Start: 2023-01-02 08:03:53 GMT [jessie] Package: pynast Version: 1.2.2-1 Installed-Size: 324 Maintainer: Debian Med Packaging Team Architecture: all Replaces: python-pynast Provides: python-pynast Depends: python (>= 2.7), python (<< 2.8), libjs-jquery, libjs-underscore Recommends: blast2, clustalw, mafft, muscle, python-mpi4py Suggests: uclust Conflicts: python-pynast Description: alignment of short DNA sequences Homepage: http://pynast.sourceforge.net/ Description-md5: f1947c7dd3400e1226d490b83db3a814 Section: python Priority: extra Filename: pool/main/p/pynast/pynast_1.2.2-1_all.deb Size: 81106 MD5sum: 2772563b7ed81219f7b367146b848476 SHA1: f4ec9fafdf129ac87b8f0c7037e2d5c06f2f022a SHA256: e037c05f94a30990518d42beede5f276645051ae4861d0d49a85ef61203f13ba [stretch] Package: pynast Version: 1.2.2-2 Installed-Size: 308 Maintainer: Debian Med Packaging Team Architecture: all Replaces: python-pynast Provides: python-pynast Depends: python (<< 2.8), python (>= 2.7), python:any (>= 2.6.6-7~), libjs-jquery, libjs-underscore Recommends: blast2, clustalw, mafft, muscle, python-mpi4py Suggests: uclust Conflicts: python-pynast Description: alignment of short DNA sequences Homepage: http://pynast.sourceforge.net/ Description-md5: f1947c7dd3400e1226d490b83db3a814 Section: python Priority: extra Filename: pool/main/p/pynast/pynast_1.2.2-2_all.deb Size: 83450 MD5sum: f9aa3e84b50a9248c2e19d2439b7c88f SHA256: 87ab9020049fe1af4e590fc70c98a6f5ea5af51f8672cffe5a6a0b464520e5ca Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt pynast=1.2.2-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt pynast=1.2.2-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpi81no4ol 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpi81no4ol 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpi81no4ol/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-get', 'update'] 0m3.3s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Ign http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main Translation-en Hit http://deb.debian.org jessie/main amd64 Packages Reading package lists... W: GPG error: http://deb.debian.org jessie Release: The following signatures were invalid: KEYEXPIRED 1668891673 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s INFO: Running scripts post_setup 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_dummy_users'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_dummy_users'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_forbid_home'] 0m5.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_forbid_home'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_zz_backports'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/post_setup_zz_backports'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.5s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat 0m5.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpi81no4ol'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpi81no4ol'] 0m6.0s INFO: Running scripts is_testable 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s INFO: Running scripts pre_test 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_test_root_password'] 0m6.1s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_test_root_password'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-cache', 'show', '--no-all-versions', 'pynast'] 0m6.1s DUMP: Package: pynast Version: 1.2.2-1 Installed-Size: 324 Maintainer: Debian Med Packaging Team Architecture: all Replaces: python-pynast Provides: python-pynast Depends: python (>= 2.7), python (<< 2.8), libjs-jquery, libjs-underscore Recommends: blast2, clustalw, mafft, muscle, python-mpi4py Suggests: uclust Conflicts: python-pynast Description-en: alignment of short DNA sequences The package provices a reimplementation of the Nearest Alignment Space Termination tool in Python. It was prepared for next generation sequencers. . Given a set of sequences and a template alignment, PyNAST will align the input sequences against the template alignment, and return a multiple sequence alignment which contains the same number of positions (or columns) as the template alignment. This facilitates the analysis of new sequences in the context of existing alignments, and additional data derived from existing alignments such as phylogenetic trees. Because any protein or nucleic acid sequences and template alignments can be provided, PyNAST is not limited to the analysis of 16s rDNA sequences. Description-md5: f1947c7dd3400e1226d490b83db3a814 Homepage: http://pynast.sourceforge.net/ Section: python Priority: extra Filename: pool/main/p/pynast/pynast_1.2.2-1_all.deb Size: 81106 MD5sum: 2772563b7ed81219f7b367146b848476 SHA1: f4ec9fafdf129ac87b8f0c7037e2d5c06f2f022a SHA256: e037c05f94a30990518d42beede5f276645051ae4861d0d49a85ef61203f13ba 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-cache', 'show', '--no-all-versions', 'pynast'] 0m6.1s INFO: apt-cache knows about the following packages: pynast 0m6.1s INFO: Running scripts pre_install 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_database-server'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_database-server'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-cache', 'policy'] 0m6.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-cache', 'policy'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-cache', 'policy', 'pynast'] 0m6.2s DUMP: pynast: Installed: (none) Candidate: 1.2.2-1 Version table: 1.2.2-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-cache', 'policy', 'pynast'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-get', '-y', 'install', 'pynast'] 0m6.6s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: blast2 ca-certificates clustalw file ifupdown iproute2 isc-dhcp-client isc-dhcp-common javascript-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libauthen-sasl-perl libbsd0 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libgmp10 libgnutls-deb0-28 libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libjs-jquery libjs-underscore liblog-message-perl liblog-message-simple-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnuma1 libopenmpi1.6 libp11-kit0 libpackage-constants-perl libparams-util-perl libpciaccess0 libpod-latex-perl libpod-readme-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libruby2.1 libsoftware-license-perl libsqlite3-0 libssl1.0.0 libsub-exporter-perl libsub-install-perl libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 libxtables10 libyaml-0-2 lynx lynx-cur mafft mime-support mpi-default-bin muscle ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-modules python python-minimal python-mpi4py python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration sgml-base xml-core Suggested packages: libvibrant6b ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 clustalx seaview ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd apache2 lighttpd httpd libdigest-hmac-perl libgssapi-perl blcr-dkms gnutls-bin libdata-dump-perl libhwloc-contrib-plugins libcrypt-ssleay-perl libmime-base64-perl pciutils libauthen-ntlm-perl opencl-icd gfortran openmpi-checkpoint perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl uclust python-doc python-tk python-numpy python2.7-doc binutils binfmt-support ri ruby-dev bundler sgml-base-doc debhelper Recommended packages: libarchive-tar-perl The following NEW packages will be installed: blast2 ca-certificates clustalw file ifupdown iproute2 isc-dhcp-client isc-dhcp-common javascript-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libauthen-sasl-perl libbsd0 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libgmp10 libgnutls-deb0-28 libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libjs-jquery libjs-underscore liblog-message-perl liblog-message-simple-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnuma1 libopenmpi1.6 libp11-kit0 libpackage-constants-perl libparams-util-perl libpciaccess0 libpod-latex-perl libpod-readme-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libruby2.1 libsoftware-license-perl libsqlite3-0 libssl1.0.0 libsub-exporter-perl libsub-install-perl libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 libxtables10 libyaml-0-2 lynx lynx-cur mafft mime-support mpi-default-bin muscle ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-modules pynast python python-minimal python-mpi4py python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration sgml-base xml-core 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 36.7 MB of archives. After this operation, 158 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgdbm3 libssl1.0.0 libgmp10 libnettle4 libhogweed2 libffi6 libp11-kit0 libtasn1-6 libgnutls-deb0-28 libidn11 libmagic1 libsqlite3-0 libxml2 perl-modules perl libpython2.7-minimal python2.7-minimal python-minimal mime-support libexpat1 libpython2.7-stdlib python2.7 libpython-stdlib python libatm1 libbsd0 libisc-export95 libdns-export100 libquadmath0 libgfortran3 libisccfg-export90 libirs-export91 libltdl7 ncbi-data libncbi6 libnuma1 libpciaccess0 libyaml-0-2 sgml-base libhwloc5 ocl-icd-libopencl1 iproute2 ifupdown isc-dhcp-common isc-dhcp-client libxtables10 netbase file blast2 openssl ca-certificates clustalw javascript-common libalgorithm-c3-perl libarchive-extract-perl libauthen-sasl-perl libcgi-pm-perl libfcgi-perl libcgi-fast-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libparams-util-perl libsub-install-perl libdata-optlist-perl libmro-compat-perl libsub-exporter-perl libdata-section-perl libencode-locale-perl libtimedate-perl libhttp-date-perl libfile-listing-perl libfont-afm-perl liburi-perl libhtml-tagset-perl libhtml-parser-perl libio-html-perl liblwp-mediatypes-perl libhttp-message-perl libhtml-form-perl libhtml-tree-perl libhtml-format-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libjs-jquery libjs-underscore liblog-message-perl liblog-message-simple-perl libnet-http-perl libwww-robotrules-perl libwww-perl liblwp-protocol-https-perl libnet-smtp-ssl-perl libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libpackage-constants-perl libpod-latex-perl libregexp-common-perl libpod-readme-perl libtext-template-perl libsoftware-license-perl libterm-ui-perl libtext-soundex-perl mafft muscle rename rubygems-integration libruby2.1 ruby2.1 ruby xml-core libhwloc-plugins libibverbs1 libopenmpi1.6 lynx-cur lynx openmpi-common openmpi-bin mpi-default-bin pynast python-mpi4py E: There are problems and -y was used without --force-yes 0m6.6s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpi81no4ol', 'apt-get', '-y', 'install', 'pynast'] Reading package lists... Building dependency tree... The following extra packages will be installed: blast2 ca-certificates clustalw file ifupdown iproute2 isc-dhcp-client isc-dhcp-common javascript-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libauthen-sasl-perl libbsd0 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libgmp10 libgnutls-deb0-28 libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libjs-jquery libjs-underscore liblog-message-perl liblog-message-simple-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnuma1 libopenmpi1.6 libp11-kit0 libpackage-constants-perl libparams-util-perl libpciaccess0 libpod-latex-perl libpod-readme-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libruby2.1 libsoftware-license-perl libsqlite3-0 libssl1.0.0 libsub-exporter-perl libsub-install-perl libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 libxtables10 libyaml-0-2 lynx lynx-cur mafft mime-support mpi-default-bin muscle ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-modules python python-minimal python-mpi4py python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration sgml-base xml-core Suggested packages: libvibrant6b ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 clustalx seaview ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd apache2 lighttpd httpd libdigest-hmac-perl libgssapi-perl blcr-dkms gnutls-bin libdata-dump-perl libhwloc-contrib-plugins libcrypt-ssleay-perl libmime-base64-perl pciutils libauthen-ntlm-perl opencl-icd gfortran openmpi-checkpoint perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl uclust python-doc python-tk python-numpy python2.7-doc binutils binfmt-support ri ruby-dev bundler sgml-base-doc debhelper Recommended packages: libarchive-tar-perl The following NEW packages will be installed: blast2 ca-certificates clustalw file ifupdown iproute2 isc-dhcp-client isc-dhcp-common javascript-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libauthen-sasl-perl libbsd0 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libgmp10 libgnutls-deb0-28 libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libidn11 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libjs-jquery libjs-underscore liblog-message-perl liblog-message-simple-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnuma1 libopenmpi1.6 libp11-kit0 libpackage-constants-perl libparams-util-perl libpciaccess0 libpod-latex-perl libpod-readme-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libruby2.1 libsoftware-license-perl libsqlite3-0 libssl1.0.0 libsub-exporter-perl libsub-install-perl libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml2 libxtables10 libyaml-0-2 lynx lynx-cur mafft mime-support mpi-default-bin muscle ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-modules pynast python python-minimal python-mpi4py python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration sgml-base xml-core 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 36.7 MB of archives. After this operation, 158 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgdbm3 libssl1.0.0 libgmp10 libnettle4 libhogweed2 libffi6 libp11-kit0 libtasn1-6 libgnutls-deb0-28 libidn11 libmagic1 libsqlite3-0 libxml2 perl-modules perl libpython2.7-minimal python2.7-minimal python-minimal mime-support libexpat1 libpython2.7-stdlib python2.7 libpython-stdlib python libatm1 libbsd0 libisc-export95 libdns-export100 libquadmath0 libgfortran3 libisccfg-export90 libirs-export91 libltdl7 ncbi-data libncbi6 libnuma1 libpciaccess0 libyaml-0-2 sgml-base libhwloc5 ocl-icd-libopencl1 iproute2 ifupdown isc-dhcp-common isc-dhcp-client libxtables10 netbase file blast2 openssl ca-certificates clustalw javascript-common libalgorithm-c3-perl libarchive-extract-perl libauthen-sasl-perl libcgi-pm-perl libfcgi-perl libcgi-fast-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libparams-util-perl libsub-install-perl libdata-optlist-perl libmro-compat-perl libsub-exporter-perl libdata-section-perl libencode-locale-perl libtimedate-perl libhttp-date-perl libfile-listing-perl libfont-afm-perl liburi-perl libhtml-tagset-perl libhtml-parser-perl libio-html-perl liblwp-mediatypes-perl libhttp-message-perl libhtml-form-perl libhtml-tree-perl libhtml-format-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libjs-jquery libjs-underscore liblog-message-perl liblog-message-simple-perl libnet-http-perl libwww-robotrules-perl libwww-perl liblwp-protocol-https-perl libnet-smtp-ssl-perl libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libpackage-constants-perl libpod-latex-perl libregexp-common-perl libpod-readme-perl libtext-template-perl libsoftware-license-perl libterm-ui-perl libtext-soundex-perl mafft muscle rename rubygems-integration libruby2.1 ruby2.1 ruby xml-core libhwloc-plugins libibverbs1 libopenmpi1.6 lynx-cur lynx openmpi-common openmpi-bin mpi-default-bin pynast python-mpi4py E: There are problems and -y was used without --force-yes 0m7.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/shm'] 0m7.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/shm'] 0m7.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/console'] 0m7.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/console'] 0m7.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/ptmx'] 0m7.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/ptmx'] 0m7.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/pts'] 0m7.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/dev/pts'] 0m7.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/proc'] 0m7.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpi81no4ol/proc'] 0m7.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpi81no4ol'] 0m7.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpi81no4ol'] 0m7.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpi81no4ol 0m7.1s ERROR: piuparts run ends. ret=1 End: 2023-01-02 08:04:00 GMT