Start: 2023-01-29 19:07:52 GMT [jessie] Package: relion-bin+mpi+gui Source: relion Version: 1.3+dfsg-2 Installed-Size: 1361 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libfftw3-double3, libfltk1.3, libgcc1 (>= 1:4.1.1), libhwloc5, libopenmpi1.6, librelion+mpi+gui-1.3-1, libstdc++6 (>= 4.9), libx11-6, openmpi-gcc | openmpi-bin Conflicts: relion-bin, relion-bin+gui, relion-bin+mpi Description: parallel toolkit for 3D reconstructions in cryo-electron microscopy Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description-md5: c45f291e5e68464ccf6fbf15740cef16 Section: science Priority: optional Filename: pool/main/r/relion/relion-bin+mpi+gui_1.3+dfsg-2_amd64.deb Size: 234206 MD5sum: 6b27f63cf137d50250a00e1a746964da SHA1: adbfc5dc8918fe26ea54eebd8ff747455b4b39e0 SHA256: 0e9f06818d8581b96d1b746964815cf54448ab764c3259dd6a1d167d921a975e [stretch] Package: relion-bin+mpi+gui Source: relion (1.4+dfsg-2) Version: 1.4+dfsg-2+b2 Installed-Size: 1406 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libfftw3-double3 (>= 3.3.5), libfltk1.3, libgcc1 (>= 1:3.0), libopenmpi2, librelion+mpi+gui-1.4-1, libstdc++6 (>= 5.2), libx11-6, openmpi-gcc | openmpi-bin Conflicts: relion-bin, relion-bin+gui, relion-bin+mpi Description: parallel toolkit for 3D reconstructions in cryo-electron microscopy Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description-md5: c45f291e5e68464ccf6fbf15740cef16 Section: science Priority: optional Filename: pool/main/r/relion/relion-bin+mpi+gui_1.4+dfsg-2+b2_amd64.deb Size: 244926 MD5sum: 64feed86e6abbe3f01e2c1ab2346097b SHA256: bbc45ae7bfa8fb54ffe52876703b67dba8329c240cf5c040ac4a5234dca00546 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt relion-bin+mpi+gui=1.4+dfsg-2+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt relion-bin+mpi+gui=1.4+dfsg-2+b2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpe5gnhbxg 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpe5gnhbxg 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpe5gnhbxg/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-get', 'update'] 0m3.3s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Ign http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main Translation-en Hit http://deb.debian.org jessie/main amd64 Packages Reading package lists... W: GPG error: http://deb.debian.org jessie Release: The following signatures were invalid: KEYEXPIRED 1668891673 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s INFO: Running scripts post_setup 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_minimize'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_minimize'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat 0m5.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg'] 0m5.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg'] 0m5.4s INFO: Running scripts is_testable 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s INFO: Running scripts pre_test 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_test_root_password'] 0m5.5s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_test_root_password'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-cache', 'show', '--no-all-versions', 'relion-bin+mpi+gui'] 0m5.5s DUMP: Package: relion-bin+mpi+gui Source: relion Version: 1.3+dfsg-2 Installed-Size: 1361 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libfftw3-double3, libfltk1.3, libgcc1 (>= 1:4.1.1), libhwloc5, libopenmpi1.6, librelion+mpi+gui-1.3-1, libstdc++6 (>= 4.9), libx11-6, openmpi-gcc | openmpi-bin Conflicts: relion-bin, relion-bin+gui, relion-bin+mpi Description-en: parallel toolkit for 3D reconstructions in cryo-electron microscopy RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . relion-bin+mpi+gui provides the serial and parallel command-line tools as well as the graphical user interface. Description-md5: c45f291e5e68464ccf6fbf15740cef16 Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Section: science Priority: optional Filename: pool/main/r/relion/relion-bin+mpi+gui_1.3+dfsg-2_amd64.deb Size: 234206 MD5sum: 6b27f63cf137d50250a00e1a746964da SHA1: adbfc5dc8918fe26ea54eebd8ff747455b4b39e0 SHA256: 0e9f06818d8581b96d1b746964815cf54448ab764c3259dd6a1d167d921a975e 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-cache', 'show', '--no-all-versions', 'relion-bin+mpi+gui'] 0m5.5s INFO: apt-cache knows about the following packages: relion-bin+mpi+gui 0m5.5s INFO: Running scripts pre_install 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-cache', 'policy'] 0m5.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-cache', 'policy'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-cache', 'policy', 'relion-bin+mpi+gui'] 0m5.5s DUMP: relion-bin+mpi+gui: Installed: (none) Candidate: 1.3+dfsg-2 Version table: 1.3+dfsg-2 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-cache', 'policy', 'relion-bin+mpi+gui'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-get', '-y', 'install', 'relion-bin+mpi+gui'] 0m5.7s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: fontconfig-config fonts-dejavu-core ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libexpat1 libfcgi-perl libfftw3-double3 libfltk1.3 libfontconfig1 libfreetype6 libgdbm3 libgfortran3 libgomp1 libhwloc-plugins libhwloc5 libibverbs1 libirs-export91 libisc-export95 libisccfg-export90 liblog-message-perl liblog-message-simple-perl libltdl7 libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libnuma1 libopenmpi1.6 libpackage-constants-perl libparams-util-perl libpciaccess0 libpng12-0 libpod-latex-perl libpod-readme-perl libquadmath0 libregexp-common-perl librelion+mpi+gui-1.3-1 libsoftware-license-perl libsub-exporter-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxinerama1 libxml2 libxrender1 libxtables10 netbase ocl-icd-libopencl1 openmpi-bin openmpi-common perl perl-modules rename sgml-base ucf xml-core Suggested packages: ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd blcr-dkms libfftw3-bin libfftw3-dev libhwloc-contrib-plugins pciutils opencl-icd gfortran openmpi-checkpoint perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl sgml-base-doc debhelper Recommended packages: libarchive-tar-perl The following NEW packages will be installed: fontconfig-config fonts-dejavu-core ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libexpat1 libfcgi-perl libfftw3-double3 libfltk1.3 libfontconfig1 libfreetype6 libgdbm3 libgfortran3 libgomp1 libhwloc-plugins libhwloc5 libibverbs1 libirs-export91 libisc-export95 libisccfg-export90 liblog-message-perl liblog-message-simple-perl libltdl7 libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libnuma1 libopenmpi1.6 libpackage-constants-perl libparams-util-perl libpciaccess0 libpng12-0 libpod-latex-perl libpod-readme-perl libquadmath0 libregexp-common-perl librelion+mpi+gui-1.3-1 libsoftware-license-perl libsub-exporter-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxinerama1 libxml2 libxrender1 libxtables10 netbase ocl-icd-libopencl1 openmpi-bin openmpi-common perl perl-modules relion-bin+mpi+gui rename sgml-base ucf xml-core 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 17.6 MB of archives. After this operation, 70.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgdbm3 libxml2 perl-modules perl libatm1 libisc-export95 libdns-export100 libexpat1 libgomp1 libfftw3-double3 libpng12-0 libfreetype6 ucf fonts-dejavu-core fontconfig-config libfontconfig1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxrender1 libxft2 libxinerama1 libfltk1.3 libquadmath0 libgfortran3 libisccfg-export90 libirs-export91 libltdl7 libnuma1 libpciaccess0 librelion+mpi+gui-1.3-1 sgml-base libhwloc5 ocl-icd-libopencl1 iproute2 ifupdown isc-dhcp-common isc-dhcp-client libxtables10 netbase libalgorithm-c3-perl libarchive-extract-perl libcgi-pm-perl libfcgi-perl libcgi-fast-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libparams-util-perl libsub-install-perl libdata-optlist-perl libmro-compat-perl libsub-exporter-perl libdata-section-perl liblog-message-perl liblog-message-simple-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libpackage-constants-perl libpod-latex-perl libregexp-common-perl libpod-readme-perl libtext-template-perl libsoftware-license-perl libterm-ui-perl libtext-soundex-perl libibverbs1 libopenmpi1.6 openmpi-common openmpi-bin relion-bin+mpi+gui rename xml-core libhwloc-plugins E: There are problems and -y was used without --force-yes 0m5.7s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg', 'apt-get', '-y', 'install', 'relion-bin+mpi+gui'] Reading package lists... Building dependency tree... The following extra packages will be installed: fontconfig-config fonts-dejavu-core ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libexpat1 libfcgi-perl libfftw3-double3 libfltk1.3 libfontconfig1 libfreetype6 libgdbm3 libgfortran3 libgomp1 libhwloc-plugins libhwloc5 libibverbs1 libirs-export91 libisc-export95 libisccfg-export90 liblog-message-perl liblog-message-simple-perl libltdl7 libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libnuma1 libopenmpi1.6 libpackage-constants-perl libparams-util-perl libpciaccess0 libpng12-0 libpod-latex-perl libpod-readme-perl libquadmath0 libregexp-common-perl librelion+mpi+gui-1.3-1 libsoftware-license-perl libsub-exporter-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxinerama1 libxml2 libxrender1 libxtables10 netbase ocl-icd-libopencl1 openmpi-bin openmpi-common perl perl-modules rename sgml-base ucf xml-core Suggested packages: ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd blcr-dkms libfftw3-bin libfftw3-dev libhwloc-contrib-plugins pciutils opencl-icd gfortran openmpi-checkpoint perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl sgml-base-doc debhelper Recommended packages: libarchive-tar-perl The following NEW packages will be installed: fontconfig-config fonts-dejavu-core ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libdata-optlist-perl libdata-section-perl libdns-export100 libexpat1 libfcgi-perl libfftw3-double3 libfltk1.3 libfontconfig1 libfreetype6 libgdbm3 libgfortran3 libgomp1 libhwloc-plugins libhwloc5 libibverbs1 libirs-export91 libisc-export95 libisccfg-export90 liblog-message-perl liblog-message-simple-perl libltdl7 libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libnuma1 libopenmpi1.6 libpackage-constants-perl libparams-util-perl libpciaccess0 libpng12-0 libpod-latex-perl libpod-readme-perl libquadmath0 libregexp-common-perl librelion+mpi+gui-1.3-1 libsoftware-license-perl libsub-exporter-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxinerama1 libxml2 libxrender1 libxtables10 netbase ocl-icd-libopencl1 openmpi-bin openmpi-common perl perl-modules relion-bin+mpi+gui rename sgml-base ucf xml-core 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 17.6 MB of archives. After this operation, 70.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgdbm3 libxml2 perl-modules perl libatm1 libisc-export95 libdns-export100 libexpat1 libgomp1 libfftw3-double3 libpng12-0 libfreetype6 ucf fonts-dejavu-core fontconfig-config libfontconfig1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxrender1 libxft2 libxinerama1 libfltk1.3 libquadmath0 libgfortran3 libisccfg-export90 libirs-export91 libltdl7 libnuma1 libpciaccess0 librelion+mpi+gui-1.3-1 sgml-base libhwloc5 ocl-icd-libopencl1 iproute2 ifupdown isc-dhcp-common isc-dhcp-client libxtables10 netbase libalgorithm-c3-perl libarchive-extract-perl libcgi-pm-perl libfcgi-perl libcgi-fast-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcr0 libparams-util-perl libsub-install-perl libdata-optlist-perl libmro-compat-perl libsub-exporter-perl libdata-section-perl liblog-message-perl liblog-message-simple-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libpackage-constants-perl libpod-latex-perl libregexp-common-perl libpod-readme-perl libtext-template-perl libsoftware-license-perl libterm-ui-perl libtext-soundex-perl libibverbs1 libopenmpi1.6 openmpi-common openmpi-bin relion-bin+mpi+gui rename xml-core libhwloc-plugins E: There are problems and -y was used without --force-yes 0m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/shm'] 0m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/shm'] 0m6.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/console'] 0m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/console'] 0m6.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/ptmx'] 0m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/ptmx'] 0m6.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/pts'] 0m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/dev/pts'] 0m6.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/proc'] 0m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg/proc'] 0m6.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg'] 0m6.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe5gnhbxg'] 0m6.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpe5gnhbxg 0m6.2s ERROR: piuparts run ends. ret=1 End: 2023-01-29 19:07:58 GMT