'clustalw', 'file', 'ifupdown', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'libalgorithm-c3-perl', 'libarchive-extract-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libcpan-meta-perl', 'libcr0', 'libdata-optlist-perl', 'libdata-section-perl', 'libdns-export100', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libhogweed2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libjs-jquery', 'libjs-underscore', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic1:amd64', 'libmailtools-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-signature-perl', 'libmro-compat-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnuma1:amd64', 'libopenmpi1.6', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libparams-util-perl', 'libpciaccess0:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libregexp-common-perl', 'libruby2.1:amd64', 'libsoftware-license-perl', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libsub-exporter-perl', 'libsub-install-perl', 'libtasn1-6:amd64', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libtimedate-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml2:amd64', 'libxtables10', 'libyaml-0-2:amd64', 'lynx', 'lynx-cur', 'mafft', 'mime-support', 'mpi-default-bin', 'muscle', 'ncbi-data', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssl', 'perl', 'perl-modules', 'python', 'python-minimal', 'python-mpi4py', 'python2.7', 'python2.7-minimal', 'rename', 'ruby', 'ruby2.1', 'rubygems-integration', 'sgml-base', 'xml-core'] 0m47.5s DUMP: (Reading database ... 7536 files and directories currently installed.) Removing blast2 (1:2.2.26.20120620-8) ... Purging configuration files for blast2 (1:2.2.26.20120620-8) ... Removing ca-certificates (20141019+deb8u3) ... Purging configuration files for ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing clustalw (2.1+lgpl-4) ... Purging configuration files for clustalw (2.1+lgpl-4) ... dpkg: warning: ignoring request to remove file which isn't installed Removing ifupdown (0.7.53.1) ... Purging configuration files for ifupdown (0.7.53.1) ... Removing iproute2 (3.16.0-2) ... Purging configuration files for iproute2 (3.16.0-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Purging configuration files for isc-dhcp-client (4.3.1-6+deb8u3) ... dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed Removing javascript-common (11) ... Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed dpkg: warning: ignoring request to remove libarchive-extract-perl which isn't installed Removing libatm1:amd64 (1:2.5.1-1.5) ... Purging configuration files for libatm1:amd64 (1:2.5.1-1.5) ... dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed Removing libbsd0:amd64 (0.7.0-2) ... Purging configuration files for libbsd0:amd64 (0.7.0-2) ... dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed dpkg: warning: ignoring request to remove libcpan-meta-perl which isn't installed Removing libcr0 (0.8.5-2.2) ... Purging configuration files for libcr0 (0.8.5-2.2) ... dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libdata-section-perl which isn't installed Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u4) ... dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed Removing libgdbm3:amd64 (1.8.3-13.1) ... Purging configuration files for libgdbm3:amd64 (1.8.3-13.1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Purging configuration files for libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed Removing libhwloc5:amd64 (1.10.0-3) ... Purging configuration files for libhwloc5:amd64 (1.10.0-3) ... Removing libibverbs1 (1.1.8-1.1) ... Purging configuration files for libibverbs1 (1.1.8-1.1) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Purging configuration files for libidn11:amd64 (1.29-1+deb8u2) ... dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove liblog-message-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Purging configuration files for libltdl7:amd64 (2.4.2-1.11+b1) ... dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed Removing libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Purging configuration files for libmagic1:amd64 (1:5.22+15-2+deb8u4) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed Removing libmodule-build-perl (0.421000-2+deb8u1) ... Purging configuration files for libmodule-build-perl (0.421000-2+deb8u1) ... dpkg: warning: ignoring request to remove libmodule-pluggable-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-signature-perl which isn't installed dpkg: warning: ignoring request to remove libmro-compat-perl which isn't installed Removing libncbi6:amd64 (6.1.20120620-8) ... Purging configuration files for libncbi6:amd64 (6.1.20120620-8) ... dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libnuma1:amd64 (2.0.10-1) ... Purging configuration files for libnuma1:amd64 (2.0.10-1) ... Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Purging configuration files for libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Purging configuration files for libp11-kit0:amd64 (0.20.7-1) ... dpkg: warning: ignoring request to remove libpackage-constants-perl which isn't installed dpkg: warning: ignoring request to remove libparams-util-perl which isn't installed Removing libpciaccess0:amd64 (0.13.2-3+b1) ... Purging configuration files for libpciaccess0:amd64 (0.13.2-3+b1) ... Removing libpod-latex-perl (0.61-1) ... Purging configuration files for libpod-latex-perl (0.61-1) ... dpkg: warning: ignoring request to remove libpod-readme-perl which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Purging configuration files for libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Purging configuration files for libruby2.1:amd64 (2.1.5-2+deb8u3) ... dpkg: warning: ignoring request to remove libsoftware-license-perl which isn't installed Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Purging configuration files for libtasn1-6:amd64 (4.2-3+deb8u3) ... dpkg: warning: ignoring request to remove libterm-ui-perl which isn't installed dpkg: warning: ignoring request to remove libtext-soundex-perl which isn't installed dpkg: warning: ignoring request to remove libtext-template-perl which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Purging configuration files for libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxtables10 (1.4.21-2+b1) ... Purging configuration files for libxtables10 (1.4.21-2+b1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Purging configuration files for libyaml-0-2:amd64 (0.1.6-3) ... dpkg: warning: ignoring request to remove lynx which isn't installed Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Purging configuration files for lynx-cur (2.8.9dev1-2+deb8u1) ... dpkg: warning: ignoring request to remove mafft which isn't installed Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed Removing ncbi-data (6.1.20120620-8) ... Purging configuration files for ncbi-data (6.1.20120620-8) ... Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... Removing ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Purging configuration files for ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Removing openmpi-bin (1.6.5-9.1+deb8u1) ... Purging configuration files for openmpi-bin (1.6.5-9.1+deb8u1) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Removing openssl (1.0.1t-1+deb8u8) ... Purging configuration files for openssl (1.0.1t-1+deb8u8) ... dpkg: warning: ignoring request to remove perl which isn't installed Removing perl-modules (5.20.2-3+deb8u11) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... Removing python (2.7.9-1) ... Purging configuration files for python (2.7.9-1) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-mpi4py which isn't installed Removing python2.7 (2.7.9-2+deb8u1) ... Purging configuration files for python2.7 (2.7.9-2+deb8u1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Purging configuration files for python2.7-minimal (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby2.1 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed Removing sgml-base (1.26+nmu4) ... Purging configuration files for sgml-base (1.26+nmu4) ... Removing xml-core (0.13+nmu2) ... Purging configuration files for xml-core (0.13+nmu2) ... 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg', '--purge', 'blast2', 'ca-certificates', 'clustalw', 'file', 'ifupdown', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'libalgorithm-c3-perl', 'libarchive-extract-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libcpan-meta-perl', 'libcr0', 'libdata-optlist-perl', 'libdata-section-perl', 'libdns-export100', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libhogweed2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libjs-jquery', 'libjs-underscore', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic1:amd64', 'libmailtools-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-signature-perl', 'libmro-compat-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnuma1:amd64', 'libopenmpi1.6', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libparams-util-perl', 'libpciaccess0:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libregexp-common-perl', 'libruby2.1:amd64', 'libsoftware-license-perl', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libsub-exporter-perl', 'libsub-install-perl', 'libtasn1-6:amd64', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libtimedate-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml2:amd64', 'libxtables10', 'libyaml-0-2:amd64', 'lynx', 'lynx-cur', 'mafft', 'mime-support', 'mpi-default-bin', 'muscle', 'ncbi-data', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssl', 'perl', 'perl-modules', 'python', 'python-minimal', 'python-mpi4py', 'python2.7', 'python2.7-minimal', 'rename', 'ruby', 'ruby2.1', 'rubygems-integration', 'sgml-base', 'xml-core'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg', '--purge', 'pynast'] 0m47.5s DUMP: dpkg: warning: ignoring request to remove pynast which isn't installed 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg', '--purge', 'pynast'] 0m47.5s INFO: Running scripts post_purge 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_purge_exceptions'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_purge_exceptions'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg', '--purge', '--pending'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg', '--purge', '--pending'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg', '--remove', '--pending'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg', '--remove', '--pending'] 0m47.6s INFO: Running scripts post_test 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_test_exceptions'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'tmp/scripts/post_test_exceptions'] 0m47.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m47.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m48.5s DEBUG: No broken symlinks as far as we can find. 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg-divert', '--list'] 0m48.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'dpkg-divert', '--list'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', 'clean'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpspaxc0si', 'apt-get', 'clean'] 0m48.5s DEBUG: Recording chroot state 0m48.9s INFO: PASS: Installation and purging test. 0m49.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/shm'] 0m49.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/shm'] 0m49.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/console'] 0m49.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/console'] 0m49.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/ptmx'] 0m49.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/ptmx'] 0m49.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/pts'] 0m49.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/dev/pts'] 0m49.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/proc'] 0m49.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpspaxc0si/proc'] 0m49.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m49.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpspaxc0si'] 0m49.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpspaxc0si 0m49.4s INFO: PASS: All tests. 0m49.4s INFO: piuparts run ends. ret=0 End: 2022-10-27 13:47:02 GMT