Start: 2023-03-04 01:38:18 GMT [jessie] Package: r-other-bio3d Version: 1.1-5-1 Installed-Size: 16846 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.0.0-2) Suggests: r-cran-ncdf, r-cran-bigmemory, r-cran-rocr, mafft Description: GNU R package for biological structure analysis Homepage: http://thegrantlab.org/bio3d/ Description-md5: 5150a63a38e956e286904b0c1ebe5442 Tag: field::biology, field::biology:bioinformatics, field::biology:structural, implemented-in::r, interface::commandline, interface::x11, role::shared-lib, scope::application, use::analysing, use::comparing, use::viewing, works-with-format::TODO, works-with-format::plaintext, works-with::3dmodel Section: gnu-r Priority: optional Filename: pool/main/r/r-other-bio3d/r-other-bio3d_1.1-5-1_all.deb Size: 9459544 MD5sum: 2fda30ca0fe8c4137dfadbb0ffc8d7b6 SHA1: 5b4dff3964af5bec2e555917d4717445dec96d3f SHA256: e11ee1635ff880df9da3980d749d55d94069eaf2681166538ec18d0b32c125c7 [stretch] Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt r-other-bio3d=None 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt r-other-bio3d=None 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_223xkck 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_223xkck 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_223xkck', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_223xkck', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_223xkck/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_223xkck/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_223xkck/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-get', 'update'] 0m4.5s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Ign http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main Translation-en Hit http://deb.debian.org jessie/main amd64 Packages Reading package lists... W: GPG error: http://deb.debian.org jessie Release: The following signatures were invalid: KEYEXPIRED 1668891673 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.0s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.0s INFO: Running scripts post_setup 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_dummy_users'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_dummy_users'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_forbid_home'] 0m6.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_forbid_home'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_minimize'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_minimize'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_zz_backports'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/post_setup_zz_backports'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.2s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat 0m6.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_223xkck'] 0m6.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_223xkck'] 0m6.6s INFO: Running scripts is_testable 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/is_testable_uninstallable'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/is_testable_uninstallable'] 0m6.6s INFO: Running scripts pre_test 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_test_exceptions'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_test_exceptions'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_test_root_password'] 0m6.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_test_root_password'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-cache', 'show', '--no-all-versions', 'r-other-bio3d'] 0m6.7s DUMP: Package: r-other-bio3d Version: 1.1-5-1 Installed-Size: 16846 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.0.0-2) Suggests: r-cran-ncdf, r-cran-bigmemory, r-cran-rocr, mafft Description-en: GNU R package for biological structure analysis The bio3d package contains utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, and principal component analysis (PCA). In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Description-md5: 5150a63a38e956e286904b0c1ebe5442 Homepage: http://thegrantlab.org/bio3d/ Tag: field::biology, field::biology:bioinformatics, field::biology:structural, implemented-in::r, interface::commandline, interface::x11, role::shared-lib, scope::application, use::analysing, use::comparing, use::viewing, works-with-format::TODO, works-with-format::plaintext, works-with::3dmodel Section: gnu-r Priority: optional Filename: pool/main/r/r-other-bio3d/r-other-bio3d_1.1-5-1_all.deb Size: 9459544 MD5sum: 2fda30ca0fe8c4137dfadbb0ffc8d7b6 SHA1: 5b4dff3964af5bec2e555917d4717445dec96d3f SHA256: e11ee1635ff880df9da3980d749d55d94069eaf2681166538ec18d0b32c125c7 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-cache', 'show', '--no-all-versions', 'r-other-bio3d'] 0m6.7s INFO: apt-cache knows about the following packages: r-other-bio3d 0m6.7s INFO: Running scripts pre_install 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_database-server'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_database-server'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_exceptions'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_exceptions'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_extras'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_extras'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-cache', 'policy'] 0m6.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-cache', 'policy'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-cache', 'policy', 'r-other-bio3d'] 0m6.8s DUMP: r-other-bio3d: Installed: (none) Candidate: 1.1-5-1 Version table: 1.1-5-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-cache', 'policy', 'r-other-bio3d'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-get', '-y', 'install', 'r-other-bio3d'] 0m7.2s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-4.9 dbus dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-4.9 gcc gcc-4.9 gfortran gfortran-4.9 ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive-extract-perl libasan1 libatm1 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcap-ng0 libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libdata-optlist-perl libdata-section-perl libdatrie1 libdbus-1-3 libdns-export100 libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libfcgi-perl libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran-4.9-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgomp1 libgraphite2-3 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 libllvm3.5 liblog-message-perl liblog-message-simple-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libpackage-constants-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-util-perl libpciaccess0 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev libpod-latex-perl libpod-readme-perl libquadmath0 libreadline-dev libreadline6-dev libregexp-common-perl libsm6 libsoftware-license-perl libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libtcl8.5 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.5 libtsan0 libtxc-dxtn-s2tc0 libubsan0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev make manpages manpages-dev netbase openssl patch perl perl-modules r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended rename sgml-base shared-mime-info ucf unzip x11-common x11-utils x11-xserver-utils xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev Suggested packages: binutils-doc devscripts cpp-doc gcc-4.9-locales dbus-x11 debian-keyring g++-multilib g++-4.9-multilib gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-4.9-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-4.9-multilib gfortran-4.9-doc libgfortran3-dbg ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd libdigest-hmac-perl libgssapi-perl glibc-doc libdata-dump-perl libcrypt-ssleay-perl liblzma-doc ncurses-doc libmime-base64-perl pciutils readline-doc libstdc++-4.9-doc tcl8.5 tk8.5 libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl ess r-doc-info r-doc-pdf r-mathlib r-base-html debhelper texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo mozilla www-browser r-cran-ncdf r-cran-bigmemory r-cran-rocr mafft sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin Recommended packages: libarchive-tar-perl The following NEW packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-4.9 dbus dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-4.9 gcc gcc-4.9 gfortran gfortran-4.9 ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive-extract-perl libasan1 libatm1 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcap-ng0 libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libdata-optlist-perl libdata-section-perl libdatrie1 libdbus-1-3 libdns-export100 libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libfcgi-perl libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran-4.9-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgomp1 libgraphite2-3 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 libllvm3.5 liblog-message-perl liblog-message-simple-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libpackage-constants-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-util-perl libpciaccess0 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev libpod-latex-perl libpod-readme-perl libquadmath0 libreadline-dev libreadline6-dev libregexp-common-perl libsm6 libsoftware-license-perl libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libtcl8.5 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.5 libtsan0 libtxc-dxtn-s2tc0 libubsan0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev make manpages manpages-dev netbase openssl patch perl perl-modules r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-other-bio3d r-recommended rename sgml-base shared-mime-info ucf unzip x11-common x11-utils x11-xserver-utils xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 258 newly installed, 0 to remove and 0 not upgraded. Need to get 146 MB of archives. After this operation, 416 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgdbm3 libssl1.0.0 libbsd0 libedit2 libxml2 perl-modules perl libexpat1 libpng12-0 libfreetype6 ucf fonts-dejavu-core fontconfig-config libfontconfig1 fontconfig libasan1 libatm1 libatomic1 libpixman-1-0 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxext6 libxrender1 libcairo2 libcap-ng0 libcilkrts5 libgmp10 libisl10 libcloog-isl4 libdatrie1 libdbus-1-3 libisc-export95 libdns-export100 libdrm2 libpciaccess0 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libelf1 libffi6 libfontenc1 libquadmath0 libgfortran3 libllvm3.5 libgl1-mesa-dri libglapi-mesa libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxfixes3 libxdamage1 libxshmfence1 libxxf86vm1 libgl1-mesa-glx libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b x11-common libice6 libisccfg-export90 libirs-export91 libitm1 liblsan0 libmpfr4 libthai-data libthai0 libpango-1.0-0 libpangoft2-1.0-0 libpangocairo-1.0-0 libpaper1 libpcrecpp0 libsm6 libtcl8.5 libjbig0 libjpeg62-turbo libtiff5 libxft2 libxss1 libtk8.5 libtsan0 libubsan0 libxt6 libxmu6 libxpm4 libxaw7 libxcb-shape0 libxcomposite1 libxcursor1 libxi6 libxinerama1 libxmuu1 libxrandr2 libxtst6 libxv1 libxxf86dga1 sgml-base libmpc3 libtxc-dxtn-s2tc0 iproute2 ifupdown isc-dhcp-common isc-dhcp-client libxtables10 manpages netbase bzip2 dbus patch xz-utils autotools-dev binutils libc-dev-bin linux-libc-dev libc6-dev cpp-4.9 cpp libgcc-4.9-dev gcc-4.9 gcc libstdc++-4.9-dev g++-4.9 g++ make libtimedate-perl libdpkg-perl dpkg-dev build-essential bzip2-doc openssl ca-certificates cdbs libfakeroot fakeroot libgfortran-4.9-dev gfortran-4.9 gfortran libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive-extract-perl libauthen-sasl-perl libblas-common libblas3 libblas-dev libbz2-dev libcgi-pm-perl libfcgi-perl libcgi-fast-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libparams-util-perl libsub-install-perl libdata-optlist-perl libmro-compat-perl libsub-exporter-perl libdata-section-perl libencode-locale-perl libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libhttp-date-perl libfile-listing-perl shared-mime-info libfile-mimeinfo-perl libfont-afm-perl libglib2.0-data liburi-perl libhtml-tagset-perl libhtml-parser-perl libio-html-perl liblwp-mediatypes-perl libhttp-message-perl libhtml-form-perl libhtml-tree-perl libhtml-format-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libjpeg62-turbo-dev libjpeg-dev liblapack3 liblapack-dev liblog-message-perl liblog-message-simple-perl libnet-http-perl libwww-robotrules-perl libwww-perl liblwp-protocol-https-perl liblzma-dev libnet-smtp-ssl-perl libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libtinfo-dev libncurses5-dev libxml-parser-perl libxml-twig-perl libnet-dbus-perl libpackage-constants-perl libpaper-utils libpcre3-dev zlib1g-dev libpng12-dev libpod-latex-perl libregexp-common-perl libpod-readme-perl libreadline6-dev libreadline-dev libtext-template-perl libsoftware-license-perl libterm-ui-perl libtext-soundex-perl libtie-ixhash-perl libx11-protocol-perl libxml-xpathengine-perl manpages-dev zip unzip xdg-utils r-base-core r-base-dev r-cran-boot r-cran-mass r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-matrix r-cran-nlme r-cran-mgcv r-cran-nnet r-cran-survival r-cran-rpart r-cran-spatial r-doc-html r-other-bio3d r-recommended rename x11-utils x11-xserver-utils xdg-user-dirs xml-core E: There are problems and -y was used without --force-yes 0m7.2s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmp_223xkck', 'apt-get', '-y', 'install', 'r-other-bio3d'] Reading package lists... Building dependency tree... The following extra packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-4.9 dbus dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-4.9 gcc gcc-4.9 gfortran gfortran-4.9 ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive-extract-perl libasan1 libatm1 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcap-ng0 libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libdata-optlist-perl libdata-section-perl libdatrie1 libdbus-1-3 libdns-export100 libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libfcgi-perl libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran-4.9-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgomp1 libgraphite2-3 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 libllvm3.5 liblog-message-perl liblog-message-simple-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libpackage-constants-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-util-perl libpciaccess0 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev libpod-latex-perl libpod-readme-perl libquadmath0 libreadline-dev libreadline6-dev libregexp-common-perl libsm6 libsoftware-license-perl libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libtcl8.5 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.5 libtsan0 libtxc-dxtn-s2tc0 libubsan0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev make manpages manpages-dev netbase openssl patch perl perl-modules r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended rename sgml-base shared-mime-info ucf unzip x11-common x11-utils x11-xserver-utils xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev Suggested packages: binutils-doc devscripts cpp-doc gcc-4.9-locales dbus-x11 debian-keyring g++-multilib g++-4.9-multilib gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-4.9-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-4.9-multilib gfortran-4.9-doc libgfortran3-dbg ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd libdigest-hmac-perl libgssapi-perl glibc-doc libdata-dump-perl libcrypt-ssleay-perl liblzma-doc ncurses-doc libmime-base64-perl pciutils readline-doc libstdc++-4.9-doc tcl8.5 tk8.5 libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl ess r-doc-info r-doc-pdf r-mathlib r-base-html debhelper texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo mozilla www-browser r-cran-ncdf r-cran-bigmemory r-cran-rocr mafft sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin Recommended packages: libarchive-tar-perl The following NEW packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-4.9 dbus dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-4.9 gcc gcc-4.9 gfortran gfortran-4.9 ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive-extract-perl libasan1 libatm1 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcap-ng0 libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libdata-optlist-perl libdata-section-perl libdatrie1 libdbus-1-3 libdns-export100 libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libfcgi-perl libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran-4.9-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgomp1 libgraphite2-3 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 libllvm3.5 liblog-message-perl liblog-message-simple-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libpackage-constants-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-util-perl libpciaccess0 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev libpod-latex-perl libpod-readme-perl libquadmath0 libreadline-dev libreadline6-dev libregexp-common-perl libsm6 libsoftware-license-perl libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libtcl8.5 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.5 libtsan0 libtxc-dxtn-s2tc0 libubsan0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev make manpages manpages-dev netbase openssl patch perl perl-modules r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-other-bio3d r-recommended rename sgml-base shared-mime-info ucf unzip x11-common x11-utils x11-xserver-utils xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 258 newly installed, 0 to remove and 0 not upgraded. Need to get 146 MB of archives. After this operation, 416 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgdbm3 libssl1.0.0 libbsd0 libedit2 libxml2 perl-modules perl libexpat1 libpng12-0 libfreetype6 ucf fonts-dejavu-core fontconfig-config libfontconfig1 fontconfig libasan1 libatm1 libatomic1 libpixman-1-0 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxext6 libxrender1 libcairo2 libcap-ng0 libcilkrts5 libgmp10 libisl10 libcloog-isl4 libdatrie1 libdbus-1-3 libisc-export95 libdns-export100 libdrm2 libpciaccess0 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libelf1 libffi6 libfontenc1 libquadmath0 libgfortran3 libllvm3.5 libgl1-mesa-dri libglapi-mesa libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxfixes3 libxdamage1 libxshmfence1 libxxf86vm1 libgl1-mesa-glx libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b x11-common libice6 libisccfg-export90 libirs-export91 libitm1 liblsan0 libmpfr4 libthai-data libthai0 libpango-1.0-0 libpangoft2-1.0-0 libpangocairo-1.0-0 libpaper1 libpcrecpp0 libsm6 libtcl8.5 libjbig0 libjpeg62-turbo libtiff5 libxft2 libxss1 libtk8.5 libtsan0 libubsan0 libxt6 libxmu6 libxpm4 libxaw7 libxcb-shape0 libxcomposite1 libxcursor1 libxi6 libxinerama1 libxmuu1 libxrandr2 libxtst6 libxv1 libxxf86dga1 sgml-base libmpc3 libtxc-dxtn-s2tc0 iproute2 ifupdown isc-dhcp-common isc-dhcp-client libxtables10 manpages netbase bzip2 dbus patch xz-utils autotools-dev binutils libc-dev-bin linux-libc-dev libc6-dev cpp-4.9 cpp libgcc-4.9-dev gcc-4.9 gcc libstdc++-4.9-dev g++-4.9 g++ make libtimedate-perl libdpkg-perl dpkg-dev build-essential bzip2-doc openssl ca-certificates cdbs libfakeroot fakeroot libgfortran-4.9-dev gfortran-4.9 gfortran libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive-extract-perl libauthen-sasl-perl libblas-common libblas3 libblas-dev libbz2-dev libcgi-pm-perl libfcgi-perl libcgi-fast-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libparams-util-perl libsub-install-perl libdata-optlist-perl libmro-compat-perl libsub-exporter-perl libdata-section-perl libencode-locale-perl libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libhttp-date-perl libfile-listing-perl shared-mime-info libfile-mimeinfo-perl libfont-afm-perl libglib2.0-data liburi-perl libhtml-tagset-perl libhtml-parser-perl libio-html-perl liblwp-mediatypes-perl libhttp-message-perl libhtml-form-perl libhtml-tree-perl libhtml-format-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libjpeg62-turbo-dev libjpeg-dev liblapack3 liblapack-dev liblog-message-perl liblog-message-simple-perl libnet-http-perl libwww-robotrules-perl libwww-perl liblwp-protocol-https-perl liblzma-dev libnet-smtp-ssl-perl libmailtools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libtinfo-dev libncurses5-dev libxml-parser-perl libxml-twig-perl libnet-dbus-perl libpackage-constants-perl libpaper-utils libpcre3-dev zlib1g-dev libpng12-dev libpod-latex-perl libregexp-common-perl libpod-readme-perl libreadline6-dev libreadline-dev libtext-template-perl libsoftware-license-perl libterm-ui-perl libtext-soundex-perl libtie-ixhash-perl libx11-protocol-perl libxml-xpathengine-perl manpages-dev zip unzip xdg-utils r-base-core r-base-dev r-cran-boot r-cran-mass r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-matrix r-cran-nlme r-cran-mgcv r-cran-nnet r-cran-survival r-cran-rpart r-cran-spatial r-doc-html r-other-bio3d r-recommended rename x11-utils x11-xserver-utils xdg-user-dirs xml-core E: There are problems and -y was used without --force-yes 0m7.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/shm'] 0m7.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/shm'] 0m7.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/console'] 0m7.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/console'] 0m7.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/ptmx'] 0m7.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/ptmx'] 0m7.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/pts'] 0m7.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/dev/pts'] 0m7.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/proc'] 0m7.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_223xkck/proc'] 0m7.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_223xkck'] 0m7.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_223xkck'] 0m7.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_223xkck 0m7.7s ERROR: piuparts run ends. ret=1 End: 2023-03-04 01:38:26 GMT