Start: 2022-12-24 17:08:19 GMT Package: ncbi-data Source: ncbi-tools6 Version: 6.1.20120620-8 Installed-Size: 23055 Maintainer: Debian Med Packaging Team Architecture: all Description: Platform-independent data for the NCBI toolkit Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description-md5: 7f8f44c9d5294fddcb8e3938701bc042 Tag: biology::peptidic, field::biology, field::biology:bioinformatics, role::app-data Section: libs Priority: optional Filename: pool/main/n/ncbi-tools6/ncbi-data_6.1.20120620-8_all.deb Size: 3319556 MD5sum: 2101517c521d2a0bfc0a1771ff45d217 SHA1: ed0175eb00a18577a348ed4a9ccb1f20aaff133e SHA256: b78acf037e240432d75bd93b024eca136e61a03c25be8c0e8cc88b2eedd130f9 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt ncbi-data=6.1.20120620-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt ncbi-data=6.1.20120620-8 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpvfodr32l 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpvfodr32l 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpvfodr32l/tmp/scripts/ 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpvfodr32l/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'apt-get', 'update'] 0m4.4s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Ign http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main Translation-en Hit http://deb.debian.org jessie/main amd64 Packages Reading package lists... W: GPG error: http://deb.debian.org jessie Release: The following signatures were invalid: KEYEXPIRED 1668891673 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'apt-get', 'update'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.8s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.8s INFO: Running scripts post_setup 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m6.6s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! init-system-helpers ucf E: There are problems and -y was used without --force-yes 0m6.6s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpvfodr32l', 'tmp/scripts/post_setup_jessie-fake-essential'] *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! init-system-helpers ucf E: There are problems and -y was used without --force-yes 0m6.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/shm'] 0m6.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/shm'] 0m6.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/console'] 0m6.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/console'] 0m6.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/ptmx'] 0m6.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/ptmx'] 0m6.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/pts'] 0m6.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/dev/pts'] 0m6.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/proc'] 0m6.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvfodr32l/proc'] 0m6.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvfodr32l'] 0m7.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvfodr32l'] 0m7.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpvfodr32l 0m7.0s ERROR: piuparts run ends. ret=1 End: 2022-12-24 17:08:26 GMT