Start: 2023-02-01 23:51:52 GMT [jessie] Package: med-cloud Source: debian-med Version: 2.0 Installed-Size: 62 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-tasks (= 2.0), med-config (= 2.0) Recommends: acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, anfo, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, biomaj, bioperl, bioperl-run, biosquid, blast2, bowtie, bowtie2, boxshade, bwa, cain, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, concavity, datamash, discosnp, disulfinder, dnaclust, dssp, fastdnaml, fastlink, fastqc, fasttree, fastx-toolkit, filo, fitgcp, flexbar, freecontact, gasic, genometools, giira, grinder, idba, infernal, kissplice, last-align, loki, macs, mapsembler2, maq, melting, minia, mipe, mira-assembler, mothur, ncbi-epcr, ncbi-tools-bin, ncoils, parsinsert, perm, phyml, phyutility, picard-tools, plink, primer3, python-cogent, rnahybrid, rtax, samtools, smalt, ssake, tophat, velvet Suggests: abyss, bagpipe, cufflinks Description: Debian Med bioinformatics applications usable in cloud computing Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: extra Filename: pool/main/d/debian-med/med-cloud_2.0_all.deb Size: 12626 MD5sum: 5438d9d8a05ad2b2f9cb232353c11e84 SHA1: ad9c6bec2b1c85762067b095cca812dfe532803b SHA256: d26fbc16c0666a65fe6895f37f6851940fc247726cbc11260c7f49f182f77c42 [stretch] Package: med-cloud Source: debian-med Version: 3.0.1 Installed-Size: 35 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-tasks (= 3.0.1), med-config (= 3.0.1) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, anfo, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, biomaj, bioperl, bioperl-run, biosquid, blast2, bowtie, bowtie2, boxshade, bwa, cain, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fastx-toolkit, filo, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, giira, glam2, grinder, gromacs, hhsuite, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, pynast, python-biopython, python-cogent, python3-biopython, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tophat, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise, zalign Suggests: bagpipe, cufflinks, embassy-phylip, gmap, qiime, r-other-valdar-bagphenotype.library Description: Debian Med bioinformatics applications usable in cloud computing Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: extra Filename: pool/main/d/debian-med/med-cloud_3.0.1_all.deb Size: 15550 MD5sum: c030c33cd6cd52d6080fc4bf9eb979f1 SHA256: d6cd199748d3199304097d080797ccbab08fec6b411431003ce6ca55cd7f6cd8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt med-cloud=3.0.1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt med-cloud=3.0.1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpubq9xw8v 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpubq9xw8v 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpubq9xw8v/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-get', 'update'] 0m4.4s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Ign http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main Translation-en Hit http://deb.debian.org jessie/main amd64 Packages Reading package lists... W: GPG error: http://deb.debian.org jessie Release: The following signatures were invalid: KEYEXPIRED 1668891673 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-get', 'update'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-get', '-yf', 'dist-upgrade'] 0m4.7s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-get', '-yf', 'dist-upgrade'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s INFO: Running scripts post_setup 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_dummy_users'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_dummy_users'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat 0m6.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v'] 0m7.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v'] 0m7.1s INFO: Running scripts is_testable 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s INFO: Running scripts pre_test 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_test_root_password'] 0m7.2s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_test_root_password'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m7.2s DUMP: Package: med-cloud Source: debian-med Version: 2.0 Installed-Size: 62 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-tasks (= 2.0), med-config (= 2.0) Recommends: acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, anfo, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, biomaj, bioperl, bioperl-run, biosquid, blast2, bowtie, bowtie2, boxshade, bwa, cain, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, concavity, datamash, discosnp, disulfinder, dnaclust, dssp, fastdnaml, fastlink, fastqc, fasttree, fastx-toolkit, filo, fitgcp, flexbar, freecontact, gasic, genometools, giira, grinder, idba, infernal, kissplice, last-align, loki, macs, mapsembler2, maq, melting, minia, mipe, mira-assembler, mothur, ncbi-epcr, ncbi-tools-bin, ncoils, parsinsert, perm, phyml, phyutility, picard-tools, plink, primer3, python-cogent, rnahybrid, rtax, samtools, smalt, ssake, tophat, velvet Suggests: abyss, bagpipe, cufflinks Description-en: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: extra Filename: pool/main/d/debian-med/med-cloud_2.0_all.deb Size: 12626 MD5sum: 5438d9d8a05ad2b2f9cb232353c11e84 SHA1: ad9c6bec2b1c85762067b095cca812dfe532803b SHA256: d26fbc16c0666a65fe6895f37f6851940fc247726cbc11260c7f49f182f77c42 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m7.2s INFO: apt-cache knows about the following packages: med-cloud 0m7.2s INFO: Running scripts pre_install 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-cache', 'policy'] 0m7.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-cache', 'policy'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-cache', 'policy', 'med-cloud'] 0m7.3s DUMP: med-cloud: Installed: (none) Candidate: 2.0 Version table: 2.0 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-cache', 'policy', 'med-cloud'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-get', '-y', 'install', 'med-cloud'] 0m7.7s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: acedb-other adwaita-icon-theme aevol alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2-bin aragorn arden at-spi2-core autodock autodock-vina autogrid bamtools bc bedtools binutils biomaj bioperl bioperl-run biosquid blast2 blends-common blt bowtie bowtie2 boxshade bwa ca-certificates ca-certificates-java cain cain-examples cain-solvers cassiopee cd-hit cdbfasta circos circos-tools clearcut clonalframe clustalo clustalw colord colord-data concavity cpp cpp-4.9 cython datamash dbus dconf-gsettings-backend dconf-service default-jre default-jre-headless dialign dialign-tx dialign-tx-data discosnp disulfinder disulfinder-data dmidecode dnaclust dssp dvipng emboss emboss-data emboss-lib exonerate fastdnaml fastlink fastqc fasttree fastx-toolkit file filo fitgcp flexbar fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix fonts-texgyre freecontact g++ g++-4.9 gasic gcc gcc-4.9 genometools genometools-common ghostscript giira glib-networking glib-networking-common glib-networking-services glpk-utils graphviz grinder gsettings-desktop-schemas gsfonts hicolor-icon-theme hmmer idba ifupdown infernal init-system-helpers iproute2 ipython isc-dhcp-client isc-dhcp-common java-common javascript-common junit4 kalign kissplice krb5-locales laptop-detect last-align libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libamd2.3.1 libanfo0 libapache-dbi-perl libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libart-2.0-2 libasan1 libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatm1 libatomic1 libatspi2.0-0 libaudio2 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libb-hooks-op-check-perl libbambamc0 libbamtools2.3.0 libbareword-filehandles-perl libbcprov-java libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-program-options1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libbsd-resource-perl libbsd0 libbytecode-java libc-dev-bin libc6-dev libcache-cache-perl libcairo-gobject2 libcairo2 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcap-ng0 libcarp-always-perl libcarp-clan-perl libcassie1 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcloog-isl4 libcofoja-java libcolamd2.8.0 libcolord2 libcolorhug2 libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-math3-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcr0 libcroco3 libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libdata-dumper-simple-perl libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdconf1 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdns-export100 libdom4j-java libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libeigen3-dev libelf1 libelfg0 libelk0 libencode-locale-perl liberror-perl libexif12 libexpat1 libexpat1-dev libexporter-tiny-perl libfcgi-perl libffi6 libfile-basedir-perl libfile-copy-recursive-perl libfile-desktopentry-perl libfile-homedir-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-which-perl libflac8 libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreecontact0 libfreetype6 libfreezethaw-perl libg20 libgcc-4.9-dev libgd-graph-perl libgd-perl libgd-text-perl libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgetopt-euclid-perl libgetopt-simple-perl libgflags2 libgfortran3 libgif4 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglib2.0-0 libglib2.0-data libglpk-java libglpk36 libglu1-mesa libgmp10 libgnutls-deb0-28 libgomp1 libgoogle-glog0 libgphoto2-6 libgphoto2-l10n libgphoto2-port10 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgtextutils0 libgtk-3-0 libgtk-3-bin libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgudev-1.0-0 libgusb2 libgvc6 libgvpr2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu52 libidn11 libieee1284-3 libijs-0.35 libimport-into-perl libindirect-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libisorelax-java libitm1 libjasper1 libjava-xmlbuilder-java libjaxen-java libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjcommon-java libjdom1-java libjets3t-java libjgoodies-common-java libjgoodies-forms-java libjpeg62-turbo libjs-jquery libjs-jquery-ui libjsch-java libjson-c2 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp0 libjzlib-java libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-allutils-perl liblist-moreutils-perl libllvm3.5 liblog-message-perl liblog-message-simple-perl liblog4j1.2-java liblsan0 libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmail-java libmailtools-perl libmath-bezier-perl libmath-derivative-perl libmath-random-mt-perl libmath-round-perl libmath-spline-perl libmath-tamuanova-perl libmath-vec-perl libmath-vecstat-perl libmime-tools-perl libmldbm-perl libmng1 libmodule-build-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmpc3 libmpfr4 libmro-compat-perl libmsv-java libmultidimensional-perl libmysql-java libmysqlclient18 libncbi6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnotify4 libnspr4 libnss3 libnuma1 libogg0 libole-storage-lite-perl libopenjpeg5 libopenmpi1.6 liboro-java libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl4-corelibs-perl libperl5.20 libperlio-gzip-perl libpixman-1-0 libpng12-0 libpod-coverage-perl libpod-latex-perl libpod-readme-perl libpolkit-agent-1-0 libpolkit-backend-1-0 libpolkit-gobject-1-0 libpoppler-qt4-4 libpoppler46 libpopt0 libpostscript-perl libpotrace0 libpq5 libprotobuf9 libproxy1 libptexenc1 libpth20 libpulse0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqt4-xml libqtcore4 libqtgui4 libquadmath0 libreadonly-perl libregexp-common-perl libregexp-java librelaxng-datatype-java librest-0.7-0 librole-tiny-perl librsvg2-2 librsvg2-common libruby2.1 libsam-java libsane libsane-common libsane-extras libsane-extras-common libsasl2-2 libsasl2-modules libsasl2-modules-db libsaxonb-java libsctp1 libservlet2.5-java libset-intspan-perl libset-scalar-perl libsm6 libsndfile1 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libstdc++-4.9-dev libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libsynctex1 libtamuanova-0.2 libtask-weaken-perl libtasn1-6 libtbb2 libtcl8.6 libtcmalloc-minimal4 libtdb1 libterm-readkey-perl libterm-ui-perl libtest-pod-perl libtext-format-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtk8.6 libtre5 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libunicode-map-perl libunwind8 liburi-perl libusb-1.0-0 libutempter0 libv4l-0 libv4lconvert0 libvorbis0a libvorbisenc2 libvorbisfile3 libvpx1 libwayland-client0 libwayland-cursor0 libwebp5 libwebpdemux1 libwebpmux1 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase3.0-0 libwxgtk3.0-0 libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzzip-0-13 linux-libc-dev lksctp-tools lmodern loki lua-filesystem lua-lpeg lua-md5 lynx lynx-cur macs mafft manpages manpages-dev mapsembler2 maq med-config med-tasks melting menu mime-support minia mipe mira-assembler mothur muscle mustang mysql-client mysql-client-5.5 mysql-common ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncoils netbase notification-daemon ocl-icd-libopencl1 openjdk-7-jre openjdk-7-jre-headless openmpi-bin openmpi-common openssl parsinsert perl perl-doc perl-modules perl-tk perm phyml phyutility picard-tools pkg-config plink poa policykit-1 poppler-data prank prerex preview-latex-style primer3 probalign probcons proda prosper ps2eps python python-all python-all-dev python-biopython python-biopython-doc python-cairo python-cogent python-dateutil python-decorator python-dev python-glade2 python-gmpy python-gobject-2 python-gtk2 python-htseq python-imaging python-matplotlib python-matplotlib-data python-minimal python-mock python-mpmath python-nose python-numpy python-pexpect python-pil python-pkg-resources python-pyglet python-pyparsing python-pyrex python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python-simplegeneric python-six python-support python-sympy python-tk python-tz python-wxgtk3.0 python-wxversion python2.7 python2.7-dev python2.7-minimal qtcore4-l10n rename rnahybrid rtax ruby ruby2.1 rubygems-integration samtools sane-utils seqan-apps sgml-base shared-mime-info sim4 smalt ssake t-coffee tasksel tasksel-data tcl tcl8.6 tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc tigr-glimmer tipa tk tk8.6 tk8.6-blt2.5 tm-align tophat ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata-java ucf update-inetd velvet vprerex wise wise-data x11-common x11-utils x11-xserver-utils xbitmaps xdg-user-dirs xdg-utils xkb-data xml-core xterm Suggested packages: altree-examples ant-doc ant-gcj default-jdk java-compiler java-sdk libbcel-java ivy ant-optional-gcj antlr javacc junit jython libbsf-java libcommons-net-java libjaxp1.3-java libjdepend-java libxalan2-java www-browser apache2-doc apache2-suexec-pristine apache2-suexec-custom autodocktools binutils-doc mysql-server groff-base gmap paml phylip libvibrant6b ncbi-rrna-data ncbi-tools-x11 blends-doc blt-demo bowtie-examples bowtie2-examples seaview xfig clustalx conservation-code pymol cpp-doc gcc-4.9-locales dbus-x11 emboss-doc emboss-test embassy fastlink-doc fontforge bash-completion hhsuite g++-multilib g++-4.9-multilib gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-4.9-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath0-dbg ghostscript-x graphviz-doc hmmer-doc ppp rdnssd net-tools iproute2-doc ipython-doc ipython-notebook ipython-qtconsole python-profiler python-zmq resolvconf avahi-autoipd equivs apache2 lighttpd httpd parallel libasound2-plugins alsa-utils liblapack3 nas libdigest-hmac-perl libgssapi-perl libaxis-java-doc libbcprov-java-doc libxml-sax-expatxs-perl java-virtual-machine libjgrapht-java libbiojava-java-doc glibc-doc libcanberra-gtk0 libcanberra-pulse libcommons-collections3-java-doc libcommons-dbcp-java-doc libgeronimo-jta-1.1-spec-java libcommons-discovery-java-doc libcommons-httpclient-java-doc libcommons-jexl2-java-doc libcommons-lang-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java libcommons-net2-java-doc blcr-dkms cups-common libnet-daemon-perl libsql-statement-perl libdom4j-java-doc libeigen3-doc libmrpt-dev fonts-dustin libgd-tools libiodbc2-dev libmysqlclient-dev gnutls-bin gphoto2 gtkam gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html krb5-doc krb5-user gvfs libhsqldb-java-doc libdata-dump-perl libhtml-element-extended-perl libhwloc-contrib-plugins libdb-file-lock-perl libfile-readbackwards-perl libjasper-runtime libjava-xmlbuilder-java-doc libjcommon-java-doc libjdom1-java-doc libjgoodies-common-java-doc libjgoodies-forms-java-doc libjs-jquery-ui-docs liblcms2-utils liblog4j1.2-java-doc libmail-java-doc libslf4j-java libmime-base64-perl uuid libscalar-number-perl pciutils pcscd pulseaudio qt4-qtconfig librsvg2-bin avahi-daemon hplip hpoj libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libsaxonb-java-doc libmime-lite-perl libnet-jabber-perl libstdc++-4.9-doc tre-agrep libdevel-stacktrace-perl libauthen-ntlm-perl libxerces2-java-doc libxerces2-java-gcj libxml-commons-resolver1.1-java-doc libunicode-map8-perl libunicode-string-perl xml-twig-tools libxom-java-doc libyaml-shell-perl loki-doc man-browser abyss bagpipe cufflinks melting-gui menu-l10n gksu kde-runtime ktsuss mira-examples mira-doc mustang-testdata gnuplot opencl-icd icedtea-7-plugin icedtea-7-jre-jamvm libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic gfortran openmpi-checkpoint libterm-readline-gnu-perl libterm-readline-perl-perl groff libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl r-base-core poppler-utils fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra pdf-viewer postscript-viewer python-mysqldb python-rdflib python-psycopg2 raxml python-cogent-doc python-gtk2-doc python-gobject-2-dbg gir1.2-gtk-3.0 inkscape python-cairocffi python-configobj python-excelerator python-gobject python-matplotlib-doc python-qt4 python-sip 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texlive-pstricks prosper ps2eps python-all python2.7-dev python-dev python-all-dev python-biopython-doc python-cairo python-gobject-2 python-gtk2 python-glade2 python-gmpy python-pil python-imaging python-mpmath python-pyglet python-renderpm python-sympy python-tk python-wxversion python-wxgtk3.0 rename rnahybrid rtax rubygems-integration libruby2.1 ruby2.1 ruby samtools update-inetd sane-utils sim4 smalt ssake t-coffee tcl8.6 tcl tcpd tex-gyre texlive-extra-utils texlive-font-utils ttf-adf-universalis ttf-adf-gillius fonts-stix ttf-adf-accanthis texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pictures-doc texlive-pstricks-doc tigr-glimmer tipa tk8.6 tk tm-align velvet xbitmaps xterm vprerex wise-data wise x11-utils x11-xserver-utils xdg-user-dirs xml-core acedb-other libibverbs1 libopenmpi1.6 ampliconnoise autodock-vina libeigen3-dev cain-solvers cain cain-examples concavity datamash disulfinder-data disulfinder fasttree freecontact genometools-common genometools libhwloc-plugins libset-scalar-perl lynx-cur lynx med-tasks med-config med-cloud openmpi-common openmpi-bin python-cogent E: There are problems and -y was used without --force-yes 0m7.7s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v', 'apt-get', '-y', 'install', 'med-cloud'] Reading package lists... Building dependency tree... The following extra packages will be installed: acedb-other adwaita-icon-theme aevol alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2-bin aragorn arden at-spi2-core autodock autodock-vina autogrid bamtools bc bedtools binutils biomaj bioperl bioperl-run biosquid blast2 blends-common blt bowtie bowtie2 boxshade bwa ca-certificates ca-certificates-java cain cain-examples cain-solvers cassiopee cd-hit cdbfasta circos circos-tools clearcut clonalframe clustalo clustalw colord colord-data concavity cpp cpp-4.9 cython datamash dbus dconf-gsettings-backend dconf-service default-jre default-jre-headless dialign dialign-tx dialign-tx-data discosnp disulfinder disulfinder-data dmidecode dnaclust dssp dvipng emboss emboss-data emboss-lib exonerate fastdnaml fastlink fastqc fasttree fastx-toolkit file filo fitgcp flexbar fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix fonts-texgyre freecontact g++ g++-4.9 gasic gcc gcc-4.9 genometools genometools-common ghostscript giira glib-networking glib-networking-common glib-networking-services glpk-utils graphviz grinder gsettings-desktop-schemas gsfonts hicolor-icon-theme hmmer idba ifupdown infernal init-system-helpers iproute2 ipython isc-dhcp-client isc-dhcp-common java-common javascript-common junit4 kalign kissplice krb5-locales laptop-detect last-align libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libamd2.3.1 libanfo0 libapache-dbi-perl libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libart-2.0-2 libasan1 libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatm1 libatomic1 libatspi2.0-0 libaudio2 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libb-hooks-op-check-perl libbambamc0 libbamtools2.3.0 libbareword-filehandles-perl libbcprov-java libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-program-options1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libbsd-resource-perl libbsd0 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libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzzip-0-13 linux-libc-dev lksctp-tools lmodern loki lua-filesystem lua-lpeg lua-md5 lynx lynx-cur macs mafft manpages manpages-dev mapsembler2 maq med-config med-tasks melting menu mime-support minia mipe mira-assembler mothur muscle mustang mysql-client mysql-client-5.5 mysql-common ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncoils netbase notification-daemon ocl-icd-libopencl1 openjdk-7-jre openjdk-7-jre-headless openmpi-bin openmpi-common openssl parsinsert perl perl-doc perl-modules perl-tk perm phyml phyutility picard-tools pkg-config plink poa policykit-1 poppler-data prank prerex preview-latex-style primer3 probalign probcons proda prosper ps2eps python python-all python-all-dev python-biopython python-biopython-doc python-cairo python-cogent python-dateutil python-decorator python-dev python-glade2 python-gmpy python-gobject-2 python-gtk2 python-htseq python-imaging python-matplotlib python-matplotlib-data python-minimal python-mock python-mpmath python-nose python-numpy python-pexpect python-pil python-pkg-resources python-pyglet python-pyparsing python-pyrex python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python-simplegeneric python-six python-support python-sympy python-tk python-tz python-wxgtk3.0 python-wxversion python2.7 python2.7-dev python2.7-minimal qtcore4-l10n rename rnahybrid rtax ruby ruby2.1 rubygems-integration samtools sane-utils seqan-apps sgml-base shared-mime-info sim4 smalt ssake t-coffee tasksel tasksel-data tcl tcl8.6 tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc tigr-glimmer tipa tk tk8.6 tk8.6-blt2.5 tm-align tophat ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata-java ucf update-inetd velvet vprerex wise wise-data x11-common x11-utils x11-xserver-utils xbitmaps xdg-user-dirs xdg-utils xkb-data xml-core xterm Suggested packages: altree-examples ant-doc ant-gcj default-jdk java-compiler java-sdk libbcel-java ivy ant-optional-gcj antlr javacc junit jython libbsf-java libcommons-net-java libjaxp1.3-java libjdepend-java libxalan2-java www-browser apache2-doc apache2-suexec-pristine apache2-suexec-custom autodocktools binutils-doc mysql-server groff-base gmap paml phylip libvibrant6b ncbi-rrna-data ncbi-tools-x11 blends-doc blt-demo bowtie-examples bowtie2-examples seaview xfig clustalx conservation-code pymol cpp-doc gcc-4.9-locales dbus-x11 emboss-doc emboss-test embassy fastlink-doc fontforge bash-completion hhsuite g++-multilib g++-4.9-multilib gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-4.9-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath0-dbg ghostscript-x graphviz-doc hmmer-doc ppp rdnssd net-tools iproute2-doc ipython-doc ipython-notebook ipython-qtconsole python-profiler python-zmq resolvconf avahi-autoipd equivs apache2 lighttpd httpd parallel libasound2-plugins alsa-utils liblapack3 nas libdigest-hmac-perl libgssapi-perl libaxis-java-doc libbcprov-java-doc libxml-sax-expatxs-perl java-virtual-machine libjgrapht-java libbiojava-java-doc glibc-doc libcanberra-gtk0 libcanberra-pulse libcommons-collections3-java-doc libcommons-dbcp-java-doc libgeronimo-jta-1.1-spec-java libcommons-discovery-java-doc libcommons-httpclient-java-doc libcommons-jexl2-java-doc libcommons-lang-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java libcommons-net2-java-doc blcr-dkms cups-common libnet-daemon-perl libsql-statement-perl libdom4j-java-doc libeigen3-doc libmrpt-dev fonts-dustin libgd-tools libiodbc2-dev libmysqlclient-dev gnutls-bin gphoto2 gtkam gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html krb5-doc krb5-user gvfs libhsqldb-java-doc libdata-dump-perl libhtml-element-extended-perl libhwloc-contrib-plugins libdb-file-lock-perl libfile-readbackwards-perl libjasper-runtime libjava-xmlbuilder-java-doc libjcommon-java-doc libjdom1-java-doc libjgoodies-common-java-doc libjgoodies-forms-java-doc libjs-jquery-ui-docs liblcms2-utils liblog4j1.2-java-doc libmail-java-doc libslf4j-java libmime-base64-perl uuid libscalar-number-perl pciutils pcscd pulseaudio qt4-qtconfig librsvg2-bin avahi-daemon hplip hpoj libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libsaxonb-java-doc libmime-lite-perl libnet-jabber-perl libstdc++-4.9-doc tre-agrep libdevel-stacktrace-perl libauthen-ntlm-perl libxerces2-java-doc libxerces2-java-gcj libxml-commons-resolver1.1-java-doc libunicode-map8-perl libunicode-string-perl xml-twig-tools libxom-java-doc libyaml-shell-perl loki-doc man-browser abyss bagpipe cufflinks melting-gui menu-l10n gksu kde-runtime ktsuss mira-examples mira-doc mustang-testdata gnuplot opencl-icd icedtea-7-plugin icedtea-7-jre-jamvm libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic gfortran openmpi-checkpoint libterm-readline-gnu-perl libterm-readline-perl-perl groff libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl r-base-core poppler-utils fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra pdf-viewer postscript-viewer python-mysqldb python-rdflib python-psycopg2 raxml python-cogent-doc python-gtk2-doc python-gobject-2-dbg gir1.2-gtk-3.0 inkscape python-cairocffi python-configobj python-excelerator python-gobject python-matplotlib-doc python-qt4 python-sip python-tornado python-traits ttf-staypuft python-mock-doc python-gmpy2 python-mpmath-doc python-coverage python-nose-doc python-numpy-dbg python-numpy-doc python-pexpect-doc python-pil-doc python-pil-dbg python-distribute python-distribute-doc python-renderpm-dbg python-egenix-mxtexttools python-reportlab-doc tix python-tk-dbg python2.7-doc binfmt-support ri ruby-dev bundler unpaper sgml-base-doc ssake-examples t-coffee-examples fsa tcl-tclreadline debhelper latexdiff latexmk dvidvi fragmaster lacheck purifyeps xindy chktex psutils t1utils cm-super python-pygments libtcltk-ruby dot2tex rasmol velvet-example wise-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin xfonts-cyrillic Recommended packages: libgd-gd2-perl libstorable-perl libarchive-tar-perl python-ctypes wish The following NEW packages will be installed: acedb-other adwaita-icon-theme aevol alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2-bin aragorn arden at-spi2-core autodock 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fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix fonts-texgyre freecontact g++ g++-4.9 gasic gcc gcc-4.9 genometools genometools-common ghostscript giira glib-networking glib-networking-common glib-networking-services glpk-utils graphviz grinder gsettings-desktop-schemas gsfonts hicolor-icon-theme hmmer idba ifupdown infernal init-system-helpers iproute2 ipython isc-dhcp-client isc-dhcp-common java-common javascript-common junit4 kalign kissplice krb5-locales laptop-detect last-align libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libamd2.3.1 libanfo0 libapache-dbi-perl libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libart-2.0-2 libasan1 libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatm1 libatomic1 libatspi2.0-0 libaudio2 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libb-hooks-op-check-perl libbambamc0 libbamtools2.3.0 libbareword-filehandles-perl libbcprov-java libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-program-options1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libbsd-resource-perl libbsd0 libbytecode-java libc-dev-bin libc6-dev libcache-cache-perl libcairo-gobject2 libcairo2 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcap-ng0 libcarp-always-perl libcarp-clan-perl libcassie1 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcloog-isl4 libcofoja-java libcolamd2.8.0 libcolord2 libcolorhug2 libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-math3-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcr0 libcroco3 libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libdata-dumper-simple-perl libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdconf1 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdns-export100 libdom4j-java libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libeigen3-dev libelf1 libelfg0 libelk0 libencode-locale-perl liberror-perl libexif12 libexpat1 libexpat1-dev libexporter-tiny-perl libfcgi-perl libffi6 libfile-basedir-perl libfile-copy-recursive-perl libfile-desktopentry-perl libfile-homedir-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-which-perl libflac8 libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreecontact0 libfreetype6 libfreezethaw-perl libg20 libgcc-4.9-dev libgd-graph-perl libgd-perl libgd-text-perl libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgetopt-euclid-perl libgetopt-simple-perl libgflags2 libgfortran3 libgif4 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglib2.0-0 libglib2.0-data libglpk-java libglpk36 libglu1-mesa libgmp10 libgnutls-deb0-28 libgomp1 libgoogle-glog0 libgphoto2-6 libgphoto2-l10n libgphoto2-port10 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgtextutils0 libgtk-3-0 libgtk-3-bin libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgudev-1.0-0 libgusb2 libgvc6 libgvpr2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu52 libidn11 libieee1284-3 libijs-0.35 libimport-into-perl libindirect-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libisorelax-java libitm1 libjasper1 libjava-xmlbuilder-java libjaxen-java libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjcommon-java libjdom1-java libjets3t-java libjgoodies-common-java libjgoodies-forms-java libjpeg62-turbo libjs-jquery libjs-jquery-ui libjsch-java libjson-c2 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp0 libjzlib-java libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-allutils-perl liblist-moreutils-perl libllvm3.5 liblog-message-perl liblog-message-simple-perl liblog4j1.2-java liblsan0 libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmail-java libmailtools-perl libmath-bezier-perl libmath-derivative-perl libmath-random-mt-perl libmath-round-perl libmath-spline-perl libmath-tamuanova-perl libmath-vec-perl libmath-vecstat-perl libmime-tools-perl libmldbm-perl libmng1 libmodule-build-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmpc3 libmpfr4 libmro-compat-perl libmsv-java libmultidimensional-perl libmysql-java libmysqlclient18 libncbi6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnotify4 libnspr4 libnss3 libnuma1 libogg0 libole-storage-lite-perl libopenjpeg5 libopenmpi1.6 liboro-java libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl4-corelibs-perl libperl5.20 libperlio-gzip-perl libpixman-1-0 libpng12-0 libpod-coverage-perl libpod-latex-perl libpod-readme-perl libpolkit-agent-1-0 libpolkit-backend-1-0 libpolkit-gobject-1-0 libpoppler-qt4-4 libpoppler46 libpopt0 libpostscript-perl libpotrace0 libpq5 libprotobuf9 libproxy1 libptexenc1 libpth20 libpulse0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqt4-xml libqtcore4 libqtgui4 libquadmath0 libreadonly-perl libregexp-common-perl libregexp-java librelaxng-datatype-java librest-0.7-0 librole-tiny-perl librsvg2-2 librsvg2-common libruby2.1 libsam-java libsane libsane-common libsane-extras libsane-extras-common libsasl2-2 libsasl2-modules libsasl2-modules-db libsaxonb-java libsctp1 libservlet2.5-java libset-intspan-perl libset-scalar-perl libsm6 libsndfile1 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libstdc++-4.9-dev libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libsynctex1 libtamuanova-0.2 libtask-weaken-perl libtasn1-6 libtbb2 libtcl8.6 libtcmalloc-minimal4 libtdb1 libterm-readkey-perl libterm-ui-perl libtest-pod-perl libtext-format-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtk8.6 libtre5 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libunicode-map-perl libunwind8 liburi-perl libusb-1.0-0 libutempter0 libv4l-0 libv4lconvert0 libvorbis0a libvorbisenc2 libvorbisfile3 libvpx1 libwayland-client0 libwayland-cursor0 libwebp5 libwebpdemux1 libwebpmux1 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase3.0-0 libwxgtk3.0-0 libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzzip-0-13 linux-libc-dev lksctp-tools lmodern loki lua-filesystem lua-lpeg lua-md5 lynx lynx-cur macs mafft manpages manpages-dev mapsembler2 maq med-cloud med-config med-tasks melting menu mime-support minia mipe mira-assembler mothur muscle mustang mysql-client mysql-client-5.5 mysql-common ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncoils netbase notification-daemon ocl-icd-libopencl1 openjdk-7-jre openjdk-7-jre-headless openmpi-bin openmpi-common openssl parsinsert perl perl-doc perl-modules perl-tk perm phyml phyutility picard-tools pkg-config plink poa policykit-1 poppler-data prank prerex preview-latex-style primer3 probalign probcons proda prosper ps2eps python python-all python-all-dev python-biopython python-biopython-doc python-cairo python-cogent python-dateutil python-decorator python-dev python-glade2 python-gmpy python-gobject-2 python-gtk2 python-htseq python-imaging python-matplotlib python-matplotlib-data python-minimal python-mock python-mpmath python-nose python-numpy python-pexpect python-pil python-pkg-resources python-pyglet python-pyparsing python-pyrex python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python-simplegeneric python-six python-support python-sympy python-tk python-tz python-wxgtk3.0 python-wxversion python2.7 python2.7-dev python2.7-minimal qtcore4-l10n rename rnahybrid rtax ruby ruby2.1 rubygems-integration samtools sane-utils seqan-apps sgml-base shared-mime-info sim4 smalt ssake t-coffee tasksel tasksel-data tcl tcl8.6 tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc tigr-glimmer tipa tk tk8.6 tk8.6-blt2.5 tm-align tophat ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata-java ucf update-inetd velvet vprerex wise wise-data x11-common x11-utils x11-xserver-utils xbitmaps 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WARNING: The following packages cannot be authenticated! libboost-iostreams1.55.0 libgdbm3 libjson-c2 libpopt0 libssl1.0.0 tasksel-data tasksel libbsd0 libedit2 libgmp10 libnettle4 libhogweed2 libffi6 libp11-kit0 libtasn1-6 libgnutls-deb0-28 libkeyutils1 libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2 libidn11 libsasl2-modules-db libsasl2-2 libldap-2.4-2 libmagic1 libsqlite3-0 libwrap0 libxml2 perl-modules perl libpython2.7-minimal python2.7-minimal python-minimal mime-support libexpat1 libpython2.7-stdlib python2.7 libpython-stdlib python fonts-circos-symbols fonts-cmu libregexp-common-perl libcarp-always-perl libconfig-general-perl libdata-dumper-simple-perl libpng12-0 libfreetype6 ucf fonts-dejavu-core fonts-liberation fontconfig-config libfontconfig1 libjpeg62-turbo libjbig0 libtiff5 libvpx1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxpm4 libgd3 libgd-perl libgetopt-simple-perl libmath-bezier-perl libmath-round-perl libparams-classify-perl libmodule-runtime-perl 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texlive-pstricks prosper ps2eps python-all python2.7-dev python-dev python-all-dev python-biopython-doc python-cairo python-gobject-2 python-gtk2 python-glade2 python-gmpy python-pil python-imaging python-mpmath python-pyglet python-renderpm python-sympy python-tk python-wxversion python-wxgtk3.0 rename rnahybrid rtax rubygems-integration libruby2.1 ruby2.1 ruby samtools update-inetd sane-utils sim4 smalt ssake t-coffee tcl8.6 tcl tcpd tex-gyre texlive-extra-utils texlive-font-utils ttf-adf-universalis ttf-adf-gillius fonts-stix ttf-adf-accanthis texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pictures-doc texlive-pstricks-doc tigr-glimmer tipa tk8.6 tk tm-align velvet xbitmaps xterm vprerex wise-data wise x11-utils x11-xserver-utils xdg-user-dirs xml-core acedb-other libibverbs1 libopenmpi1.6 ampliconnoise autodock-vina libeigen3-dev cain-solvers cain cain-examples concavity datamash disulfinder-data disulfinder fasttree freecontact genometools-common genometools libhwloc-plugins libset-scalar-perl lynx-cur lynx med-tasks med-config med-cloud openmpi-common openmpi-bin python-cogent E: There are problems and -y was used without --force-yes 0m8.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/shm'] 0m8.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/shm'] 0m8.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/console'] 0m8.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/console'] 0m8.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/ptmx'] 0m8.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/ptmx'] 0m8.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/pts'] 0m8.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/dev/pts'] 0m8.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/proc'] 0m8.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v/proc'] 0m8.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v'] 0m8.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpubq9xw8v'] 0m8.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpubq9xw8v 0m8.2s ERROR: piuparts run ends. ret=1 End: 2023-02-01 23:52:00 GMT