Start: 2022-10-29 12:16:01 GMT Package: predictprotein Version: 1.1.06-1 Installed-Size: 213 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, blast2, bioperl, ncoils (>= 2002-3), disulfinder, hmmer (>= 3.0), hmmer2, librg-exception-perl, librg-utils-perl, ncbi-seg, make, metastudent, norsnet, norsp, predictnls, profbval, profisis, profphd, proftmb, reprof Recommends: pp-popularity-contest Suggests: pp-cache-mgr (>= 1.0.3), predictprotein-nonfree Description: suite of protein sequence analysis tools Homepage: http://www.predictprotein.org Description-md5: 15a383a129e1bde1cac5bdfc464d4e20 Section: science Priority: extra Filename: pool/main/p/predictprotein/predictprotein_1.1.06-1_all.deb Size: 58806 MD5sum: b19b00903cfdbfb7cf3e883260b5c6c3 SHA1: ac4f429431af58395492c18a689b15a6e1e2dc4e SHA256: 9274f747b9908772d0d5454d93570c0a0755af3fb698be5bb2a825c71f95d06a Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt predictprotein=1.1.06-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie --no-upgrade-test --apt predictprotein=1.1.06-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpk6m7ows4 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpk6m7ows4 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpk6m7ows4/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpk6m7ows4/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', 'update'] 0m3.0s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.5s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (3375 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_zz_backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_setup_zz_backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', 'clean'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', 'clean'] 0m4.5s DEBUG: Recording chroot state 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.9s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg-divert', '--list'] 0m4.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg-divert', '--list'] 0m4.9s INFO: Running scripts is_testable 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s INFO: apt-cache does not know about any of the requested packages 0m4.9s INFO: Running scripts pre_test 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_test_root_password'] 0m4.9s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_test_root_password'] 0m4.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 0m5.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 0m5.7s DEBUG: No broken symlinks as far as we can find. 0m5.7s INFO: Running scripts pre_install 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_database-server'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_database-server'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_exceptions'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_extras'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_extras'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 0m6.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 0m6.7s DEBUG: No broken symlinks as far as we can find. 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-cache', 'policy'] 0m8.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-cache', 'policy'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-cache', 'policy', 'predictprotein'] 0m8.2s DUMP: predictprotein: Installed: (none) Candidate: 1.1.06-1 Version table: 1.1.06-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-cache', 'policy', 'predictprotein'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', '-y', 'install', 'predictprotein=1.1.06-1'] 0m49.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bioperl blast2 ca-certificates ca-certificates-java default-jre default-jre-headless disulfinder disulfinder-data fontconfig fontconfig-config fonts-dejavu-core graphviz hmmer hmmer2 java-common libai-fann-perl libasound2 libasound2-data libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libbio-perl-perl libcairo2 libcdt5 libcgraph6 libconfig-inifiles-perl libcups2 libdata-stag-perl libdatrie1 libdbus-1-3 libdrm2 libencode-locale-perl libexpat1 libfann2 libffi6 libfile-chdir-perl libfile-listing-perl libflac8 libfontconfig1 libfreetype6 libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libgif4 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgmp10 libgnutls-deb0-28 libgo-perl libgraphite2-3 libgraphviz-perl libgsl0ldbl libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libgvc6 libgvpr2 libharfbuzz0b libhogweed2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libjasper1 libjbig0 libjpeg62-turbo libjson-c2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblist-moreutils-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libncbi6 libnet-http-perl libnet-ssleay-perl libnettle4 libnspr4 libnss3 libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparse-recdescent-perl libpathplan4 libpcsclite1 libpixman-1-0 libpng12-0 libpulse0 libpvm3 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl libsctp1 libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libtasn1-6 libthai-data libthai0 libtiff5 libtimedate-perl liburi-perl libvorbis0a libvorbisenc2 libvpx1 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpath-perl libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 make metastudent metastudent-data metastudent-data-2 mime-support ncbi-data ncbi-seg ncoils netbase norsnet norsp openjdk-7-jre openjdk-7-jre-headless openssl perl perl-modules predictnls profbval profisis profnet-bval profnet-isis profnet-norsnet profnet-prof profphd profphd-net profphd-utils proftmb python python-minimal python2.7 python2.7-minimal reprof shared-mime-info tzdata-java x11-common Suggested packages: groff-base libvibrant6b ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 gsfonts graphviz-doc hmmer-doc hmmer2-doc hmmer2-pvm equivs libasound2-plugins alsa-utils libxml-sax-expatxs-perl cups-common libfann-dev libfann-doc libgd-tools gnutls-bin gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html krb5-doc krb5-user librsvg2-common gvfs libdata-dump-perl libjasper-runtime liblcms2-utils libcrypt-ssleay-perl libmime-base64-perl pcscd pulseaudio libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools make-doc gnuplot icedtea-7-plugin icedtea-7-jre-jamvm libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic libterm-readline-gnu-perl libterm-readline-perl-perl libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl liblog-message-simple-perl liblog-message-perl libobject-accessor-perl pp-cache-mgr predictprotein-nonfree python-doc python-tk python2.7-doc binutils binfmt-support Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl libset-scalar-perl fonts-liberation biosquid libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libstorable-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libxml-libxslt-perl libmldbm-perl dbus libgl1-mesa-dri libglib2.0-data xdg-user-dirs libxml-checker-perl xsltproc hicolor-icon-theme libgtk2.0-bin libhtml-format-perl krb5-locales lksctp-tools tcpd libhtml-form-perl libhttp-daemon-perl libmailtools-perl libtie-ixhash-perl xml-core file ifupdown pp-popularity-contest fonts-dejavu-extra rename libarchive-extract-perl libmodule-pluggable-perl libpod-latex-perl libterm-ui-perl libtext-soundex-perl libcgi-pm-perl libmodule-build-perl libpackage-constants-perl The following NEW packages will be installed: bioperl blast2 ca-certificates ca-certificates-java default-jre default-jre-headless disulfinder disulfinder-data fontconfig fontconfig-config fonts-dejavu-core graphviz hmmer hmmer2 java-common libai-fann-perl libasound2 libasound2-data libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libbio-perl-perl libcairo2 libcdt5 libcgraph6 libconfig-inifiles-perl libcups2 libdata-stag-perl libdatrie1 libdbus-1-3 libdrm2 libencode-locale-perl libexpat1 libfann2 libffi6 libfile-chdir-perl libfile-listing-perl libflac8 libfontconfig1 libfreetype6 libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libgif4 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgmp10 libgnutls-deb0-28 libgo-perl libgraphite2-3 libgraphviz-perl libgsl0ldbl libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libgvc6 libgvpr2 libharfbuzz0b libhogweed2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libjasper1 libjbig0 libjpeg62-turbo libjson-c2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblist-moreutils-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libncbi6 libnet-http-perl libnet-ssleay-perl libnettle4 libnspr4 libnss3 libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparse-recdescent-perl libpathplan4 libpcsclite1 libpixman-1-0 libpng12-0 libpulse0 libpvm3 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl libsctp1 libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libtasn1-6 libthai-data libthai0 libtiff5 libtimedate-perl liburi-perl libvorbis0a libvorbisenc2 libvpx1 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpath-perl libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 make metastudent metastudent-data metastudent-data-2 mime-support ncbi-data ncbi-seg ncoils netbase norsnet norsp openjdk-7-jre openjdk-7-jre-headless openssl perl perl-modules predictnls predictprotein profbval profisis profnet-bval profnet-isis profnet-norsnet profnet-prof profphd profphd-net profphd-utils proftmb python python-minimal python2.7 python2.7-minimal reprof shared-mime-info tzdata-java x11-common 0 upgraded, 205 newly installed, 0 to remove and 0 not upgraded. Need to get 262 MB of archives. After this operation, 953 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main libjson-c2 amd64 0.11-4 [24.8 kB] Get:3 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:4 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:5 http://deb.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:6 http://deb.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:7 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:8 http://deb.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:9 http://deb.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:10 http://deb.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:11 http://deb.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:12 http://deb.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:13 http://deb.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:14 http://deb.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:15 http://deb.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:16 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:17 http://deb.debian.org/debian/ jessie/main libwrap0 amd64 7.6.q-25 [58.5 kB] Get:18 http://deb.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:19 http://deb.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:20 http://deb.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:21 http://deb.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:22 http://deb.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:23 http://deb.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:24 http://deb.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:25 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:26 http://deb.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:27 http://deb.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:28 http://deb.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:29 http://deb.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:30 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:31 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:32 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:33 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:34 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:35 http://deb.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:36 http://deb.debian.org/debian/ jessie/main libasound2-data all 1.0.28-1 [64.8 kB] Get:37 http://deb.debian.org/debian/ jessie/main libasound2 amd64 1.0.28-1 [374 kB] Get:38 http://deb.debian.org/debian/ jessie/main libasyncns0 amd64 0.8-5 [12.5 kB] Get:39 http://deb.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:40 http://deb.debian.org/debian/ jessie/main libatk1.0-data all 2.14.0-1 [181 kB] Get:41 http://deb.debian.org/debian/ jessie/main libatk1.0-0 amd64 2.14.0-1 [92.0 kB] Get:42 http://deb.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:43 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:44 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:45 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:46 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:47 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:48 http://deb.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:49 http://deb.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:50 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:51 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:52 http://deb.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:53 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:54 http://deb.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:55 http://deb.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:56 http://deb.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:57 http://deb.debian.org/debian/ jessie/main libgdk-pixbuf2.0-common all 2.31.1-2+deb8u7 [294 kB] Get:58 http://deb.debian.org/debian/ jessie/main libgdk-pixbuf2.0-0 amd64 2.31.1-2+deb8u7 [167 kB] Get:59 http://deb.debian.org/debian/ jessie/main libgtk2.0-common all 2.24.25-3+deb8u2 [3137 kB] Get:60 http://deb.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:61 http://deb.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:62 http://deb.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:63 http://deb.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:64 http://deb.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:65 http://deb.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:66 http://deb.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:67 http://deb.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:68 http://deb.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:69 http://deb.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:70 http://deb.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:71 http://deb.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:72 http://deb.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:73 http://deb.debian.org/debian/ jessie/main libxcomposite1 amd64 1:0.4.4-1 [17.4 kB] Get:74 http://deb.debian.org/debian/ jessie/main libxfixes3 amd64 1:5.0.1-2+deb8u1 [21.1 kB] Get:75 http://deb.debian.org/debian/ jessie/main libxcursor1 amd64 1:1.1.14-1+deb8u1 [35.0 kB] Get:76 http://deb.debian.org/debian/ jessie/main libxdamage1 amd64 1:1.1.4-2+b1 [14.7 kB] Get:77 http://deb.debian.org/debian/ jessie/main libxi6 amd64 2:1.7.4-1+deb8u1 [79.9 kB] Get:78 http://deb.debian.org/debian/ jessie/main libxinerama1 amd64 2:1.1.3-1+b1 [16.9 kB] Get:79 http://deb.debian.org/debian/ jessie/main libxrandr2 amd64 2:1.4.2-1+deb8u1 [35.5 kB] Get:80 http://deb.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:81 http://deb.debian.org/debian/ jessie/main libgtk2.0-0 amd64 2.24.25-3+deb8u2 [2302 kB] Get:82 http://deb.debian.org/debian/ jessie/main libatk-wrapper-java all 0.30.5-1 [30.3 kB] Get:83 http://deb.debian.org/debian/ jessie/main libatk-wrapper-java-jni amd64 0.30.5-1 [24.8 kB] Get:84 http://deb.debian.org/debian/ jessie/main libdrm2 amd64 2.4.58-2 [29.9 kB] Get:85 http://deb.debian.org/debian/ jessie/main libfann2 amd64 2.1.0~beta+dfsg-1 [67.2 kB] Get:86 http://deb.debian.org/debian/ jessie/main libogg0 amd64 1.3.2-1 [19.9 kB] Get:87 http://deb.debian.org/debian/ jessie/main libflac8 amd64 1.3.0-3 [89.3 kB] Get:88 http://deb.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:89 http://deb.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:90 http://deb.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:91 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:92 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:93 http://deb.debian.org/debian/ jessie/main libgif4 amd64 4.1.6-11+deb8u1 [40.0 kB] Get:94 http://deb.debian.org/debian/ jessie/main libglapi-mesa amd64 10.3.2-1+deb8u1 [53.3 kB] Get:95 http://deb.debian.org/debian/ jessie/main libx11-xcb1 amd64 2:1.6.2-3+deb8u1 [163 kB] Get:96 http://deb.debian.org/debian/ jessie/main libxcb-dri2-0 amd64 1.10-3+b1 [12.9 kB] Get:97 http://deb.debian.org/debian/ jessie/main libxcb-dri3-0 amd64 1.10-3+b1 [11.1 kB] Get:98 http://deb.debian.org/debian/ jessie/main libxcb-glx0 amd64 1.10-3+b1 [27.4 kB] Get:99 http://deb.debian.org/debian/ jessie/main libxcb-present0 amd64 1.10-3+b1 [11.1 kB] Get:100 http://deb.debian.org/debian/ jessie/main libxcb-sync1 amd64 1.10-3+b1 [14.4 kB] Get:101 http://deb.debian.org/debian/ jessie/main libxshmfence1 amd64 1.1-4 [6736 B] Get:102 http://deb.debian.org/debian/ jessie/main libxxf86vm1 amd64 1:1.1.3-1+b1 [19.6 kB] Get:103 http://deb.debian.org/debian/ jessie/main libgl1-mesa-glx amd64 10.3.2-1+deb8u1 [180 kB] Get:104 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:105 http://deb.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:106 http://deb.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:107 http://deb.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:108 http://deb.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:109 http://deb.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:110 http://deb.debian.org/debian/ jessie/main libnspr4 amd64 2:4.12-1+debu8u1 [117 kB] Get:111 http://deb.debian.org/debian/ jessie/main libnss3 amd64 2:3.26-1+debu8u3 [1159 kB] Get:112 http://deb.debian.org/debian/ jessie/main libpcsclite1 amd64 1.8.13-1+deb8u1 [56.2 kB] Get:113 http://deb.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:114 http://deb.debian.org/debian/ jessie/main libvorbis0a amd64 1.3.4-2+deb8u1 [92.5 kB] Get:115 http://deb.debian.org/debian/ jessie/main libvorbisenc2 amd64 1.3.4-2+deb8u1 [77.8 kB] Get:116 http://deb.debian.org/debian/ jessie/main libsndfile1 amd64 1.0.25-9.1+deb8u1 [215 kB] Get:117 http://deb.debian.org/debian/ jessie/main libxtst6 amd64 2:1.2.2-1+deb8u1 [27.2 kB] Get:118 http://deb.debian.org/debian/ jessie/main libpulse0 amd64 5.0-13 [255 kB] Get:119 http://deb.debian.org/debian/ jessie/main libsctp1 amd64 1.0.16+dfsg-2 [27.6 kB] Get:120 http://deb.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:121 http://deb.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:122 http://deb.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:123 http://deb.debian.org/debian/ jessie/main metastudent-data all 1.0.1-2 [138 MB] Get:124 http://deb.debian.org/debian/ jessie/main metastudent-data-2 all 1.0.0-1 [227 kB] Get:125 http://deb.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:126 http://deb.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:127 http://deb.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:128 http://deb.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:129 http://deb.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:130 http://deb.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:131 http://deb.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:132 http://deb.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:133 http://deb.debian.org/debian/ jessie/main tzdata-java all 2018e-0+deb8u1 [82.8 kB] Get:134 http://deb.debian.org/debian/ jessie/main java-common all 0.52 [136 kB] Get:135 http://deb.debian.org/debian/ jessie/main openjdk-7-jre-headless amd64 7u181-2.6.14-1~deb8u1 [39.9 MB] Get:136 http://deb.debian.org/debian/ jessie/main default-jre-headless amd64 2:1.7-52 [9072 B] Get:137 http://deb.debian.org/debian/ jessie/main ca-certificates-java all 20140324 [13.7 kB] Get:138 http://deb.debian.org/debian/ jessie/main openjdk-7-jre amd64 7u181-2.6.14-1~deb8u1 [176 kB] Get:139 http://deb.debian.org/debian/ jessie/main default-jre amd64 2:1.7-52 [968 B] Get:140 http://deb.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:141 http://deb.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:142 http://deb.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:143 http://deb.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:144 http://deb.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:145 http://deb.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:146 http://deb.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:147 http://deb.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:148 http://deb.debian.org/debian/ jessie/main libpvm3 amd64 3.4.5-12.6 [87.0 kB] Get:149 http://deb.debian.org/debian/ jessie/main hmmer2 amd64 2.3.2-8 [294 kB] Get:150 http://deb.debian.org/debian/ jessie/main libai-fann-perl amd64 0.10-2+b1 [29.4 kB] Get:151 http://deb.debian.org/debian/ jessie/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:152 http://deb.debian.org/debian/ jessie/main libfile-chdir-perl all 0.1008-1 [13.3 kB] Get:153 http://deb.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:154 http://deb.debian.org/debian/ jessie/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:155 http://deb.debian.org/debian/ jessie/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:156 http://deb.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:157 http://deb.debian.org/debian/ jessie/main libipc-run-perl all 0.92-1+deb8u1 [101 kB] Get:158 http://deb.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:159 http://deb.debian.org/debian/ jessie/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:160 http://deb.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:161 http://deb.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:162 http://deb.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:163 http://deb.debian.org/debian/ jessie/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:164 http://deb.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:165 http://deb.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:166 http://deb.debian.org/debian/ jessie/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:167 http://deb.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:168 http://deb.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:169 http://deb.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:170 http://deb.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:171 http://deb.debian.org/debian/ jessie/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:172 http://deb.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:173 http://deb.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:174 http://deb.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:175 http://deb.debian.org/debian/ jessie/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:176 http://deb.debian.org/debian/ jessie/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:177 http://deb.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:178 http://deb.debian.org/debian/ jessie/main libgo-perl all 0.15-1 [311 kB] Get:179 http://deb.debian.org/debian/ jessie/main libgsl0ldbl amd64 1.16+dfsg-2 [819 kB] Get:180 http://deb.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:181 http://deb.debian.org/debian/ jessie/main make amd64 4.0-8.1 [349 kB] Get:182 http://deb.debian.org/debian/ jessie/main metastudent all 1.0.11-2 [5946 kB] Get:183 http://deb.debian.org/debian/ jessie/main ncoils amd64 2002-4 [21.0 kB] Get:184 http://deb.debian.org/debian/ jessie/main disulfinder-data all 1.2.11-4 [1131 kB] Get:185 http://deb.debian.org/debian/ jessie/main disulfinder amd64 1.2.11-4 [237 kB] Get:186 http://deb.debian.org/debian/ jessie/main libconfig-inifiles-perl all 2.83-3 [54.0 kB] Get:187 http://deb.debian.org/debian/ jessie/main librg-exception-perl all 1.0.3-1 [3104 B] Get:188 http://deb.debian.org/debian/ jessie/main librg-reprof-bundle-perl all 1.0.1-1 [8962 kB] Get:189 http://deb.debian.org/debian/ jessie/main profphd-utils amd64 1.0.10-1 [413 kB] Get:190 http://deb.debian.org/debian/ jessie/main librg-utils-perl all 1.0.43-2 [111 kB] Get:191 http://deb.debian.org/debian/ jessie/main ncbi-seg amd64 0.0.20000620-2 [78.2 kB] Get:192 http://deb.debian.org/debian/ jessie/main profnet-norsnet amd64 1.0.22-2 [39.1 kB] Get:193 http://deb.debian.org/debian/ jessie/main norsnet all 1.0.17-1 [44.4 kB] Get:194 http://deb.debian.org/debian/ jessie/main norsp all 1.0.6-1 [283 kB] Get:195 http://deb.debian.org/debian/ jessie/main predictnls all 1.0.20-1 [2146 kB] Get:196 http://deb.debian.org/debian/ jessie/main profnet-bval amd64 1.0.22-2 [39.9 kB] Get:197 http://deb.debian.org/debian/ jessie/main profbval all 1.0.22-1 [73.1 kB] Get:198 http://deb.debian.org/debian/ jessie/main profnet-isis amd64 1.0.22-2 [39.0 kB] Get:199 http://deb.debian.org/debian/ jessie/main profisis all 1.0.11-1 [76.2 kB] Get:200 http://deb.debian.org/debian/ jessie/main profnet-prof amd64 1.0.22-2 [38.9 kB] Get:201 http://deb.debian.org/debian/ jessie/main profphd-net amd64 1.0.22-2 [123 kB] Get:202 http://deb.debian.org/debian/ jessie/main profphd all 1.0.40-1 [4538 kB] Get:203 http://deb.debian.org/debian/ jessie/main proftmb amd64 1.1.12-2 [396 kB] Get:204 http://deb.debian.org/debian/ jessie/main reprof all 1.0.1-1 [18.6 kB] Get:205 http://deb.debian.org/debian/ jessie/main predictprotein all 1.1.06-1 [58.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 262 MB in 6s (43.0 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-13.1) ... Selecting previously unselected package libjson-c2:amd64. Preparing to unpack .../libjson-c2_0.11-4_amd64.deb ... Unpacking libjson-c2:amd64 (0.11-4) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libnettle4:amd64. Preparing to unpack .../libnettle4_2.7.1-5+deb8u2_amd64.deb ... Unpacking libnettle4:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libhogweed2:amd64. Preparing to unpack .../libhogweed2_2.7.1-5+deb8u2_amd64.deb ... Unpacking libhogweed2:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+deb8u1_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+deb8u1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.20.7-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.20.7-1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.2-3+deb8u3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.2-3+deb8u3) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.8-6+deb8u7_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-5+b1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-5+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... 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Unpacking perl (5.20.2-3+deb8u11) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../libpython2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7-minimal (2.7.9-2+deb8u1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.9-1_amd64.deb ... Unpacking python-minimal (2.7.9-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.58_all.deb ... Unpacking mime-support (3.58) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../libpython2.7-stdlib_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7 (2.7.9-2+deb8u1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../libpython-stdlib_2.7.9-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.9-1) ... Setting up libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7-minimal (2.7.9-2+deb8u1) ... Setting up python-minimal (2.7.9-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9626 files and directories currently installed.) Preparing to unpack .../python_2.7.9-1_amd64.deb ... Unpacking python (2.7.9-1) ... Selecting previously unselected package libpng12-0:amd64. Preparing to unpack .../libpng12-0_1.2.50-2+deb8u3_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.50-2+deb8u3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.5.2-3+deb8u2_amd64.deb ... 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Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libwrap0:amd64 (7.6.q-25) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up perl (5.20.2-3+deb8u11) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up mime-support (3.58) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up libasound2-data (1.0.28-1) ... Setting up libasound2:amd64 (1.0.28-1) ... Setting up libasyncns0:amd64 (0.8-5) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libatk1.0-data (2.14.0-1) ... Setting up libatk1.0-0:amd64 (2.14.0-1) ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up libgdk-pixbuf2.0-common (2.31.1-2+deb8u7) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Setting up libgtk2.0-common (2.24.25-3+deb8u2) ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libcups2:amd64 (1.7.5-11+deb8u2) ... Setting up libthai-data (0.1.21-1) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libxcomposite1:amd64 (1:0.4.4-1) ... Setting up libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Setting up libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b1) ... Setting up libxi6:amd64 (2:1.7.4-1+deb8u1) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b1) ... Setting up libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Setting up shared-mime-info (1.3-1) ... Setting up libgtk2.0-0:amd64 (2.24.25-3+deb8u2) ... Setting up libatk-wrapper-java (0.30.5-1) ... Setting up libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Setting up libdrm2:amd64 (2.4.58-2) ... Setting up libfann2:amd64 (2.1.0~beta+dfsg-1) ... Setting up libogg0:amd64 (1.3.2-1) ... Setting up libflac8:amd64 (1.3.0-3) ... Setting up libvpx1:amd64 (1.3.0-3+deb8u1) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up libgd3:amd64 (2.1.0-5+deb8u11) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libgif4:amd64 (4.1.6-11+deb8u1) ... Setting up libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Setting up libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-dri2-0:amd64 (1.10-3+b1) ... Setting up libxcb-dri3-0:amd64 (1.10-3+b1) ... Setting up libxcb-glx0:amd64 (1.10-3+b1) ... Setting up libxcb-present0:amd64 (1.10-3+b1) ... Setting up libxcb-sync1:amd64 (1.10-3+b1) ... Setting up libxshmfence1:amd64 (1.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Setting up libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up libnspr4:amd64 (2:4.12-1+debu8u1) ... Setting up libnss3:amd64 (2:3.26-1+debu8u3) ... Setting up libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libvorbis0a:amd64 (1.3.4-2+deb8u1) ... Setting up libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Setting up libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Setting up libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Setting up libpulse0:amd64 (5.0-13) ... Setting up libsctp1:amd64 (1.0.16+dfsg-2) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up metastudent-data (1.0.1-2) ... Setting up metastudent-data-2 (1.0.0-1) ... Setting up netbase (5.3) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done. Setting up tzdata-java (2018e-0+deb8u1) ... Setting up java-common (0.52) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up graphviz (2.38.0-7) ... Setting up hmmer (3.1b1-3) ... Setting up libpvm3 (3.4.5-12.6) ... Setting up hmmer2 (2.3.2-8) ... Setting up libai-fann-perl (0.10-2+b1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libfile-chdir-perl (0.1008-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-run-perl (0.92-1+deb8u1) ... Setting up liburi-perl (1.64-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libgsl0ldbl (1.16+dfsg-2) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up make (4.0-8.1) ... Setting up ncoils (2002-4) ... Setting up disulfinder-data (1.2.11-4) ... Setting up disulfinder (1.2.11-4) ... Setting up libconfig-inifiles-perl (2.83-3) ... Setting up librg-exception-perl (1.0.3-1) ... Setting up librg-reprof-bundle-perl (1.0.1-1) ... Setting up profphd-utils (1.0.10-1) ... Setting up librg-utils-perl (1.0.43-2) ... Setting up ncbi-seg (0.0.20000620-2) ... Setting up profnet-norsnet (1.0.22-2) ... Setting up norsnet (1.0.17-1) ... Setting up norsp (1.0.6-1) ... Setting up predictnls (1.0.20-1) ... Setting up profnet-bval (1.0.22-2) ... Setting up profbval (1.0.22-1) ... Setting up profnet-isis (1.0.22-2) ... Setting up profisis (1.0.11-1) ... Setting up profnet-prof (1.0.22-2) ... Setting up profphd-net (1.0.22-2) ... Setting up profphd (1.0.40-1) ... Setting up proftmb (1.1.12-2) ... Setting up reprof (1.0.1-1) ... Setting up openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up default-jre-headless (2:1.7-52) ... Setting up openjdk-7-jre:amd64 (7u181-2.6.14-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (2:1.7-52) ... Setting up libwww-perl (6.08-1) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libgo-perl (0.15-1) ... Setting up metastudent (1.0.11-2) ... Setting up predictprotein (1.1.06-1) ... Setting up ca-certificates-java (20140324) ... Adding debian:spi-cacert-2008.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:WoSign_China.pem Adding debian:WoSign.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H6.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:StartCom_Certification_Authority_2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:S-TRUST_Universal_Root_CA.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:PSCProcert.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:Juur-SK.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:IGC_A.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:ComSign_CA.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Certigna.pem Adding debian:Certification_Authority_of_WoSign_G2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CNNIC_ROOT.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_WoSign_ECC_Root.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AddTrust_External_Root.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:ACEDICOM_Root.pem Adding debian:ACCVRAIZ1.pem done. Setting up liblwp-protocol-https-perl (6.06-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d.... done. done. 0m49.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', '-y', 'install', 'predictprotein=1.1.06-1'] 0m49.0s INFO: Running scripts post_install 0m49.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_install_exceptions'] 0m49.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_install_exceptions'] 0m49.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 0m49.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 0m51.3s DEBUG: No broken symlinks as far as we can find. 0m52.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', '-ac', '--ignore-obsolete'] 0m55.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', '-ac', '--ignore-obsolete'] 0m55.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.0s DUMP: 0.15.6 0m55.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.0s INFO: Running adequate version 0.15.6 now. 0m55.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'predictprotein'] 0m55.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'predictprotein'] 0m55.1s INFO: Running scripts pre_remove 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m58.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m58.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_exceptions'] 0m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/pre_remove_exceptions'] 0m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m58.8s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bioperl bioperl 1.6.924-1 install ok installed blast2 blast2 1:2.2.26.20120620-8 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed ca-certificates-java ca-certificates-java 20140324 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed default-jre default-jre 2:1.7-52 install ok installed default-jre-headless default-jre-headless 2:1.7-52 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed disulfinder disulfinder 1.2.11-4 install ok installed disulfinder-data disulfinder-data 1.2.11-4 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed graphviz graphviz 2.38.0-7 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hmmer hmmer 3.1b1-3 install ok installed hmmer2 hmmer2 2.3.2-8 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed java-common java-common 0.52 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libai-fann-perl libai-fann-perl 0.10-2+b1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libasound2:amd64 libasound2 1.0.28-1 install ok installed libasound2-data libasound2-data 1.0.28-1 install ok installed libasyncns0:amd64 libasyncns0 0.8-5 install ok installed libatk-wrapper-java libatk-wrapper-java 0.30.5-1 install ok installed libatk-wrapper-java-jni:amd64 libatk-wrapper-java-jni 0.30.5-1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.14.0-1 install ok installed libatk1.0-data libatk1.0-data 2.14.0-1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.31-5 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.31-5 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.31-5 install ok installed libbio-perl-perl libbio-perl-perl 1.6.924-1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcairo2:amd64 libcairo2 1.14.0-2.1+deb8u2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcdt5 libcdt5 2.38.0-7 install ok installed libcgraph6 libcgraph6 2.38.0-7 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libconfig-inifiles-perl libconfig-inifiles-perl 2.83-3 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libcups2:amd64 libcups2 1.7.5-11+deb8u2 install ok installed libdata-stag-perl libdata-stag-perl 0.13-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.8.22-0+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdrm2:amd64 libdrm2 2.4.58-2 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libfann2:amd64 libfann2 2.1.0~beta+dfsg-1 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfile-chdir-perl libfile-chdir-perl 0.1008-1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libflac8:amd64 libflac8 1.3.0-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u2 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgd3:amd64 libgd3 2.1.0-5+deb8u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgdk-pixbuf2.0-0:amd64 libgdk-pixbuf2.0-0 2.31.1-2+deb8u7 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.31.1-2+deb8u7 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u1 install ok installed libgif4:amd64 libgif4 4.1.6-11+deb8u1 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 10.3.2-1+deb8u1 install ok installed libglapi-mesa:amd64 libglapi-mesa 10.3.2-1+deb8u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.42.1-1+b1 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgo-perl libgo-perl 0.15-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1~deb8u1 install ok installed libgraphviz-perl libgraphviz-perl 2.16-1 install ok installed libgsl0ldbl libgsl0ldbl 1.16+dfsg-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u4 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.25-3+deb8u2 install ok installed libgtk2.0-common libgtk2.0-common 2.24.25-3+deb8u2 install ok installed libgvc6 libgvc6 2.38.0-7 install ok installed libgvpr2 libgvpr2 2.38.0-7 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 0.9.35-2 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libice6:amd64 libice6 2:1.0.9-1+b1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1+b4 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libipc-run-perl libipc-run-perl 0.92-1+deb8u1 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12 install ok installed libjson-c2:amd64 libjson-c2 0.11-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u4 install ok installed liblcms2-2:amd64 liblcms2-2 2.6-3+deb8u1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.33-2+b1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.11+b1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncbi6:amd64 libncbi6 6.1.20120620-8 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnspr4:amd64 libnspr4 2:4.12-1+debu8u1 install ok installed libnss3:amd64 libnss3 2:3.26-1+debu8u3 install ok installed libogg0:amd64 libogg0 1.3.2-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967009+dfsg-1 install ok installed libpathplan4 libpathplan4 2.38.0-7 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.13-1+deb8u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libpulse0:amd64 libpulse0 5.0-13 install ok installed libpvm3 libpvm3 3.4.5-12.6 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed librg-exception-perl librg-exception-perl 1.0.3-1 install ok installed librg-reprof-bundle-perl librg-reprof-bundle-perl 1.0.1-1 install ok installed librg-utils-perl librg-utils-perl 1.0.43-2 install ok installed libsctp1:amd64 libsctp1 1.0.16+dfsg-2 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsndfile1:amd64 libsndfile1 1.0.25-9.1+deb8u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libvorbis0a:amd64 libvorbis0a 1.3.4-2+deb8u1 install ok installed libvorbisenc2:amd64 libvorbisenc2 1.3.4-2+deb8u1 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u1 install ok installed libwrap0:amd64 libwrap0 7.6.q-25 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u1 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.2-3+deb8u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.12-2+b1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.10-3+b1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.10-3+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.10-3+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.10-3+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.14-1+deb8u1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+b1 install ok installed libxdot4 libxdot4 2.38.0-7 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.1-2+deb8u1 install ok installed libxi6:amd64 libxi6 2:1.7.4-1+deb8u1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.3-1+b1 install ok installed libxml-parser-perl libxml-parser-perl 2.41-3 install ok installed libxml-twig-perl libxml-twig-perl 1:3.48-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.13-7 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u6 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed libxrandr2:amd64 libxrandr2 2:1.4.2-1+deb8u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxshmfence1:amd64 libxshmfence1 1.1-4 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed libxtst6:amd64 libxtst6 2:1.2.2-1+deb8u1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.3-1+b1 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed make make 4.0-8.1 install ok installed mawk mawk 1.3.3-17 install ok installed metastudent metastudent 1.0.11-2 install ok installed metastudent-data metastudent-data 1.0.1-2 install ok installed metastudent-data-2 metastudent-data-2 1.0.0-1 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncbi-data ncbi-data 6.1.20120620-8 install ok installed ncbi-seg ncbi-seg 0.0.20000620-2 install ok installed ncoils ncoils 2002-4 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed norsnet norsnet 1.0.17-1 install ok installed norsp norsp 1.0.6-1 install ok installed openjdk-7-jre:amd64 openjdk-7-jre 7u181-2.6.14-1~deb8u1 install ok installed openjdk-7-jre-headless:amd64 openjdk-7-jre-headless 7u181-2.6.14-1~deb8u1 install ok installed openssl openssl 1.0.1t-1+deb8u8 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl perl 5.20.2-3+deb8u11 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed predictnls predictnls 1.0.20-1 install ok installed predictprotein predictprotein 1.1.06-1 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed profbval profbval 1.0.22-1 install ok installed profisis profisis 1.0.11-1 install ok installed profnet-bval profnet-bval 1.0.22-2 install ok installed profnet-isis profnet-isis 1.0.22-2 install ok installed profnet-norsnet profnet-norsnet 1.0.22-2 install ok installed profnet-prof profnet-prof 1.0.22-2 install ok installed profphd profphd 1.0.40-1 install ok installed profphd-net profphd-net 1.0.22-2 install ok installed profphd-utils profphd-utils 1.0.10-1 install ok installed proftmb proftmb 1.1.12-2 install ok installed python python 2.7.9-1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python2.7 python2.7 2.7.9-2+deb8u1 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed reprof reprof 1.0.1-1 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed shared-mime-info shared-mime-info 1.3-1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed tzdata-java tzdata-java 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed x11-common x11-common 1:7.7+7 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', 'remove', 'bioperl', 'blast2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'disulfinder', 'disulfinder-data', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'graphviz', 'hmmer', 'hmmer2', 'java-common', 'libai-fann-perl', 'libasound2:amd64', 'libasound2-data', 'libasyncns0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbio-perl-perl', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libconfig-inifiles-perl', 'libcups2:amd64', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdrm2:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfann2:amd64', 'libffi6:amd64', 'libfile-chdir-perl', 'libfile-listing-perl', 'libflac8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran3:amd64', 'libgif4:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgo-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgsl0ldbl', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libio-html-perl', 'libio-pty-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-run-perl', 'libjasper1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblist-moreutils-perl', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libogg0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparse-recdescent-perl', 'libpathplan4', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpulse0:amd64', 'libpvm3', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'libsctp1:amd64', 'libsm6:amd64', 'libsndfile1:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libvpx1:amd64', 'libwrap0:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpath-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'make', 'metastudent', 'metastudent-data', 'metastudent-data-2', 'mime-support', 'ncbi-data', 'ncbi-seg', 'ncoils', 'netbase', 'norsnet', 'norsp', 'openjdk-7-jre:amd64', 'openjdk-7-jre-headless:amd64', 'openssl', 'perl', 'perl-modules', 'predictnls', 'profbval', 'profisis', 'profnet-bval', 'profnet-isis', 'profnet-norsnet', 'profnet-prof', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'reprof', 'shared-mime-info', 'tzdata-java', 'x11-common', 'predictprotein'] 1m1.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bioperl blast2 ca-certificates ca-certificates-java default-jre default-jre-headless disulfinder disulfinder-data fontconfig fontconfig-config fonts-dejavu-core graphviz hmmer hmmer2 java-common libai-fann-perl libasound2 libasound2-data libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libbio-perl-perl libcairo2 libcdt5 libcgraph6 libconfig-inifiles-perl libcups2 libdata-stag-perl libdatrie1 libdbus-1-3 libdrm2 libencode-locale-perl libexpat1 libfann2 libffi6 libfile-chdir-perl libfile-listing-perl libflac8 libfontconfig1 libfreetype6 libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libgif4 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgmp10 libgnutls-deb0-28 libgo-perl libgraphite2-3 libgraphviz-perl libgsl0ldbl libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libgvc6 libgvpr2 libharfbuzz0b libhogweed2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libjasper1 libjbig0 libjpeg62-turbo libjson-c2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblist-moreutils-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libncbi6 libnet-http-perl libnet-ssleay-perl libnettle4 libnspr4 libnss3 libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparse-recdescent-perl libpathplan4 libpcsclite1 libpixman-1-0 libpng12-0 libpulse0 libpvm3 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl libsctp1 libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libtasn1-6 libthai-data libthai0 libtiff5 libtimedate-perl liburi-perl libvorbis0a libvorbisenc2 libvpx1 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpath-perl libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 make metastudent metastudent-data metastudent-data-2 mime-support ncbi-data ncbi-seg ncoils netbase norsnet norsp openjdk-7-jre openjdk-7-jre-headless openssl perl perl-modules predictnls predictprotein profbval profisis profnet-bval profnet-isis profnet-norsnet profnet-prof profphd profphd-net profphd-utils proftmb python python-minimal python2.7 python2.7-minimal reprof shared-mime-info tzdata-java x11-common 0 upgraded, 0 newly installed, 205 to remove and 0 not upgraded. After this operation, 953 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17814 files and directories currently installed.) Removing predictprotein (1.1.06-1) ... Removing bioperl (1.6.924-1) ... Removing metastudent (1.0.11-2) ... Removing blast2 (1:2.2.26.20120620-8) ... Removing libgo-perl (0.15-1) ... Removing libgraphviz-perl (2.16-1) ... Removing libxml-xpath-perl (1.13-7) ... Removing libxml-twig-perl (1:3.48-1) ... Removing libxml-parser-perl (2.41-3) ... Removing default-jre (2:1.7-52) ... Removing openjdk-7-jre:amd64 (7u181-2.6.14-1~deb8u1) ... Removing default-jre-headless (2:1.7-52) ... Removing disulfinder (1.2.11-4) ... Removing disulfinder-data (1.2.11-4) ... Removing libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Removing libgtk2.0-0:amd64 (2.24.25-3+deb8u2) ... Removing graphviz (2.38.0-7) ... Removing libgvc6 (2.38.0-7) ... Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Removing hmmer (3.1b1-3) ... Removing hmmer2 (2.3.2-8) ... Removing reprof (1.0.1-1) ... Removing librg-reprof-bundle-perl (1.0.1-1) ... Removing libai-fann-perl (0.10-2+b1) ... Removing libasound2:amd64 (1.0.28-1) ... Removing libasound2-data (1.0.28-1) ... Removing libatk-wrapper-java (0.30.5-1) ... Removing libatk1.0-0:amd64 (2.14.0-1) ... Removing libatk1.0-data (2.14.0-1) ... Removing libbio-perl-perl (1.6.924-1) ... Removing libgvpr2 (2.38.0-7) ... Removing libcgraph6 (2.38.0-7) ... Removing libcdt5 (2.38.0-7) ... Removing profisis (1.0.11-1) ... Removing libconfig-inifiles-perl (2.83-3) ... Removing libdata-stag-perl (0.13-1) ... Removing libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Removing libdrm2:amd64 (2.4.58-2) ... Removing python (2.7.9-1) ... Removing python2.7 (2.7.9-2+deb8u1) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Removing libfann2:amd64 (2.1.0~beta+dfsg-1) ... Removing shared-mime-info (1.3-1) ... Removing libfile-chdir-perl (0.1008-1) ... Removing profphd (1.0.40-1) ... Removing profbval (1.0.22-1) ... Removing libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Removing libgdk-pixbuf2.0-common (2.31.1-2+deb8u7) ... Removing librg-utils-perl (1.0.43-2) ... Removing profphd-utils (1.0.10-1) ... Removing profphd-net (1.0.22-2) ... Removing libgif4:amd64 (4.1.6-11+deb8u1) ... Removing libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Removing proftmb (1.1.12-2) ... Removing libgsl0ldbl (1.16+dfsg-2) ... Removing libgtk2.0-common (2.24.25-3+deb8u2) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libipc-run-perl (0.92-1+deb8u1) ... Removing libio-pty-perl (1:1.08-1+b4) ... Removing libio-string-perl (1.08-3) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing liblist-moreutils-perl (0.33-2+b1) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Removing libparse-recdescent-perl (1.967009+dfsg-1) ... Removing libpathplan4 (2.38.0-7) ... Removing libpvm3 (3.4.5-12.6) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Removing profnet-prof (1.0.22-2) ... Removing librg-exception-perl (1.0.3-1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Removing libxcb-sync1:amd64 (1.10-3+b1) ... Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Removing libxcb-dri3-0:amd64 (1.10-3+b1) ... Removing libxcb-glx0:amd64 (1.10-3+b1) ... Removing libxcb-present0:amd64 (1.10-3+b1) ... Removing libxcomposite1:amd64 (1:0.4.4-1) ... Removing libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b1) ... Removing libxdot4 (2.38.0-7) ... Removing libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libxinerama1:amd64 (2:1.1.3-1+b1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxshmfence1:amd64 (1.1-4) ... Removing make (4.0-8.1) ... Removing metastudent-data (1.0.1-2) ... Removing metastudent-data-2 (1.0.0-1) ... Removing mime-support (3.58) ... Removing ncbi-data (6.1.20120620-8) ... Removing ncbi-seg (0.0.20000620-2) ... Removing ncoils (2002-4) ... Removing norsnet (1.0.17-1) ... Removing norsp (1.0.6-1) ... Removing predictnls (1.0.20-1) ... Removing profnet-bval (1.0.22-2) ... Removing profnet-isis (1.0.22-2) ... Removing profnet-norsnet (1.0.22-2) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libpixman-1-0:amd64 (0.32.6-3) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Removing libthai-data (0.1.21-1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libwww-perl (6.08-1) ... Removing ca-certificates-java (20140324) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.00-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libnet-http-perl (6.07-1) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing openssl (1.0.1t-1+deb8u8) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libtimedate-perl (2.3000-2) ... Removing libwww-robotrules-perl (6.01-1) ... Removing liburi-perl (1.64-1) ... Removing netbase (5.3) ... Removing openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Removing java-common (0.52) ... Removing libpulse0:amd64 (5.0-13) ... Removing libasyncns0:amd64 (0.8-5) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Removing libavahi-client3:amd64 (0.6.31-5) ... Removing libavahi-common3:amd64 (0.6.31-5) ... Removing libavahi-common-data:amd64 (0.6.31-5) ... Removing libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Removing libflac8:amd64 (1.3.0-3) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing perl (5.20.2-3+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libice6:amd64 (2:1.0.9-1+b1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing libjson-c2:amd64 (0.11-4) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing liblcms2-2:amd64 (2.6-3+deb8u1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libnss3:amd64 (2:3.26-1+debu8u3) ... Removing libnspr4:amd64 (2:4.12-1+debu8u1) ... Removing libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Removing libvorbis0a:amd64 (1.3.4-2+deb8u1) ... Removing libogg0:amd64 (1.3.2-1) ... Removing libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libsctp1:amd64 (1.0.16+dfsg-2) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libwrap0:amd64 (7.6.q-25) ... Removing libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Removing libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Removing tzdata-java (2018e-0+deb8u1) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing libxext6:amd64 (2:1.3.3-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libx11-data (2:1.6.2-3+deb8u1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', 'remove', 'bioperl', 'blast2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'disulfinder', 'disulfinder-data', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'graphviz', 'hmmer', 'hmmer2', 'java-common', 'libai-fann-perl', 'libasound2:amd64', 'libasound2-data', 'libasyncns0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbio-perl-perl', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libconfig-inifiles-perl', 'libcups2:amd64', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdrm2:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfann2:amd64', 'libffi6:amd64', 'libfile-chdir-perl', 'libfile-listing-perl', 'libflac8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran3:amd64', 'libgif4:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgo-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgsl0ldbl', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libio-html-perl', 'libio-pty-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-run-perl', 'libjasper1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblist-moreutils-perl', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libogg0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparse-recdescent-perl', 'libpathplan4', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpulse0:amd64', 'libpvm3', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'libsctp1:amd64', 'libsm6:amd64', 'libsndfile1:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libvpx1:amd64', 'libwrap0:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpath-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'make', 'metastudent', 'metastudent-data', 'metastudent-data-2', 'mime-support', 'ncbi-data', 'ncbi-seg', 'ncoils', 'netbase', 'norsnet', 'norsp', 'openjdk-7-jre:amd64', 'openjdk-7-jre-headless:amd64', 'openssl', 'perl', 'perl-modules', 'predictnls', 'profbval', 'profisis', 'profnet-bval', 'profnet-isis', 'profnet-norsnet', 'profnet-prof', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'reprof', 'shared-mime-info', 'tzdata-java', 'x11-common', 'predictprotein'] 1m1.7s INFO: Running scripts post_remove 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_remove_exceptions'] 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_remove_exceptions'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg', '--purge', 'bioperl', 'blast2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'disulfinder', 'disulfinder-data', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'graphviz', 'hmmer', 'hmmer2', 'java-common', 'libai-fann-perl', 'libasound2:amd64', 'libasound2-data', 'libasyncns0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbio-perl-perl', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libconfig-inifiles-perl', 'libcups2:amd64', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdrm2:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfann2:amd64', 'libffi6:amd64', 'libfile-chdir-perl', 'libfile-listing-perl', 'libflac8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran3:amd64', 'libgif4:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgo-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgsl0ldbl', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libio-html-perl', 'libio-pty-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-run-perl', 'libjasper1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblist-moreutils-perl', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libogg0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparse-recdescent-perl', 'libpathplan4', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpulse0:amd64', 'libpvm3', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'libsctp1:amd64', 'libsm6:amd64', 'libsndfile1:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libvpx1:amd64', 'libwrap0:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpath-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'make', 'metastudent', 'metastudent-data', 'metastudent-data-2', 'mime-support', 'ncbi-data', 'ncbi-seg', 'ncoils', 'netbase', 'norsnet', 'norsp', 'openjdk-7-jre:amd64', 'openjdk-7-jre-headless:amd64', 'openssl', 'perl', 'perl-modules', 'predictnls', 'profbval', 'profisis', 'profnet-bval', 'profnet-isis', 'profnet-norsnet', 'profnet-prof', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'reprof', 'shared-mime-info', 'tzdata-java', 'x11-common'] 1m2.8s DUMP: dpkg: warning: ignoring request to remove bioperl which isn't installed (Reading database ... 7572 files and directories currently installed.) Removing blast2 (1:2.2.26.20120620-8) ... Purging configuration files for blast2 (1:2.2.26.20120620-8) ... Removing ca-certificates (20141019+deb8u3) ... Purging configuration files for ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing ca-certificates-java (20140324) ... Purging configuration files for ca-certificates-java (20140324) ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove disulfinder which isn't installed dpkg: warning: ignoring request to remove disulfinder-data which isn't installed Removing fontconfig (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... Removing graphviz (2.38.0-7) ... Purging configuration files for graphviz (2.38.0-7) ... dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove hmmer2 which isn't installed Removing java-common (0.52) ... Purging configuration files for java-common (0.52) ... dpkg: warning: ignoring request to remove libai-fann-perl which isn't installed Removing libasound2:amd64 (1.0.28-1) ... Purging configuration files for libasound2:amd64 (1.0.28-1) ... dpkg: warning: ignoring request to remove libasound2-data which isn't installed Removing libasyncns0:amd64 (0.8-5) ... Purging configuration files for libasyncns0:amd64 (0.8-5) ... dpkg: warning: ignoring request to remove libatk-wrapper-java which isn't installed Removing libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Purging configuration files for libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Removing libatk1.0-0:amd64 (2.14.0-1) ... Purging configuration files for libatk1.0-0:amd64 (2.14.0-1) ... dpkg: warning: ignoring request to remove libatk1.0-data which isn't installed Removing libavahi-client3:amd64 (0.6.31-5) ... Purging configuration files for libavahi-client3:amd64 (0.6.31-5) ... dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed Removing libavahi-common3:amd64 (0.6.31-5) ... Purging configuration files for libavahi-common3:amd64 (0.6.31-5) ... dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Purging configuration files for libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcdt5 (2.38.0-7) ... Purging configuration files for libcdt5 (2.38.0-7) ... Removing libcgraph6 (2.38.0-7) ... Purging configuration files for libcgraph6 (2.38.0-7) ... dpkg: warning: ignoring request to remove libconfig-inifiles-perl which isn't installed Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Purging configuration files for libcups2:amd64 (1.7.5-11+deb8u2) ... dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed Removing libdatrie1:amd64 (0.2.8-1) ... Purging configuration files for libdatrie1:amd64 (0.2.8-1) ... Removing libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Purging configuration files for libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Removing libdrm2:amd64 (2.4.58-2) ... Purging configuration files for libdrm2:amd64 (2.4.58-2) ... dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u4) ... Removing libfann2:amd64 (2.1.0~beta+dfsg-1) ... Purging configuration files for libfann2:amd64 (2.1.0~beta+dfsg-1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... dpkg: warning: ignoring request to remove libfile-chdir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed Removing libflac8:amd64 (1.3.0-3) ... Purging configuration files for libflac8:amd64 (1.3.0-3) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Purging configuration files for libgd3:amd64 (2.1.0-5+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Purging configuration files for libgdbm3:amd64 (1.8.3-13.1) ... Removing libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Purging configuration files for libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libgif4:amd64 (4.1.6-11+deb8u1) ... Purging configuration files for libgif4:amd64 (4.1.6-11+deb8u1) ... Removing libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Purging configuration files for libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Removing libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Purging configuration files for libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Purging configuration files for libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Purging configuration files for libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... dpkg: warning: ignoring request to remove libgo-perl which isn't installed Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Purging configuration files for libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed Removing libgsl0ldbl (1.16+dfsg-2) ... Purging configuration files for libgsl0ldbl (1.16+dfsg-2) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libgtk2.0-0:amd64 (2.24.25-3+deb8u2) ... Purging configuration files for libgtk2.0-0:amd64 (2.24.25-3+deb8u2) ... Removing libgtk2.0-common (2.24.25-3+deb8u2) ... Purging configuration files for libgtk2.0-common (2.24.25-3+deb8u2) ... Removing libgvc6 (2.38.0-7) ... Purging configuration files for libgvc6 (2.38.0-7) ... Removing libgvpr2 (2.38.0-7) ... Purging configuration files for libgvpr2 (2.38.0-7) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Purging configuration files for libharfbuzz0b:amd64 (0.9.35-2) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed Removing libice6:amd64 (2:1.0.9-1+b1) ... Purging configuration files for libice6:amd64 (2:1.0.9-1+b1) ... dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Purging configuration files for libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Purging configuration files for libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing libjson-c2:amd64 (0.11-4) ... Purging configuration files for libjson-c2:amd64 (0.11-4) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Purging configuration files for libkeyutils1:amd64 (1.5.9-5+b1) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing liblcms2-2:amd64 (2.6-3+deb8u1) ... Purging configuration files for liblcms2-2:amd64 (2.6-3+deb8u1) ... dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Purging configuration files for libltdl7:amd64 (2.4.2-1.11+b1) ... dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed Removing libncbi6:amd64 (6.1.20120620-8) ... Purging configuration files for libncbi6:amd64 (6.1.20120620-8) ... dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libnspr4:amd64 (2:4.12-1+debu8u1) ... Purging configuration files for libnspr4:amd64 (2:4.12-1+debu8u1) ... Removing libnss3:amd64 (2:3.26-1+debu8u3) ... Purging configuration files for libnss3:amd64 (2:3.26-1+debu8u3) ... Removing libogg0:amd64 (1.3.2-1) ... Purging configuration files for libogg0:amd64 (1.3.2-1) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Purging configuration files for libp11-kit0:amd64 (0.20.7-1) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpango-1.0-0:amd64 (1.36.8-3) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangoft2-1.0-0:amd64 (1.36.8-3) ... dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed Removing libpathplan4 (2.38.0-7) ... Purging configuration files for libpathplan4 (2.38.0-7) ... Removing libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Purging configuration files for libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Removing libpixman-1-0:amd64 (0.32.6-3) ... Purging configuration files for libpixman-1-0:amd64 (0.32.6-3) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libpulse0:amd64 (5.0-13) ... Purging configuration files for libpulse0:amd64 (5.0-13) ... dpkg: warning: ignoring request to remove libpvm3 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Purging configuration files for libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove librg-exception-perl which isn't installed dpkg: warning: ignoring request to remove librg-reprof-bundle-perl which isn't installed dpkg: warning: ignoring request to remove librg-utils-perl which isn't installed Removing libsctp1:amd64 (1.0.16+dfsg-2) ... Purging configuration files for libsctp1:amd64 (1.0.16+dfsg-2) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Purging configuration files for libsm6:amd64 (2:1.2.2-1+b1) ... Removing libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Purging configuration files for libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Purging configuration files for libtasn1-6:amd64 (4.2-3+deb8u3) ... dpkg: warning: ignoring request to remove libthai-data which isn't installed Removing libthai0:amd64 (0.1.21-1) ... Purging configuration files for libthai0:amd64 (0.1.21-1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Purging configuration files for libtiff5:amd64 (4.0.3-12.3+deb8u5) ... dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed Removing libvorbis0a:amd64 (1.3.4-2+deb8u1) ... Purging configuration files for libvorbis0a:amd64 (1.3.4-2+deb8u1) ... Removing libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Purging configuration files for libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Purging configuration files for libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libwrap0:amd64 (7.6.q-25) ... Purging configuration files for libwrap0:amd64 (7.6.q-25) ... dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u1) ... dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Purging configuration files for libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Purging configuration files for libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-dri2-0:amd64 (1.10-3+b1) ... Removing libxcb-dri3-0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-dri3-0:amd64 (1.10-3+b1) ... Removing libxcb-glx0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-glx0:amd64 (1.10-3+b1) ... Removing libxcb-present0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-present0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-render0:amd64 (1.10-3+b1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-sync1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-sync1:amd64 (1.10-3+b1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... Removing libxcomposite1:amd64 (1:0.4.4-1) ... Purging configuration files for libxcomposite1:amd64 (1:0.4.4-1) ... Removing libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Purging configuration files for libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b1) ... Purging configuration files for libxdamage1:amd64 (1:1.1.4-2+b1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing libxdot4 (2.38.0-7) ... Purging configuration files for libxdot4 (2.38.0-7) ... Removing libxext6:amd64 (2:1.3.3-1) ... Purging configuration files for libxext6:amd64 (2:1.3.3-1) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Purging configuration files for libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Purging configuration files for libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing libxinerama1:amd64 (2:1.1.3-1+b1) ... Purging configuration files for libxinerama1:amd64 (2:1.1.3-1+b1) ... dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Purging configuration files for libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Purging configuration files for libxmu6:amd64 (2:1.1.2-1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Purging configuration files for libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Purging configuration files for libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxshmfence1:amd64 (1.1-4) ... Purging configuration files for libxshmfence1:amd64 (1.1-4) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Purging configuration files for libxt6:amd64 (1:1.1.4-1+b1) ... Removing libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Purging configuration files for libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Removing libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Purging configuration files for libxxf86vm1:amd64 (1:1.1.3-1+b1) ... dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove metastudent which isn't installed dpkg: warning: ignoring request to remove metastudent-data which isn't installed dpkg: warning: ignoring request to remove metastudent-data-2 which isn't installed Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... Removing ncbi-data (6.1.20120620-8) ... Purging configuration files for ncbi-data (6.1.20120620-8) ... dpkg: warning: ignoring request to remove ncbi-seg which isn't installed dpkg: warning: ignoring request to remove ncoils which isn't installed Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... dpkg: warning: ignoring request to remove norsnet which isn't installed dpkg: warning: ignoring request to remove norsp which isn't installed dpkg: warning: ignoring request to remove openjdk-7-jre which isn't installed Removing openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... Purging configuration files for openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... Removing openssl (1.0.1t-1+deb8u8) ... Purging configuration files for openssl (1.0.1t-1+deb8u8) ... dpkg: warning: ignoring request to remove perl which isn't installed Removing perl-modules (5.20.2-3+deb8u11) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... dpkg: warning: ignoring request to remove predictnls which isn't installed dpkg: warning: ignoring request to remove profbval which isn't installed dpkg: warning: ignoring request to remove profisis which isn't installed dpkg: warning: ignoring request to remove profnet-bval which isn't installed dpkg: warning: ignoring request to remove profnet-isis which isn't installed dpkg: warning: ignoring request to remove profnet-norsnet which isn't installed dpkg: warning: ignoring request to remove profnet-prof which isn't installed dpkg: warning: ignoring request to remove profphd which isn't installed dpkg: warning: ignoring request to remove profphd-net which isn't installed dpkg: warning: ignoring request to remove profphd-utils which isn't installed dpkg: warning: ignoring request to remove proftmb which isn't installed Removing python (2.7.9-1) ... Purging configuration files for python (2.7.9-1) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed Removing python2.7 (2.7.9-2+deb8u1) ... Purging configuration files for python2.7 (2.7.9-2+deb8u1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Purging configuration files for python2.7-minimal (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove reprof which isn't installed Removing shared-mime-info (1.3-1) ... Purging configuration files for shared-mime-info (1.3-1) ... dpkg: warning: ignoring request to remove tzdata-java which isn't installed Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg', '--purge', 'bioperl', 'blast2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'disulfinder', 'disulfinder-data', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'graphviz', 'hmmer', 'hmmer2', 'java-common', 'libai-fann-perl', 'libasound2:amd64', 'libasound2-data', 'libasyncns0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbio-perl-perl', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libconfig-inifiles-perl', 'libcups2:amd64', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdrm2:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfann2:amd64', 'libffi6:amd64', 'libfile-chdir-perl', 'libfile-listing-perl', 'libflac8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran3:amd64', 'libgif4:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgo-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgsl0ldbl', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libio-html-perl', 'libio-pty-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-run-perl', 'libjasper1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblist-moreutils-perl', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libogg0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparse-recdescent-perl', 'libpathplan4', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpulse0:amd64', 'libpvm3', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'libsctp1:amd64', 'libsm6:amd64', 'libsndfile1:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libvpx1:amd64', 'libwrap0:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpath-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'make', 'metastudent', 'metastudent-data', 'metastudent-data-2', 'mime-support', 'ncbi-data', 'ncbi-seg', 'ncoils', 'netbase', 'norsnet', 'norsp', 'openjdk-7-jre:amd64', 'openjdk-7-jre-headless:amd64', 'openssl', 'perl', 'perl-modules', 'predictnls', 'profbval', 'profisis', 'profnet-bval', 'profnet-isis', 'profnet-norsnet', 'profnet-prof', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'reprof', 'shared-mime-info', 'tzdata-java', 'x11-common'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg', '--purge', 'predictprotein'] 1m2.8s DUMP: dpkg: warning: ignoring request to remove predictprotein which isn't installed 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg', '--purge', 'predictprotein'] 1m2.8s INFO: Running scripts post_purge 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_purge_exceptions'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_purge_exceptions'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg', '--purge', '--pending'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg', '--purge', '--pending'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg', '--remove', '--pending'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg', '--remove', '--pending'] 1m2.8s INFO: Running scripts post_test 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_test_exceptions'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'tmp/scripts/post_test_exceptions'] 1m2.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 1m3.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 1m3.8s DEBUG: No broken symlinks as far as we can find. 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg-divert', '--list'] 1m3.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'dpkg-divert', '--list'] 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', 'clean'] 1m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4', 'apt-get', 'clean'] 1m3.8s DEBUG: Recording chroot state 1m4.2s INFO: PASS: Installation and purging test. 1m4.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/shm'] 1m4.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/shm'] 1m4.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/console'] 1m4.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/console'] 1m4.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/ptmx'] 1m4.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/ptmx'] 1m4.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/pts'] 1m4.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/dev/pts'] 1m4.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/proc'] 1m4.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4/proc'] 1m4.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 1m4.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpk6m7ows4'] 1m4.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpk6m7ows4 1m4.8s INFO: PASS: All tests. 1m4.8s INFO: piuparts run ends. ret=0 End: 2022-10-29 12:17:06 GMT