Start: 2022-10-14 19:23:43 GMT Package: r-bioc-gviz Version: 1.8.4-1 Installed-Size: 4956 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.1.1-1), r-cran-lattice, r-cran-rcolorbrewer, r-cran-latticeextra, r-cran-matrixstats, r-bioc-biobase, r-bioc-biocgenerics, r-bioc-iranges, r-bioc-annotationdbi, r-bioc-biostrings, r-bioc-genomicalignments, r-bioc-genomicfeatures (>= 1.16.2), r-bioc-genomicranges, r-bioc-biovizbase Description: Plotting data and annotation information along genomic coordinates Homepage: http://bioconductor.org/packages/release/bioc/html/Gviz.html Description-md5: a1192a0bcb8465ef96fce24dbb9e40c0 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gviz/r-bioc-gviz_1.8.4-1_all.deb Size: 3110588 MD5sum: 5565ec2cfb7fe342355d92aed4f54300 SHA1: a64e3a162de154402cf4ffdd146d9b7d39297119 SHA256: 0dfc0dd374e37090b172b7a6ef4b840e97b8c9ca8ac4a3e466c490d9b4b22f52 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt r-bioc-gviz=1.8.4-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt r-bioc-gviz=1.8.4-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpwlfvo4kh 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpwlfvo4kh 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpwlfvo4kh/tmp/scripts/ 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpwlfvo4kh/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', 'update'] 0m4.6s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', 'update'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.1s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.1s INFO: Running scripts post_setup 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m7.1s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (1752 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', 'clean'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', 'clean'] 0m7.2s DEBUG: Recording chroot state 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg-divert', '--list'] 0m7.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg-divert', '--list'] 0m7.7s INFO: Running scripts is_testable 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/is_testable_uninstallable'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/is_testable_uninstallable'] 0m7.7s INFO: apt-cache does not know about any of the requested packages 0m7.7s INFO: Running scripts pre_test 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_test_exceptions'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_test_exceptions'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_test_root_password'] 0m7.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_test_root_password'] 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 0m8.8s DEBUG: No broken symlinks as far as we can find. 0m8.8s INFO: Running scripts pre_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 0m9.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 0m9.7s DEBUG: No broken symlinks as far as we can find. 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-cache', 'policy'] 0m10.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-cache', 'policy'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-cache', 'policy', 'r-bioc-gviz'] 0m10.8s DUMP: r-bioc-gviz: Installed: (none) Candidate: 1.8.4-1 Version table: 1.8.4-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-cache', 'policy', 'r-bioc-gviz'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', '-y', 'install', 'r-bioc-gviz=1.8.4-1'] 1m13.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-4.9 dbus dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-4.9 gcc gcc-4.9 gfortran gfortran-4.9 ifupdown iproute2 isc-dhcp-client isc-dhcp-common krb5-locales libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive-extract-perl libasan1 libatm1 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcap-ng0 libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libcurl3 libdata-optlist-perl libdata-section-perl libdatrie1 libdbus-1-3 libdns-export100 libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libfcgi-perl libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran-4.9-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libllvm3.5 liblog-message-perl liblog-message-simple-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libp11-kit0 libpackage-constants-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-util-perl libpciaccess0 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev libpod-latex-perl libpod-readme-perl libquadmath0 libreadline-dev libreadline6-dev libregexp-common-perl librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsm6 libsoftware-license-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libtasn1-6 libtcl8.5 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.5 libtsan0 libtxc-dxtn-s2tc0 libubsan0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev littler make manpages manpages-dev netbase openssl patch perl perl-modules r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-boot r-cran-brew r-cran-checkmate r-cran-chron r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-domc r-cran-doparallel r-cran-fail r-cran-foreach r-cran-foreign r-cran-formula r-cran-hmisc r-cran-hwriter r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-spatial r-cran-stringr r-cran-survival r-cran-xml r-doc-html r-recommended rename sgml-base shared-mime-info unzip x11-common x11-utils x11-xserver-utils xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev Suggested packages: binutils-doc devscripts cpp-doc gcc-4.9-locales dbus-x11 debian-keyring g++-multilib g++-4.9-multilib gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-4.9-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-4.9-multilib gfortran-4.9-doc libgfortran3-dbg ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd libdigest-hmac-perl libgssapi-perl glibc-doc gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl liblzma-doc ncurses-doc libmime-base64-perl pciutils readline-doc libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libstdc++-4.9-doc tcl8.5 tk8.5 libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools r-cran-getopt make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl ess r-doc-info r-doc-pdf r-mathlib r-base-html debhelper texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-snpstats r-cran-rmysql r-cran-ggplot2 r-cran-inline r-cran-runit mozilla www-browser sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin Recommended packages: libarchive-tar-perl The following NEW packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-4.9 dbus dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-4.9 gcc gcc-4.9 gfortran gfortran-4.9 ifupdown iproute2 isc-dhcp-client isc-dhcp-common krb5-locales libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive-extract-perl libasan1 libatm1 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcap-ng0 libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libcurl3 libdata-optlist-perl libdata-section-perl libdatrie1 libdbus-1-3 libdns-export100 libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libfcgi-perl libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran-4.9-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libllvm3.5 liblog-message-perl liblog-message-simple-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libp11-kit0 libpackage-constants-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-util-perl libpciaccess0 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev libpod-latex-perl libpod-readme-perl libquadmath0 libreadline-dev libreadline6-dev libregexp-common-perl librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsm6 libsoftware-license-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libtasn1-6 libtcl8.5 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.5 libtsan0 libtxc-dxtn-s2tc0 libubsan0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev littler make manpages manpages-dev netbase openssl patch perl perl-modules r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-boot r-cran-brew r-cran-checkmate r-cran-chron r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-domc r-cran-doparallel r-cran-fail r-cran-foreach r-cran-foreign r-cran-formula r-cran-hmisc r-cran-hwriter r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-spatial r-cran-stringr r-cran-survival r-cran-xml r-doc-html r-recommended rename sgml-base shared-mime-info unzip x11-common x11-utils x11-xserver-utils xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 332 newly installed, 0 to remove and 0 not upgraded. Need to get 188 MB of archives. After this operation, 491 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:3 http://deb.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:4 http://deb.debian.org/debian/ jessie/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:5 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:6 http://deb.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:7 http://deb.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:8 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:9 http://deb.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:10 http://deb.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:11 http://deb.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:12 http://deb.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:13 http://deb.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:14 http://deb.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:15 http://deb.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:16 http://deb.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:17 http://deb.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:18 http://deb.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:19 http://deb.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:20 http://deb.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:21 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:22 http://deb.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:23 http://deb.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:24 http://deb.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:25 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:26 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:27 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:28 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:29 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:30 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:31 http://deb.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:32 http://deb.debian.org/debian/ jessie/main libasan1 amd64 4.9.2-10+deb8u1 [195 kB] Get:33 http://deb.debian.org/debian/ jessie/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:34 http://deb.debian.org/debian/ jessie/main libatomic1 amd64 4.9.2-10+deb8u1 [9014 B] Get:35 http://deb.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:36 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:37 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:38 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:39 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:40 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:41 http://deb.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:42 http://deb.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:43 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:44 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:45 http://deb.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:46 http://deb.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:47 http://deb.debian.org/debian/ jessie/main libcilkrts5 amd64 4.9.2-10+deb8u1 [40.1 kB] Get:48 http://deb.debian.org/debian/ jessie/main libisl10 amd64 0.12.2-2 [440 kB] Get:49 http://deb.debian.org/debian/ jessie/main libcloog-isl4 amd64 0.18.2-1+b2 [61.8 kB] Get:50 http://deb.debian.org/debian/ jessie/main librtmp1 amd64 2.4+20150115.gita107cef-1+deb8u1 [60.0 kB] Get:51 http://deb.debian.org/debian/ jessie/main libssh2-1 amd64 1.4.3-4.1+deb8u1 [125 kB] Get:52 http://deb.debian.org/debian/ jessie/main libcurl3 amd64 7.38.0-4+deb8u11 [260 kB] Get:53 http://deb.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:54 http://deb.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:55 http://deb.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:56 http://deb.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:57 http://deb.debian.org/debian/ jessie/main libdrm2 amd64 2.4.58-2 [29.9 kB] Get:58 http://deb.debian.org/debian/ jessie/main libpciaccess0 amd64 0.13.2-3+b1 [47.6 kB] Get:59 http://deb.debian.org/debian/ jessie/main libdrm-intel1 amd64 2.4.58-2 [64.9 kB] Get:60 http://deb.debian.org/debian/ jessie/main libdrm-nouveau2 amd64 2.4.58-2 [21.6 kB] Get:61 http://deb.debian.org/debian/ jessie/main libdrm-radeon1 amd64 2.4.58-2 [31.1 kB] Get:62 http://deb.debian.org/debian/ jessie/main libelf1 amd64 0.159-4.2 [160 kB] Get:63 http://deb.debian.org/debian/ jessie/main libfontenc1 amd64 1:1.1.2-1+b2 [23.9 kB] Get:64 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:65 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:66 http://deb.debian.org/debian/ jessie/main libllvm3.5 amd64 1:3.5-10 [7607 kB] Get:67 http://deb.debian.org/debian/ jessie/main libgl1-mesa-dri amd64 10.3.2-1+deb8u1 [3384 kB] Get:68 http://deb.debian.org/debian/ jessie/main libglapi-mesa amd64 10.3.2-1+deb8u1 [53.3 kB] Get:69 http://deb.debian.org/debian/ jessie/main libx11-xcb1 amd64 2:1.6.2-3+deb8u1 [163 kB] Get:70 http://deb.debian.org/debian/ jessie/main libxcb-dri2-0 amd64 1.10-3+b1 [12.9 kB] Get:71 http://deb.debian.org/debian/ jessie/main libxcb-dri3-0 amd64 1.10-3+b1 [11.1 kB] Get:72 http://deb.debian.org/debian/ jessie/main libxcb-glx0 amd64 1.10-3+b1 [27.4 kB] Get:73 http://deb.debian.org/debian/ jessie/main libxcb-present0 amd64 1.10-3+b1 [11.1 kB] Get:74 http://deb.debian.org/debian/ jessie/main libxcb-sync1 amd64 1.10-3+b1 [14.4 kB] Get:75 http://deb.debian.org/debian/ jessie/main libxfixes3 amd64 1:5.0.1-2+deb8u1 [21.1 kB] Get:76 http://deb.debian.org/debian/ jessie/main libxdamage1 amd64 1:1.1.4-2+b1 [14.7 kB] Get:77 http://deb.debian.org/debian/ jessie/main libxshmfence1 amd64 1.1-4 [6736 B] Get:78 http://deb.debian.org/debian/ jessie/main libxxf86vm1 amd64 1:1.1.3-1+b1 [19.6 kB] Get:79 http://deb.debian.org/debian/ jessie/main libgl1-mesa-glx amd64 10.3.2-1+deb8u1 [180 kB] Get:80 http://deb.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:81 http://deb.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:82 http://deb.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:83 http://deb.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:84 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:85 http://deb.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:86 http://deb.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:87 http://deb.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:88 http://deb.debian.org/debian/ jessie/main libitm1 amd64 4.9.2-10+deb8u1 [29.3 kB] Get:89 http://deb.debian.org/debian/ jessie/main liblsan0 amd64 4.9.2-10+deb8u1 [92.7 kB] Get:90 http://deb.debian.org/debian/ jessie/main libmpfr4 amd64 3.1.2-2 [527 kB] Get:91 http://deb.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:92 http://deb.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:93 http://deb.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:94 http://deb.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:95 http://deb.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:96 http://deb.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:97 http://deb.debian.org/debian/ jessie/main libpcrecpp0 amd64 2:8.35-3.3+deb8u4 [142 kB] Get:98 http://deb.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:99 http://deb.debian.org/debian/ jessie/main libtcl8.5 amd64 8.5.17-1 [737 kB] Get:100 http://deb.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:101 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:102 http://deb.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:103 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:104 http://deb.debian.org/debian/ jessie/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:105 http://deb.debian.org/debian/ jessie/main libtk8.5 amd64 8.5.17-1 [749 kB] Get:106 http://deb.debian.org/debian/ jessie/main libtsan0 amd64 4.9.2-10+deb8u1 [212 kB] Get:107 http://deb.debian.org/debian/ jessie/main libubsan0 amd64 4.9.2-10+deb8u1 [82.4 kB] Get:108 http://deb.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:109 http://deb.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:110 http://deb.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:111 http://deb.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:112 http://deb.debian.org/debian/ jessie/main libxcb-shape0 amd64 1.10-3+b1 [11.6 kB] Get:113 http://deb.debian.org/debian/ jessie/main libxcomposite1 amd64 1:0.4.4-1 [17.4 kB] Get:114 http://deb.debian.org/debian/ jessie/main libxcursor1 amd64 1:1.1.14-1+deb8u1 [35.0 kB] Get:115 http://deb.debian.org/debian/ jessie/main libxi6 amd64 2:1.7.4-1+deb8u1 [79.9 kB] Get:116 http://deb.debian.org/debian/ jessie/main libxinerama1 amd64 2:1.1.3-1+b1 [16.9 kB] Get:117 http://deb.debian.org/debian/ jessie/main libxmuu1 amd64 2:1.1.2-1 [23.3 kB] Get:118 http://deb.debian.org/debian/ jessie/main libxrandr2 amd64 2:1.4.2-1+deb8u1 [35.5 kB] Get:119 http://deb.debian.org/debian/ jessie/main libxtst6 amd64 2:1.2.2-1+deb8u1 [27.2 kB] Get:120 http://deb.debian.org/debian/ jessie/main libxv1 amd64 2:1.0.10-1+deb8u1 [23.9 kB] Get:121 http://deb.debian.org/debian/ jessie/main libxxf86dga1 amd64 2:1.1.4-1+b1 [22.3 kB] Get:122 http://deb.debian.org/debian/ jessie/main sgml-base all 1.26+nmu4 [14.6 kB] Get:123 http://deb.debian.org/debian/ jessie/main libmpc3 amd64 1.0.2-1 [39.3 kB] Get:124 http://deb.debian.org/debian/ jessie/main libtxc-dxtn-s2tc0 amd64 0~git20131104-1.1 [51.6 kB] Get:125 http://deb.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:126 http://deb.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:127 http://deb.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:128 http://deb.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:129 http://deb.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:130 http://deb.debian.org/debian/ jessie/main manpages all 3.74-1 [997 kB] Get:131 http://deb.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:132 http://deb.debian.org/debian/ jessie/main bzip2 amd64 1.0.6-7+b3 [46.9 kB] Get:133 http://deb.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:134 http://deb.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:135 http://deb.debian.org/debian/ jessie/main patch amd64 2.7.5-1+deb8u1 [109 kB] Get:136 http://deb.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] Get:137 http://deb.debian.org/debian/ jessie/main autotools-dev all 20140911.1 [70.5 kB] Get:138 http://deb.debian.org/debian/ jessie/main binutils amd64 2.25-5+deb8u1 [3496 kB] Get:139 http://deb.debian.org/debian/ jessie/main libc-dev-bin amd64 2.19-18+deb8u10 [238 kB] Get:140 http://deb.debian.org/debian/ jessie/main linux-libc-dev amd64 3.16.56-1+deb8u1 [1096 kB] Get:141 http://deb.debian.org/debian/ jessie/main libc6-dev amd64 2.19-18+deb8u10 [2003 kB] Get:142 http://deb.debian.org/debian/ jessie/main cpp-4.9 amd64 4.9.2-10+deb8u1 [5002 kB] Get:143 http://deb.debian.org/debian/ jessie/main cpp amd64 4:4.9.2-2 [17.3 kB] Get:144 http://deb.debian.org/debian/ jessie/main libgcc-4.9-dev amd64 4.9.2-10+deb8u1 [2066 kB] Get:145 http://deb.debian.org/debian/ jessie/main gcc-4.9 amd64 4.9.2-10+deb8u1 [5184 kB] Get:146 http://deb.debian.org/debian/ jessie/main gcc amd64 4:4.9.2-2 [5136 B] Get:147 http://deb.debian.org/debian/ jessie/main libstdc++-4.9-dev amd64 4.9.2-10+deb8u1 [1120 kB] Get:148 http://deb.debian.org/debian/ jessie/main g++-4.9 amd64 4.9.2-10+deb8u1 [17.3 MB] Get:149 http://deb.debian.org/debian/ jessie/main g++ amd64 4:4.9.2-2 [1530 B] Get:150 http://deb.debian.org/debian/ jessie/main make amd64 4.0-8.1 [349 kB] Get:151 http://deb.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:152 http://deb.debian.org/debian/ jessie/main libdpkg-perl all 1.17.27 [1075 kB] Get:153 http://deb.debian.org/debian/ jessie/main dpkg-dev all 1.17.27 [1548 kB] Get:154 http://deb.debian.org/debian/ jessie/main build-essential amd64 11.7 [7114 B] Get:155 http://deb.debian.org/debian/ jessie/main bzip2-doc all 1.0.6-7 [307 kB] Get:156 http://deb.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:157 http://deb.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:158 http://deb.debian.org/debian/ jessie/main cdbs all 0.4.130+deb8u1 [77.1 kB] Get:159 http://deb.debian.org/debian/ jessie/main libfakeroot amd64 1.20.2-1 [44.7 kB] Get:160 http://deb.debian.org/debian/ jessie/main fakeroot amd64 1.20.2-1 [84.7 kB] Get:161 http://deb.debian.org/debian/ jessie/main libgfortran-4.9-dev amd64 4.9.2-10+deb8u1 [281 kB] Get:162 http://deb.debian.org/debian/ jessie/main gfortran-4.9 amd64 4.9.2-10+deb8u1 [5303 kB] Get:163 http://deb.debian.org/debian/ jessie/main gfortran amd64 4:4.9.2-2 [1292 B] Get:164 http://deb.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:165 http://deb.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:166 http://deb.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:167 http://deb.debian.org/debian/ jessie/main libalgorithm-merge-perl all 0.08-2 [13.5 kB] Get:168 http://deb.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:169 http://deb.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:170 http://deb.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:171 http://deb.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:172 http://deb.debian.org/debian/ jessie/main libblas-dev amd64 1.2.20110419-10 [163 kB] Get:173 http://deb.debian.org/debian/ jessie/main libbz2-dev amd64 1.0.6-7+b3 [29.0 kB] Get:174 http://deb.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:175 http://deb.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:176 http://deb.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:177 http://deb.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:178 http://deb.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:179 http://deb.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:180 http://deb.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:181 http://deb.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:182 http://deb.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:183 http://deb.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:184 http://deb.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:185 http://deb.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:186 http://deb.debian.org/debian/ jessie/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:187 http://deb.debian.org/debian/ jessie/main libfile-basedir-perl all 0.03-1 [10.4 kB] Get:188 http://deb.debian.org/debian/ jessie/main libfile-desktopentry-perl all 0.07-1 [18.5 kB] Get:189 http://deb.debian.org/debian/ jessie/main libfile-fcntllock-perl amd64 0.22-1+b1 [36.4 kB] Get:190 http://deb.debian.org/debian/ jessie/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:191 http://deb.debian.org/debian/ jessie/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:192 http://deb.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:193 http://deb.debian.org/debian/ jessie/main libfile-mimeinfo-perl all 0.26-1 [50.1 kB] Get:194 http://deb.debian.org/debian/ jessie/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:195 http://deb.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:196 http://deb.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:197 http://deb.debian.org/debian/ jessie/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:198 http://deb.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:199 http://deb.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:200 http://deb.debian.org/debian/ jessie/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:201 http://deb.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:202 http://deb.debian.org/debian/ jessie/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:203 http://deb.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:204 http://deb.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:205 http://deb.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:206 http://deb.debian.org/debian/ jessie/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:207 http://deb.debian.org/debian/ jessie/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:208 http://deb.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:209 http://deb.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:210 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo-dev amd64 1:1.3.1-12 [455 kB] Get:211 http://deb.debian.org/debian/ jessie/main libjpeg-dev all 1:1.3.1-12 [49.3 kB] Get:212 http://deb.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:213 http://deb.debian.org/debian/ jessie/main liblapack-dev amd64 3.5.0-4 [1884 kB] Get:214 http://deb.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:215 http://deb.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:216 http://deb.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:217 http://deb.debian.org/debian/ jessie/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:218 http://deb.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:219 http://deb.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:220 http://deb.debian.org/debian/ jessie/main liblzma-dev amd64 5.1.1alpha+20120614-2+b3 [256 kB] Get:221 http://deb.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:222 http://deb.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:223 http://deb.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:224 http://deb.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:225 http://deb.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:226 http://deb.debian.org/debian/ jessie/main libtinfo-dev amd64 5.9+20140913-1+deb8u3 [77.2 kB] Get:227 http://deb.debian.org/debian/ jessie/main libncurses5-dev amd64 5.9+20140913-1+deb8u3 [175 kB] Get:228 http://deb.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:229 http://deb.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:230 http://deb.debian.org/debian/ jessie/main libnet-dbus-perl amd64 1.0.0-2+b2 [193 kB] Get:231 http://deb.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:232 http://deb.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:233 http://deb.debian.org/debian/ jessie/main libpcre3-dev amd64 2:8.35-3.3+deb8u4 [441 kB] Get:234 http://deb.debian.org/debian/ jessie/main zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:235 http://deb.debian.org/debian/ jessie/main libpng12-dev amd64 1.2.50-2+deb8u3 [248 kB] Get:236 http://deb.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:237 http://deb.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:238 http://deb.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:239 http://deb.debian.org/debian/ jessie/main libreadline6-dev amd64 6.3-8+b3 [124 kB] Get:240 http://deb.debian.org/debian/ jessie/main libreadline-dev amd64 6.3-8+b3 [1002 B] Get:241 http://deb.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:242 http://deb.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:243 http://deb.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:244 http://deb.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:245 http://deb.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:246 http://deb.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:247 http://deb.debian.org/debian/ jessie/main libx11-protocol-perl all 0.56-6 [150 kB] Get:248 http://deb.debian.org/debian/ jessie/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:249 http://deb.debian.org/debian/ jessie/main zip amd64 3.0-8 [228 kB] Get:250 http://deb.debian.org/debian/ jessie/main unzip amd64 6.0-16+deb8u3 [162 kB] Get:251 http://deb.debian.org/debian/ jessie/main xdg-utils all 1.1.0~rc1+git20111210-7.4+deb8u1 [65.1 kB] Get:252 http://deb.debian.org/debian/ jessie/main r-base-core amd64 3.1.1-1+deb8u1 [19.9 MB] Get:253 http://deb.debian.org/debian/ jessie/main littler amd64 0.2.1-1 [36.2 kB] Get:254 http://deb.debian.org/debian/ jessie/main manpages-dev all 3.74-1 [1865 kB] Get:255 http://deb.debian.org/debian/ jessie/main r-base-dev all 3.1.1-1+deb8u1 [4024 B] Get:256 http://deb.debian.org/debian/ jessie/main r-cran-dbi amd64 0.3.1-1 [157 kB] Get:257 http://deb.debian.org/debian/ jessie/main r-cran-rsqlite amd64 0.11.4-3 [305 kB] Get:258 http://deb.debian.org/debian/ jessie/main r-bioc-biocgenerics all 0.10.0-1 [397 kB] Get:259 http://deb.debian.org/debian/ jessie/main r-bioc-biobase amd64 2.24.0-1 [2198 kB] Get:260 http://deb.debian.org/debian/ jessie/main r-bioc-iranges amd64 1.22.10-1 [1827 kB] Get:261 http://deb.debian.org/debian/ jessie/main r-bioc-genomeinfodb all 1.0.2-2 [221 kB] Get:262 http://deb.debian.org/debian/ jessie/main r-bioc-annotationdbi all 1.26.1-1 [4178 kB] Get:263 http://deb.debian.org/debian/ jessie/main r-cran-codetools all 0.2-9-1 [45.7 kB] Get:264 http://deb.debian.org/debian/ jessie/main r-cran-iterators all 1.0.7-1 [306 kB] Get:265 http://deb.debian.org/debian/ jessie/main r-cran-foreach all 1.4.2-1 [371 kB] Get:266 http://deb.debian.org/debian/ jessie/main r-cran-checkmate amd64 1.5.0-1 [255 kB] Get:267 http://deb.debian.org/debian/ jessie/main r-cran-bbmisc amd64 1.7-1 [264 kB] Get:268 http://deb.debian.org/debian/ jessie/main r-cran-brew amd64 1.0-6-1 [61.4 kB] Get:269 http://deb.debian.org/debian/ jessie/main r-cran-digest amd64 0.6.4-1 [81.5 kB] Get:270 http://deb.debian.org/debian/ jessie/main r-cran-pkgkitten all 0.1.2-1 [17.1 kB] Get:271 http://deb.debian.org/debian/ jessie/main r-cran-rcpp amd64 0.11.3-1 [2044 kB] Get:272 http://deb.debian.org/debian/ jessie/main r-cran-plyr amd64 1.8.1-2 [738 kB] Get:273 http://deb.debian.org/debian/ jessie/main r-cran-stringr all 0.6.2-2 [71.8 kB] Get:274 http://deb.debian.org/debian/ jessie/main r-cran-base64enc amd64 0.1-2-1 [19.9 kB] Get:275 http://deb.debian.org/debian/ jessie/main r-cran-sendmailr amd64 1.2-1-1 [29.0 kB] Get:276 http://deb.debian.org/debian/ jessie/main r-cran-fail amd64 1.2-1 [42.5 kB] Get:277 http://deb.debian.org/debian/ jessie/main r-cran-batchjobs amd64 1.4-1 [407 kB] Get:278 http://deb.debian.org/debian/ jessie/main r-bioc-biocparallel all 0.6.1-1 [321 kB] Get:279 http://deb.debian.org/debian/ jessie/main r-cran-xml amd64 3.98-1.1-1 [1809 kB] Get:280 http://deb.debian.org/debian/ jessie/main r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:281 http://deb.debian.org/debian/ jessie/main r-cran-rcurl amd64 1.95-4.3-1+deb8u1 [527 kB] Get:282 http://deb.debian.org/debian/ jessie/main r-bioc-biomart all 2.20.0-1 [365 kB] Get:283 http://deb.debian.org/debian/ jessie/main r-bioc-xvector amd64 0.4.0-1 [333 kB] Get:284 http://deb.debian.org/debian/ jessie/main r-bioc-biostrings amd64 2.32.1-1 [2251 kB] Get:285 http://deb.debian.org/debian/ jessie/main r-cran-dichromat all 2.0.0-3 [146 kB] Get:286 http://deb.debian.org/debian/ jessie/main r-cran-foreign amd64 0.8.61-1 [213 kB] Get:287 http://deb.debian.org/debian/ jessie/main r-cran-chron amd64 2.3-45-1 [102 kB] Get:288 http://deb.debian.org/debian/ jessie/main r-cran-lattice amd64 0.20-29-1 [713 kB] Get:289 http://deb.debian.org/debian/ jessie/main r-cran-cluster amd64 1.15.3-1 [475 kB] Get:290 http://deb.debian.org/debian/ jessie/main r-cran-survival amd64 2.37-7-1 [4443 kB] Get:291 http://deb.debian.org/debian/ jessie/main r-cran-formula all 1.1-2-1 [159 kB] Get:292 http://deb.debian.org/debian/ jessie/main r-cran-rpart amd64 4.1-8-1 [862 kB] Get:293 http://deb.debian.org/debian/ jessie/main r-cran-rcolorbrewer all 1.0-5-2 [25.5 kB] Get:294 http://deb.debian.org/debian/ jessie/main r-cran-latticeextra amd64 0.6-26-1 [2065 kB] Get:295 http://deb.debian.org/debian/ jessie/main r-cran-hmisc amd64 3.14-5-1 [1526 kB] Get:296 http://deb.debian.org/debian/ jessie/main r-cran-nnet amd64 7.3-8-1 [94.2 kB] Get:297 http://deb.debian.org/debian/ jessie/main r-cran-colorspace amd64 1.2-4-1 [348 kB] Get:298 http://deb.debian.org/debian/ jessie/main r-cran-munsell all 0.4.2-1 [116 kB] Get:299 http://deb.debian.org/debian/ jessie/main r-cran-labeling all 0.3-1 [39.9 kB] Get:300 http://deb.debian.org/debian/ jessie/main r-cran-scales all 0.2.4-1 [153 kB] Get:301 http://deb.debian.org/debian/ jessie/main r-bioc-genomicranges amd64 1.16.4-2 [1120 kB] Get:302 http://deb.debian.org/debian/ jessie/main r-bioc-rsamtools amd64 1.16.1-2 [3132 kB] Get:303 http://deb.debian.org/debian/ jessie/main r-bioc-bsgenome all 1.32.0-1 [763 kB] Get:304 http://deb.debian.org/debian/ jessie/main r-bioc-genomicalignments amd64 1.0.6-1 [1244 kB] Get:305 http://deb.debian.org/debian/ jessie/main r-bioc-rtracklayer amd64 1.24.2-1 [1776 kB] Get:306 http://deb.debian.org/debian/ jessie/main r-bioc-genomicfeatures all 1.16.3-1 [886 kB] Get:307 http://deb.debian.org/debian/ jessie/main r-bioc-variantannotation amd64 1.10.5-1 [1788 kB] Get:308 http://deb.debian.org/debian/ jessie/main r-bioc-biovizbase amd64 1.12.3-1 [2524 kB] Get:309 http://deb.debian.org/debian/ jessie/main r-cran-r.methodss3 amd64 1.6.1-1 [54.4 kB] Get:310 http://deb.debian.org/debian/ jessie/main r-cran-matrixstats amd64 0.10.3-1 [206 kB] Get:311 http://deb.debian.org/debian/ jessie/main r-bioc-gviz all 1.8.4-1 [3111 kB] Get:312 http://deb.debian.org/debian/ jessie/main r-cran-hwriter all 1.3.2-1 [137 kB] Get:313 http://deb.debian.org/debian/ jessie/main r-bioc-shortread amd64 1.22.0-1 [4163 kB] Get:314 http://deb.debian.org/debian/ jessie/main r-cran-abind all 1.4-0-2 [36.5 kB] Get:315 http://deb.debian.org/debian/ jessie/main r-cran-boot all 1.3-13-1 [571 kB] Get:316 http://deb.debian.org/debian/ jessie/main r-cran-mass amd64 7.3-34-1 [1015 kB] Get:317 http://deb.debian.org/debian/ jessie/main r-cran-class amd64 7.3-11-1 [81.3 kB] Get:318 http://deb.debian.org/debian/ jessie/main r-cran-multicore amd64 0.2-1 [19.2 kB] Get:319 http://deb.debian.org/debian/ jessie/main r-cran-domc all 1.3.3-1 [157 kB] Get:320 http://deb.debian.org/debian/ jessie/main r-cran-doparallel amd64 1.0.8-1 [182 kB] Get:321 http://deb.debian.org/debian/ jessie/main r-cran-kernsmooth amd64 2.23-13-1 [81.4 kB] Get:322 http://deb.debian.org/debian/ jessie/main r-cran-matrix amd64 1.1-4-1 [2918 kB] Get:323 http://deb.debian.org/debian/ jessie/main r-cran-nlme amd64 3.1.117-1 [1995 kB] Get:324 http://deb.debian.org/debian/ jessie/main r-cran-mgcv amd64 1.8-3-1 [1728 kB] Get:325 http://deb.debian.org/debian/ jessie/main r-cran-spatial amd64 7.3-8-1 [119 kB] Get:326 http://deb.debian.org/debian/ jessie/main r-doc-html all 3.1.1-1+deb8u1 [529 kB] Get:327 http://deb.debian.org/debian/ jessie/main r-recommended all 3.1.1-1+deb8u1 [2856 B] Get:328 http://deb.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:329 http://deb.debian.org/debian/ jessie/main x11-utils amd64 7.7+2 [191 kB] Get:330 http://deb.debian.org/debian/ jessie/main x11-xserver-utils amd64 7.7+3+b1 [158 kB] Get:331 http://deb.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:332 http://deb.debian.org/debian/ jessie/main xml-core all 0.13+nmu2 [24.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 188 MB in 24s (7766 kB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-13.1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20140620-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20140620-2) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libnettle4:amd64. Preparing to unpack .../libnettle4_2.7.1-5+deb8u2_amd64.deb ... Unpacking libnettle4:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libhogweed2:amd64. Preparing to unpack .../libhogweed2_2.7.1-5+deb8u2_amd64.deb ... Unpacking libhogweed2:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+deb8u1_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+deb8u1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.20.7-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.20.7-1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.2-3+deb8u3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.2-3+deb8u3) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.8-6+deb8u7_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-5+b1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-5+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... 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Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.40+dfsg-1+deb8u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u6_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Selecting previously unselected package perl-modules. Preparing to unpack .../perl-modules_5.20.2-3+deb8u11_all.deb ... Unpacking perl-modules (5.20.2-3+deb8u11) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl (5.20.2-3+deb8u11) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libpng12-0:amd64. Preparing to unpack .../libpng12-0_1.2.50-2+deb8u3_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.50-2+deb8u3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.5.2-3+deb8u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.34-1_all.deb ... Unpacking fonts-dejavu-core (2.34-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.0-6.3+deb8u1_all.deb ... Unpacking fontconfig-config (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../fontconfig_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking fontconfig (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libasan1:amd64. Preparing to unpack .../libasan1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libasan1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libatm1:amd64. Preparing to unpack .../libatm1_1%3a2.5.1-1.5_amd64.deb ... Unpacking libatm1:amd64 (1:2.5.1-1.5) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../libatomic1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libatomic1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../libpixman-1-0_0.32.6-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.32.6-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. 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Setting up libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0 to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode Setting up iproute2 (3.16.0-2) ... Setting up ifupdown (0.7.53.1) ... Creating /etc/network/interfaces. Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up manpages (3.74-1) ... Setting up netbase (5.3) ... Setting up bzip2 (1.0.6-7+b3) ... Setting up dbus (1.8.22-0+deb8u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up krb5-locales (1.12.1+dfsg-19+deb8u4) ... Setting up patch (2.7.5-1+deb8u1) ... Setting up xz-utils (5.1.1alpha+20120614-2+b3) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up autotools-dev (20140911.1) ... Setting up binutils (2.25-5+deb8u1) ... Setting up libc-dev-bin (2.19-18+deb8u10) ... Setting up linux-libc-dev:amd64 (3.16.56-1+deb8u1) ... Setting up libc6-dev:amd64 (2.19-18+deb8u10) ... Setting up cpp-4.9 (4.9.2-10+deb8u1) ... Setting up cpp (4:4.9.2-2) ... Setting up libgcc-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Setting up gcc-4.9 (4.9.2-10+deb8u1) ... Setting up gcc (4:4.9.2-2) ... Setting up libstdc++-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Setting up g++-4.9 (4.9.2-10+deb8u1) ... Setting up g++ (4:4.9.2-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up make (4.0-8.1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libdpkg-perl (1.17.27) ... Setting up dpkg-dev (1.17.27) ... Setting up build-essential (11.7) ... Setting up bzip2-doc (1.0.6-7) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done. Setting up cdbs (0.4.130+deb8u1) ... Setting up libfakeroot:amd64 (1.20.2-1) ... Setting up fakeroot (1.20.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libgfortran-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Setting up gfortran-4.9 (4.9.2-10+deb8u1) ... Setting up gfortran (4:4.9.2-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up libalgorithm-merge-perl (0.08-2) ... Setting up libarchive-extract-perl (0.72-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:amd64 (1.0.6-7+b3) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libfile-basedir-perl (0.03-1) ... Setting up libfile-desktopentry-perl (0.07-1) ... Setting up libfile-fcntllock-perl (0.22-1+b1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up shared-mime-info (1.3-1) ... Setting up libfile-mimeinfo-perl (0.26-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libglib2.0-data (2.42.1-1) ... Setting up liburi-perl (1.64-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.3.1-12) ... Setting up libjpeg-dev (1:1.3.1-12) ... Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2+b3) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libtinfo-dev:amd64 (5.9+20140913-1+deb8u3) ... Setting up libncurses5-dev:amd64 (5.9+20140913-1+deb8u3) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpcre3-dev:amd64 (2:8.35-3.3+deb8u4) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libpng12-dev:amd64 (1.2.50-2+deb8u3) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libreadline6-dev:amd64 (6.3-8+b3) ... Setting up libreadline-dev:amd64 (6.3-8+b3) ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libtie-ixhash-perl (1.23-1) ... Setting up libx11-protocol-perl (0.56-6) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up zip (3.0-8) ... Setting up unzip (6.0-16+deb8u3) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Setting up r-base-core (3.1.1-1+deb8u1) ... Creating config file /etc/R/Renviron with new version Setting up littler (0.2.1-1) ... Setting up manpages-dev (3.74-1) ... Setting up r-base-dev (3.1.1-1+deb8u1) ... Setting up r-cran-dbi (0.3.1-1) ... Setting up r-cran-rsqlite (0.11.4-3) ... Setting up r-bioc-biocgenerics (0.10.0-1) ... Setting up r-bioc-biobase (2.24.0-1) ... Setting up r-bioc-iranges (1.22.10-1) ... Setting up r-bioc-genomeinfodb (1.0.2-2) ... Setting up r-bioc-annotationdbi (1.26.1-1) ... Setting up r-cran-codetools (0.2-9-1) ... Setting up r-cran-iterators (1.0.7-1) ... Setting up r-cran-foreach (1.4.2-1) ... Setting up r-cran-checkmate (1.5.0-1) ... Setting up r-cran-bbmisc (1.7-1) ... Setting up r-cran-brew (1.0-6-1) ... Setting up r-cran-digest (0.6.4-1) ... Setting up r-cran-pkgkitten (0.1.2-1) ... Setting up r-cran-rcpp (0.11.3-1) ... Setting up r-cran-plyr (1.8.1-2) ... Setting up r-cran-stringr (0.6.2-2) ... Setting up r-cran-base64enc (0.1-2-1) ... Setting up r-cran-sendmailr (1.2-1-1) ... Setting up r-cran-fail (1.2-1) ... Setting up r-cran-batchjobs (1.4-1) ... Setting up r-bioc-biocparallel (0.6.1-1) ... Setting up r-cran-xml (3.98-1.1-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-cran-rcurl (1.95-4.3-1+deb8u1) ... Setting up r-bioc-biomart (2.20.0-1) ... Setting up r-bioc-xvector (0.4.0-1) ... Setting up r-bioc-biostrings (2.32.1-1) ... Setting up r-cran-dichromat (2.0.0-3) ... Setting up r-cran-foreign (0.8.61-1) ... Setting up r-cran-chron (2.3-45-1) ... Setting up r-cran-lattice (0.20-29-1) ... Setting up r-cran-cluster (1.15.3-1) ... Setting up r-cran-survival (2.37-7-1) ... Setting up r-cran-formula (1.1-2-1) ... Setting up r-cran-rpart (4.1-8-1) ... Setting up r-cran-rcolorbrewer (1.0-5-2) ... Setting up r-cran-latticeextra (0.6-26-1) ... Setting up r-cran-hmisc (3.14-5-1) ... Setting up r-cran-nnet (7.3-8-1) ... Setting up r-cran-colorspace (1.2-4-1) ... Setting up r-cran-munsell (0.4.2-1) ... Setting up r-cran-labeling (0.3-1) ... Setting up r-cran-scales (0.2.4-1) ... Setting up r-bioc-genomicranges (1.16.4-2) ... Setting up r-bioc-rsamtools (1.16.1-2) ... Setting up r-bioc-bsgenome (1.32.0-1) ... Setting up r-bioc-genomicalignments (1.0.6-1) ... Setting up r-bioc-rtracklayer (1.24.2-1) ... Setting up r-bioc-genomicfeatures (1.16.3-1) ... Setting up r-bioc-variantannotation (1.10.5-1) ... Setting up r-bioc-biovizbase (1.12.3-1) ... Setting up r-cran-r.methodss3 (1.6.1-1) ... Setting up r-cran-matrixstats (0.10.3-1) ... Setting up r-bioc-gviz (1.8.4-1) ... Setting up r-cran-hwriter (1.3.2-1) ... Setting up r-bioc-shortread (1.22.0-1) ... Setting up r-cran-abind (1.4-0-2) ... Setting up r-cran-boot (1.3-13-1) ... Setting up r-cran-mass (7.3-34-1) ... Setting up r-cran-class (7.3-11-1) ... Setting up r-cran-multicore (0.2-1) ... Setting up r-cran-domc (1.3.3-1) ... Setting up r-cran-doparallel (1.0.8-1) ... Setting up r-cran-kernsmooth (2.23-13-1) ... Setting up r-cran-matrix (1.1-4-1) ... Setting up r-cran-nlme (3.1.117-1) ... Setting up r-cran-mgcv (1.8-3-1) ... Setting up r-cran-spatial (7.3-8-1) ... Setting up r-doc-html (3.1.1-1+deb8u1) ... Setting up r-recommended (3.1.1-1+deb8u1) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up x11-utils (7.7+2) ... Setting up x11-xserver-utils (7.7+3+b1) ... Setting up xdg-user-dirs (0.15-2) ... Setting up xml-core (0.13+nmu2) ... Setting up libwww-perl (6.08-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libnet-dbus-perl (1.0.0-2+b2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for sgml-base (1.26+nmu4) ... 1m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', '-y', 'install', 'r-bioc-gviz=1.8.4-1'] 1m13.4s INFO: Running scripts post_install 1m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_install_exceptions'] 1m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_install_exceptions'] 1m13.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 1m14.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 1m16.4s ERROR: WARN: Broken symlinks: /usr/share/man/man3/cerff.3.gz -> cerf.3.gz (manpages-dev) /usr/share/man/man3/cerfcf.3.gz -> cerf.3.gz (manpages-dev) /usr/share/man/man3/cerfcl.3.gz -> cerf.3.gz (manpages-dev) /usr/share/man/man3/cerfl.3.gz -> cerf.3.gz (manpages-dev) 1m17.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', '-ac', '--ignore-obsolete'] 1m19.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', '-ac', '--ignore-obsolete'] 1m19.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.0s DUMP: 0.15.6 1m20.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.0s INFO: Running adequate version 0.15.6 now. 1m20.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'r-bioc-gviz'] 1m20.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'r-bioc-gviz'] 1m20.1s INFO: Running scripts pre_remove 1m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_exceptions'] 1m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/pre_remove_exceptions'] 1m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m26.2s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed autotools-dev autotools-dev 20140911.1 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed binutils binutils 2.25-5+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed build-essential build-essential 11.7 install ok installed bzip2 bzip2 1.0.6-7+b3 install ok installed bzip2-doc bzip2-doc 1.0.6-7 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed cdbs cdbs 0.4.130+deb8u1 install ok installed coreutils coreutils 8.23-4 install ok installed cpp cpp 4:4.9.2-2 install ok installed cpp-4.9 cpp-4.9 4.9.2-10+deb8u1 install ok installed dash dash 0.5.7-4+b1 install ok installed dbus dbus 1.8.22-0+deb8u1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed dpkg-dev dpkg-dev 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed fakeroot fakeroot 1.20.2-1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed g++ g++ 4:4.9.2-2 install ok installed g++-4.9 g++-4.9 4.9.2-10+deb8u1 install ok installed gcc gcc 4:4.9.2-2 install ok installed gcc-4.9 gcc-4.9 4.9.2-10+deb8u1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gfortran gfortran 4:4.9.2-2 install ok installed gfortran-4.9 gfortran-4.9 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed ifupdown ifupdown 0.7.53.1 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed iproute2 iproute2 3.16.0-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.1-6+deb8u3 install ok installed isc-dhcp-common isc-dhcp-common 4.3.1-6+deb8u3 install ok installed krb5-locales krb5-locales 1.12.1+dfsg-19+deb8u4 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.09-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.02-3 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-3+b1 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libarchive-extract-perl libarchive-extract-perl 0.72-1 install ok installed libasan1:amd64 libasan1 4.9.2-10+deb8u1 install ok installed libatm1:amd64 libatm1 1:2.5.1-1.5 install ok installed libatomic1:amd64 libatomic1 4.9.2-10+deb8u1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libblas-common libblas-common 1.2.20110419-10 install ok installed libblas-dev libblas-dev 1.2.20110419-10 install ok installed libblas3 libblas3 1.2.20110419-10 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd0:amd64 libbsd0 0.7.0-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc-dev-bin libc-dev-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libc6-dev:amd64 libc6-dev 2.19-18+deb8u10 install ok installed libcairo2:amd64 libcairo2 1.14.0-2.1+deb8u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.4-2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.04-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.09-1 install ok installed libcilkrts5:amd64 libcilkrts5 4.9.2-10+deb8u1 install ok installed libclass-c3-perl libclass-c3-perl 0.26-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.13-2+b1 install ok installed libcloog-isl4:amd64 libcloog-isl4 0.18.2-1+b2 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcpan-meta-perl libcpan-meta-perl 2.142690-1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libcurl3:amd64 libcurl3 7.38.0-4+deb8u11 install ok installed libdata-optlist-perl libdata-optlist-perl 0.109-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.8.22-0+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libdpkg-perl libdpkg-perl 1.17.27 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.58-2 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.58-2 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.58-2 install ok installed libdrm2:amd64 libdrm2 2.4.58-2 install ok installed libedit2:amd64 libedit2 3.1-20140620-2 install ok installed libelf1:amd64 libelf1 0.159-4.2 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libfakeroot:amd64 libfakeroot 1.20.2-1 install ok installed libfcgi-perl libfcgi-perl 0.77-1+deb8u1 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfile-basedir-perl libfile-basedir-perl 0.03-1 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.07-1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-1+b1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.26-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.2-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u2 install ok installed libgcc-4.9-dev:amd64 libgcc-4.9-dev 4.9.2-10+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgfortran-4.9-dev:amd64 libgfortran-4.9-dev 4.9.2-10+deb8u1 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 10.3.2-1+deb8u1 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 10.3.2-1+deb8u1 install ok installed libglapi-mesa:amd64 libglapi-mesa 10.3.2-1+deb8u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.42.1-1+b1 install ok installed libglib2.0-data libglib2.0-data 2.42.1-1 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgomp1:amd64 libgomp1 4.9.2-10+deb8u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1~deb8u1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u4 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 0.9.35-2 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.11-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libice6:amd64 libice6 2:1.0.9-1+b1 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u2 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libisl10:amd64 libisl10 0.12.2-2 install ok installed libitm1:amd64 libitm1 4.9.2-10+deb8u1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjpeg-dev libjpeg-dev 1:1.3.1-12 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:1.3.1-12 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u4 install ok installed liblapack-dev liblapack-dev 3.5.0-4 install ok installed liblapack3 liblapack3 3.5.0-4 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u4 install ok installed libllvm3.5:amd64 libllvm3.5 1:3.5-10 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed liblsan0:amd64 liblsan0 4.9.2-10+deb8u1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma-dev:amd64 liblzma-dev 5.1.1alpha+20120614-2+b3 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmailtools-perl libmailtools-perl 2.13-1 install ok installed libmodule-build-perl libmodule-build-perl 0.421000-2+deb8u1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.1-1 install ok installed libmodule-signature-perl libmodule-signature-perl 0.73-1+deb8u2 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmpc3:amd64 libmpc3 1.0.2-1 install ok installed libmpfr4:amd64 libmpfr4 3.1.2-2 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncurses5-dev:amd64 libncurses5-dev 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-dbus-perl libnet-dbus-perl 1.0.0-2+b2 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.01-3 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpackage-constants-perl libpackage-constants-perl 0.04-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu4 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu4 install ok installed libparams-util-perl libparams-util-perl 1.07-2+b1 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.2-3+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpcre3-dev:amd64 libpcre3-dev 2:8.35-3.3+deb8u4 install ok installed libpcrecpp0:amd64 libpcrecpp0 2:8.35-3.3+deb8u4 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpng12-dev:amd64 libpng12-dev 1.2.50-2+deb8u3 install ok installed libpod-latex-perl libpod-latex-perl 0.61-1 install ok installed libpod-readme-perl libpod-readme-perl 0.11-1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u1 install ok installed libreadline-dev:amd64 libreadline-dev 6.3-8+b3 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadline6-dev:amd64 libreadline6-dev 6.3-8+b3 install ok installed libregexp-common-perl libregexp-common-perl 2013031301-1 install ok installed librtmp1:amd64 librtmp1 2.4+20150115.gita107cef-1+deb8u1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u1 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103010-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.4.3-4.1+deb8u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libstdc++-4.9-dev:amd64 libstdc++-4.9-dev 4.9.2-10+deb8u1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libtcl8.5:amd64 libtcl8.5 8.5.17-1 install ok installed libterm-ui-perl libterm-ui-perl 0.42-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b2 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-1 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo-dev:amd64 libtinfo-dev 5.9+20140913-1+deb8u3 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtk8.5:amd64 libtk8.5 8.5.17-1 install ok installed libtsan0:amd64 libtsan0 4.9.2-10+deb8u1 install ok installed libtxc-dxtn-s2tc0:amd64 libtxc-dxtn-s2tc0 0~git20131104-1.1 install ok installed libubsan0:amd64 libubsan0 4.9.2-10+deb8u1 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u1 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u1 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-6 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.2-3+deb8u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.12-2+b1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.10-3+b1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.10-3+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.10-3+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.10-3+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.14-1+deb8u1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+b1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.1-2+deb8u1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxi6:amd64 libxi6 2:1.7.4-1+deb8u1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.3-1+b1 install ok installed libxml-parser-perl libxml-parser-perl 2.41-3 install ok installed libxml-twig-perl libxml-twig-perl 1:3.48-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u6 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-1 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed libxrandr2:amd64 libxrandr2 2:1.4.2-1+deb8u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxshmfence1:amd64 libxshmfence1 1.1-4 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libxtst6:amd64 libxtst6 2:1.2.2-1+deb8u1 install ok installed libxv1:amd64 libxv1 2:1.0.10-1+deb8u1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.3-1+b1 install ok installed linux-libc-dev:amd64 linux-libc-dev 3.16.56-1+deb8u1 install ok installed littler littler 0.2.1-1 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed make make 4.0-8.1 install ok installed manpages manpages 3.74-1 install ok installed manpages-dev manpages-dev 3.74-1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed openssl openssl 1.0.1t-1+deb8u8 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed patch patch 2.7.5-1+deb8u1 install ok installed perl perl 5.20.2-3+deb8u11 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed r-base-core r-base-core 3.1.1-1+deb8u1 install ok installed r-base-dev r-base-dev 3.1.1-1+deb8u1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.26.1-1 install ok installed r-bioc-biobase r-bioc-biobase 2.24.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.10.0-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 0.6.1-1 install ok installed r-bioc-biomart r-bioc-biomart 2.20.0-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.32.1-1 install ok installed r-bioc-biovizbase r-bioc-biovizbase 1.12.3-1 install ok installed r-bioc-bsgenome r-bioc-bsgenome 1.32.0-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.0.2-2 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.0.6-1 install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.16.3-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.16.4-2 install ok installed r-bioc-gviz r-bioc-gviz 1.8.4-1 install ok installed r-bioc-iranges r-bioc-iranges 1.22.10-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 1.16.1-2 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.24.2-1 install ok installed r-bioc-shortread r-bioc-shortread 1.22.0-1 install ok installed r-bioc-variantannotation r-bioc-variantannotation 1.10.5-1 install ok installed r-bioc-xvector r-bioc-xvector 0.4.0-1 install ok installed r-cran-abind r-cran-abind 1.4-0-2 install ok installed r-cran-base64enc r-cran-base64enc 0.1-2-1 install ok installed r-cran-batchjobs r-cran-batchjobs 1.4-1 install ok installed r-cran-bbmisc r-cran-bbmisc 1.7-1 install ok installed r-cran-bitops r-cran-bitops 1.0-6-1 install ok installed r-cran-boot r-cran-boot 1.3-13-1 install ok installed r-cran-brew r-cran-brew 1.0-6-1 install ok installed r-cran-checkmate r-cran-checkmate 1.5.0-1 install ok installed r-cran-chron r-cran-chron 2.3-45-1 install ok installed r-cran-class r-cran-class 7.3-11-1 install ok installed r-cran-cluster r-cran-cluster 1.15.3-1 install ok installed r-cran-codetools r-cran-codetools 0.2-9-1 install ok installed r-cran-colorspace r-cran-colorspace 1.2-4-1 install ok installed r-cran-dbi r-cran-dbi 0.3.1-1 install ok installed r-cran-dichromat r-cran-dichromat 2.0.0-3 install ok installed r-cran-digest r-cran-digest 0.6.4-1 install ok installed r-cran-domc r-cran-domc 1.3.3-1 install ok installed r-cran-doparallel r-cran-doparallel 1.0.8-1 install ok installed r-cran-fail r-cran-fail 1.2-1 install ok installed r-cran-foreach r-cran-foreach 1.4.2-1 install ok installed r-cran-foreign r-cran-foreign 0.8.61-1 install ok installed r-cran-formula r-cran-formula 1.1-2-1 install ok installed r-cran-hmisc r-cran-hmisc 3.14-5-1 install ok installed r-cran-hwriter r-cran-hwriter 1.3.2-1 install ok installed r-cran-iterators r-cran-iterators 1.0.7-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-13-1 install ok installed r-cran-labeling r-cran-labeling 0.3-1 install ok installed r-cran-lattice r-cran-lattice 0.20-29-1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-26-1 install ok installed r-cran-mass r-cran-mass 7.3-34-1 install ok installed r-cran-matrix r-cran-matrix 1.1-4-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.10.3-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-3-1 install ok installed r-cran-multicore r-cran-multicore 0.2-1 install ok installed r-cran-munsell r-cran-munsell 0.4.2-1 install ok installed r-cran-nlme r-cran-nlme 3.1.117-1 install ok installed r-cran-nnet r-cran-nnet 7.3-8-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.2-1 install ok installed r-cran-plyr r-cran-plyr 1.8.1-2 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.6.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.0-5-2 install ok installed r-cran-rcpp r-cran-rcpp 0.11.3-1 install ok installed r-cran-rcurl r-cran-rcurl 1.95-4.3-1+deb8u1 install ok installed r-cran-rpart r-cran-rpart 4.1-8-1 install ok installed r-cran-rsqlite r-cran-rsqlite 0.11.4-3 install ok installed r-cran-scales r-cran-scales 0.2.4-1 install ok installed r-cran-sendmailr r-cran-sendmailr 1.2-1-1 install ok installed r-cran-spatial r-cran-spatial 7.3-8-1 install ok installed r-cran-stringr r-cran-stringr 0.6.2-2 install ok installed r-cran-survival r-cran-survival 2.37-7-1 install ok installed r-cran-xml r-cran-xml 3.98-1.1-1 install ok installed r-doc-html r-doc-html 3.1.1-1+deb8u1 install ok installed r-recommended r-recommended 3.1.1-1+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed rename rename 0.20-3 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed sgml-base sgml-base 1.26+nmu4 install ok installed shared-mime-info shared-mime-info 1.3-1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed unzip unzip 6.0-16+deb8u3 install ok installed util-linux util-linux 2.25.2-6 install ok installed x11-common x11-common 1:7.7+7 install ok installed x11-utils x11-utils 7.7+2 install ok installed x11-xserver-utils x11-xserver-utils 7.7+3+b1 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2 install ok installed xdg-utils xdg-utils 1.1.0~rc1+git20111210-7.4+deb8u1 install ok installed xml-core xml-core 0.13+nmu2 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2+b3 install ok installed zip zip 3.0-8 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.8.dfsg-2+b1 1m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', 'remove', 'autotools-dev', 'binutils', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cdbs', 'cpp', 'cpp-4.9', 'dbus', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'g++-', 'g++-4.9', 'gcc', 'gcc-4.9', 'gfortran', 'gfortran-4.9', 'ifupdown', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'krb5-locales', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libarchive-extract-perl', 'libasan1:amd64', 'libatm1:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcap-ng0:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libcloog-isl4:amd64', 'libcpan-meta-perl', 'libcurl3:amd64', 'libdata-optlist-perl', 'libdata-section-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdns-export100', 'libdpkg-perl', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgcc-4.9-dev:amd64', 'libgdbm3:amd64', 'libgfortran-4.9-dev:amd64', 'libgfortran3:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libisl10:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack-dev', 'liblapack3', 'libldap-2.4-2:amd64', 'libllvm3.5:amd64', 'liblog-message-perl', 'liblog-message-simple-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-signature-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmro-compat-perl', 'libncurses5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-util-perl', 'libpciaccess0:amd64', 'libpcre3-dev:amd64', 'libpcrecpp0:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng12-dev:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline6-dev:amd64', 'libregexp-common-perl', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsoftware-license-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstdc++-4.9-dev:amd64', 'libsub-exporter-perl', 'libsub-install-perl', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.5:amd64', 'libtsan0:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libubsan0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtables10', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'linux-libc-dev:amd64', 'littler', 'make', 'manpages', 'manpages-dev', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules', 'r-base-core', 'r-base-dev', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-shortread', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-boot', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-fail', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-hmisc', 'r-cran-hwriter', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r.methodss3', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-spatial', 'r-cran-stringr', 'r-cran-survival', 'r-cran-xml', 'r-doc-html', 'r-recommended', 'rename', 'sgml-base', 'shared-mime-info', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-gviz'] 1m30.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-4.9 dbus dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-4.9 gcc gcc-4.9 gfortran gfortran-4.9 ifupdown iproute2 isc-dhcp-client isc-dhcp-common krb5-locales libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive-extract-perl libasan1 libatm1 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcap-ng0 libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libcurl3 libdata-optlist-perl libdata-section-perl libdatrie1 libdbus-1-3 libdns-export100 libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libfcgi-perl libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran-4.9-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libllvm3.5 liblog-message-perl liblog-message-simple-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libp11-kit0 libpackage-constants-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-util-perl libpciaccess0 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev libpod-latex-perl libpod-readme-perl libquadmath0 libreadline-dev libreadline6-dev libregexp-common-perl librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsm6 libsoftware-license-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libtasn1-6 libtcl8.5 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.5 libtsan0 libtxc-dxtn-s2tc0 libubsan0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev littler make manpages manpages-dev netbase openssl patch perl perl-modules r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-boot r-cran-brew r-cran-checkmate r-cran-chron r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-domc r-cran-doparallel r-cran-fail r-cran-foreach r-cran-foreign r-cran-formula r-cran-hmisc r-cran-hwriter r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-spatial r-cran-stringr r-cran-survival r-cran-xml r-doc-html r-recommended rename sgml-base shared-mime-info unzip x11-common x11-utils x11-xserver-utils xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 332 to remove and 0 not upgraded. After this operation, 491 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24753 files and directories currently installed.) Removing autotools-dev (20140911.1) ... Removing r-base-dev (3.1.1-1+deb8u1) ... Removing gfortran (4:4.9.2-2) ... Removing build-essential (11.7) ... Removing g++ (4:4.9.2-2) ... Removing dpkg-dev (1.17.27) ... Removing bzip2 (1.0.6-7+b3) ... Removing bzip2-doc (1.0.6-7) ... Removing libnet-dbus-perl (1.0.0-2+b2) ... Removing libxml-twig-perl (1:3.48-1) ... Removing libxml-parser-perl (2.41-3) ... Removing cdbs (0.4.130+deb8u1) ... Removing x11-xserver-utils (7.7+3+b1) ... Removing dbus (1.8.22-0+deb8u1) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing fakeroot (1.20.2-1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing r-recommended (3.1.1-1+deb8u1) ... Removing r-bioc-gviz (1.8.4-1) ... Removing r-bioc-biovizbase (1.12.3-1) ... Removing r-cran-hmisc (3.14-5-1) ... Removing r-cran-rpart (4.1-8-1) ... Removing r-cran-survival (2.37-7-1) ... Removing r-cran-mgcv (1.8-3-1) ... Removing r-cran-matrix (1.1-4-1) ... Removing x11-utils (7.7+2) ... Removing g++-4.9 (4.9.2-10+deb8u1) ... Removing gfortran-4.9 (4.9.2-10+deb8u1) ... Removing ifupdown (0.7.53.1) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Removing iproute2 (3.16.0-2) ... Removing isc-dhcp-common (4.3.1-6+deb8u3) ... Removing krb5-locales (1.12.1+dfsg-19+deb8u4) ... Removing libsoftware-license-perl (0.103010-3) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.26-1) ... Removing libalgorithm-c3-perl (0.09-1) ... Removing libalgorithm-merge-perl (0.08-2) ... Removing libalgorithm-diff-xs-perl (0.04-3+b1) ... Removing libalgorithm-diff-perl (1.19.02-3) ... Removing libarchive-extract-perl (0.72-1) ... Removing libstdc++-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Removing libgfortran-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Removing libatm1:amd64 (1:2.5.1-1.5) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing r-cran-scales (0.2.4-1) ... Removing r-bioc-shortread (1.22.0-1) ... Removing liblapack-dev (3.5.0-4) ... Removing r-cran-kernsmooth (2.23-13-1) ... Removing libblas-dev (1.2.20110419-10) ... Removing libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Removing libllvm3.5:amd64 (1:3.5-10) ... Removing libedit2:amd64 (3.1-20140620-2) ... Removing libbsd0:amd64 (0.7.0-2) ... Removing libbz2-dev:amd64 (1.0.6-7+b3) ... Removing libpng12-dev:amd64 (1.2.50-2+deb8u3) ... Removing zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Removing libncurses5-dev:amd64 (5.9+20140913-1+deb8u3) ... Removing libpcre3-dev:amd64 (2:8.35-3.3+deb8u4) ... Removing libjpeg-dev (1:1.3.1-12) ... Removing libjpeg62-turbo-dev:amd64 (1:1.3.1-12) ... Removing libc6-dev:amd64 (2.19-18+deb8u10) ... Removing libc-dev-bin (2.19-18+deb8u10) ... Removing libcap-ng0:amd64 (0.7.4-2) ... Removing libcgi-fast-perl (1:2.04-1) ... Removing libcgi-pm-perl (4.09-1) ... Removing libclass-c3-xs-perl (0.13-2+b1) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.142690-1) ... Removing r-bioc-variantannotation (1.10.5-1) ... Removing r-bioc-genomicfeatures (1.16.3-1) ... Removing r-bioc-rtracklayer (1.24.2-1) ... Removing r-bioc-biomart (2.20.0-1) ... Removing r-cran-rcurl (1.95-4.3-1+deb8u1) ... Removing libcurl3:amd64 (7.38.0-4+deb8u11) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.109-1) ... Removing libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdpkg-perl (1.17.27) ... Removing libdrm-intel1:amd64 (2.4.58-2) ... Removing libdrm-nouveau2:amd64 (2.4.58-2) ... Removing libdrm-radeon1:amd64 (2.4.58-2) ... Removing libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Removing libdrm2:amd64 (2.4.58-2) ... Removing libelf1:amd64 (0.159-4.2) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libfakeroot:amd64 (1.20.2-1) ... Removing libfcgi-perl (0.77-1+deb8u1) ... Removing librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libfile-mimeinfo-perl (0.26-1) ... Removing shared-mime-info (1.3-1) ... Removing libfile-desktopentry-perl (0.07-1) ... Removing libfile-basedir-perl (0.03-1) ... Removing libfile-fcntllock-perl (0.22-1+b1) ... Removing libhtml-format-perl (2.11-1) ... Removing libfont-afm-perl (1.20-1) ... Removing libfontenc1:amd64 (1:1.1.2-1+b2) ... Removing xml-core (0.13+nmu2) ... Removing sgml-base (1.26+nmu4) ... Removing rename (0.20-3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing r-cran-nlme (3.1.117-1) ... Removing r-cran-cluster (1.15.3-1) ... Removing libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Removing libglib2.0-data (2.42.1-1) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing r-bioc-genomicalignments (1.0.6-1) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libhtml-form-perl (6.03-1) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Removing libmailtools-perl (2.13-1) ... Removing libnet-smtp-ssl-perl (1.01-3) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing libterm-ui-perl (0.42-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing liblzma-dev:amd64 (5.1.1alpha+20120614-2+b3) ... Removing libmodule-pluggable-perl (5.1-1) ... Removing libmodule-signature-perl (0.73-1+deb8u2) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libpackage-constants-perl (0.04-1) ... Removing libparams-util-perl (1.07-2+b1) ... Removing libpciaccess0:amd64 (0.13.2-3+b1) ... Removing libpcrecpp0:amd64 (2:8.35-3.3+deb8u4) ... Removing libpod-latex-perl (0.61-1) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-readme-perl (0.11-1) ... Removing libreadline-dev:amd64 (6.3-8+b3) ... Removing libreadline6-dev:amd64 (6.3-8+b3) ... Removing libregexp-common-perl (2013031301-1) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing r-bioc-annotationdbi (1.26.1-1) ... Removing libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Removing libsub-install-perl (0.928-1) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libtext-soundex-perl (3.4-1+b2) ... Removing libtext-template-perl (1.46-1) ... Removing libtie-ixhash-perl (1.23-1) ... Removing libtinfo-dev:amd64 (5.9+20140913-1+deb8u3) ... Removing libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... Removing libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b1) ... Removing libx11-protocol-perl (0.56-6) ... Removing libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Removing libxcb-sync1:amd64 (1.10-3+b1) ... Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Removing libxcb-dri3-0:amd64 (1.10-3+b1) ... Removing libxcb-glx0:amd64 (1.10-3+b1) ... Removing libxcb-present0:amd64 (1.10-3+b1) ... Removing libxcb-shape0:amd64 (1.10-3+b1) ... Removing libxcomposite1:amd64 (1:0.4.4-1) ... Removing libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b1) ... Removing libxv1:amd64 (2:1.0.10-1+deb8u1) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing libxinerama1:amd64 (2:1.1.3-1+b1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing r-cran-xml (3.98-1.1-1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxmuu1:amd64 (2:1.1.2-1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Removing libxshmfence1:amd64 (1.1-4) ... Removing libxtables10 (1.4.21-2+b1) ... Removing linux-libc-dev:amd64 (3.16.56-1+deb8u1) ... Removing make (4.0-8.1) ... Removing manpages-dev (3.74-1) ... Removing manpages (3.74-1) ... Removing patch (2.7.5-1+deb8u1) ... Removing r-bioc-biobase (2.24.0-1) ... Removing r-bioc-bsgenome (1.32.0-1) ... Removing r-cran-abind (1.4-0-2) ... Removing r-cran-boot (1.3-13-1) ... Removing r-cran-chron (2.3-45-1) ... Removing r-cran-class (7.3-11-1) ... Removing r-cran-doparallel (1.0.8-1) ... Removing r-cran-domc (1.3.3-1) ... Removing r-cran-munsell (0.4.2-1) ... Removing r-cran-colorspace (1.2-4-1) ... Removing r-cran-dichromat (2.0.0-3) ... Removing r-cran-foreign (0.8.61-1) ... Removing r-cran-formula (1.1-2-1) ... Removing r-cran-hwriter (1.3.2-1) ... Removing r-cran-labeling (0.3-1) ... Removing r-cran-latticeextra (0.6-26-1) ... Removing r-cran-lattice (0.20-29-1) ... Removing r-cran-mass (7.3-34-1) ... Removing r-cran-matrixstats (0.10.3-1) ... Removing r-cran-multicore (0.2-1) ... Removing r-cran-nnet (7.3-8-1) ... Removing r-cran-r.methodss3 (1.6.1-1) ... Removing r-cran-rcolorbrewer (1.0-5-2) ... Removing r-cran-spatial (7.3-8-1) ... Removing r-doc-html (3.1.1-1+deb8u1) ... Removing xdg-user-dirs (0.15-2) ... Removing xz-utils (5.1.1alpha+20120614-2+b3) ... Removing gcc (4:4.9.2-2) ... Removing gcc-4.9 (4.9.2-10+deb8u1) ... Removing binutils (2.25-5+deb8u1) ... Removing cpp (4:4.9.2-2) ... Removing cpp-4.9 (4.9.2-10+deb8u1) ... Removing libgcc-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Removing libasan1:amd64 (4.9.2-10+deb8u1) ... Removing libatomic1:amd64 (4.9.2-10+deb8u1) ... Removing r-bioc-biocparallel (0.6.1-1) ... Removing r-cran-batchjobs (1.4-1) ... Removing r-cran-plyr (1.8.1-2) ... Removing r-cran-rcpp (0.11.3-1) ... Removing littler (0.2.1-1) ... Removing libcilkrts5:amd64 (4.9.2-10+deb8u1) ... Removing libcloog-isl4:amd64 (0.18.2-1+b2) ... Removing libmpc3:amd64 (1.0.2-1) ... Removing libmpfr4:amd64 (3.1.2-2) ... Removing r-bioc-rsamtools (1.16.1-2) ... Removing libisl10:amd64 (0.12.2-2) ... Removing libitm1:amd64 (4.9.2-10+deb8u1) ... Removing liblsan0:amd64 (4.9.2-10+deb8u1) ... Removing r-cran-rsqlite (0.11.4-3) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libtsan0:amd64 (4.9.2-10+deb8u1) ... Removing libubsan0:amd64 (4.9.2-10+deb8u1) ... Removing r-bioc-genomicranges (1.16.4-2) ... Removing r-bioc-biostrings (2.32.1-1) ... Removing r-bioc-genomeinfodb (1.0.2-2) ... Removing r-cran-sendmailr (1.2-1-1) ... Removing r-cran-base64enc (0.1-2-1) ... Removing r-cran-fail (1.2-1) ... Removing r-cran-bbmisc (1.7-1) ... Removing r-cran-bitops (1.0-6-1) ... Removing r-cran-brew (1.0-6-1) ... Removing r-cran-checkmate (1.5.0-1) ... Removing r-cran-foreach (1.4.2-1) ... Removing r-cran-codetools (0.2-9-1) ... Removing r-cran-dbi (0.3.1-1) ... Removing r-cran-digest (0.6.4-1) ... Removing r-cran-iterators (1.0.7-1) ... Removing r-cran-pkgkitten (0.1.2-1) ... Removing r-cran-stringr (0.6.2-2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing r-bioc-xvector (0.4.0-1) ... Removing r-bioc-iranges (1.22.10-1) ... Removing r-bioc-biocgenerics (0.10.0-1) ... Removing r-base-core (3.1.1-1+deb8u1) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing libtk8.5:amd64 (8.5.17-1) ... Removing libxft2:amd64 (2.3.2-1) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Removing liblapack3 (3.5.0-4) ... Removing libblas3 (1.2.20110419-10) ... Removing libblas-common (1.2.20110419-10) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libice6:amd64 (2:1.0.9-1+b1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing libpaper-utils (1.1.24+nmu4) ... Removing libpaper1:amd64 (1.1.24+nmu4) ... Removing libpixman-1-0:amd64 (0.32.6-3) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Removing libtcl8.5:amd64 (8.5.17-1) ... Removing libthai-data (0.1.21-1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing unzip (6.0-16+deb8u3) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Removing zip (3.0-8) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libx11-data (2:1.6.2-3+deb8u1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libwww-perl (6.08-1) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libnet-http-perl (6.07-1) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing openssl (1.0.1t-1+deb8u8) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.3) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing perl (5.20.2-3+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 1m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', 'remove', 'autotools-dev', 'binutils', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cdbs', 'cpp', 'cpp-4.9', 'dbus', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'g++-', 'g++-4.9', 'gcc', 'gcc-4.9', 'gfortran', 'gfortran-4.9', 'ifupdown', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'krb5-locales', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libarchive-extract-perl', 'libasan1:amd64', 'libatm1:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcap-ng0:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libcloog-isl4:amd64', 'libcpan-meta-perl', 'libcurl3:amd64', 'libdata-optlist-perl', 'libdata-section-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdns-export100', 'libdpkg-perl', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgcc-4.9-dev:amd64', 'libgdbm3:amd64', 'libgfortran-4.9-dev:amd64', 'libgfortran3:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libisl10:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack-dev', 'liblapack3', 'libldap-2.4-2:amd64', 'libllvm3.5:amd64', 'liblog-message-perl', 'liblog-message-simple-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-signature-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmro-compat-perl', 'libncurses5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-util-perl', 'libpciaccess0:amd64', 'libpcre3-dev:amd64', 'libpcrecpp0:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng12-dev:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline6-dev:amd64', 'libregexp-common-perl', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsoftware-license-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstdc++-4.9-dev:amd64', 'libsub-exporter-perl', 'libsub-install-perl', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.5:amd64', 'libtsan0:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libubsan0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtables10', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'linux-libc-dev:amd64', 'littler', 'make', 'manpages', 'manpages-dev', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules', 'r-base-core', 'r-base-dev', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-shortread', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-boot', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-fail', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-hmisc', 'r-cran-hwriter', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r.methodss3', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-spatial', 'r-cran-stringr', 'r-cran-survival', 'r-cran-xml', 'r-doc-html', 'r-recommended', 'rename', 'sgml-base', 'shared-mime-info', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-gviz'] 1m30.9s INFO: Running scripts post_remove 1m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_remove_exceptions'] 1m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_remove_exceptions'] 1m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg', '--purge', 'autotools-dev', 'binutils', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cdbs', 'cpp', 'cpp-4.9', 'dbus', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'g++', 'g++-4.9', 'gcc', 'gcc-4.9', 'gfortran', 'gfortran-4.9', 'ifupdown', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'krb5-locales', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libarchive-extract-perl', 'libasan1:amd64', 'libatm1:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcap-ng0:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libcloog-isl4:amd64', 'libcpan-meta-perl', 'libcurl3:amd64', 'libdata-optlist-perl', 'libdata-section-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdns-export100', 'libdpkg-perl', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgcc-4.9-dev:amd64', 'libgdbm3:amd64', 'libgfortran-4.9-dev:amd64', 'libgfortran3:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libisl10:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack-dev', 'liblapack3', 'libldap-2.4-2:amd64', 'libllvm3.5:amd64', 'liblog-message-perl', 'liblog-message-simple-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-signature-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmro-compat-perl', 'libncurses5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-util-perl', 'libpciaccess0:amd64', 'libpcre3-dev:amd64', 'libpcrecpp0:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng12-dev:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline6-dev:amd64', 'libregexp-common-perl', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsoftware-license-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstdc++-4.9-dev:amd64', 'libsub-exporter-perl', 'libsub-install-perl', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.5:amd64', 'libtsan0:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libubsan0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtables10', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'linux-libc-dev:amd64', 'littler', 'make', 'manpages', 'manpages-dev', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules', 'r-base-core', 'r-base-dev', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-shortread', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-boot', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-fail', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-hmisc', 'r-cran-hwriter', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r.methodss3', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-spatial', 'r-cran-stringr', 'r-cran-survival', 'r-cran-xml', 'r-doc-html', 'r-recommended', 'rename', 'sgml-base', 'shared-mime-info', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 1m32.8s DUMP: dpkg: warning: ignoring request to remove autotools-dev which isn't installed (Reading database ... 7588 files and directories currently installed.) Removing binutils (2.25-5+deb8u1) ... Purging configuration files for binutils (2.25-5+deb8u1) ... dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed Removing ca-certificates (20141019+deb8u3) ... Purging configuration files for ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cdbs which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-4.9 which isn't installed Removing dbus (1.8.22-0+deb8u1) ... Purging configuration files for dbus (1.8.22-0+deb8u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory Removing dpkg-dev (1.17.27) ... Purging configuration files for dpkg-dev (1.17.27) ... Removing fakeroot (1.20.2-1) ... Purging configuration files for fakeroot (1.20.2-1) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-4.9 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-4.9 which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-4.9 which isn't installed Removing ifupdown (0.7.53.1) ... Purging configuration files for ifupdown (0.7.53.1) ... Removing iproute2 (3.16.0-2) ... Purging configuration files for iproute2 (3.16.0-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Purging configuration files for isc-dhcp-client (4.3.1-6+deb8u3) ... dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libarchive-extract-perl which isn't installed Removing libasan1:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libasan1:amd64 (4.9.2-10+deb8u1) ... Removing libatm1:amd64 (1:2.5.1-1.5) ... Purging configuration files for libatm1:amd64 (1:2.5.1-1.5) ... Removing libatomic1:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libatomic1:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas-dev which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed Removing libbsd0:amd64 (0.7.0-2) ... Purging configuration files for libbsd0:amd64 (0.7.0-2) ... dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Purging configuration files for libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcap-ng0:amd64 (0.7.4-2) ... Purging configuration files for libcap-ng0:amd64 (0.7.4-2) ... dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed Removing libcilkrts5:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libcilkrts5:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed Removing libcloog-isl4:amd64 (0.18.2-1+b2) ... Purging configuration files for libcloog-isl4:amd64 (0.18.2-1+b2) ... dpkg: warning: ignoring request to remove libcpan-meta-perl which isn't installed Removing libcurl3:amd64 (7.38.0-4+deb8u11) ... Purging configuration files for libcurl3:amd64 (7.38.0-4+deb8u11) ... dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libdata-section-perl which isn't installed Removing libdatrie1:amd64 (0.2.8-1) ... Purging configuration files for libdatrie1:amd64 (0.2.8-1) ... Removing libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Purging configuration files for libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed Removing libdrm-intel1:amd64 (2.4.58-2) ... Purging configuration files for libdrm-intel1:amd64 (2.4.58-2) ... Removing libdrm-nouveau2:amd64 (2.4.58-2) ... Purging configuration files for libdrm-nouveau2:amd64 (2.4.58-2) ... Removing libdrm-radeon1:amd64 (2.4.58-2) ... 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Removing libxcomposite1:amd64 (1:0.4.4-1) ... Purging configuration files for libxcomposite1:amd64 (1:0.4.4-1) ... Removing libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Purging configuration files for libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b1) ... Purging configuration files for libxdamage1:amd64 (1:1.1.4-2+b1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Purging configuration files for libxext6:amd64 (2:1.3.3-1) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Purging configuration files for libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libxft2:amd64 (2.3.2-1) ... Purging configuration files for libxft2:amd64 (2.3.2-1) ... Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Purging configuration files for libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing libxinerama1:amd64 (2:1.1.3-1+b1) ... Purging configuration files for libxinerama1:amd64 (2:1.1.3-1+b1) ... dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Purging configuration files for libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Purging configuration files for libxmu6:amd64 (2:1.1.2-1) ... Removing libxmuu1:amd64 (2:1.1.2-1) ... Purging configuration files for libxmuu1:amd64 (2:1.1.2-1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Purging configuration files for libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Purging configuration files for libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... 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Purging configuration files for libxxf86vm1:amd64 (1:1.1.3-1+b1) ... dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... Removing openssl (1.0.1t-1+deb8u8) ... Purging configuration files for openssl (1.0.1t-1+deb8u8) ... dpkg: warning: ignoring request to remove patch which isn't installed dpkg: warning: ignoring request to remove perl which isn't installed Removing perl-modules (5.20.2-3+deb8u11) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... Removing r-base-core (3.1.1-1+deb8u1) ... Purging configuration files for r-base-core (3.1.1-1+deb8u1) ... dpkg: warning: ignoring request to remove r-base-dev which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biomart which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-biovizbase which isn't installed dpkg: warning: ignoring request to remove r-bioc-bsgenome which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicfeatures which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-shortread which isn't installed dpkg: warning: ignoring request to remove r-bioc-variantannotation which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-cran-abind which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-batchjobs which isn't installed dpkg: warning: ignoring request to remove r-cran-bbmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-brew which isn't installed dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove r-cran-chron which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-dichromat which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-domc which isn't installed dpkg: warning: ignoring request to remove r-cran-doparallel which isn't installed dpkg: warning: ignoring request to remove r-cran-fail which isn't installed dpkg: warning: ignoring request to remove r-cran-foreach which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-formula which isn't installed dpkg: warning: ignoring request to remove r-cran-hmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-hwriter which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-multicore which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcurl which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-sendmailr which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed dpkg: warning: ignoring request to remove rename which isn't installed Removing sgml-base (1.26+nmu4) ... Purging configuration files for sgml-base (1.26+nmu4) ... Removing shared-mime-info (1.3-1) ... Purging configuration files for shared-mime-info (1.3-1) ... Removing unzip (6.0-16+deb8u3) ... Purging configuration files for unzip (6.0-16+deb8u3) ... Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... Removing x11-utils (7.7+2) ... Purging configuration files for x11-utils (7.7+2) ... Removing x11-xserver-utils (7.7+3+b1) ... Purging configuration files for x11-xserver-utils (7.7+3+b1) ... Removing xdg-user-dirs (0.15-2) ... Purging configuration files for xdg-user-dirs (0.15-2) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed Removing xml-core (0.13+nmu2) ... Purging configuration files for xml-core (0.13+nmu2) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg', '--purge', 'autotools-dev', 'binutils', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cdbs', 'cpp', 'cpp-4.9', 'dbus', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'g++', 'g++-4.9', 'gcc', 'gcc-4.9', 'gfortran', 'gfortran-4.9', 'ifupdown', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'krb5-locales', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libarchive-extract-perl', 'libasan1:amd64', 'libatm1:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcap-ng0:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libcloog-isl4:amd64', 'libcpan-meta-perl', 'libcurl3:amd64', 'libdata-optlist-perl', 'libdata-section-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdns-export100', 'libdpkg-perl', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgcc-4.9-dev:amd64', 'libgdbm3:amd64', 'libgfortran-4.9-dev:amd64', 'libgfortran3:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libirs-export91', 'libisc-export95', 'libisccfg-export90', 'libisl10:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack-dev', 'liblapack3', 'libldap-2.4-2:amd64', 'libllvm3.5:amd64', 'liblog-message-perl', 'liblog-message-simple-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmodule-build-perl', 'libmodule-pluggable-perl', 'libmodule-signature-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmro-compat-perl', 'libncurses5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpackage-constants-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-util-perl', 'libpciaccess0:amd64', 'libpcre3-dev:amd64', 'libpcrecpp0:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng12-dev:amd64', 'libpod-latex-perl', 'libpod-readme-perl', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline6-dev:amd64', 'libregexp-common-perl', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsoftware-license-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstdc++-4.9-dev:amd64', 'libsub-exporter-perl', 'libsub-install-perl', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.5:amd64', 'libtsan0:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libubsan0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtables10', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'linux-libc-dev:amd64', 'littler', 'make', 'manpages', 'manpages-dev', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules', 'r-base-core', 'r-base-dev', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-shortread', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-boot', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-fail', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-hmisc', 'r-cran-hwriter', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r.methodss3', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-spatial', 'r-cran-stringr', 'r-cran-survival', 'r-cran-xml', 'r-doc-html', 'r-recommended', 'rename', 'sgml-base', 'shared-mime-info', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg', '--purge', 'r-bioc-gviz'] 1m32.8s DUMP: dpkg: warning: ignoring request to remove r-bioc-gviz which isn't installed 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg', '--purge', 'r-bioc-gviz'] 1m32.8s INFO: Running scripts post_purge 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_purge_exceptions'] 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_purge_exceptions'] 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg', '--purge', '--pending'] 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg', '--purge', '--pending'] 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg', '--remove', '--pending'] 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg', '--remove', '--pending'] 1m32.8s INFO: Running scripts post_test 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_test_exceptions'] 1m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'tmp/scripts/post_test_exceptions'] 1m32.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 1m33.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 1m33.6s ERROR: WARN: Broken symlinks: /usr/lib/x86_64-linux-gnu/libfakeroot/libfakeroot-0.so -> libfakeroot-tcp.so 1m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg-divert', '--list'] 1m33.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'dpkg-divert', '--list'] 1m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', 'clean'] 1m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh', 'apt-get', 'clean'] 1m33.7s DEBUG: Recording chroot state 1m34.2s INFO: Warning: Package purging left files on system: /usr/lib/x86_64-linux-gnu/libfakeroot/ owned by: libfakeroot:amd64 /usr/lib/x86_64-linux-gnu/libfakeroot/libfakeroot-0.so -> libfakeroot-tcp.so not owned 1m34.2s INFO: PASS: Installation and purging test. 1m34.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/shm'] 1m34.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/shm'] 1m34.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/console'] 1m34.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/console'] 1m34.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/ptmx'] 1m34.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/ptmx'] 1m34.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/pts'] 1m34.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/dev/pts'] 1m34.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/proc'] 1m34.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh/proc'] 1m34.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 1m34.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwlfvo4kh'] 1m34.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpwlfvo4kh 1m34.6s INFO: PASS: All tests. 1m34.6s INFO: piuparts run ends. ret=0 End: 2022-10-14 19:25:18 GMT