Start: 2018-11-14 14:40:09 UTC [jessie] Package: gbrowse-calign Source: gbrowse (2.54+dfsg-3) Version: 2.54+dfsg-3+b1 Installed-Size: 57 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.4), gbrowse Description: CAlign helper Homepage: http://www.gbrowse.org/ Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.54+dfsg-3+b1_amd64.deb Size: 34810 MD5sum: 9f5f235d6b276bcae5f39bb3c01417eb SHA1: d5a07945664593872747cce12b2c88903c753991 SHA256: 06647f021526dfcc3e7129c91bfc6a6c867fd80f7557a7aa2c91e05d9508aa7a [stretch] Package: gbrowse-calign Source: gbrowse Version: 2.56+dfsg-2 Installed-Size: 76 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.24.1-1), perlapi-5.24.1, libc6 (>= 2.4), gbrowse Description: CAlign helper Homepage: http://www.gbrowse.org/ Description-md5: 52106883c9df300bab833de801839ea2 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.56+dfsg-2_amd64.deb Size: 35848 MD5sum: b7465ab97d2c9802d3a2575cd6bd2ef1 SHA256: 2a63dd4137a9d137c55ab55172211c8043417a312272f90a74e6d4effb1c7052 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B reference-chroot-metadata.dat --apt gbrowse-calign=2.56+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.94~201810311635~0.93-14-gae52ab48 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B reference-chroot-metadata.dat --apt gbrowse-calign=2.56+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-8-amd64 #1 SMP Debian 4.9.130-2 (2018-10-27) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6Y0ouF 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6Y0ouF 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/proc'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/proc'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/pts'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/pts'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/ptmx'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/ptmx'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/console'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/console'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/shm'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/shm'] 0m2.3s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ jessie main 0m2.3s DEBUG: Created policy-rc.d and chmodded it. 0m2.3s DEBUG: Created resolv.conf. 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6Y0ouF/tmp/scripts/ 0m2.3s INFO: Running scripts post_chroot_unpack 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', 'update'] 0m4.5s DUMP: Ign http://mirror-ubc.debian.org jessie InRelease Hit http://mirror-ubc.debian.org jessie Release.gpg Hit http://mirror-ubc.debian.org jessie Release Hit http://mirror-ubc.debian.org jessie/main amd64 Packages Hit http://mirror-ubc.debian.org jessie/main Translation-en Reading package lists... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.0s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.0s INFO: Running scripts post_setup 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m6.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 0m6.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 0m6.7s INFO: Running scripts is_testable 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/is_testable_uninstallable'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/is_testable_uninstallable'] 0m6.7s INFO: Running scripts pre_test 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_test_exceptions'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_test_exceptions'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_test_root_password'] 0m6.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_test_root_password'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m6.8s DUMP: Package: gbrowse-calign Source: gbrowse (2.54+dfsg-3) Version: 2.54+dfsg-3+b1 Installed-Size: 57 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.4), gbrowse Description-en: CAlign helper This package provides the CAlign helper for use with Realign. It speeds up Smith-Waterman alignment. Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Homepage: http://www.gbrowse.org/ Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.54+dfsg-3+b1_amd64.deb Size: 34810 MD5sum: 9f5f235d6b276bcae5f39bb3c01417eb SHA1: d5a07945664593872747cce12b2c88903c753991 SHA256: 06647f021526dfcc3e7129c91bfc6a6c867fd80f7557a7aa2c91e05d9508aa7a 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m6.8s INFO: apt-cache knows about the following packages: gbrowse-calign 0m6.8s INFO: Running scripts pre_install 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_database-server'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_database-server'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_exceptions'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_exceptions'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_extras'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_extras'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy'] 0m6.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ jessie/main Translation-en 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy', 'gbrowse-calign'] 0m6.9s DUMP: gbrowse-calign: Installed: (none) Candidate: 2.54+dfsg-3+b1 Version table: 2.54+dfsg-3+b1 0 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy', 'gbrowse-calign'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-y', 'install', 'gbrowse-calign'] 1m12.1s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation gbrowse ghostscript graphviz gsfonts hmmer ifupdown infernal iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libasync-interrupt-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap-ng0 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdns-export100 libencode-locale-perl liberror-perl libev-perl libexpat1 libexporter-tiny-perl libfcgi-perl libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libperl5.20 libpixman-1-0 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl librole-tiny-perl librtmp1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsm6 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libterm-readkey-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvm-ec2-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf wise wise-data x11-common xdg-user-dirs xml-core Suggested packages: www-browser apache2-doc apache2-suexec-pristine apache2-suexec-custom filo groff-base gmap paml phylip libvibrant6b ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 bowtie-examples clustalx seaview dbus-x11 emboss-doc emboss-test embassy gbrowse-data libfile-nfslock-perl ghostscript-x graphviz-doc hmmer-doc ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd libevent-perl libio-async-perl libpoe-perl libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gnutls-bin krb5-doc krb5-user libdata-dump-perl libhtml-element-extended-perl libjasper-runtime liblcms2-utils libmime-base64-perl uuid libscalar-number-perl libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libmime-lite-perl libnet-jabber-perl libdevel-stacktrace-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl mustang-testdata libterm-readline-gnu-perl libterm-readline-perl-perl make man-browser groff libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python-doc python-tk python2.7-doc binutils binfmt-support ri ruby-dev bundler sgml-base-doc sqlite3-doc openssl-blacklist boxshade t-coffee-examples fsa pymol rasmol wise-doc debhelper Recommended packages: libgd-gd2-perl libstorable-perl libarchive-tar-perl The following NEW packages will be installed: amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation gbrowse gbrowse-calign ghostscript graphviz gsfonts hmmer ifupdown infernal iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libasync-interrupt-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap-ng0 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdns-export100 libencode-locale-perl liberror-perl libev-perl libexpat1 libexporter-tiny-perl libfcgi-perl libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libperl5.20 libpixman-1-0 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl librole-tiny-perl librtmp1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsm6 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libterm-readkey-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvm-ec2-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf wise wise-data x11-common xdg-user-dirs xml-core 0 upgraded, 385 newly installed, 0 to remove and 0 not upgraded. Need to get 191 MB of archives. After this operation, 976 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:2 http://mirror-ubc.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:3 http://mirror-ubc.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:4 http://mirror-ubc.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:5 http://mirror-ubc.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:6 http://mirror-ubc.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:7 http://mirror-ubc.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:8 http://mirror-ubc.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:9 http://mirror-ubc.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:10 http://mirror-ubc.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:11 http://mirror-ubc.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:12 http://mirror-ubc.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:13 http://mirror-ubc.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:14 http://mirror-ubc.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:15 http://mirror-ubc.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:16 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:17 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:18 http://mirror-ubc.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:19 http://mirror-ubc.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u4 [250 kB] Get:20 http://mirror-ubc.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:21 http://mirror-ubc.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:22 http://mirror-ubc.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:23 http://mirror-ubc.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:24 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:25 http://mirror-ubc.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:26 http://mirror-ubc.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:27 http://mirror-ubc.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:28 http://mirror-ubc.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:29 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:30 http://mirror-ubc.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:31 http://mirror-ubc.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:32 http://mirror-ubc.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:33 http://mirror-ubc.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:34 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:35 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:36 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:37 http://mirror-ubc.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:38 http://mirror-ubc.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u12 [1042 kB] Get:39 http://mirror-ubc.debian.org/debian/ jessie/main apache2-utils amd64 2.4.10-10+deb8u12 [196 kB] Get:40 http://mirror-ubc.debian.org/debian/ jessie/main apache2-data all 2.4.10-10+deb8u12 [163 kB] Get:41 http://mirror-ubc.debian.org/debian/ jessie/main apache2 amd64 2.4.10-10+deb8u12 [208 kB] Get:42 http://mirror-ubc.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:43 http://mirror-ubc.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:44 http://mirror-ubc.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:45 http://mirror-ubc.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:46 http://mirror-ubc.debian.org/debian/ jessie/main fonts-liberation all 1.07.4-1 [835 kB] Get:47 http://mirror-ubc.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:48 http://mirror-ubc.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:49 http://mirror-ubc.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:50 http://mirror-ubc.debian.org/debian/ jessie/main fonts-droid all 1:4.4.4r2-6 [3729 kB] Get:51 http://mirror-ubc.debian.org/debian/ jessie/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:52 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:53 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:54 http://mirror-ubc.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:55 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:56 http://mirror-ubc.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:57 http://mirror-ubc.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:58 http://mirror-ubc.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:59 http://mirror-ubc.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:60 http://mirror-ubc.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:61 http://mirror-ubc.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:62 http://mirror-ubc.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:63 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:64 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:65 http://mirror-ubc.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:66 http://mirror-ubc.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:67 http://mirror-ubc.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:68 http://mirror-ubc.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:69 http://mirror-ubc.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:70 http://mirror-ubc.debian.org/debian/ jessie/main libcupsimage2 amd64 1.7.5-11+deb8u2 [117 kB] Get:71 http://mirror-ubc.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:72 http://mirror-ubc.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:73 http://mirror-ubc.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:74 http://mirror-ubc.debian.org/debian/ jessie/main libcupsfilters1 amd64 1.0.61-5+deb8u3 [106 kB] Get:75 http://mirror-ubc.debian.org/debian/ jessie/main librtmp1 amd64 2.4+20150115.gita107cef-1+deb8u1 [60.0 kB] Get:76 http://mirror-ubc.debian.org/debian/ jessie/main libssh2-1 amd64 1.4.3-4.1+deb8u1 [125 kB] Get:77 http://mirror-ubc.debian.org/debian/ jessie/main libcurl3-gnutls amd64 7.38.0-4+deb8u11 [253 kB] Get:78 http://mirror-ubc.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:79 http://mirror-ubc.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:80 http://mirror-ubc.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:81 http://mirror-ubc.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:82 http://mirror-ubc.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:83 http://mirror-ubc.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:84 http://mirror-ubc.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:85 http://mirror-ubc.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:86 http://mirror-ubc.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:87 http://mirror-ubc.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:88 http://mirror-ubc.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:89 http://mirror-ubc.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:90 http://mirror-ubc.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:91 http://mirror-ubc.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:92 http://mirror-ubc.debian.org/debian/ jessie/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:93 http://mirror-ubc.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:94 http://mirror-ubc.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:95 http://mirror-ubc.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:96 http://mirror-ubc.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:97 http://mirror-ubc.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:98 http://mirror-ubc.debian.org/debian/ jessie/main mysql-common all 5.5.60-0+deb8u1 [75.4 kB] Get:99 http://mirror-ubc.debian.org/debian/ jessie/main libmysqlclient18 amd64 5.5.60-0+deb8u1 [671 kB] Get:100 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:101 http://mirror-ubc.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:102 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:103 http://mirror-ubc.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:104 http://mirror-ubc.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:105 http://mirror-ubc.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:106 http://mirror-ubc.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:107 http://mirror-ubc.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:108 http://mirror-ubc.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:109 http://mirror-ubc.debian.org/debian/ jessie/main libpq5 amd64 9.4.18-0+deb8u1 [128 kB] Get:110 http://mirror-ubc.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:111 http://mirror-ubc.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:112 http://mirror-ubc.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:113 http://mirror-ubc.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:114 http://mirror-ubc.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:115 http://mirror-ubc.debian.org/debian/ jessie/main libxslt1.1 amd64 1.1.28-2+deb8u3 [232 kB] Get:116 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:117 http://mirror-ubc.debian.org/debian/ jessie/main poppler-data all 0.4.7-1 [1491 kB] Get:118 http://mirror-ubc.debian.org/debian/ jessie/main sgml-base all 1.26+nmu4 [14.6 kB] Get:119 http://mirror-ubc.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:120 http://mirror-ubc.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:121 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:122 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:123 http://mirror-ubc.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:124 http://mirror-ubc.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:125 http://mirror-ubc.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:126 http://mirror-ubc.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u4 [60.5 kB] Get:127 http://mirror-ubc.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:128 http://mirror-ubc.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:129 http://mirror-ubc.debian.org/debian/ jessie/main bedtools amd64 2.21.0-1 [608 kB] Get:130 http://mirror-ubc.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:131 http://mirror-ubc.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:132 http://mirror-ubc.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:133 http://mirror-ubc.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:134 http://mirror-ubc.debian.org/debian/ jessie/main libbio-perl-run-perl all 1.6.9-2 [753 kB] Get:135 http://mirror-ubc.debian.org/debian/ jessie/main bioperl-run all 1.6.9-2 [44.0 kB] Get:136 http://mirror-ubc.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:137 http://mirror-ubc.debian.org/debian/ jessie/main bwa amd64 0.7.10-1 [169 kB] Get:138 http://mirror-ubc.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:139 http://mirror-ubc.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:140 http://mirror-ubc.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:141 http://mirror-ubc.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:142 http://mirror-ubc.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:143 http://mirror-ubc.debian.org/debian/ jessie/main dialign amd64 2.2.1-7 [135 kB] Get:144 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:145 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:146 http://mirror-ubc.debian.org/debian/ jessie/main libhpdf-2.2.1 amd64 2.2.1-1.1 [322 kB] Get:147 http://mirror-ubc.debian.org/debian/ jessie/main emboss-lib amd64 6.6.0+dfsg-1 [3102 kB] Get:148 http://mirror-ubc.debian.org/debian/ jessie/main emboss-data all 6.6.0+dfsg-1 [60.8 MB] Get:149 http://mirror-ubc.debian.org/debian/ jessie/main emboss amd64 6.6.0+dfsg-1 [1023 kB] Get:150 http://mirror-ubc.debian.org/debian/ jessie/main exonerate amd64 2.2.0-6 [3053 kB] Get:151 http://mirror-ubc.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:152 http://mirror-ubc.debian.org/debian/ jessie/main libbio-graphics-perl all 2.39-2 [606 kB] Get:153 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-session-perl all 4.48-1+deb8u1 [119 kB] Get:154 http://mirror-ubc.debian.org/debian/ jessie/main libjson-perl all 2.61-1 [84.7 kB] Get:155 http://mirror-ubc.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:156 http://mirror-ubc.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:157 http://mirror-ubc.debian.org/debian/ jessie/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:158 http://mirror-ubc.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:159 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:160 http://mirror-ubc.debian.org/debian/ jessie/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:161 http://mirror-ubc.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:162 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:163 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:164 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:165 http://mirror-ubc.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:166 http://mirror-ubc.debian.org/debian/ jessie/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:167 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:168 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:169 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:170 http://mirror-ubc.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:171 http://mirror-ubc.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:172 http://mirror-ubc.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:173 http://mirror-ubc.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:174 http://mirror-ubc.debian.org/debian/ jessie/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:175 http://mirror-ubc.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:176 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:177 http://mirror-ubc.debian.org/debian/ jessie/main libterm-readkey-perl amd64 2.32-1+b1 [28.0 kB] Get:178 http://mirror-ubc.debian.org/debian/ jessie/main sqlite3 amd64 3.8.7.1-1+deb8u2 [101 kB] Get:179 http://mirror-ubc.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:180 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:181 http://mirror-ubc.debian.org/debian/ jessie/main libjs-prototype all 1.7.1-3 [44.3 kB] Get:182 http://mirror-ubc.debian.org/debian/ jessie/main libjs-scriptaculous all 1.9.0-2 [129 kB] Get:183 http://mirror-ubc.debian.org/debian/ jessie/main libanyevent-perl amd64 7.070-3 [404 kB] Get:184 http://mirror-ubc.debian.org/debian/ jessie/main libanyevent-cachedns-perl all 0.08-1 [7040 B] Get:185 http://mirror-ubc.debian.org/debian/ jessie/main libcommon-sense-perl amd64 3.73-2+b3 [23.7 kB] Get:186 http://mirror-ubc.debian.org/debian/ jessie/main libanyevent-http-perl all 2.21-1 [34.5 kB] Get:187 http://mirror-ubc.debian.org/debian/ jessie/main libstring-approx-perl amd64 3.27-1+b2 [40.8 kB] Get:188 http://mirror-ubc.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:189 http://mirror-ubc.debian.org/debian/ jessie/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:190 http://mirror-ubc.debian.org/debian/ jessie/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:191 http://mirror-ubc.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:192 http://mirror-ubc.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:193 http://mirror-ubc.debian.org/debian/ jessie/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:194 http://mirror-ubc.debian.org/debian/ jessie/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:195 http://mirror-ubc.debian.org/debian/ jessie/main libvm-ec2-perl all 1.28-1 [768 kB] Get:196 http://mirror-ubc.debian.org/debian/ jessie/main gbrowse all 2.54+dfsg-3 [2316 kB] Get:197 http://mirror-ubc.debian.org/debian/ jessie/main gbrowse-calign amd64 2.54+dfsg-3+b1 [34.8 kB] Get:198 http://mirror-ubc.debian.org/debian/ jessie/main libjbig2dec0 amd64 0.13-4~deb8u2 [60.2 kB] Get:199 http://mirror-ubc.debian.org/debian/ jessie/main libgs9-common all 9.06~dfsg-2+deb8u7 [1981 kB] Get:200 http://mirror-ubc.debian.org/debian/ jessie/main libgs9 amd64 9.06~dfsg-2+deb8u7 [1918 kB] Get:201 http://mirror-ubc.debian.org/debian/ jessie/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB] Get:202 http://mirror-ubc.debian.org/debian/ jessie/main ghostscript amd64 9.06~dfsg-2+deb8u7 [85.1 kB] Get:203 http://mirror-ubc.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:204 http://mirror-ubc.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:205 http://mirror-ubc.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:206 http://mirror-ubc.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:207 http://mirror-ubc.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:208 http://mirror-ubc.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:209 http://mirror-ubc.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:210 http://mirror-ubc.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:211 http://mirror-ubc.debian.org/debian/ jessie/main infernal amd64 1.1.1-2 [1862 kB] Get:212 http://mirror-ubc.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:213 http://mirror-ubc.debian.org/debian/ jessie/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:214 http://mirror-ubc.debian.org/debian/ jessie/main liberror-perl all 0.17-1.1 [22.4 kB] Get:215 http://mirror-ubc.debian.org/debian/ jessie/main libipc-sharelite-perl amd64 0.17-3+b2 [24.9 kB] Get:216 http://mirror-ubc.debian.org/debian/ jessie/main libcache-cache-perl all 1.07-2 [76.2 kB] Get:217 http://mirror-ubc.debian.org/debian/ jessie/main libace-perl amd64 1.92-3+b1 [310 kB] Get:218 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:219 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:220 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:221 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-munkres-perl all 0.08-2 [12.5 kB] Get:222 http://mirror-ubc.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u11 [1362 B] Get:223 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-symdump-perl all 2.12-1 [17.1 kB] Get:224 http://mirror-ubc.debian.org/debian/ jessie/main libapache2-mod-perl2 amd64 2.0.9~1624218-2+deb8u2 [903 kB] Get:225 http://mirror-ubc.debian.org/debian/ jessie/main libapache-dbi-perl all 1.12-1 [54.6 kB] Get:226 http://mirror-ubc.debian.org/debian/ jessie/main libapache2-reload-perl all 0.12-3 [17.3 kB] Get:227 http://mirror-ubc.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:228 http://mirror-ubc.debian.org/debian/ jessie/main libclass-method-modifiers-perl all 2.11-1 [18.5 kB] Get:229 http://mirror-ubc.debian.org/debian/ jessie/main libsub-exporter-progressive-perl all 0.001011-1 [7748 B] Get:230 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-globaldestruction-perl all 0.13-1 [8676 B] Get:231 http://mirror-ubc.debian.org/debian/ jessie/main libparams-classify-perl amd64 0.013-4+b2 [24.1 kB] Get:232 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-runtime-perl all 0.014-1 [17.9 kB] Get:233 http://mirror-ubc.debian.org/debian/ jessie/main libimport-into-perl all 1.002004-1 [11.5 kB] Get:234 http://mirror-ubc.debian.org/debian/ jessie/main librole-tiny-perl all 1.003004-1 [19.4 kB] Get:235 http://mirror-ubc.debian.org/debian/ jessie/main libstrictures-perl all 1.005005-1 [13.5 kB] Get:236 http://mirror-ubc.debian.org/debian/ jessie/main libmoo-perl all 1.006001-1 [62.7 kB] Get:237 http://mirror-ubc.debian.org/debian/ jessie/main libexporter-tiny-perl all 0.038-2 [28.7 kB] Get:238 http://mirror-ubc.debian.org/debian/ jessie/main libtype-tiny-perl all 1.000004-1 [269 kB] Get:239 http://mirror-ubc.debian.org/debian/ jessie/main libarray-compare-perl all 2.11-1 [14.2 kB] Get:240 http://mirror-ubc.debian.org/debian/ jessie/main libasync-interrupt-perl amd64 1.20-1+b1 [33.8 kB] Get:241 http://mirror-ubc.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:242 http://mirror-ubc.debian.org/debian/ jessie/main libb-hooks-op-check-perl amd64 0.19-2+b1 [11.3 kB] Get:243 http://mirror-ubc.debian.org/debian/ jessie/main liblexical-sealrequirehints-perl amd64 0.007-1+b2 [14.4 kB] Get:244 http://mirror-ubc.debian.org/debian/ jessie/main libbareword-filehandles-perl amd64 0.003-1+b2 [8922 B] Get:245 http://mirror-ubc.debian.org/debian/ jessie/main libbio-asn1-entrezgene-perl all 1.700-1 [40.9 kB] Get:246 http://mirror-ubc.debian.org/debian/ jessie/main libstaden-read1 amd64 1.13.7-1 [260 kB] Get:247 http://mirror-ubc.debian.org/debian/ jessie/main libbio-scf-perl amd64 1.03-2+b1 [21.3 kB] Get:248 http://mirror-ubc.debian.org/debian/ jessie/main libcarp-clan-perl all 6.04-1 [15.8 kB] Get:249 http://mirror-ubc.debian.org/debian/ jessie/main libbit-vector-perl amd64 7.3-1+b2 [146 kB] Get:250 http://mirror-ubc.debian.org/debian/ jessie/main libbsd-resource-perl amd64 1.2907-1+b2 [33.1 kB] Get:251 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:252 http://mirror-ubc.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:253 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:254 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:255 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:256 http://mirror-ubc.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:257 http://mirror-ubc.debian.org/debian/ jessie/main libclass-xsaccessor-perl amd64 1.19-2+b4 [39.0 kB] Get:258 http://mirror-ubc.debian.org/debian/ jessie/main libclone-perl amd64 0.37-1+b1 [14.2 kB] Get:259 http://mirror-ubc.debian.org/debian/ jessie/main libconvert-binary-c-perl amd64 0.76-3+b2 [274 kB] Get:260 http://mirror-ubc.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:261 http://mirror-ubc.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:262 http://mirror-ubc.debian.org/debian/ jessie/main libcrypt-rc4-perl all 2.02-2 [8150 B] Get:263 http://mirror-ubc.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:264 http://mirror-ubc.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:265 http://mirror-ubc.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:266 http://mirror-ubc.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:267 http://mirror-ubc.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:268 http://mirror-ubc.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:269 http://mirror-ubc.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:270 http://mirror-ubc.debian.org/debian/ jessie/main libdate-calc-perl all 6.3-2 [194 kB] Get:271 http://mirror-ubc.debian.org/debian/ jessie/main libdate-calc-xs-perl amd64 6.3-2 [54.0 kB] Get:272 http://mirror-ubc.debian.org/debian/ jessie/main libdate-manip-perl all 6.47-1 [923 kB] Get:273 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-mysql-perl amd64 4.028-2+deb8u2 [119 kB] Get:274 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-pg-perl amd64 3.4.2-1 [203 kB] Get:275 http://mirror-ubc.debian.org/debian/ jessie/main libpadwalker-perl amd64 1.98-1+b1 [20.7 kB] Get:276 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-caller-perl amd64 2.06-1+b2 [12.7 kB] Get:277 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-lexalias-perl amd64 0.05-1+b2 [9686 B] Get:278 http://mirror-ubc.debian.org/debian/ jessie/main libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:279 http://mirror-ubc.debian.org/debian/ jessie/main libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:280 http://mirror-ubc.debian.org/debian/ jessie/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:281 http://mirror-ubc.debian.org/debian/ jessie/main libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:282 http://mirror-ubc.debian.org/debian/ jessie/main libsvg-perl all 2.59-1 [75.2 kB] Get:283 http://mirror-ubc.debian.org/debian/ jessie/main libgd-svg-perl all 0.33-1 [64.8 kB] Get:284 http://mirror-ubc.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:285 http://mirror-ubc.debian.org/debian/ jessie/main libheap-perl all 0.80-2 [43.0 kB] Get:286 http://mirror-ubc.debian.org/debian/ jessie/main libgraph-perl all 1:0.96-1.1 [126 kB] Get:287 http://mirror-ubc.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:288 http://mirror-ubc.debian.org/debian/ jessie/main libipc-run-perl all 0.92-1+deb8u1 [101 kB] Get:289 http://mirror-ubc.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:290 http://mirror-ubc.debian.org/debian/ jessie/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:291 http://mirror-ubc.debian.org/debian/ jessie/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:292 http://mirror-ubc.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:293 http://mirror-ubc.debian.org/debian/ jessie/main libguard-perl amd64 1.022-2+b1 [16.5 kB] Get:294 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:295 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:296 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tableextract-perl all 2.11-1 [32.0 kB] Get:297 http://mirror-ubc.debian.org/debian/ jessie/main libindirect-perl amd64 0.33-1 [26.4 kB] Get:298 http://mirror-ubc.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:299 http://mirror-ubc.debian.org/debian/ jessie/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:300 http://mirror-ubc.debian.org/debian/ jessie/main libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:301 http://mirror-ubc.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:302 http://mirror-ubc.debian.org/debian/ jessie/main libjson-xs-perl amd64 2.340-1+b2 [85.9 kB] Get:303 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:304 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:305 http://mirror-ubc.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:306 http://mirror-ubc.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:307 http://mirror-ubc.debian.org/debian/ jessie/main libmath-derivative-perl all 0.01-6 [6214 B] Get:308 http://mirror-ubc.debian.org/debian/ jessie/main libmath-spline-perl all 0.02-1 [7992 B] Get:309 http://mirror-ubc.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:310 http://mirror-ubc.debian.org/debian/ jessie/main libmldbm-perl all 2.05-1 [18.3 kB] Get:311 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:312 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:313 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:314 http://mirror-ubc.debian.org/debian/ jessie/main libmultidimensional-perl amd64 0.010-1+b2 [8506 B] Get:315 http://mirror-ubc.debian.org/debian/ jessie/main libole-storage-lite-perl all 0.19-1 [26.1 kB] Get:316 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:317 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:318 http://mirror-ubc.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:319 http://mirror-ubc.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:320 http://mirror-ubc.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:321 http://mirror-ubc.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:322 http://mirror-ubc.debian.org/debian/ jessie/main libpostscript-perl all 0.06-2 [31.4 kB] Get:323 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:324 http://mirror-ubc.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:325 http://mirror-ubc.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:326 http://mirror-ubc.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:327 http://mirror-ubc.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:328 http://mirror-ubc.debian.org/debian/ jessie/main libsort-naturally-perl all 1.03-1 [13.9 kB] Get:329 http://mirror-ubc.debian.org/debian/ jessie/main libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:330 http://mirror-ubc.debian.org/debian/ jessie/main libunicode-map-perl amd64 0.112-11+b1 [146 kB] Get:331 http://mirror-ubc.debian.org/debian/ jessie/main libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:332 http://mirror-ubc.debian.org/debian/ jessie/main libsub-name-perl amd64 0.12-1 [12.1 kB] Get:333 http://mirror-ubc.debian.org/debian/ jessie/main libtree-dagnode-perl all 1.22-1 [59.5 kB] Get:334 http://mirror-ubc.debian.org/debian/ jessie/main libsvg-graph-perl all 0.02-2 [130 kB] Get:335 http://mirror-ubc.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:336 http://mirror-ubc.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:337 http://mirror-ubc.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:338 http://mirror-ubc.debian.org/debian/ jessie/main libtype-tiny-xs-perl amd64 0.010-1 [27.1 kB] Get:339 http://mirror-ubc.debian.org/debian/ jessie/main libxml-perl all 0.08-2 [113 kB] Get:340 http://mirror-ubc.debian.org/debian/ jessie/main libxml-regexp-perl all 0.04-1 [8370 B] Get:341 http://mirror-ubc.debian.org/debian/ jessie/main libxml-dom-perl all 1.44-1 [184 kB] Get:342 http://mirror-ubc.debian.org/debian/ jessie/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:343 http://mirror-ubc.debian.org/debian/ jessie/main libxml-dom-xpath-perl all 0.14-1 [9622 B] Get:344 http://mirror-ubc.debian.org/debian/ jessie/main libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:345 http://mirror-ubc.debian.org/debian/ jessie/main libxml-libxslt-perl amd64 1.92-1+b1 [47.7 kB] Get:346 http://mirror-ubc.debian.org/debian/ jessie/main libxml-sax-writer-perl all 0.54-1 [23.4 kB] Get:347 http://mirror-ubc.debian.org/debian/ jessie/main libxml-writer-perl all 0.625-1 [29.7 kB] Get:348 http://mirror-ubc.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:349 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-libyaml-perl amd64 0.41-6 [67.0 kB] Get:350 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-perl all 1.13-1 [69.7 kB] Get:351 http://mirror-ubc.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:352 http://mirror-ubc.debian.org/debian/ jessie/main maq amd64 0.7.1-5 [321 kB] Get:353 http://mirror-ubc.debian.org/debian/ jessie/main muscle amd64 1:3.8.31-1 [169 kB] Get:354 http://mirror-ubc.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:355 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:356 http://mirror-ubc.debian.org/debian/ jessie/main perl-doc all 5.20.2-3+deb8u11 [7347 kB] Get:357 http://mirror-ubc.debian.org/debian/ jessie/main perl-tk amd64 1:804.032-3+b3 [2031 kB] Get:358 http://mirror-ubc.debian.org/debian/ jessie/main phyml amd64 2:20120412-2 [939 kB] Get:359 http://mirror-ubc.debian.org/debian/ jessie/main poa amd64 2.0+20060928-3 [50.8 kB] Get:360 http://mirror-ubc.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:361 http://mirror-ubc.debian.org/debian/ jessie/main primer3 amd64 2.3.6-1 [168 kB] Get:362 http://mirror-ubc.debian.org/debian/ jessie/main probalign amd64 1.4-3 [67.9 kB] Get:363 http://mirror-ubc.debian.org/debian/ jessie/main probcons amd64 1.12-9 [196 kB] Get:364 http://mirror-ubc.debian.org/debian/ jessie/main proda amd64 1.0-8 [58.3 kB] Get:365 http://mirror-ubc.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:366 http://mirror-ubc.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:367 http://mirror-ubc.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:368 http://mirror-ubc.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:369 http://mirror-ubc.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:370 http://mirror-ubc.debian.org/debian/ jessie/main samtools amd64 0.1.19-1 [563 kB] Get:371 http://mirror-ubc.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:372 http://mirror-ubc.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:373 http://mirror-ubc.debian.org/debian/ jessie/main ssl-cert all 1.0.35 [20.9 kB] Get:374 http://mirror-ubc.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:375 http://mirror-ubc.debian.org/debian/ jessie/main tigr-glimmer amd64 3.02-3 [276 kB] Get:376 http://mirror-ubc.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:377 http://mirror-ubc.debian.org/debian/ jessie/main wise-data all 2.4.1-17 [108 kB] Get:378 http://mirror-ubc.debian.org/debian/ jessie/main wise amd64 2.4.1-17 [961 kB] Get:379 http://mirror-ubc.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:380 http://mirror-ubc.debian.org/debian/ jessie/main xml-core all 0.13+nmu2 [24.2 kB] Get:381 http://mirror-ubc.debian.org/debian/ jessie/main bowtie amd64 1.1.1-2 [1369 kB] Get:382 http://mirror-ubc.debian.org/debian/ jessie/main libev-perl amd64 4.18-1 [244 kB] Get:383 http://mirror-ubc.debian.org/debian/ jessie/main libset-scalar-perl all 1.29-1 [35.3 kB] Get:384 http://mirror-ubc.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:385 http://mirror-ubc.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 191 MB in 9s (19.5 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-13.1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libnettle4:amd64. Preparing to unpack .../libnettle4_2.7.1-5+deb8u2_amd64.deb ... Unpacking libnettle4:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libhogweed2:amd64. Preparing to unpack .../libhogweed2_2.7.1-5+deb8u2_amd64.deb ... Unpacking libhogweed2:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+deb8u1_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+deb8u1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.20.7-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.20.7-1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.2-3+deb8u3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.2-3+deb8u3) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.8-6+deb8u7_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-5+b1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-5+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.29-1+deb8u2_amd64.deb ... Unpacking libidn11:amd64 (1.29-1+deb8u2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.40+dfsg-1+deb8u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.22+15-2+deb8u4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u6_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Selecting previously unselected package perl-modules. Preparing to unpack .../perl-modules_5.20.2-3+deb8u11_all.deb ... Unpacking perl-modules (5.20.2-3+deb8u11) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl (5.20.2-3+deb8u11) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../libpython2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7-minimal (2.7.9-2+deb8u1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.9-1_amd64.deb ... Unpacking python-minimal (2.7.9-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.58_all.deb ... Unpacking mime-support (3.58) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../libpython2.7-stdlib_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7 (2.7.9-2+deb8u1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../libpython-stdlib_2.7.9-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.9-1) ... Setting up libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7-minimal (2.7.9-2+deb8u1) ... Setting up python-minimal (2.7.9-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9641 files and directories currently installed.) Preparing to unpack .../python_2.7.9-1_amd64.deb ... Unpacking python (2.7.9-1) ... Selecting previously unselected package libapr1:amd64. Preparing to unpack .../libapr1_1.5.1-3_amd64.deb ... Unpacking libapr1:amd64 (1.5.1-3) ... Selecting previously unselected package libaprutil1:amd64. Preparing to unpack .../libaprutil1_1.5.4-1_amd64.deb ... Unpacking libaprutil1:amd64 (1.5.4-1) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:amd64. Preparing to unpack .../libaprutil1-dbd-sqlite3_1.5.4-1_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Selecting previously unselected package libaprutil1-ldap:amd64. Preparing to unpack .../libaprutil1-ldap_1.5.4-1_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.5.4-1) ... Selecting previously unselected package liblua5.1-0:amd64. Preparing to unpack .../liblua5.1-0_5.1.5-7.1_amd64.deb ... Unpacking liblua5.1-0:amd64 (5.1.5-7.1) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../apache2-bin_2.4.10-10+deb8u12_amd64.deb ... Unpacking apache2-bin (2.4.10-10+deb8u12) ... Selecting previously unselected package apache2-utils. Preparing to unpack .../apache2-utils_2.4.10-10+deb8u12_amd64.deb ... Unpacking apache2-utils (2.4.10-10+deb8u12) ... Selecting previously unselected package apache2-data. Preparing to unpack .../apache2-data_2.4.10-10+deb8u12_all.deb ... Unpacking apache2-data (2.4.10-10+deb8u12) ... Selecting previously unselected package apache2. Preparing to unpack .../apache2_2.4.10-10+deb8u12_amd64.deb ... Unpacking apache2 (2.4.10-10+deb8u12) ... Selecting previously unselected package libpng12-0:amd64. Preparing to unpack .../libpng12-0_1.2.50-2+deb8u3_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.50-2+deb8u3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.5.2-3+deb8u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u2) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.34-1_all.deb ... Unpacking fonts-dejavu-core (2.34-1) ... Selecting previously unselected package fonts-liberation. Preparing to unpack .../fonts-liberation_1.07.4-1_all.deb ... Unpacking fonts-liberation (1.07.4-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.0-6.3+deb8u1_all.deb ... Unpacking fontconfig-config (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../fontconfig_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking fontconfig (2.11.0-6.3+deb8u1) ... Selecting previously unselected package fonts-droid. Preparing to unpack .../fonts-droid_1%3a4.4.4r2-6_all.deb ... Unpacking fonts-droid (1:4.4.4r2-6) ... Selecting previously unselected package libatm1:amd64. Preparing to unpack .../libatm1_1%3a2.5.1-1.5_amd64.deb ... Unpacking libatm1:amd64 (1:2.5.1-1.5) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../libavahi-common-data_0.6.31-5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.31-5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../libavahi-common3_0.6.31-5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.31-5) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../libdbus-1-3_1.8.22-0+deb8u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../libavahi-client3_0.6.31-5_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.31-5) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../libpixman-1-0_0.32.6-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.32.6-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-3+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.10-3+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-3+deb8u1_all.deb ... Unpacking libx11-data (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.2-3+deb8u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../libxcb-render0_1.10-3+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../libxcb-shm0_1.10-3+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../libxrender1_1%3a0.9.8-1+b1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.8-1+b1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../libcairo2_1.14.0-2.1+deb8u2_amd64.deb ... Unpacking libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Selecting previously unselected package libcap-ng0:amd64. Preparing to unpack .../libcap-ng0_0.7.4-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.4-2) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../libcups2_1.7.5-11+deb8u2_amd64.deb ... Unpacking libcups2:amd64 (1.7.5-11+deb8u2) ... Selecting previously unselected package libcupsimage2:amd64. Preparing to unpack .../libcupsimage2_1.7.5-11+deb8u2_amd64.deb ... Unpacking libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.3.1-12) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../libtiff5_4.0.3-12.3+deb8u5_amd64.deb ... Unpacking libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Selecting previously unselected package libcupsfilters1:amd64. Preparing to unpack .../libcupsfilters1_1.0.61-5+deb8u3_amd64.deb ... Unpacking libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../librtmp1_2.4+20150115.gita107cef-1+deb8u1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../libssh2-1_1.4.3-4.1+deb8u1_amd64.deb ... Unpacking libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../libcurl3-gnutls_7.38.0-4+deb8u11_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../libdatrie1_0.2.8-1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.8-1) ... Selecting previously unselected package libisc-export95. Preparing to unpack .../libisc-export95_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libdns-export100. Preparing to unpack .../libdns-export100_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libvpx1:amd64. Preparing to unpack .../libvpx1_1.3.0-3+deb8u1_amd64.deb ... Unpacking libvpx1:amd64 (1.3.0-3+deb8u1) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../libxpm4_1%3a3.5.12-0+deb8u1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Selecting previously unselected package libgd3:amd64. Preparing to unpack .../libgd3_2.1.0-5+deb8u11_amd64.deb ... Unpacking libgd3:amd64 (2.1.0-5+deb8u11) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_4.9.2-10+deb8u1_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.42.1-1+b1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.42.1-1+b1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgomp1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../libgraphite2-3_1.3.10-1~deb8u1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../libharfbuzz0b_0.9.35-2_amd64.deb ... Unpacking libharfbuzz0b:amd64 (0.9.35-2) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+7_all.deb ... Unpacking x11-common (1:7.7+7) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../libice6_2%3a1.0.9-1+b1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+b1) ... Selecting previously unselected package libijs-0.35:amd64. Preparing to unpack .../libijs-0.35_0.35-10_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-10) ... Selecting previously unselected package libisccfg-export90. Preparing to unpack .../libisccfg-export90_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libirs-export91. Preparing to unpack .../libirs-export91_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libjasper1:amd64. Preparing to unpack .../libjasper1_1.900.1-debian1-2.4+deb8u3_amd64.deb ... Unpacking libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../liblcms2-2_2.6-3+deb8u1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.6-3+deb8u1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../libltdl7_2.4.2-1.11+b1_amd64.deb ... Unpacking libltdl7:amd64 (2.4.2-1.11+b1) ... Selecting previously unselected package mysql-common. Preparing to unpack .../mysql-common_5.5.60-0+deb8u1_all.deb ... Unpacking mysql-common (5.5.60-0+deb8u1) ... Selecting previously unselected package libmysqlclient18:amd64. Preparing to unpack .../libmysqlclient18_5.5.60-0+deb8u1_amd64.deb ... Unpacking libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../ncbi-data_6.1.20120620-8_all.deb ... Unpacking ncbi-data (6.1.20120620-8) ... Selecting previously unselected package libncbi6:amd64. Preparing to unpack .../libncbi6_6.1.20120620-8_amd64.deb ... Unpacking libncbi6:amd64 (6.1.20120620-8) ... Selecting previously unselected package libossp-uuid16:amd64. Preparing to unpack .../libossp-uuid16_1.6.2-1.5+b1_amd64.deb ... Unpacking libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../libthai-data_0.1.21-1_all.deb ... Unpacking libthai-data (0.1.21-1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../libthai0_0.1.21-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.21-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../libpango-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../libpangoft2-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../libpangocairo-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../libpaper1_1.1.24+nmu4_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu4) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../libpq5_9.4.18-0+deb8u1_amd64.deb ... Unpacking libpq5:amd64 (9.4.18-0+deb8u1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.4-1+b1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.4-1+b1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../libxmu6_2%3a1.1.2-1_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-1) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../libxaw7_2%3a1.0.12-2+b1_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.12-2+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../libxft2_2.3.2-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../libxslt1.1_1.1.28-2+deb8u3_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../libyaml-0-2_0.1.6-3_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.6-3) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.7-1_all.deb ... Unpacking poppler-data (0.4.7-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../sgml-base_1.26+nmu4_all.deb ... Unpacking sgml-base (1.26+nmu4) ... Selecting previously unselected package iproute2. Preparing to unpack .../iproute2_3.16.0-2_amd64.deb ... Unpacking iproute2 (3.16.0-2) ... Selecting previously unselected package ifupdown. Preparing to unpack .../ifupdown_0.7.53.1_amd64.deb ... Unpacking ifupdown (0.7.53.1) ... Selecting previously unselected package isc-dhcp-common. Preparing to unpack .../isc-dhcp-common_4.3.1-6+deb8u3_amd64.deb ... Unpacking isc-dhcp-common (4.3.1-6+deb8u3) ... Selecting previously unselected package isc-dhcp-client. Preparing to unpack .../isc-dhcp-client_4.3.1-6+deb8u3_amd64.deb ... Unpacking isc-dhcp-client (4.3.1-6+deb8u3) ... Selecting previously unselected package libxtables10. Preparing to unpack .../libxtables10_1.4.21-2+b1_amd64.deb ... Unpacking libxtables10 (1.4.21-2+b1) ... Selecting previously unselected package netbase. Preparing to unpack .../archives/netbase_5.3_all.deb ... Unpacking netbase (5.3) ... Selecting previously unselected package dbus. Preparing to unpack .../dbus_1.8.22-0+deb8u1_amd64.deb ... Unpacking dbus (1.8.22-0+deb8u1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2+deb8u4_amd64.deb ... Unpacking file (1:5.22+15-2+deb8u4) ... Selecting previously unselected package krb5-locales. Preparing to unpack .../krb5-locales_1.12.1+dfsg-19+deb8u4_all.deb ... Unpacking krb5-locales (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package amap-align. Preparing to unpack .../amap-align_2.2-4_amd64.deb ... Unpacking amap-align (2.2-4) ... Selecting previously unselected package bedtools. Preparing to unpack .../bedtools_2.21.0-1_amd64.deb ... Unpacking bedtools (2.21.0-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../libdata-stag-perl_0.13-1_all.deb ... Unpacking libdata-stag-perl (0.13-1) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../libbio-perl-perl_1.6.924-1_all.deb ... Unpacking libbio-perl-perl (1.6.924-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../bioperl_1.6.924-1_all.deb ... Unpacking bioperl (1.6.924-1) ... Selecting previously unselected package libbio-perl-run-perl. Preparing to unpack .../libbio-perl-run-perl_1.6.9-2_all.deb ... Unpacking libbio-perl-run-perl (1.6.9-2) ... Selecting previously unselected package bioperl-run. Preparing to unpack .../bioperl-run_1.6.9-2_all.deb ... Unpacking bioperl-run (1.6.9-2) ... Selecting previously unselected package blast2. Preparing to unpack .../blast2_1%3a2.2.26.20120620-8_amd64.deb ... Unpacking blast2 (1:2.2.26.20120620-8) ... Selecting previously unselected package bwa. Preparing to unpack .../bwa_0.7.10-1_amd64.deb ... Unpacking bwa (0.7.10-1) ... Selecting previously unselected package openssl. Preparing to unpack .../openssl_1.0.1t-1+deb8u8_amd64.deb ... Unpacking openssl (1.0.1t-1+deb8u8) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../ca-certificates_20141019+deb8u3_all.deb ... Unpacking ca-certificates (20141019+deb8u3) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../libargtable2-0_12-1.1_amd64.deb ... Unpacking libargtable2-0 (12-1.1) ... Selecting previously unselected package clustalo. Preparing to unpack .../clustalo_1.2.1-1_amd64.deb ... Unpacking clustalo (1.2.1-1) ... Selecting previously unselected package clustalw. Preparing to unpack .../clustalw_2.1+lgpl-4_amd64.deb ... Unpacking clustalw (2.1+lgpl-4) ... Selecting previously unselected package dialign. Preparing to unpack .../dialign_2.2.1-7_amd64.deb ... Unpacking dialign (2.2.1-7) ... Selecting previously unselected package dialign-tx-data. Preparing to unpack .../dialign-tx-data_1.0.2-7_all.deb ... Unpacking dialign-tx-data (1.0.2-7) ... Selecting previously unselected package dialign-tx. Preparing to unpack .../dialign-tx_1.0.2-7_amd64.deb ... Unpacking dialign-tx (1.0.2-7) ... Selecting previously unselected package libhpdf-2.2.1. Preparing to unpack .../libhpdf-2.2.1_2.2.1-1.1_amd64.deb ... Unpacking libhpdf-2.2.1 (2.2.1-1.1) ... Selecting previously unselected package emboss-lib. Preparing to unpack .../emboss-lib_6.6.0+dfsg-1_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-1) ... Selecting previously unselected package emboss-data. Preparing to unpack .../emboss-data_6.6.0+dfsg-1_all.deb ... Unpacking emboss-data (6.6.0+dfsg-1) ... Selecting previously unselected package emboss. Preparing to unpack .../emboss_6.6.0+dfsg-1_amd64.deb ... Unpacking emboss (6.6.0+dfsg-1) ... Selecting previously unselected package exonerate. Preparing to unpack .../exonerate_2.2.0-6_amd64.deb ... Unpacking exonerate (2.2.0-6) ... Selecting previously unselected package libgd-perl. Preparing to unpack .../libgd-perl_2.53-1+b1_amd64.deb ... Unpacking libgd-perl (2.53-1+b1) ... Selecting previously unselected package libbio-graphics-perl. Preparing to unpack .../libbio-graphics-perl_2.39-2_all.deb ... Unpacking libbio-graphics-perl (2.39-2) ... Selecting previously unselected package libcgi-session-perl. Preparing to unpack .../libcgi-session-perl_4.48-1+deb8u1_all.deb ... Unpacking libcgi-session-perl (4.48-1+deb8u1) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../libjson-perl_2.61-1_all.deb ... Unpacking libjson-perl (2.61-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../liblist-moreutils-perl_0.33-2+b1_amd64.deb ... Unpacking liblist-moreutils-perl (0.33-2+b1) ... Selecting previously unselected package libstatistics-descriptive-perl. Preparing to unpack .../libstatistics-descriptive-perl_3.0607-1_all.deb ... Unpacking libstatistics-descriptive-perl (3.0607-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../libencode-locale-perl_1.03-1_all.deb ... Unpacking libencode-locale-perl (1.03-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../libhttp-date-perl_6.02-1_all.deb ... Unpacking libhttp-date-perl (6.02-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../liburi-perl_1.64-1_all.deb ... Unpacking liburi-perl (1.64-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../libhtml-tagset-perl_3.20-2_all.deb ... Unpacking libhtml-tagset-perl (3.20-2) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../libhtml-parser-perl_3.71-1+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.71-1+b3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../libhtml-tree-perl_5.03-1_all.deb ... Unpacking libhtml-tree-perl (5.03-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../libio-html-perl_1.001-1_all.deb ... Unpacking libio-html-perl (1.001-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../liblwp-mediatypes-perl_6.02-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.02-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../libhttp-message-perl_6.06-1_all.deb ... Unpacking libhttp-message-perl (6.06-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../libhttp-cookies-perl_6.01-1_all.deb ... Unpacking libhttp-cookies-perl (6.01-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../libhttp-negotiate-perl_6.00-2_all.deb ... Unpacking libhttp-negotiate-perl (6.00-2) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../libnet-ssleay-perl_1.65-1+deb8u1_amd64.deb ... Unpacking libnet-ssleay-perl (1.65-1+deb8u1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../libio-socket-ssl-perl_2.002-2+deb8u3_all.deb ... Unpacking libio-socket-ssl-perl (2.002-2+deb8u3) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../libnet-http-perl_6.07-1_all.deb ... Unpacking libnet-http-perl (6.07-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../liblwp-protocol-https-perl_6.06-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.06-2) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../libwww-perl_6.08-1_all.deb ... Unpacking libwww-perl (6.08-1) ... Selecting previously unselected package libhttp-daemon-perl. Preparing to unpack .../libhttp-daemon-perl_6.01-1_all.deb ... Unpacking libhttp-daemon-perl (6.01-1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../libterm-readkey-perl_2.32-1+b1_amd64.deb ... Unpacking libterm-readkey-perl (2.32-1+b1) ... Selecting previously unselected package sqlite3. Preparing to unpack .../sqlite3_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking sqlite3 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libdbi-perl. Preparing to unpack .../libdbi-perl_1.631-3+b1_amd64.deb ... Unpacking libdbi-perl (1.631-3+b1) ... Selecting previously unselected package libdbd-sqlite3-perl. Preparing to unpack .../libdbd-sqlite3-perl_1.44-1_amd64.deb ... Unpacking libdbd-sqlite3-perl (1.44-1) ... Selecting previously unselected package libjs-prototype. Preparing to unpack .../libjs-prototype_1.7.1-3_all.deb ... Unpacking libjs-prototype (1.7.1-3) ... Selecting previously unselected package libjs-scriptaculous. Preparing to unpack .../libjs-scriptaculous_1.9.0-2_all.deb ... Unpacking libjs-scriptaculous (1.9.0-2) ... Selecting previously unselected package libanyevent-perl. Preparing to unpack .../libanyevent-perl_7.070-3_amd64.deb ... Unpacking libanyevent-perl (7.070-3) ... Selecting previously unselected package libanyevent-cachedns-perl. Preparing to unpack .../libanyevent-cachedns-perl_0.08-1_all.deb ... Unpacking libanyevent-cachedns-perl (0.08-1) ... Selecting previously unselected package libcommon-sense-perl. Preparing to unpack .../libcommon-sense-perl_3.73-2+b3_amd64.deb ... Unpacking libcommon-sense-perl (3.73-2+b3) ... Selecting previously unselected package libanyevent-http-perl. Preparing to unpack .../libanyevent-http-perl_2.21-1_all.deb ... Unpacking libanyevent-http-perl (2.21-1) ... Selecting previously unselected package libstring-approx-perl. Preparing to unpack .../libstring-approx-perl_3.27-1+b2_amd64.deb ... Unpacking libstring-approx-perl (3.27-1+b2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.11-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../libxml-sax-base-perl_1.07-1_all.deb ... Unpacking libxml-sax-base-perl (1.07-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../libxml-sax-perl_0.99+dfsg-2_all.deb ... Unpacking libxml-sax-perl (0.99+dfsg-2) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../libxml-libxml-perl_2.0116+dfsg-1+deb8u2_amd64.deb ... Unpacking libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../libxml-parser-perl_2.41-3_amd64.deb ... Unpacking libxml-parser-perl (2.41-3) ... Selecting previously unselected package libxml-sax-expat-perl. Preparing to unpack .../libxml-sax-expat-perl_0.40-2_all.deb ... Unpacking libxml-sax-expat-perl (0.40-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../libxml-simple-perl_2.20-1_all.deb ... Unpacking libxml-simple-perl (2.20-1) ... Selecting previously unselected package libvm-ec2-perl. Preparing to unpack .../libvm-ec2-perl_1.28-1_all.deb ... Unpacking libvm-ec2-perl (1.28-1) ... Selecting previously unselected package gbrowse. Preparing to unpack .../gbrowse_2.54+dfsg-3_all.deb ... Unpacking gbrowse (2.54+dfsg-3) ... Selecting previously unselected package gbrowse-calign. Preparing to unpack .../gbrowse-calign_2.54+dfsg-3+b1_amd64.deb ... Unpacking gbrowse-calign (2.54+dfsg-3+b1) ... Selecting previously unselected package libjbig2dec0. Preparing to unpack .../libjbig2dec0_0.13-4~deb8u2_amd64.deb ... Unpacking libjbig2dec0 (0.13-4~deb8u2) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../libgs9-common_9.06~dfsg-2+deb8u7_all.deb ... Unpacking libgs9-common (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package libgs9. Preparing to unpack .../libgs9_9.06~dfsg-2+deb8u7_amd64.deb ... Unpacking libgs9 (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package gsfonts. Preparing to unpack .../gsfonts_1%3a8.11+urwcyr1.0.7~pre44-4.2_all.deb ... Unpacking gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Selecting previously unselected package ghostscript. Preparing to unpack .../ghostscript_9.06~dfsg-2+deb8u7_amd64.deb ... Unpacking ghostscript (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package libcdt5. Preparing to unpack .../libcdt5_2.38.0-7_amd64.deb ... Unpacking libcdt5 (2.38.0-7) ... Selecting previously unselected package libcgraph6. Preparing to unpack .../libcgraph6_2.38.0-7_amd64.deb ... Unpacking libcgraph6 (2.38.0-7) ... Selecting previously unselected package libpathplan4. Preparing to unpack .../libpathplan4_2.38.0-7_amd64.deb ... Unpacking libpathplan4 (2.38.0-7) ... Selecting previously unselected package libxdot4. Preparing to unpack .../libxdot4_2.38.0-7_amd64.deb ... Unpacking libxdot4 (2.38.0-7) ... Selecting previously unselected package libgvc6. Preparing to unpack .../libgvc6_2.38.0-7_amd64.deb ... Unpacking libgvc6 (2.38.0-7) ... Selecting previously unselected package libgvpr2. Preparing to unpack .../libgvpr2_2.38.0-7_amd64.deb ... Unpacking libgvpr2 (2.38.0-7) ... Selecting previously unselected package graphviz. Preparing to unpack .../graphviz_2.38.0-7_amd64.deb ... Unpacking graphviz (2.38.0-7) ... Selecting previously unselected package hmmer. Preparing to unpack .../hmmer_3.1b1-3_amd64.deb ... Unpacking hmmer (3.1b1-3) ... Selecting previously unselected package infernal. Preparing to unpack .../infernal_1.1.1-2_amd64.deb ... Unpacking infernal (1.1.1-2) ... Selecting previously unselected package javascript-common. Preparing to unpack .../javascript-common_11_all.deb ... Unpacking javascript-common (11) ... Selecting previously unselected package kalign. Preparing to unpack .../kalign_1%3a2.03+20110620-2_amd64.deb ... Unpacking kalign (1:2.03+20110620-2) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../liberror-perl_0.17-1.1_all.deb ... Unpacking liberror-perl (0.17-1.1) ... Selecting previously unselected package libipc-sharelite-perl. Preparing to unpack .../libipc-sharelite-perl_0.17-3+b2_amd64.deb ... Unpacking libipc-sharelite-perl (0.17-3+b2) ... Selecting previously unselected package libcache-cache-perl. Preparing to unpack .../libcache-cache-perl_1.07-2_all.deb ... Unpacking libcache-cache-perl (1.07-2) ... Selecting previously unselected package libace-perl. Preparing to unpack .../libace-perl_1.92-3+b1_amd64.deb ... Unpacking libace-perl (1.92-3+b1) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../libalgorithm-c3-perl_0.09-1_all.deb ... Unpacking libalgorithm-c3-perl (0.09-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../libalgorithm-diff-perl_1.19.02-3_all.deb ... Unpacking libalgorithm-diff-perl (1.19.02-3) ... Selecting previously unselected package libalgorithm-diff-xs-perl. Preparing to unpack .../libalgorithm-diff-xs-perl_0.04-3+b1_amd64.deb ... Unpacking libalgorithm-diff-xs-perl (0.04-3+b1) ... Selecting previously unselected package libalgorithm-munkres-perl. Preparing to unpack .../libalgorithm-munkres-perl_0.08-2_all.deb ... Unpacking libalgorithm-munkres-perl (0.08-2) ... Selecting previously unselected package libperl5.20. Preparing to unpack .../libperl5.20_5.20.2-3+deb8u11_amd64.deb ... Unpacking libperl5.20 (5.20.2-3+deb8u11) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../libdevel-symdump-perl_2.12-1_all.deb ... Unpacking libdevel-symdump-perl (2.12-1) ... Selecting previously unselected package libapache2-mod-perl2. Preparing to unpack .../libapache2-mod-perl2_2.0.9~1624218-2+deb8u2_amd64.deb ... Unpacking libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Selecting previously unselected package libapache-dbi-perl. Preparing to unpack .../libapache-dbi-perl_1.12-1_all.deb ... Unpacking libapache-dbi-perl (1.12-1) ... Selecting previously unselected package libapache2-reload-perl. Preparing to unpack .../libapache2-reload-perl_0.12-3_all.deb ... Unpacking libapache2-reload-perl (0.12-3) ... Selecting previously unselected package libarchive-extract-perl. Preparing to unpack .../libarchive-extract-perl_0.72-1_all.deb ... Unpacking libarchive-extract-perl (0.72-1) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../libclass-method-modifiers-perl_2.11-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.11-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../libsub-exporter-progressive-perl_0.001011-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001011-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../libdevel-globaldestruction-perl_0.13-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.13-1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../libparams-classify-perl_0.013-4+b2_amd64.deb ... Unpacking libparams-classify-perl (0.013-4+b2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../libmodule-runtime-perl_0.014-1_all.deb ... Unpacking libmodule-runtime-perl (0.014-1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../libimport-into-perl_1.002004-1_all.deb ... Unpacking libimport-into-perl (1.002004-1) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../librole-tiny-perl_1.003004-1_all.deb ... Unpacking librole-tiny-perl (1.003004-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../libstrictures-perl_1.005005-1_all.deb ... Unpacking libstrictures-perl (1.005005-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../libmoo-perl_1.006001-1_all.deb ... Unpacking libmoo-perl (1.006001-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../libexporter-tiny-perl_0.038-2_all.deb ... Unpacking libexporter-tiny-perl (0.038-2) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../libtype-tiny-perl_1.000004-1_all.deb ... Unpacking libtype-tiny-perl (1.000004-1) ... Selecting previously unselected package libarray-compare-perl. Preparing to unpack .../libarray-compare-perl_2.11-1_all.deb ... Unpacking libarray-compare-perl (2.11-1) ... Selecting previously unselected package libasync-interrupt-perl. Preparing to unpack .../libasync-interrupt-perl_1.20-1+b1_amd64.deb ... Unpacking libasync-interrupt-perl (1.20-1+b1) ... Selecting previously unselected package libauthen-sasl-perl. Preparing to unpack .../libauthen-sasl-perl_2.1600-1_all.deb ... Unpacking libauthen-sasl-perl (2.1600-1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../libb-hooks-op-check-perl_0.19-2+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.19-2+b1) ... Selecting previously unselected package liblexical-sealrequirehints-perl. Preparing to unpack .../liblexical-sealrequirehints-perl_0.007-1+b2_amd64.deb ... Unpacking liblexical-sealrequirehints-perl (0.007-1+b2) ... Selecting previously unselected package libbareword-filehandles-perl. Preparing to unpack .../libbareword-filehandles-perl_0.003-1+b2_amd64.deb ... Unpacking libbareword-filehandles-perl (0.003-1+b2) ... Selecting previously unselected package libbio-asn1-entrezgene-perl. Preparing to unpack .../libbio-asn1-entrezgene-perl_1.700-1_all.deb ... Unpacking libbio-asn1-entrezgene-perl (1.700-1) ... Selecting previously unselected package libstaden-read1. Preparing to unpack .../libstaden-read1_1.13.7-1_amd64.deb ... Unpacking libstaden-read1 (1.13.7-1) ... Selecting previously unselected package libbio-scf-perl. Preparing to unpack .../libbio-scf-perl_1.03-2+b1_amd64.deb ... Unpacking libbio-scf-perl (1.03-2+b1) ... Selecting previously unselected package libcarp-clan-perl. Preparing to unpack .../libcarp-clan-perl_6.04-1_all.deb ... Unpacking libcarp-clan-perl (6.04-1) ... Selecting previously unselected package libbit-vector-perl. Preparing to unpack .../libbit-vector-perl_7.3-1+b2_amd64.deb ... Unpacking libbit-vector-perl (7.3-1+b2) ... Selecting previously unselected package libbsd-resource-perl. Preparing to unpack .../libbsd-resource-perl_1.2907-1+b2_amd64.deb ... Unpacking libbsd-resource-perl (1.2907-1+b2) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../libcgi-pm-perl_4.09-1_all.deb ... Unpacking libcgi-pm-perl (4.09-1) ... Selecting previously unselected package libfcgi-perl. Preparing to unpack .../libfcgi-perl_0.77-1+deb8u1_amd64.deb ... Unpacking libfcgi-perl (0.77-1+deb8u1) ... Selecting previously unselected package libcgi-fast-perl. Preparing to unpack .../libcgi-fast-perl_1%3a2.04-1_all.deb ... Unpacking libcgi-fast-perl (1:2.04-1) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../libclass-c3-perl_0.26-1_all.deb ... Unpacking libclass-c3-perl (0.26-1) ... Selecting previously unselected package libclass-c3-xs-perl. Preparing to unpack .../libclass-c3-xs-perl_0.13-2+b1_amd64.deb ... Unpacking libclass-c3-xs-perl (0.13-2+b1) ... Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../libclass-inspector-perl_1.28-1_all.deb ... Unpacking libclass-inspector-perl (1.28-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../libclass-xsaccessor-perl_1.19-2+b4_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-2+b4) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../libclone-perl_0.37-1+b1_amd64.deb ... Unpacking libclone-perl (0.37-1+b1) ... Selecting previously unselected package libconvert-binary-c-perl. Preparing to unpack .../libconvert-binary-c-perl_0.76-3+b2_amd64.deb ... Unpacking libconvert-binary-c-perl (0.76-3+b2) ... Selecting previously unselected package libconvert-binhex-perl. Preparing to unpack .../libconvert-binhex-perl_1.123-2_all.deb ... Unpacking libconvert-binhex-perl (1.123-2) ... Selecting previously unselected package libcpan-meta-perl. Preparing to unpack .../libcpan-meta-perl_2.142690-1_all.deb ... Unpacking libcpan-meta-perl (2.142690-1) ... Selecting previously unselected package libcrypt-rc4-perl. Preparing to unpack .../libcrypt-rc4-perl_2.02-2_all.deb ... Unpacking libcrypt-rc4-perl (2.02-2) ... Selecting previously unselected package libcrypt-ssleay-perl. Preparing to unpack .../libcrypt-ssleay-perl_0.58-1+b2_amd64.deb ... Unpacking libcrypt-ssleay-perl (0.58-1+b2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../libparams-util-perl_1.07-2+b1_amd64.deb ... Unpacking libparams-util-perl (1.07-2+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../libsub-install-perl_0.928-1_all.deb ... Unpacking libsub-install-perl (0.928-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../libdata-optlist-perl_0.109-1_all.deb ... Unpacking libdata-optlist-perl (0.109-1) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../libmro-compat-perl_0.12-1_all.deb ... Unpacking libmro-compat-perl (0.12-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../libsub-exporter-perl_0.986-1_all.deb ... Unpacking libsub-exporter-perl (0.986-1) ... Selecting previously unselected package libdata-section-perl. Preparing to unpack .../libdata-section-perl_0.200006-1_all.deb ... Unpacking libdata-section-perl (0.200006-1) ... Selecting previously unselected package libdate-calc-perl. Preparing to unpack .../libdate-calc-perl_6.3-2_all.deb ... Unpacking libdate-calc-perl (6.3-2) ... Selecting previously unselected package libdate-calc-xs-perl. Preparing to unpack .../libdate-calc-xs-perl_6.3-2_amd64.deb ... Unpacking libdate-calc-xs-perl (6.3-2) ... Selecting previously unselected package libdate-manip-perl. Preparing to unpack .../libdate-manip-perl_6.47-1_all.deb ... Unpacking libdate-manip-perl (6.47-1) ... Selecting previously unselected package libdbd-mysql-perl. Preparing to unpack .../libdbd-mysql-perl_4.028-2+deb8u2_amd64.deb ... Unpacking libdbd-mysql-perl (4.028-2+deb8u2) ... Selecting previously unselected package libdbd-pg-perl. Preparing to unpack .../libdbd-pg-perl_3.4.2-1_amd64.deb ... Unpacking libdbd-pg-perl (3.4.2-1) ... Selecting previously unselected package libpadwalker-perl. Preparing to unpack .../libpadwalker-perl_1.98-1+b1_amd64.deb ... Unpacking libpadwalker-perl (1.98-1+b1) ... Selecting previously unselected package libdevel-caller-perl. Preparing to unpack .../libdevel-caller-perl_2.06-1+b2_amd64.deb ... Unpacking libdevel-caller-perl (2.06-1+b2) ... Selecting previously unselected package libdevel-lexalias-perl. Preparing to unpack .../libdevel-lexalias-perl_0.05-1+b2_amd64.deb ... Unpacking libdevel-lexalias-perl (0.05-1+b2) ... Selecting previously unselected package libdigest-perl-md5-perl. Preparing to unpack .../libdigest-perl-md5-perl_1.9-1_all.deb ... Unpacking libdigest-perl-md5-perl (1.9-1) ... Selecting previously unselected package libfile-slurp-tiny-perl. Preparing to unpack .../libfile-slurp-tiny-perl_0.003-1_all.deb ... Unpacking libfile-slurp-tiny-perl (0.003-1) ... Selecting previously unselected package libfont-afm-perl. Preparing to unpack .../libfont-afm-perl_1.20-1_all.deb ... Unpacking libfont-afm-perl (1.20-1) ... Selecting previously unselected package libfreezethaw-perl. Preparing to unpack .../libfreezethaw-perl_0.5001-1_all.deb ... Unpacking libfreezethaw-perl (0.5001-1) ... Selecting previously unselected package libsvg-perl. Preparing to unpack .../libsvg-perl_2.59-1_all.deb ... Unpacking libsvg-perl (2.59-1) ... Selecting previously unselected package libgd-svg-perl. Preparing to unpack .../libgd-svg-perl_0.33-1_all.deb ... Unpacking libgd-svg-perl (0.33-1) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../libglib2.0-data_2.42.1-1_all.deb ... Unpacking libglib2.0-data (2.42.1-1) ... Selecting previously unselected package libheap-perl. Preparing to unpack .../libheap-perl_0.80-2_all.deb ... Unpacking libheap-perl (0.80-2) ... Selecting previously unselected package libgraph-perl. Preparing to unpack .../libgraph-perl_1%3a0.96-1.1_all.deb ... Unpacking libgraph-perl (1:0.96-1.1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../libio-pty-perl_1%3a1.08-1+b4_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1+b4) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../libipc-run-perl_0.92-1+deb8u1_all.deb ... Unpacking libipc-run-perl (0.92-1+deb8u1) ... Selecting previously unselected package libxml-twig-perl. Preparing to unpack .../libxml-twig-perl_1%3a3.48-1_all.deb ... Unpacking libxml-twig-perl (1:3.48-1) ... Selecting previously unselected package libxml-xpath-perl. Preparing to unpack .../libxml-xpath-perl_1.13-7_all.deb ... Unpacking libxml-xpath-perl (1.13-7) ... Selecting previously unselected package libparse-recdescent-perl. Preparing to unpack .../libparse-recdescent-perl_1.967009+dfsg-1_all.deb ... Unpacking libparse-recdescent-perl (1.967009+dfsg-1) ... Selecting previously unselected package libgraphviz-perl. Preparing to unpack .../libgraphviz-perl_2.16-1_all.deb ... Unpacking libgraphviz-perl (2.16-1) ... Selecting previously unselected package libguard-perl. Preparing to unpack .../libguard-perl_1.022-2+b1_amd64.deb ... Unpacking libguard-perl (1.022-2+b1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../libhtml-form-perl_6.03-1_all.deb ... Unpacking libhtml-form-perl (6.03-1) ... Selecting previously unselected package libhtml-format-perl. Preparing to unpack .../libhtml-format-perl_2.11-1_all.deb ... Unpacking libhtml-format-perl (2.11-1) ... Selecting previously unselected package libhtml-tableextract-perl. Preparing to unpack .../libhtml-tableextract-perl_2.11-1_all.deb ... Unpacking libhtml-tableextract-perl (2.11-1) ... Selecting previously unselected package libindirect-perl. Preparing to unpack .../libindirect-perl_0.33-1_amd64.deb ... Unpacking libindirect-perl (0.33-1) ... Selecting previously unselected package libio-sessiondata-perl. Preparing to unpack .../libio-sessiondata-perl_1.03-1_all.deb ... Unpacking libio-sessiondata-perl (1.03-1) ... Selecting previously unselected package libio-stringy-perl. Preparing to unpack .../libio-stringy-perl_2.110-5_all.deb ... Unpacking libio-stringy-perl (2.110-5) ... Selecting previously unselected package libjcode-pm-perl. Preparing to unpack .../libjcode-pm-perl_2.06-1_amd64.deb ... Unpacking libjcode-pm-perl (2.06-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../libjs-jquery_1.7.2+dfsg-3.2_all.deb ... Unpacking libjs-jquery (1.7.2+dfsg-3.2) ... Selecting previously unselected package libjson-xs-perl. Preparing to unpack .../libjson-xs-perl_2.340-1+b2_amd64.deb ... Unpacking libjson-xs-perl (2.340-1+b2) ... Selecting previously unselected package liblog-message-perl. Preparing to unpack .../liblog-message-perl_0.8-1_all.deb ... Unpacking liblog-message-perl (0.8-1) ... Selecting previously unselected package liblog-message-simple-perl. Preparing to unpack .../liblog-message-simple-perl_0.10-2_all.deb ... Unpacking liblog-message-simple-perl (0.10-2) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../libnet-smtp-ssl-perl_1.01-3_all.deb ... Unpacking libnet-smtp-ssl-perl (1.01-3) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../libmailtools-perl_2.13-1_all.deb ... Unpacking libmailtools-perl (2.13-1) ... Selecting previously unselected package libmath-derivative-perl. Preparing to unpack .../libmath-derivative-perl_0.01-6_all.deb ... Unpacking libmath-derivative-perl (0.01-6) ... Selecting previously unselected package libmath-spline-perl. Preparing to unpack .../libmath-spline-perl_0.02-1_all.deb ... Unpacking libmath-spline-perl (0.02-1) ... Selecting previously unselected package libmime-tools-perl. Preparing to unpack .../libmime-tools-perl_5.505-1_all.deb ... Unpacking libmime-tools-perl (5.505-1) ... Selecting previously unselected package libmldbm-perl. Preparing to unpack .../libmldbm-perl_2.05-1_all.deb ... Unpacking libmldbm-perl (2.05-1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../libmodule-build-perl_0.421000-2+deb8u1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.421000-2+deb8u1) ... Selecting previously unselected package libmodule-pluggable-perl. Preparing to unpack .../libmodule-pluggable-perl_5.1-1_all.deb ... Unpacking libmodule-pluggable-perl (5.1-1) ... Selecting previously unselected package libmodule-signature-perl. Preparing to unpack .../libmodule-signature-perl_0.73-1+deb8u2_all.deb ... Unpacking libmodule-signature-perl (0.73-1+deb8u2) ... Selecting previously unselected package libmultidimensional-perl. Preparing to unpack .../libmultidimensional-perl_0.010-1+b2_amd64.deb ... Unpacking libmultidimensional-perl (0.010-1+b2) ... Selecting previously unselected package libole-storage-lite-perl. Preparing to unpack .../libole-storage-lite-perl_0.19-1_all.deb ... Unpacking libole-storage-lite-perl (0.19-1) ... Selecting previously unselected package libossp-uuid-perl. Preparing to unpack .../libossp-uuid-perl_1.6.2-1.5+b1_amd64.deb ... Unpacking libossp-uuid-perl (1.6.2-1.5+b1) ... Selecting previously unselected package libpackage-constants-perl. Preparing to unpack .../libpackage-constants-perl_0.04-1_all.deb ... Unpacking libpackage-constants-perl (0.04-1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../libpaper-utils_1.1.24+nmu4_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4) ... Selecting previously unselected package libpod-latex-perl. Preparing to unpack .../libpod-latex-perl_0.61-1_all.deb ... Adding 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Adding 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-1) ... Selecting previously unselected package libregexp-common-perl. Preparing to unpack .../libregexp-common-perl_2013031301-1_all.deb ... Unpacking libregexp-common-perl (2013031301-1) ... Selecting previously unselected package libpod-readme-perl. Preparing to unpack .../libpod-readme-perl_0.11-1_all.deb ... Unpacking libpod-readme-perl (0.11-1) ... Selecting previously unselected package libpostscript-perl. Preparing to unpack .../libpostscript-perl_0.06-2_all.deb ... Unpacking libpostscript-perl (0.06-2) ... Selecting previously unselected package libsasl2-modules:amd64. Preparing to unpack .../libsasl2-modules_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libtask-weaken-perl. Preparing to unpack .../libtask-weaken-perl_1.04-1_all.deb ... Unpacking libtask-weaken-perl (1.04-1) ... Selecting previously unselected package libsoap-lite-perl. Preparing to unpack .../libsoap-lite-perl_1.11-1_all.deb ... Unpacking libsoap-lite-perl (1.11-1) ... Selecting previously unselected package libtext-template-perl. Preparing to unpack .../libtext-template-perl_1.46-1_all.deb ... Unpacking libtext-template-perl (1.46-1) ... Selecting previously unselected package libsoftware-license-perl. Preparing to unpack .../libsoftware-license-perl_0.103010-3_all.deb ... Unpacking libsoftware-license-perl (0.103010-3) ... Selecting previously unselected package libsort-naturally-perl. Preparing to unpack .../libsort-naturally-perl_1.03-1_all.deb ... Unpacking libsort-naturally-perl (1.03-1) ... Selecting previously unselected package libspreadsheet-writeexcel-perl. Preparing to unpack .../libspreadsheet-writeexcel-perl_2.40-1_all.deb ... Unpacking libspreadsheet-writeexcel-perl (2.40-1) ... Selecting previously unselected package libunicode-map-perl. Preparing to unpack .../libunicode-map-perl_0.112-11+b1_amd64.deb ... Unpacking libunicode-map-perl (0.112-11+b1) ... Selecting previously unselected package libspreadsheet-parseexcel-perl. Preparing to unpack .../libspreadsheet-parseexcel-perl_0.6500-1_all.deb ... Unpacking libspreadsheet-parseexcel-perl (0.6500-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../libsub-name-perl_0.12-1_amd64.deb ... Unpacking libsub-name-perl (0.12-1) ... Selecting previously unselected package libtree-dagnode-perl. Preparing to unpack .../libtree-dagnode-perl_1.22-1_all.deb ... Unpacking libtree-dagnode-perl (1.22-1) ... Selecting previously unselected package libsvg-graph-perl. Preparing to unpack .../libsvg-graph-perl_0.02-2_all.deb ... Unpacking libsvg-graph-perl (0.02-2) ... Selecting previously unselected package libterm-ui-perl. Preparing to unpack .../libterm-ui-perl_0.42-1_all.deb ... Unpacking libterm-ui-perl (0.42-1) ... Selecting previously unselected package libtext-soundex-perl. Preparing to unpack .../libtext-soundex-perl_3.4-1+b2_amd64.deb ... Unpacking libtext-soundex-perl (3.4-1+b2) ... Selecting previously unselected package libtie-ixhash-perl. Preparing to unpack .../libtie-ixhash-perl_1.23-1_all.deb ... Unpacking libtie-ixhash-perl (1.23-1) ... Selecting previously unselected package libtype-tiny-xs-perl. Preparing to unpack .../libtype-tiny-xs-perl_0.010-1_amd64.deb ... Unpacking libtype-tiny-xs-perl (0.010-1) ... Selecting previously unselected package libxml-perl. Preparing to unpack .../libxml-perl_0.08-2_all.deb ... Unpacking libxml-perl (0.08-2) ... Selecting previously unselected package libxml-regexp-perl. Preparing to unpack .../libxml-regexp-perl_0.04-1_all.deb ... Unpacking libxml-regexp-perl (0.04-1) ... Selecting previously unselected package libxml-dom-perl. Preparing to unpack .../libxml-dom-perl_1.44-1_all.deb ... Unpacking libxml-dom-perl (1.44-1) ... Selecting previously unselected package libxml-xpathengine-perl. Preparing to unpack .../libxml-xpathengine-perl_0.13-1_all.deb ... Unpacking libxml-xpathengine-perl (0.13-1) ... Selecting previously unselected package libxml-dom-xpath-perl. Preparing to unpack .../libxml-dom-xpath-perl_0.14-1_all.deb ... Unpacking libxml-dom-xpath-perl (0.14-1) ... Selecting previously unselected package libxml-filter-buffertext-perl. Preparing to unpack .../libxml-filter-buffertext-perl_1.01-5_all.deb ... Unpacking libxml-filter-buffertext-perl (1.01-5) ... Selecting previously unselected package libxml-libxslt-perl. Preparing to unpack .../libxml-libxslt-perl_1.92-1+b1_amd64.deb ... Unpacking libxml-libxslt-perl (1.92-1+b1) ... Selecting previously unselected package libxml-sax-writer-perl. Preparing to unpack .../libxml-sax-writer-perl_0.54-1_all.deb ... Unpacking libxml-sax-writer-perl (0.54-1) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../libxml-writer-perl_0.625-1_all.deb ... Unpacking libxml-writer-perl (0.625-1) ... Selecting previously unselected package libxmlrpc-lite-perl. Preparing to unpack .../libxmlrpc-lite-perl_0.717-1_all.deb ... Unpacking libxmlrpc-lite-perl (0.717-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../libyaml-libyaml-perl_0.41-6_amd64.deb ... Unpacking libyaml-libyaml-perl (0.41-6) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../libyaml-perl_1.13-1_all.deb ... Unpacking libyaml-perl (1.13-1) ... Selecting previously unselected package mafft. Preparing to unpack .../mafft_7.205-1_amd64.deb ... Unpacking mafft (7.205-1) ... Selecting previously unselected package maq. Preparing to unpack .../archives/maq_0.7.1-5_amd64.deb ... Unpacking maq (0.7.1-5) ... Selecting previously unselected package muscle. Preparing to unpack .../muscle_1%3a3.8.31-1_amd64.deb ... Unpacking muscle (1:3.8.31-1) ... Selecting previously unselected package mustang. Preparing to unpack .../mustang_3.2.2-1_amd64.deb ... Unpacking mustang (3.2.2-1) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../ncbi-blast+_2.2.29-3_amd64.deb ... Unpacking ncbi-blast+ (2.2.29-3) ... Selecting previously unselected package perl-doc. Preparing to unpack .../perl-doc_5.20.2-3+deb8u11_all.deb ... Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.20.2-3+deb8u11) ... Selecting previously unselected package perl-tk. Preparing to unpack .../perl-tk_1%3a804.032-3+b3_amd64.deb ... Unpacking perl-tk (1:804.032-3+b3) ... Selecting previously unselected package phyml. Preparing to unpack .../phyml_2%3a20120412-2_amd64.deb ... Unpacking phyml (2:20120412-2) ... Selecting previously unselected package poa. Preparing to unpack .../poa_2.0+20060928-3_amd64.deb ... Unpacking poa (2.0+20060928-3) ... Selecting previously unselected package prank. Preparing to unpack .../prank_0.0.140110-1_amd64.deb ... Unpacking prank (0.0.140110-1) ... Selecting previously unselected package primer3. Preparing to unpack .../primer3_2.3.6-1_amd64.deb ... Unpacking primer3 (2.3.6-1) ... Selecting previously unselected package probalign. Preparing to unpack .../probalign_1.4-3_amd64.deb ... Unpacking probalign (1.4-3) ... Selecting previously unselected package probcons. Preparing to unpack .../probcons_1.12-9_amd64.deb ... Unpacking probcons (1.12-9) ... Selecting previously unselected package proda. Preparing to unpack .../archives/proda_1.0-8_amd64.deb ... Unpacking proda (1.0-8) ... Selecting previously unselected package rename. Preparing to unpack .../archives/rename_0.20-3_all.deb ... Unpacking rename (0.20-3) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../rubygems-integration_1.8_all.deb ... Unpacking rubygems-integration (1.8) ... Selecting previously unselected package libruby2.1:amd64. Preparing to unpack .../libruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking libruby2.1:amd64 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby2.1. Preparing to unpack .../ruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking ruby2.1 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby. Preparing to unpack .../ruby_1%3a2.1.5+deb8u2_all.deb ... Unpacking ruby (1:2.1.5+deb8u2) ... Selecting previously unselected package samtools. Preparing to unpack .../samtools_0.1.19-1_amd64.deb ... Unpacking samtools (0.1.19-1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../shared-mime-info_1.3-1_amd64.deb ... Unpacking shared-mime-info (1.3-1) ... Selecting previously unselected package sim4. Preparing to unpack .../sim4_0.0.20121010-1_amd64.deb ... Unpacking sim4 (0.0.20121010-1) ... Selecting previously unselected package ssl-cert. Preparing to unpack .../ssl-cert_1.0.35_all.deb ... Unpacking ssl-cert (1.0.35) ... Selecting previously unselected package t-coffee. Preparing to unpack .../t-coffee_11.00.8cbe486-1_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-1) ... Selecting previously unselected package tigr-glimmer. Preparing to unpack .../tigr-glimmer_3.02-3_amd64.deb ... Unpacking tigr-glimmer (3.02-3) ... Selecting previously unselected package tm-align. Preparing to unpack .../tm-align_20140601+dfsg-1_amd64.deb ... Unpacking tm-align (20140601+dfsg-1) ... Selecting previously unselected package wise-data. Preparing to unpack .../wise-data_2.4.1-17_all.deb ... Unpacking wise-data (2.4.1-17) ... Selecting previously unselected package wise. Preparing to unpack .../wise_2.4.1-17_amd64.deb ... Unpacking wise (2.4.1-17) ... Selecting previously unselected package xdg-user-dirs. Preparing to unpack .../xdg-user-dirs_0.15-2_amd64.deb ... Unpacking xdg-user-dirs (0.15-2) ... Selecting previously unselected package xml-core. Preparing to unpack .../xml-core_0.13+nmu2_all.deb ... Unpacking xml-core (0.13+nmu2) ... Selecting previously unselected package bowtie. Preparing to unpack .../bowtie_1.1.1-2_amd64.deb ... Unpacking bowtie (1.1.1-2) ... Selecting previously unselected package libev-perl. Preparing to unpack .../libev-perl_4.18-1_amd64.deb ... Unpacking libev-perl (4.18-1) ... Selecting previously unselected package libset-scalar-perl. Preparing to unpack .../libset-scalar-perl_1.29-1_all.deb ... Unpacking libset-scalar-perl (1.29-1) ... Selecting previously unselected package lynx-cur. Preparing to unpack .../lynx-cur_2.8.9dev1-2+deb8u1_amd64.deb ... Unpacking lynx-cur (2.8.9dev1-2+deb8u1) ... Selecting previously unselected package lynx. Preparing to unpack .../lynx_2.8.9dev1-2+deb8u1_all.deb ... Unpacking lynx (2.8.9dev1-2+deb8u1) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up perl (5.20.2-3+deb8u11) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up mime-support (3.58) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libapr1:amd64 (1.5.1-3) ... Setting up libaprutil1:amd64 (1.5.4-1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up apache2-bin (2.4.10-10+deb8u12) ... Setting up apache2-utils (2.4.10-10+deb8u12) ... Setting up apache2-data (2.4.10-10+deb8u12) ... Setting up apache2 (2.4.10-10+deb8u12) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: policy-rc.d denied execution of start. Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fonts-liberation (1.07.4-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up fonts-droid (1:4.4.4r2-6) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libcups2:amd64 (1.7.5-11+deb8u2) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Setting up libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libvpx1:amd64 (1.3.0-3+deb8u1) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up libgd3:amd64 (2.1.0-5+deb8u11) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up mysql-common (5.5.60-0+deb8u1) ... Setting up libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up libthai-data (0.1.21-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libpq5:amd64 (9.4.18-0+deb8u1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up poppler-data (0.4.7-1) ... Setting up sgml-base (1.26+nmu4) ... Setting up iproute2 (3.16.0-2) ... Setting up ifupdown (0.7.53.1) ... Creating /etc/network/interfaces. Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up netbase (5.3) ... Setting up dbus (1.8.22-0+deb8u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up file (1:5.22+15-2+deb8u4) ... Setting up krb5-locales (1.12.1+dfsg-19+deb8u4) ... Setting up amap-align (2.2-4) ... Setting up bedtools (2.21.0-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up libbio-perl-run-perl (1.6.9-2) ... Setting up bioperl-run (1.6.9-2) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up bwa (0.7.10-1) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done. Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up dialign (2.2.1-7) ... Setting up dialign-tx-data (1.0.2-7) ... Setting up dialign-tx (1.0.2-7) ... Setting up libhpdf-2.2.1 (2.2.1-1.1) ... Setting up emboss-lib (6.6.0+dfsg-1) ... Setting up emboss-data (6.6.0+dfsg-1) ... Setting up emboss (6.6.0+dfsg-1) ... Setting up exonerate (2.2.0-6) ... Setting up libgd-perl (2.53-1+b1) ... Setting up libbio-graphics-perl (2.39-2) ... Setting up libcgi-session-perl (4.48-1+deb8u1) ... Setting up libjson-perl (2.61-1) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up liburi-perl (1.64-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libterm-readkey-perl (2.32-1+b1) ... Setting up sqlite3 (3.8.7.1-1+deb8u2) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up libanyevent-perl (7.070-3) ... Setting up libanyevent-cachedns-perl (0.08-1) ... Setting up libcommon-sense-perl (3.73-2+b3) ... Setting up libanyevent-http-perl (2.21-1) ... Setting up libstring-approx-perl (3.27-1+b2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-simple-perl (2.20-1) ... Setting up libjbig2dec0 (0.13-4~deb8u2) ... Setting up libgs9-common (9.06~dfsg-2+deb8u7) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up graphviz (2.38.0-7) ... Setting up hmmer (3.1b1-3) ... Setting up infernal (1.1.1-2) ... Setting up javascript-common (11) ... apache2_invoke: Enable configuration javascript-common invoke-rc.d: policy-rc.d denied execution of reload. Setting up kalign (1:2.03+20110620-2) ... Setting up liberror-perl (0.17-1.1) ... Setting up libipc-sharelite-perl (0.17-3+b2) ... Setting up libcache-cache-perl (1.07-2) ... Setting up libace-perl (1.92-3+b1) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up libalgorithm-munkres-perl (0.08-2) ... Setting up libperl5.20 (5.20.2-3+deb8u11) ... Setting up libdevel-symdump-perl (2.12-1) ... Setting up libarchive-extract-perl (0.72-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up libsub-exporter-progressive-perl (0.001011-1) ... Setting up libdevel-globaldestruction-perl (0.13-1) ... Setting up libparams-classify-perl (0.013-4+b2) ... Setting up libmodule-runtime-perl (0.014-1) ... Setting up libimport-into-perl (1.002004-1) ... Setting up librole-tiny-perl (1.003004-1) ... Setting up libstrictures-perl (1.005005-1) ... Setting up libmoo-perl (1.006001-1) ... Setting up libexporter-tiny-perl (0.038-2) ... Setting up libtype-tiny-perl (1.000004-1) ... Setting up libarray-compare-perl (2.11-1) ... Setting up libasync-interrupt-perl (1.20-1+b1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libb-hooks-op-check-perl (0.19-2+b1) ... Setting up liblexical-sealrequirehints-perl (0.007-1+b2) ... Setting up libbareword-filehandles-perl (0.003-1+b2) ... Setting up libbio-asn1-entrezgene-perl (1.700-1) ... Setting up libstaden-read1 (1.13.7-1) ... Setting up libbio-scf-perl (1.03-2+b1) ... Setting up libcarp-clan-perl (6.04-1) ... Setting up libbit-vector-perl (7.3-1+b2) ... Setting up libbsd-resource-perl (1.2907-1+b2) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libclass-xsaccessor-perl (1.19-2+b4) ... Setting up libclone-perl (0.37-1+b1) ... Setting up libconvert-binary-c-perl (0.76-3+b2) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libdate-calc-perl (6.3-2) ... Setting up libdate-calc-xs-perl (6.3-2) ... Setting up libdate-manip-perl (6.47-1) ... Setting up libdbd-mysql-perl (4.028-2+deb8u2) ... Setting up libdbd-pg-perl (3.4.2-1) ... Setting up libpadwalker-perl (1.98-1+b1) ... Setting up libdevel-caller-perl (2.06-1+b2) ... Setting up libdevel-lexalias-perl (0.05-1+b2) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up libsvg-perl (2.59-1) ... Setting up libgd-svg-perl (0.33-1) ... Setting up libglib2.0-data (2.42.1-1) ... Setting up libheap-perl (0.80-2) ... Setting up libgraph-perl (1:0.96-1.1) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-run-perl (0.92-1+deb8u1) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libguard-perl (1.022-2+b1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhtml-tableextract-perl (2.11-1) ... Setting up libindirect-perl (0.33-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up libjson-xs-perl (2.340-1+b2) ... Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmath-derivative-perl (0.01-6) ... Setting up libmath-spline-perl (0.02-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up libmldbm-perl (2.05-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libmultidimensional-perl (0.010-1+b2) ... Setting up libole-storage-lite-perl (0.19-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libpostscript-perl (0.06-2) ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libunicode-map-perl (0.112-11+b1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libsub-name-perl (0.12-1) ... Setting up libtree-dagnode-perl (1.22-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libtie-ixhash-perl (1.23-1) ... Setting up libtype-tiny-xs-perl (0.010-1) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libxml-libxslt-perl (1.92-1+b1) ... Setting up libxml-sax-writer-perl (0.54-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libyaml-libyaml-perl (0.41-6) ... Setting up libyaml-perl (1.13-1) ... Setting up mafft (7.205-1) ... Setting up maq (0.7.1-5) ... Setting up muscle (1:3.8.31-1) ... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up perl-doc (5.20.2-3+deb8u11) ... Setting up perl-tk (1:804.032-3+b3) ... Setting up phyml (2:20120412-2) ... Setting up poa (2.0+20060928-3) ... Setting up prank (0.0.140110-1) ... Setting up primer3 (2.3.6-1) ... Setting up probalign (1.4-3) ... Setting up probcons (1.12-9) ... Setting up proda (1.0-8) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up samtools (0.1.19-1) ... Setting up shared-mime-info (1.3-1) ... Setting up sim4 (0.0.20121010-1) ... Setting up ssl-cert (1.0.35) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tigr-glimmer (3.02-3) ... Setting up tm-align (20140601+dfsg-1) ... Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up xdg-user-dirs (0.15-2) ... Setting up xml-core (0.13+nmu2) ... Setting up bowtie (1.1.1-2) ... Setting up libev-perl (4.18-1) ... Setting up libset-scalar-perl (1.29-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Setting up libwww-perl (6.08-1) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libvm-ec2-perl (1.28-1) ... Setting up gbrowse (2.54+dfsg-3) ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: policy-rc.d denied execution of reload. Setting up gbrowse-calign (2.54+dfsg-3+b1) ... Setting up libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... apache2_invoke: Enable module perl invoke-rc.d: policy-rc.d denied execution of restart. Setting up libapache-dbi-perl (1.12-1) ... Setting up libapache2-reload-perl (0.12-3) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libsoap-lite-perl (1.11-1) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-dom-perl (1.44-1) ... Setting up libxml-dom-xpath-perl (0.14-1) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libgs9 (9.06~dfsg-2+deb8u7) ... Setting up ghostscript (9.06~dfsg-2+deb8u7) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for sgml-base (1.26+nmu4) ... 1m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-y', 'install', 'gbrowse-calign'] 1m12.1s INFO: Running scripts post_install 1m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_install_exceptions'] 1m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_install_exceptions'] 1m12.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 1m13.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 1m13.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp6Y0ouF to stretch 1m13.9s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ stretch main 1m13.9s INFO: Running scripts pre_distupgrade 1m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_exceptions'] 1m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_exceptions'] 1m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', 'update'] 1m18.0s DUMP: Ign http://mirror-ubc.debian.org stretch InRelease Get:1 http://mirror-ubc.debian.org stretch Release.gpg [2434 B] Get:2 http://mirror-ubc.debian.org stretch Release [118 kB] Get:3 http://mirror-ubc.debian.org stretch/main amd64 Packages [7089 kB] Get:4 http://mirror-ubc.debian.org stretch/main Translation-en [5388 kB] Fetched 12.6 MB in 2s (4986 kB/s) Reading package lists... 1m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', 'update'] 1m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-y', 'upgrade'] 1m58.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: ifupdown iproute2 isc-dhcp-client isc-dhcp-common libatm1 libdns-export100 libheap-perl libirs-export91 libisc-export95 libisccfg-export90 libxtables10 Use 'apt-get autoremove' to remove them. The following packages have been kept back: amap-align apache2 apache2-bin apache2-data apache2-utils apt bedtools bioperl-run blast2 bowtie clustalo clustalw dbus dmsetup emboss emboss-data emboss-lib file gbrowse gbrowse-calign ghostscript gnupg graphviz hmmer ifupdown init initscripts iproute2 isc-dhcp-client isc-dhcp-common libace-perl libalgorithm-diff-xs-perl libanyevent-perl libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libasync-interrupt-perl libavahi-client3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libc-bin libc6 libcairo2 libclass-c3-xs-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libcpan-meta-perl libcrypt-ssleay-perl libcryptsetup4 libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdate-calc-perl libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-lexalias-perl libdevmapper1.02.1 libev-perl libfcgi-perl libfreetype6 libgcc1 libgd-perl libgd3 libgfortran3 libgomp1 libgs9 libgs9-common libguard-perl libgvc6 libhpdf-2.2.1 libhtml-parser-perl libindirect-perl libio-pty-perl libipc-sharelite-perl libjson-xs-perl libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblocale-gettext-perl libmagic1 libmultidimensional-perl libncbi6 libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libpadwalker-perl libparams-classify-perl libparams-util-perl libpod-readme-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librtmp1 libsasl2-2 libsasl2-modules libsqlite3-0 libstdc++6 libstring-approx-perl libsub-name-perl libsystemd0 libterm-readkey-perl libtext-charwidth-perl libtext-iconv-perl libtext-soundex-perl libtype-tiny-xs-perl libudev1 libunicode-map-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libyaml-libyaml-perl lynx lynx-cur maq mime-support mustang ncbi-blast+ ncbi-data openssl perl perl-base perl-doc perl-tk phyml prank primer3 probalign probcons procps python python-minimal python2.7 python2.7-minimal ruby samtools sqlite3 systemd sysv-rc sysvinit-utils t-coffee tigr-glimmer udev util-linux wise wise-data The following packages will be upgraded: acl adduser base-files base-passwd bash bioperl bsdutils bwa ca-certificates coreutils dash debconf debconf-i18n debian-archive-keyring debianutils dialign dialign-tx dialign-tx-data diffutils dpkg e2fslibs e2fsprogs exonerate findutils fontconfig fontconfig-config fonts-dejavu-core fonts-liberation gpgv grep gsfonts gzip hostname infernal insserv kalign krb5-locales libacl1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-munkres-perl libanyevent-cachedns-perl libanyevent-http-perl libapache2-reload-perl libapr1 libargtable2-0 libarray-compare-perl libatm1 libattr1 libaudit-common libaudit1 libavahi-common-data libavahi-common3 libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libblkid1 libbsd0 libbz2-1.0 libcache-cache-perl libcap-ng0 libcap2 libcap2-bin libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-c3-perl libclass-inspector-perl libclass-method-modifiers-perl libcomerr2 libconvert-binhex-perl libdata-optlist-perl libdata-stag-perl libdate-manip-perl libdatrie1 libdb5.3 libdebconfclient0 libdevel-globaldestruction-perl libdevel-symdump-perl libencode-locale-perl liberror-perl libexpat1 libexporter-tiny-perl libffi6 libfont-afm-perl libfontconfig1 libgcrypt20 libgdbm3 libglib2.0-0 libglib2.0-data libgmp10 libgpg-error0 libgraph-perl libgraphite2-3 libgraphviz-perl libgssapi-krb5-2 libgvpr2 libharfbuzz0b libheap-perl libhtml-format-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-message-perl libice6 libidn11 libijs-0.35 libimport-into-perl libio-socket-ssl-perl libio-stringy-perl libipc-run-perl libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjson-perl libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblcms2-2 libltdl7 liblua5.1-0 liblzma5 libmailtools-perl libmath-derivative-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmount1 libncurses5 libncursesw5 libnet-http-perl libnet-smtp-ssl-perl libp11-kit0 libpackage-constants-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparse-recdescent-perl libpathplan4 libpcre3 libpixman-1-0 libpod-latex-perl libregexp-common-perl librole-tiny-perl libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libset-scalar-perl libslang2 libsm6 libsmartcols1 libsoap-lite-perl libsoftware-license-perl libss2 libssh2-1 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-progressive-perl libsvg-perl libtasn1-6 libterm-ui-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtinfo5 libtree-dagnode-perl libtype-tiny-perl liburi-perl libusb-0.1-4 libustr-1.0-1 libuuid1 libvm-ec2-perl libwww-perl libx11-6 libx11-data libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-xpath-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-perl login lsb-base mafft mawk mount multiarch-support muscle mysql-common ncurses-base ncurses-bin netbase passwd poa poppler-data proda readline-common rename rubygems-integration sed sensible-utils sgml-base shared-mime-info sim4 ssl-cert startpar systemd-sysv tar tm-align tzdata ucf x11-common xdg-user-dirs xml-core zlib1g 250 upgraded, 0 newly installed, 0 to remove and 162 not upgraded. Need to get 82.9 MB of archives. After this operation, 30.3 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ stretch/main base-files amd64 9.9+deb9u6 [67.3 kB] Get:2 http://mirror-ubc.debian.org/debian/ stretch/main libtinfo5 amd64 6.0+20161126-1+deb9u2 [300 kB] Get:3 http://mirror-ubc.debian.org/debian/ stretch/main libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:4 http://mirror-ubc.debian.org/debian/ stretch/main libncursesw5 amd64 6.0+20161126-1+deb9u2 [115 kB] Get:5 http://mirror-ubc.debian.org/debian/ stretch/main sensible-utils all 0.0.9+deb9u1 [10.8 kB] Get:6 http://mirror-ubc.debian.org/debian/ stretch/main debianutils amd64 4.8.1.1 [100 kB] Get:7 http://mirror-ubc.debian.org/debian/ stretch/main bash amd64 4.4-5 [1427 kB] Get:8 http://mirror-ubc.debian.org/debian/ stretch/main bsdutils amd64 1:2.29.2-1+deb9u1 [112 kB] Get:9 http://mirror-ubc.debian.org/debian/ stretch/main coreutils amd64 8.26-3 [2870 kB] Get:10 http://mirror-ubc.debian.org/debian/ stretch/main tar amd64 1.29b-1.1 [759 kB] Get:11 http://mirror-ubc.debian.org/debian/ stretch/main liblzma5 amd64 5.2.2-1.2+b1 [234 kB] Get:12 http://mirror-ubc.debian.org/debian/ stretch/main dpkg amd64 1.18.25 [2115 kB] Get:13 http://mirror-ubc.debian.org/debian/ stretch/main dash amd64 0.5.8-2.4 [109 kB] Get:14 http://mirror-ubc.debian.org/debian/ stretch/main diffutils amd64 1:3.5-3 [314 kB] Get:15 http://mirror-ubc.debian.org/debian/ stretch/main e2fslibs amd64 1.43.4-2 [208 kB] Get:16 http://mirror-ubc.debian.org/debian/ stretch/main e2fsprogs amd64 1.43.4-2 [946 kB] Get:17 http://mirror-ubc.debian.org/debian/ stretch/main findutils amd64 4.6.0+git+20161106-2 [622 kB] Get:18 http://mirror-ubc.debian.org/debian/ stretch/main grep amd64 2.27-2 [382 kB] Get:19 http://mirror-ubc.debian.org/debian/ stretch/main gzip amd64 1.6-5+b1 [114 kB] Get:20 http://mirror-ubc.debian.org/debian/ stretch/main hostname amd64 3.18+b1 [14.9 kB] Get:21 http://mirror-ubc.debian.org/debian/ stretch/main login amd64 1:4.4-4.1 [790 kB] Get:22 http://mirror-ubc.debian.org/debian/ stretch/main libpcre3 amd64 2:8.39-3 [337 kB] Get:23 http://mirror-ubc.debian.org/debian/ stretch/main libselinux1 amd64 2.6-3+b3 [101 kB] Get:24 http://mirror-ubc.debian.org/debian/ stretch/main libsmartcols1 amd64 2.29.2-1+deb9u1 [126 kB] Get:25 http://mirror-ubc.debian.org/debian/ stretch/main mount amd64 2.29.2-1+deb9u1 [189 kB] Get:26 http://mirror-ubc.debian.org/debian/ stretch/main ncurses-bin amd64 6.0+20161126-1+deb9u2 [366 kB] Get:27 http://mirror-ubc.debian.org/debian/ stretch/main sed amd64 4.4-1 [280 kB] Get:28 http://mirror-ubc.debian.org/debian/ stretch/main libdebconfclient0 amd64 0.227 [47.8 kB] Get:29 http://mirror-ubc.debian.org/debian/ stretch/main base-passwd amd64 3.5.43 [57.7 kB] Get:30 http://mirror-ubc.debian.org/debian/ stretch/main ncurses-base all 6.0+20161126-1+deb9u2 [238 kB] Get:31 http://mirror-ubc.debian.org/debian/ stretch/main systemd-sysv amd64 232-25+deb9u6 [81.4 kB] Get:32 http://mirror-ubc.debian.org/debian/ stretch/main libtext-wrapi18n-perl all 0.06-7.1 [8644 B] Get:33 http://mirror-ubc.debian.org/debian/ stretch/main debconf-i18n all 1.5.61 [205 kB] Get:34 http://mirror-ubc.debian.org/debian/ stretch/main debconf all 1.5.61 [159 kB] Get:35 http://mirror-ubc.debian.org/debian/ stretch/main libaudit-common all 1:2.6.7-2 [18.1 kB] Get:36 http://mirror-ubc.debian.org/debian/ stretch/main libcap-ng0 amd64 0.7.7-3+b1 [13.8 kB] Get:37 http://mirror-ubc.debian.org/debian/ stretch/main libaudit1 amd64 1:2.6.7-2 [51.3 kB] Get:38 http://mirror-ubc.debian.org/debian/ stretch/main libpam0g amd64 1.1.8-3.6 [125 kB] Get:39 http://mirror-ubc.debian.org/debian/ stretch/main libpam-modules-bin amd64 1.1.8-3.6 [105 kB] Get:40 http://mirror-ubc.debian.org/debian/ stretch/main libpam-modules amd64 1.1.8-3.6 [308 kB] Get:41 http://mirror-ubc.debian.org/debian/ stretch/main mawk amd64 1.3.3-17+b3 [84.6 kB] Get:42 http://mirror-ubc.debian.org/debian/ stretch/main libexpat1 amd64 2.2.0-2+deb9u1 [83.4 kB] Get:43 http://mirror-ubc.debian.org/debian/ stretch/main ucf all 3.0036 [70.2 kB] Get:44 http://mirror-ubc.debian.org/debian/ stretch/main fonts-dejavu-core all 2.37-1 [1068 kB] Get:45 http://mirror-ubc.debian.org/debian/ stretch/main fonts-liberation all 1:1.07.4-2 [827 kB] Get:46 http://mirror-ubc.debian.org/debian/ stretch/main fontconfig-config all 2.11.0-6.7 [271 kB] Get:47 http://mirror-ubc.debian.org/debian/ stretch/main libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:48 http://mirror-ubc.debian.org/debian/ stretch/main fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:49 http://mirror-ubc.debian.org/debian/ stretch/main poppler-data all 0.4.7-8 [1451 kB] Get:50 http://mirror-ubc.debian.org/debian/ stretch/main sgml-base all 1.29 [14.8 kB] Get:51 http://mirror-ubc.debian.org/debian/ stretch/main libsepol1 amd64 2.6-2 [241 kB] Get:52 http://mirror-ubc.debian.org/debian/ stretch/main libsemanage-common all 2.6-2 [26.9 kB] Get:53 http://mirror-ubc.debian.org/debian/ stretch/main libsemanage1 amd64 2.6-2 [103 kB] Get:54 http://mirror-ubc.debian.org/debian/ stretch/main libbz2-1.0 amd64 1.0.6-8.1 [43.5 kB] Get:55 http://mirror-ubc.debian.org/debian/ stretch/main libustr-1.0-1 amd64 1.0.4-6 [76.3 kB] Get:56 http://mirror-ubc.debian.org/debian/ stretch/main passwd amd64 1:4.4-4.1 [996 kB] Get:57 http://mirror-ubc.debian.org/debian/ stretch/main adduser all 3.115 [241 kB] Get:58 http://mirror-ubc.debian.org/debian/ stretch/main libgpg-error0 amd64 1.26-2 [112 kB] Get:59 http://mirror-ubc.debian.org/debian/ stretch/main libgcrypt20 amd64 1.7.6-2+deb9u3 [524 kB] Get:60 http://mirror-ubc.debian.org/debian/ stretch/main zlib1g amd64 1:1.2.8.dfsg-5 [87.5 kB] Get:61 http://mirror-ubc.debian.org/debian/ stretch/main gpgv amd64 2.1.18-8~deb9u3 [481 kB] Get:62 http://mirror-ubc.debian.org/debian/ stretch/main debian-archive-keyring all 2017.5 [56.4 kB] Get:63 http://mirror-ubc.debian.org/debian/ stretch/main libkmod2 amd64 23-2 [48.1 kB] Get:64 http://mirror-ubc.debian.org/debian/ stretch/main libslang2 amd64 2.3.1-5 [503 kB] Get:65 http://mirror-ubc.debian.org/debian/ stretch/main readline-common all 7.0-3 [70.4 kB] Get:66 http://mirror-ubc.debian.org/debian/ stretch/main libattr1 amd64 1:2.4.47-2+b2 [18.4 kB] Get:67 http://mirror-ubc.debian.org/debian/ stretch/main libacl1 amd64 2.2.52-3+b1 [28.1 kB] Get:68 http://mirror-ubc.debian.org/debian/ stretch/main acl amd64 2.2.52-3+b1 [59.5 kB] Get:69 http://mirror-ubc.debian.org/debian/ stretch/main libuuid1 amd64 2.29.2-1+deb9u1 [70.1 kB] Get:70 http://mirror-ubc.debian.org/debian/ stretch/main libblkid1 amd64 2.29.2-1+deb9u1 [168 kB] Get:71 http://mirror-ubc.debian.org/debian/ stretch/main libcomerr2 amd64 1.43.4-2 [63.5 kB] Get:72 http://mirror-ubc.debian.org/debian/ stretch/main libmount1 amd64 2.29.2-1+deb9u1 [178 kB] Get:73 http://mirror-ubc.debian.org/debian/ stretch/main libpam-runtime all 1.1.8-3.6 [212 kB] Get:74 http://mirror-ubc.debian.org/debian/ stretch/main libss2 amd64 1.43.4-2 [67.7 kB] Get:75 http://mirror-ubc.debian.org/debian/ stretch/main lsb-base all 9.20161125 [27.9 kB] Get:76 http://mirror-ubc.debian.org/debian/ stretch/main multiarch-support amd64 2.24-11+deb9u3 [200 kB] Get:77 http://mirror-ubc.debian.org/debian/ stretch/main tzdata all 2018g-0+deb9u1 [270 kB] Get:78 http://mirror-ubc.debian.org/debian/ stretch/main libcap2 amd64 1:2.25-1 [16.8 kB] Get:79 http://mirror-ubc.debian.org/debian/ stretch/main libdb5.3 amd64 5.3.28-12+deb9u1 [679 kB] Get:80 http://mirror-ubc.debian.org/debian/ stretch/main insserv amd64 1.14.0-5.4+b1 [61.8 kB] Get:81 http://mirror-ubc.debian.org/debian/ stretch/main libcap2-bin amd64 1:2.25-1 [26.5 kB] Get:82 http://mirror-ubc.debian.org/debian/ stretch/main libusb-0.1-4 amd64 2:0.1.12-30 [22.9 kB] Get:83 http://mirror-ubc.debian.org/debian/ stretch/main startpar amd64 0.59-3.1 [22.5 kB] Get:84 http://mirror-ubc.debian.org/debian/ stretch/main libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:85 http://mirror-ubc.debian.org/debian/ stretch/main netbase all 5.4 [19.1 kB] Get:86 http://mirror-ubc.debian.org/debian/ stretch/main krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:87 http://mirror-ubc.debian.org/debian/ stretch/main libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:88 http://mirror-ubc.debian.org/debian/ stretch/main libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:89 http://mirror-ubc.debian.org/debian/ stretch/main libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:90 http://mirror-ubc.debian.org/debian/ stretch/main libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:91 http://mirror-ubc.debian.org/debian/ stretch/main libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:92 http://mirror-ubc.debian.org/debian/ stretch/main libidn11 amd64 1.33-1 [115 kB] Get:93 http://mirror-ubc.debian.org/debian/ stretch/main libffi6 amd64 3.2.1-6 [20.4 kB] Get:94 http://mirror-ubc.debian.org/debian/ stretch/main libp11-kit0 amd64 0.23.3-2 [111 kB] Get:95 http://mirror-ubc.debian.org/debian/ stretch/main libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3 [68.2 kB] Get:96 http://mirror-ubc.debian.org/debian/ stretch/main libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:97 http://mirror-ubc.debian.org/debian/ stretch/main libdata-stag-perl all 0.14-2 [448 kB] Get:98 http://mirror-ubc.debian.org/debian/ stretch/main bioperl all 1.7.1-2 [422 kB] Get:99 http://mirror-ubc.debian.org/debian/ stretch/main libbio-perl-perl all 1.7.1-2 [4605 kB] Get:100 http://mirror-ubc.debian.org/debian/ stretch/main bwa amd64 0.7.15-2 [194 kB] Get:101 http://mirror-ubc.debian.org/debian/ stretch/main ca-certificates all 20161130+nmu1+deb9u1 [182 kB] Get:102 http://mirror-ubc.debian.org/debian/ stretch/main dialign amd64 2.2.1-8 [138 kB] Get:103 http://mirror-ubc.debian.org/debian/ stretch/main dialign-tx amd64 1.0.2-9 [85.7 kB] Get:104 http://mirror-ubc.debian.org/debian/ stretch/main dialign-tx-data all 1.0.2-9 [869 kB] Get:105 http://mirror-ubc.debian.org/debian/ stretch/main libglib2.0-0 amd64 2.50.3-2 [2691 kB] Get:106 http://mirror-ubc.debian.org/debian/ stretch/main exonerate amd64 2.4.0-2 [1476 kB] Get:107 http://mirror-ubc.debian.org/debian/ stretch/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.3 [3126 kB] Get:108 http://mirror-ubc.debian.org/debian/ stretch/main infernal amd64 1.1.2-1 [22.0 MB] Get:109 http://mirror-ubc.debian.org/debian/ stretch/main kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:110 http://mirror-ubc.debian.org/debian/ stretch/main libalgorithm-c3-perl all 0.10-1 [12.0 kB] Get:111 http://mirror-ubc.debian.org/debian/ stretch/main libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:112 http://mirror-ubc.debian.org/debian/ stretch/main libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:113 http://mirror-ubc.debian.org/debian/ stretch/main libanyevent-cachedns-perl all 0.08-2 [7150 B] Get:114 http://mirror-ubc.debian.org/debian/ stretch/main libanyevent-http-perl all 2.23-1 [34.6 kB] Get:115 http://mirror-ubc.debian.org/debian/ stretch/main libapache2-reload-perl all 0.13-1 [17.4 kB] Get:116 http://mirror-ubc.debian.org/debian/ stretch/main libapr1 amd64 1.5.2-5 [96.6 kB] Get:117 http://mirror-ubc.debian.org/debian/ stretch/main libargtable2-0 amd64 13-1 [17.4 kB] Get:118 http://mirror-ubc.debian.org/debian/ stretch/main libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:119 http://mirror-ubc.debian.org/debian/ stretch/main libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:120 http://mirror-ubc.debian.org/debian/ stretch/main libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:121 http://mirror-ubc.debian.org/debian/ stretch/main libmodule-runtime-perl all 0.014-2 [18.0 kB] Get:122 http://mirror-ubc.debian.org/debian/ stretch/main libimport-into-perl all 1.002005-1 [11.6 kB] Get:123 http://mirror-ubc.debian.org/debian/ stretch/main librole-tiny-perl all 2.000005-1 [19.0 kB] Get:124 http://mirror-ubc.debian.org/debian/ stretch/main libstrictures-perl all 2.000003-1 [18.1 kB] Get:125 http://mirror-ubc.debian.org/debian/ stretch/main libmoo-perl all 2.002005-1 [67.0 kB] Get:126 http://mirror-ubc.debian.org/debian/ stretch/main libexporter-tiny-perl all 0.042-1 [32.4 kB] Get:127 http://mirror-ubc.debian.org/debian/ stretch/main libtype-tiny-perl all 1.000005-1 [271 kB] Get:128 http://mirror-ubc.debian.org/debian/ stretch/main libarray-compare-perl all 3.0.0-1 [14.0 kB] Get:129 http://mirror-ubc.debian.org/debian/ stretch/main libatm1 amd64 1:2.5.1-2 [71.0 kB] Get:130 http://mirror-ubc.debian.org/debian/ stretch/main libavahi-common-data amd64 0.6.32-2 [118 kB] Get:131 http://mirror-ubc.debian.org/debian/ stretch/main libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:132 http://mirror-ubc.debian.org/debian/ stretch/main libbio-asn1-entrezgene-perl all 1.720-1 [38.5 kB] Get:133 http://mirror-ubc.debian.org/debian/ stretch/main libbio-graphics-perl all 2.40-1 [611 kB] Get:134 http://mirror-ubc.debian.org/debian/ stretch/main libbsd0 amd64 0.8.3-1 [83.0 kB] Get:135 http://mirror-ubc.debian.org/debian/ stretch/main liberror-perl all 0.17024-1 [26.9 kB] Get:136 http://mirror-ubc.debian.org/debian/ stretch/main libcache-cache-perl all 1.08-2 [76.6 kB] Get:137 http://mirror-ubc.debian.org/debian/ stretch/main libcarp-clan-perl all 6.06-1 [12.9 kB] Get:138 http://mirror-ubc.debian.org/debian/ stretch/main libcdt5 amd64 2.38.0-17 [59.6 kB] Get:139 http://mirror-ubc.debian.org/debian/ stretch/main libcgi-fast-perl all 1:2.12-1 [11.2 kB] Get:140 http://mirror-ubc.debian.org/debian/ stretch/main libcgi-pm-perl all 4.35-1 [222 kB] Get:141 http://mirror-ubc.debian.org/debian/ stretch/main libcgi-session-perl all 4.48-3 [119 kB] Get:142 http://mirror-ubc.debian.org/debian/ stretch/main libcgraph6 amd64 2.38.0-17 [82.2 kB] Get:143 http://mirror-ubc.debian.org/debian/ stretch/main libclass-c3-perl all 0.32-1 [22.1 kB] Get:144 http://mirror-ubc.debian.org/debian/ stretch/main libclass-inspector-perl all 1.31-1 [18.7 kB] Get:145 http://mirror-ubc.debian.org/debian/ stretch/main libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:146 http://mirror-ubc.debian.org/debian/ stretch/main libdata-optlist-perl all 0.110-1 [10.6 kB] Get:147 http://mirror-ubc.debian.org/debian/ stretch/main libdate-manip-perl all 6.57-1 [911 kB] Get:148 http://mirror-ubc.debian.org/debian/ stretch/main libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:149 http://mirror-ubc.debian.org/debian/ stretch/main libdevel-symdump-perl all 2.17-1 [17.0 kB] Get:150 http://mirror-ubc.debian.org/debian/ stretch/main libencode-locale-perl all 1.05-1 [13.7 kB] Get:151 http://mirror-ubc.debian.org/debian/ stretch/main libfont-afm-perl all 1.20-2 [13.6 kB] Get:152 http://mirror-ubc.debian.org/debian/ stretch/main libglib2.0-data all 2.50.3-2 [2517 kB] Get:153 http://mirror-ubc.debian.org/debian/ stretch/main libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:154 http://mirror-ubc.debian.org/debian/ stretch/main libgraph-perl all 1:0.96-2 [126 kB] Get:155 http://mirror-ubc.debian.org/debian/ stretch/main libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:156 http://mirror-ubc.debian.org/debian/ stretch/main libipc-run-perl all 0.94-1+deb9u1 [99.1 kB] Get:157 http://mirror-ubc.debian.org/debian/ stretch/main libparse-recdescent-perl all 1.967013+dfsg-1 [159 kB] Get:158 http://mirror-ubc.debian.org/debian/ stretch/main libxml-twig-perl all 1:3.50-1 [179 kB] Get:159 http://mirror-ubc.debian.org/debian/ stretch/main libxml-xpath-perl all 1.40-1 [69.2 kB] Get:160 http://mirror-ubc.debian.org/debian/ stretch/main libgraphviz-perl all 2.22-1 [107 kB] Get:161 http://mirror-ubc.debian.org/debian/ stretch/main libgvpr2 amd64 2.38.0-17 [211 kB] Get:162 http://mirror-ubc.debian.org/debian/ stretch/main libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:163 http://mirror-ubc.debian.org/debian/ stretch/main libheap-perl all 0.80-3 [34.2 kB] Get:164 http://mirror-ubc.debian.org/debian/ stretch/main libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:165 http://mirror-ubc.debian.org/debian/ stretch/main libhtml-tree-perl all 5.03-2 [210 kB] Get:166 http://mirror-ubc.debian.org/debian/ stretch/main libhtml-format-perl all 2.12-1 [43.5 kB] Get:167 http://mirror-ubc.debian.org/debian/ stretch/main libhtml-tableextract-perl all 2.13-1 [30.7 kB] Get:168 http://mirror-ubc.debian.org/debian/ stretch/main liburi-perl all 1.71-1 [88.6 kB] Get:169 http://mirror-ubc.debian.org/debian/ stretch/main libhttp-message-perl all 6.11-1 [75.9 kB] Get:170 http://mirror-ubc.debian.org/debian/ stretch/main x11-common all 1:7.7+19 [251 kB] Get:171 http://mirror-ubc.debian.org/debian/ stretch/main libice6 amd64 2:1.0.9-2 [58.7 kB] Get:172 http://mirror-ubc.debian.org/debian/ stretch/main libijs-0.35 amd64 0.35-12 [18.4 kB] Get:173 http://mirror-ubc.debian.org/debian/ stretch/main libio-socket-ssl-perl all 2.044-1 [195 kB] Get:174 http://mirror-ubc.debian.org/debian/ stretch/main libio-stringy-perl all 2.111-2 [61.2 kB] Get:175 http://mirror-ubc.debian.org/debian/ stretch/main libjbig2dec0 amd64 0.13-4.1 [60.1 kB] Get:176 http://mirror-ubc.debian.org/debian/ stretch/main libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:177 http://mirror-ubc.debian.org/debian/ stretch/main libjs-jquery all 3.1.1-2 [154 kB] Get:178 http://mirror-ubc.debian.org/debian/ stretch/main libjson-perl all 2.90-1 [86.0 kB] Get:179 http://mirror-ubc.debian.org/debian/ stretch/main liblcms2-2 amd64 2.8-4+deb9u1 [143 kB] Get:180 http://mirror-ubc.debian.org/debian/ stretch/main libltdl7 amd64 2.4.6-2 [389 kB] Get:181 http://mirror-ubc.debian.org/debian/ stretch/main liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:182 http://mirror-ubc.debian.org/debian/ stretch/main libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:183 http://mirror-ubc.debian.org/debian/ stretch/main libmailtools-perl all 2.18-1 [88.5 kB] Get:184 http://mirror-ubc.debian.org/debian/ stretch/main libmath-derivative-perl all 0.04-2 [7208 B] Get:185 http://mirror-ubc.debian.org/debian/ stretch/main libmime-tools-perl all 5.508-1 [212 kB] Get:186 http://mirror-ubc.debian.org/debian/ stretch/main libmldbm-perl all 2.05-2 [18.4 kB] Get:187 http://mirror-ubc.debian.org/debian/ stretch/main libmodule-build-perl all 0.422000-1 [259 kB] Get:188 http://mirror-ubc.debian.org/debian/ stretch/main libmodule-pluggable-perl all 5.2-1 [25.7 kB] Get:189 http://mirror-ubc.debian.org/debian/ stretch/main libmodule-signature-perl all 0.81-1 [30.1 kB] Get:190 http://mirror-ubc.debian.org/debian/ stretch/main libnet-http-perl all 6.12-1 [23.8 kB] Get:191 http://mirror-ubc.debian.org/debian/ stretch/main libpackage-constants-perl all 0.06-1 [6248 B] Get:192 http://mirror-ubc.debian.org/debian/ stretch/main libthai-data all 0.1.26-1 [166 kB] Get:193 http://mirror-ubc.debian.org/debian/ stretch/main libthai0 amd64 0.1.26-1 [52.1 kB] Get:194 http://mirror-ubc.debian.org/debian/ stretch/main libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:195 http://mirror-ubc.debian.org/debian/ stretch/main libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:196 http://mirror-ubc.debian.org/debian/ stretch/main libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:197 http://mirror-ubc.debian.org/debian/ stretch/main libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:198 http://mirror-ubc.debian.org/debian/ stretch/main libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:199 http://mirror-ubc.debian.org/debian/ stretch/main libpathplan4 amd64 2.38.0-17 [62.8 kB] Get:200 http://mirror-ubc.debian.org/debian/ stretch/main libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:201 http://mirror-ubc.debian.org/debian/ stretch/main libpod-latex-perl all 0.61-2 [31.6 kB] Get:202 http://mirror-ubc.debian.org/debian/ stretch/main libregexp-common-perl all 2016060801-1 [178 kB] Get:203 http://mirror-ubc.debian.org/debian/ stretch/main libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:204 http://mirror-ubc.debian.org/debian/ stretch/main libsoap-lite-perl all 1.20-1 [259 kB] Get:205 http://mirror-ubc.debian.org/debian/ stretch/main libwww-perl all 6.15-1 [195 kB] Get:206 http://mirror-ubc.debian.org/debian/ stretch/main libsoftware-license-perl all 0.103012-1 [112 kB] Get:207 http://mirror-ubc.debian.org/debian/ stretch/main libssh2-1 amd64 1.7.0-1 [138 kB] Get:208 http://mirror-ubc.debian.org/debian/ stretch/main libstatistics-descriptive-perl all 3.0612-1 [41.9 kB] Get:209 http://mirror-ubc.debian.org/debian/ stretch/main libsvg-perl all 2.64-1 [69.8 kB] Get:210 http://mirror-ubc.debian.org/debian/ stretch/main libterm-ui-perl all 0.46-1 [19.4 kB] Get:211 http://mirror-ubc.debian.org/debian/ stretch/main libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:212 http://mirror-ubc.debian.org/debian/ stretch/main libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:213 http://mirror-ubc.debian.org/debian/ stretch/main libtiff5 amd64 4.0.8-2+deb9u2 [238 kB] Get:214 http://mirror-ubc.debian.org/debian/ stretch/main libtree-dagnode-perl all 1.29-1 [60.6 kB] Get:215 http://mirror-ubc.debian.org/debian/ stretch/main libxml-simple-perl all 2.22-1 [71.8 kB] Get:216 http://mirror-ubc.debian.org/debian/ stretch/main libvm-ec2-perl all 1.28-2 [768 kB] Get:217 http://mirror-ubc.debian.org/debian/ stretch/main libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:218 http://mirror-ubc.debian.org/debian/ stretch/main libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:219 http://mirror-ubc.debian.org/debian/ stretch/main libxcb1 amd64 1.12-1 [133 kB] Get:220 http://mirror-ubc.debian.org/debian/ stretch/main libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:221 http://mirror-ubc.debian.org/debian/ stretch/main libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:222 http://mirror-ubc.debian.org/debian/ stretch/main libxt6 amd64 1:1.1.5-1 [188 kB] Get:223 http://mirror-ubc.debian.org/debian/ stretch/main libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:224 http://mirror-ubc.debian.org/debian/ stretch/main libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:225 http://mirror-ubc.debian.org/debian/ stretch/main libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:226 http://mirror-ubc.debian.org/debian/ stretch/main libxcb-render0 amd64 1.12-1 [105 kB] Get:227 http://mirror-ubc.debian.org/debian/ stretch/main libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:228 http://mirror-ubc.debian.org/debian/ stretch/main libxdot4 amd64 2.38.0-17 [55.6 kB] Get:229 http://mirror-ubc.debian.org/debian/ stretch/main libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:230 http://mirror-ubc.debian.org/debian/ stretch/main libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:231 http://mirror-ubc.debian.org/debian/ stretch/main libxml-dom-perl all 1.44-2 [179 kB] Get:232 http://mirror-ubc.debian.org/debian/ stretch/main libxml-dom-xpath-perl all 0.14-2 [9622 B] Get:233 http://mirror-ubc.debian.org/debian/ stretch/main libxml-sax-writer-perl all 0.56-1 [23.7 kB] Get:234 http://mirror-ubc.debian.org/debian/ stretch/main libxslt1.1 amd64 1.1.29-2.1 [233 kB] Get:235 http://mirror-ubc.debian.org/debian/ stretch/main libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:236 http://mirror-ubc.debian.org/debian/ stretch/main libyaml-perl all 1.21-1 [64.8 kB] Get:237 http://mirror-ubc.debian.org/debian/ stretch/main mafft amd64 7.307-1 [889 kB] Get:238 http://mirror-ubc.debian.org/debian/ stretch/main muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:239 http://mirror-ubc.debian.org/debian/ stretch/main mysql-common all 5.8+1.0.2 [5608 B] Get:240 http://mirror-ubc.debian.org/debian/ stretch/main poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:241 http://mirror-ubc.debian.org/debian/ stretch/main proda amd64 1.0-10 [60.1 kB] Get:242 http://mirror-ubc.debian.org/debian/ stretch/main rename all 0.20-4 [12.5 kB] Get:243 http://mirror-ubc.debian.org/debian/ stretch/main rubygems-integration all 1.11 [4994 B] Get:244 http://mirror-ubc.debian.org/debian/ stretch/main shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:245 http://mirror-ubc.debian.org/debian/ stretch/main sim4 amd64 0.0.20121010-4 [396 kB] Get:246 http://mirror-ubc.debian.org/debian/ stretch/main ssl-cert all 1.0.39 [20.8 kB] Get:247 http://mirror-ubc.debian.org/debian/ stretch/main tm-align amd64 20160521+dfsg-2 [868 kB] Get:248 http://mirror-ubc.debian.org/debian/ stretch/main xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:249 http://mirror-ubc.debian.org/debian/ stretch/main xml-core all 0.17 [23.2 kB] Get:250 http://mirror-ubc.debian.org/debian/ stretch/main libset-scalar-perl all 1.29-2 [31.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.9 MB in 3s (22.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29297 files and directories currently installed.) Preparing to unpack .../base-files_9.9+deb9u6_amd64.deb ... Unpacking base-files (9.9+deb9u6) over (8+deb8u11) ... Setting up base-files (9.9+deb9u6) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Updating /etc/profile to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29300 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libtinfo5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libtinfo5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncursesw5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libncursesw5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.9+deb9u1_all.deb ... Unpacking sensible-utils (0.0.9+deb9u1) over (0.0.9+deb8u1) ... Processing triggers for mime-support (3.58) ... Setting up sensible-utils (0.0.9+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.1.1_amd64.deb ... Unpacking debianutils (4.8.1.1) over (4.4+b1) ... Setting up debianutils (4.8.1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29300 files and directories currently installed.) Preparing to unpack .../archives/bash_4.4-5_amd64.deb ... Unpacking bash (4.4-5) over (4.3-11+deb8u1) ... Setting up bash (4.4-5) ... Installing new version of config file /etc/skel/.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29302 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.29.2-1+deb9u1_amd64.deb ... Unpacking bsdutils (1:2.29.2-1+deb9u1) over (1:2.25.2-6) ... Setting up bsdutils (1:2.29.2-1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29302 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3_amd64.deb ... Unpacking coreutils (8.26-3) over (8.23-4) ... Setting up coreutils (8.26-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29305 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1_amd64.deb ... Unpacking tar (1.29b-1.1) over (1.27.1-2+deb8u1) ... Processing triggers for mime-support (3.58) ... Setting up tar (1.29b-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29306 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.2-1.2+b1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.2-1.2+b1) over (5.1.1alpha+20120614-2+b3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up liblzma5:amd64 (5.2.2-1.2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29306 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.25_amd64.deb ... Unpacking dpkg (1.18.25) over (1.17.27) ... Setting up dpkg (1.18.25) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29296 files and directories currently installed.) Preparing to unpack .../dash_0.5.8-2.4_amd64.deb ... Unpacking dash (0.5.8-2.4) over (0.5.7-4+b1) ... Setting up dash (0.5.8-2.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29296 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.5-3_amd64.deb ... Unpacking diffutils (1:3.5-3) over (1:3.3-1+b1) ... Setting up diffutils (1:3.5-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29296 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.4-2_amd64.deb ... Unpacking e2fslibs:amd64 (1.43.4-2) over (1.42.12-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up e2fslibs:amd64 (1.43.4-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29295 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.4-2_amd64.deb ... Unpacking e2fsprogs (1.43.4-2) over (1.42.12-2+b1) ... Setting up e2fsprogs (1.43.4-2) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29297 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20161106-2_amd64.deb ... Unpacking findutils (4.6.0+git+20161106-2) over (4.4.2-9+b1) ... Setting up findutils (4.6.0+git+20161106-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29295 files and directories currently installed.) Preparing to unpack .../archives/grep_2.27-2_amd64.deb ... Unpacking grep (2.27-2) over (2.20-4.1) ... Setting up grep (2.27-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29295 files and directories currently installed.) Preparing to unpack .../gzip_1.6-5+b1_amd64.deb ... Unpacking gzip (1.6-5+b1) over (1.6-4) ... Setting up gzip (1.6-5+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29296 files and directories currently installed.) Preparing to unpack .../hostname_3.18+b1_amd64.deb ... Unpacking hostname (3.18+b1) over (3.15) ... Setting up hostname (3.18+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29297 files and directories currently installed.) Preparing to unpack .../login_1%3a4.4-4.1_amd64.deb ... Unpacking login (1:4.4-4.1) over (1:4.2-3+deb8u4) ... Setting up login (1:4.4-4.1) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/securetty ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29297 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-3_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-3) over (2:8.35-3.3+deb8u4) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libpcre3:amd64 (2:8.39-3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29297 files and directories currently installed.) Preparing to unpack .../libselinux1_2.6-3+b3_amd64.deb ... Unpacking libselinux1:amd64 (2.6-3+b3) over (2.3-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libselinux1:amd64 (2.6-3+b3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29298 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libsmartcols1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29298 files and directories currently installed.) Preparing to unpack .../mount_2.29.2-1+deb9u1_amd64.deb ... Unpacking mount (2.29.2-1+deb9u1) over (2.25.2-6) ... Setting up mount (2.29.2-1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking ncurses-bin (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Setting up ncurses-bin (6.0+20161126-1+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29296 files and directories currently installed.) Preparing to unpack .../archives/sed_4.4-1_amd64.deb ... Unpacking sed (4.4-1) over (4.2.2-4+deb8u1) ... Setting up sed (4.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29297 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.227_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.227) over (0.192) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libdebconfclient0:amd64 (0.227) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29297 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.43_amd64.deb ... Unpacking base-passwd (3.5.43) over (3.5.37) ... Setting up base-passwd (3.5.43) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29297 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.0+20161126-1+deb9u2_all.deb ... Unpacking ncurses-base (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Setting up ncurses-base (6.0+20161126-1+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29298 files and directories currently installed.) Preparing to unpack .../systemd-sysv_232-25+deb9u6_amd64.deb ... Unpacking systemd-sysv (232-25+deb9u6) over (215-17+deb8u7) ... Setting up systemd-sysv (232-25+deb9u6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29298 files and directories currently installed.) Preparing to unpack .../libtext-wrapi18n-perl_0.06-7.1_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-7.1) over (0.06-7) ... Preparing to unpack .../debconf-i18n_1.5.61_all.deb ... Unpacking debconf-i18n (1.5.61) over (1.5.56+deb8u1) ... Preparing to unpack .../debconf_1.5.61_all.deb ... Unpacking debconf (1.5.61) over (1.5.56+deb8u1) ... Setting up debconf (1.5.61) ... Removing obsolete conffile /etc/bash_completion.d/debconf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29299 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.6.7-2_all.deb ... Unpacking libaudit-common (1:2.6.7-2) over (1:2.4-1) ... Setting up libaudit-common (1:2.6.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29299 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.7-3+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.7-3+b1) over (0.7.4-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libcap-ng0:amd64 (0.7.7-3+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29300 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.6.7-2_amd64.deb ... Unpacking libaudit1:amd64 (1:2.6.7-2) over (1:2.4-1+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libaudit1:amd64 (1:2.6.7-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29299 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-3.6_amd64.deb ... Unpacking libpam0g:amd64 (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libpam0g:amd64 (1.1.8-3.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29298 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-3.6_amd64.deb ... Unpacking libpam-modules-bin (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Setting up libpam-modules-bin (1.1.8-3.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29297 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.1.8-3.6_amd64.deb ... Unpacking libpam-modules:amd64 (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Setting up libpam-modules:amd64 (1.1.8-3.6) ... Installing new version of config file /etc/security/namespace.init ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29296 files and directories currently installed.) Preparing to unpack .../mawk_1.3.3-17+b3_amd64.deb ... Unpacking mawk (1.3.3-17+b3) over (1.3.3-17) ... Preparing to unpack .../libexpat1_2.2.0-2+deb9u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u1) over (2.1.0-6+deb8u4) ... Preparing to unpack .../archives/ucf_3.0036_all.deb ... Unpacking ucf (3.0036) over (3.0030) ... Preparing to unpack .../fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) over (2.34-1) ... Preparing to unpack .../fonts-liberation_1%3a1.07.4-2_all.deb ... Unpacking fonts-liberation (1:1.07.4-2) over (1.07.4-1) ... Preparing to unpack .../fontconfig-config_2.11.0-6.7_all.deb ... Unpacking fontconfig-config (2.11.0-6.7) over (2.11.0-6.3+deb8u1) ... Preparing to unpack .../libfontconfig1_2.11.0-6.7+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.7+b1) over (2.11.0-6.3+deb8u1) ... Preparing to unpack .../fontconfig_2.11.0-6.7+b1_amd64.deb ... Unpacking fontconfig (2.11.0-6.7+b1) over (2.11.0-6.3+deb8u1) ... Preparing to unpack .../poppler-data_0.4.7-8_all.deb ... Unpacking poppler-data (0.4.7-8) over (0.4.7-1) ... Preparing to unpack .../sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) over (1.26+nmu4) ... Preparing to unpack .../libsepol1_2.6-2_amd64.deb ... Unpacking libsepol1:amd64 (2.6-2) over (2.3-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libsepol1:amd64 (2.6-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29300 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.6-2_all.deb ... Unpacking libsemanage-common (2.6-2) over (2.3-1) ... Setting up libsemanage-common (2.6-2) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29300 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.6-2_amd64.deb ... Unpacking libsemanage1:amd64 (2.6-2) over (2.3-1+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libsemanage1:amd64 (2.6-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29299 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-8.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-8.1) over (1.0.6-7+b3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libbz2-1.0:amd64 (1.0.6-8.1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29298 files and directories currently installed.) Preparing to unpack .../libustr-1.0-1_1.0.4-6_amd64.deb ... Unpacking libustr-1.0-1:amd64 (1.0.4-6) over (1.0.4-3+b2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libustr-1.0-1:amd64 (1.0.4-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29293 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1_amd64.deb ... Unpacking passwd (1:4.4-4.1) over (1:4.2-3+deb8u4) ... Setting up passwd (1:4.4-4.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29302 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.115_all.deb ... Unpacking adduser (3.115) over (3.113+nmu3) ... Setting up adduser (3.115) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29300 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.26-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.26-2) over (1.17-3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libgpg-error0:amd64 (1.26-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u3_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u3) over (1.6.3-2+deb8u4) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-5_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-5) over (1:1.2.8.dfsg-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29300 files and directories currently installed.) Preparing to unpack .../gpgv_2.1.18-8~deb9u3_amd64.deb ... Unpacking gpgv (2.1.18-8~deb9u3) over (1.4.18-7+deb8u5) ... Setting up gpgv (2.1.18-8~deb9u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2017.5_all.deb ... Unpacking debian-archive-keyring (2017.5) over (2017.5~deb8u1) ... Setting up debian-archive-keyring (2017.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../libkmod2_23-2_amd64.deb ... Unpacking libkmod2:amd64 (23-2) over (18-3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libkmod2:amd64 (23-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../libslang2_2.3.1-5_amd64.deb ... Unpacking libslang2:amd64 (2.3.1-5) over (2.3.0-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libslang2:amd64 (2.3.1-5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29302 files and directories currently installed.) Preparing to unpack .../readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) over (6.3-8) ... Setting up readline-common (7.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29303 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.4.47-2+b2_amd64.deb ... Unpacking libattr1:amd64 (1:2.4.47-2+b2) over (1:2.4.47-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libattr1:amd64 (1:2.4.47-2+b2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29304 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-3+b1_amd64.deb ... Unpacking libacl1:amd64 (2.2.52-3+b1) over (2.2.52-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libacl1:amd64 (2.2.52-3+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29305 files and directories currently installed.) Preparing to unpack .../acl_2.2.52-3+b1_amd64.deb ... Unpacking acl (2.2.52-3+b1) over (2.2.52-2) ... Setting up acl (2.2.52-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29303 files and directories currently installed.) Preparing to unpack .../libuuid1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libuuid1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libuuid1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29303 files and directories currently installed.) Preparing to unpack .../libblkid1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libblkid1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libblkid1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29303 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.4-2_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2) over (1.42.12-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libcomerr2:amd64 (1.43.4-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29302 files and directories currently installed.) Preparing to unpack .../libmount1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libmount1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libmount1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29302 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.1.8-3.6_all.deb ... Unpacking libpam-runtime (1.1.8-3.6) over (1.1.8-3.1+deb8u2) ... Setting up libpam-runtime (1.1.8-3.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29302 files and directories currently installed.) Preparing to unpack .../libss2_1.43.4-2_amd64.deb ... Unpacking libss2:amd64 (1.43.4-2) over (1.42.12-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libss2:amd64 (1.43.4-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../lsb-base_9.20161125_all.deb ... Unpacking lsb-base (9.20161125) over (4.1+Debian13+nmu1) ... Setting up lsb-base (9.20161125) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.24-11+deb9u3_amd64.deb ... Unpacking multiarch-support (2.24-11+deb9u3) over (2.19-18+deb8u10) ... Setting up multiarch-support (2.24-11+deb9u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29301 files and directories currently installed.) Preparing to unpack .../tzdata_2018g-0+deb9u1_all.deb ... Unpacking tzdata (2018g-0+deb9u1) over (2018e-0+deb8u1) ... Setting up tzdata (2018g-0+deb9u1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Nov 14 14:41:43 UTC 2018. Universal Time is now: Wed Nov 14 14:41:43 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29303 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.25-1) over (1:2.24-8) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libcap2:amd64 (1:2.25-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29303 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-12+deb9u1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28-12+deb9u1) over (5.3.28-9+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libdb5.3:amd64 (5.3.28-12+deb9u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29303 files and directories currently installed.) Preparing to unpack .../insserv_1.14.0-5.4+b1_amd64.deb ... Unpacking insserv (1.14.0-5.4+b1) over (1.14.0-5) ... Setting up insserv (1.14.0-5.4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29305 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.25-1_amd64.deb ... Unpacking libcap2-bin (1:2.25-1) over (1:2.24-8) ... Setting up libcap2-bin (1:2.25-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29306 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-30_amd64.deb ... Unpacking libusb-0.1-4:amd64 (2:0.1.12-30) over (2:0.1.12-25) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libusb-0.1-4:amd64 (2:0.1.12-30) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29305 files and directories currently installed.) Preparing to unpack .../startpar_0.59-3.1_amd64.deb ... Unpacking startpar (0.59-3.1) over (0.59-3) ... Setting up startpar (0.59-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29305 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../archives/netbase_5.4_all.deb ... Unpacking netbase (5.4) over (5.3) ... Preparing to unpack .../krb5-locales_1.15-1+deb9u1_all.deb ... Unpacking krb5-locales (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libkeyutils1_1.5.9-9_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9) over (1.5.9-5+b1) ... Preparing to unpack .../libgssapi-krb5-2_1.15-1+deb9u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libkrb5-3_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libk5crypto3_1.15-1+deb9u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libkrb5support0_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libidn11_1.33-1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1) over (1.29-1+deb8u2) ... Preparing to unpack .../libffi6_3.2.1-6_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-6) over (3.1-2+deb8u1) ... Preparing to unpack .../libp11-kit0_0.23.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2) over (0.20.7-1) ... Preparing to unpack .../libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3) over (2.1.26.dfsg1-13+deb8u1) ... Preparing to unpack .../libtasn1-6_4.10-1.1+deb9u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.10-1.1+deb9u1) over (4.2-3+deb8u3) ... Preparing to unpack .../libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) over (0.13-1) ... Preparing to unpack .../bioperl_1.7.1-2_all.deb ... Unpacking bioperl (1.7.1-2) over (1.6.924-1) ... Preparing to unpack .../libbio-perl-perl_1.7.1-2_all.deb ... Unpacking libbio-perl-perl (1.7.1-2) over (1.6.924-1) ... Preparing to unpack .../bwa_0.7.15-2_amd64.deb ... Unpacking bwa (0.7.15-2) over (0.7.10-1) ... Preparing to unpack .../ca-certificates_20161130+nmu1+deb9u1_all.deb ... Unpacking ca-certificates (20161130+nmu1+deb9u1) over (20141019+deb8u3) ... Preparing to unpack .../dialign_2.2.1-8_amd64.deb ... Unpacking dialign (2.2.1-8) over (2.2.1-7) ... Preparing to unpack .../dialign-tx_1.0.2-9_amd64.deb ... Unpacking dialign-tx (1.0.2-9) over (1.0.2-7) ... Preparing to unpack .../dialign-tx-data_1.0.2-9_all.deb ... Unpacking dialign-tx-data (1.0.2-9) over (1.0.2-7) ... Preparing to unpack .../libglib2.0-0_2.50.3-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.50.3-2) over (2.42.1-1+b1) ... Preparing to unpack .../exonerate_2.4.0-2_amd64.deb ... Unpacking exonerate (2.4.0-2) over (2.2.0-6) ... Preparing to unpack .../gsfonts_1%3a8.11+urwcyr1.0.7~pre44-4.3_all.deb ... Unpacking gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) over (1:8.11+urwcyr1.0.7~pre44-4.2) ... Preparing to unpack .../infernal_1.1.2-1_amd64.deb ... Unpacking infernal (1.1.2-1) over (1.1.1-2) ... Preparing to unpack .../kalign_1%3a2.03+20110620-3_amd64.deb ... Unpacking kalign (1:2.03+20110620-3) over (1:2.03+20110620-2) ... Preparing to unpack .../libalgorithm-c3-perl_0.10-1_all.deb ... Unpacking libalgorithm-c3-perl (0.10-1) over (0.09-1) ... Preparing to unpack .../libalgorithm-diff-perl_1.19.03-1_all.deb ... Unpacking libalgorithm-diff-perl (1.19.03-1) over (1.19.02-3) ... Preparing to unpack .../libalgorithm-munkres-perl_0.08-3_all.deb ... Unpacking libalgorithm-munkres-perl (0.08-3) over (0.08-2) ... Preparing to unpack .../libanyevent-cachedns-perl_0.08-2_all.deb ... Unpacking libanyevent-cachedns-perl (0.08-2) over (0.08-1) ... Preparing to unpack .../libanyevent-http-perl_2.23-1_all.deb ... Unpacking libanyevent-http-perl (2.23-1) over (2.21-1) ... Preparing to unpack .../libapache2-reload-perl_0.13-1_all.deb ... Unpacking libapache2-reload-perl (0.13-1) over (0.12-3) ... Preparing to unpack .../libapr1_1.5.2-5_amd64.deb ... Unpacking libapr1:amd64 (1.5.2-5) over (1.5.1-3) ... Preparing to unpack .../libargtable2-0_13-1_amd64.deb ... Unpacking libargtable2-0 (13-1) over (12-1.1) ... Preparing to unpack .../libclass-method-modifiers-perl_2.12-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.12-1) over (2.11-1) ... Preparing to unpack .../libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) over (0.001011-1) ... Preparing to unpack .../libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) over (0.13-1) ... Preparing to unpack .../libmodule-runtime-perl_0.014-2_all.deb ... Unpacking libmodule-runtime-perl (0.014-2) over (0.014-1) ... Preparing to unpack .../libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) over (1.002004-1) ... Preparing to unpack .../librole-tiny-perl_2.000005-1_all.deb ... Unpacking librole-tiny-perl (2.000005-1) over (1.003004-1) ... Preparing to unpack .../libstrictures-perl_2.000003-1_all.deb ... Unpacking libstrictures-perl (2.000003-1) over (1.005005-1) ... Preparing to unpack .../libmoo-perl_2.002005-1_all.deb ... Unpacking libmoo-perl (2.002005-1) over (1.006001-1) ... Preparing to unpack .../libexporter-tiny-perl_0.042-1_all.deb ... Unpacking libexporter-tiny-perl (0.042-1) over (0.038-2) ... Preparing to unpack .../libtype-tiny-perl_1.000005-1_all.deb ... Unpacking libtype-tiny-perl (1.000005-1) over (1.000004-1) ... Preparing to unpack .../libarray-compare-perl_3.0.0-1_all.deb ... Unpacking libarray-compare-perl (3.0.0-1) over (2.11-1) ... Preparing to unpack .../libatm1_1%3a2.5.1-2_amd64.deb ... Unpacking libatm1:amd64 (1:2.5.1-2) over (1:2.5.1-1.5) ... Preparing to unpack .../libavahi-common-data_0.6.32-2_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.32-2) over (0.6.31-5) ... Preparing to unpack .../libavahi-common3_0.6.32-2_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.32-2) over (0.6.31-5) ... Preparing to unpack .../libbio-asn1-entrezgene-perl_1.720-1_all.deb ... Unpacking libbio-asn1-entrezgene-perl (1.720-1) over (1.700-1) ... Preparing to unpack .../libbio-graphics-perl_2.40-1_all.deb ... Unpacking libbio-graphics-perl (2.40-1) over (2.39-2) ... Preparing to unpack .../libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) over (0.7.0-2) ... Preparing to unpack .../liberror-perl_0.17024-1_all.deb ... Unpacking liberror-perl (0.17024-1) over (0.17-1.1) ... Preparing to unpack .../libcache-cache-perl_1.08-2_all.deb ... Unpacking libcache-cache-perl (1.08-2) over (1.07-2) ... Preparing to unpack .../libcarp-clan-perl_6.06-1_all.deb ... Unpacking libcarp-clan-perl (6.06-1) over (6.04-1) ... Preparing to unpack .../libcdt5_2.38.0-17_amd64.deb ... Unpacking libcdt5 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libcgi-fast-perl_1%3a2.12-1_all.deb ... Unpacking libcgi-fast-perl (1:2.12-1) over (1:2.04-1) ... Preparing to unpack .../libcgi-pm-perl_4.35-1_all.deb ... Unpacking libcgi-pm-perl (4.35-1) over (4.09-1) ... Preparing to unpack .../libcgi-session-perl_4.48-3_all.deb ... Unpacking libcgi-session-perl (4.48-3) over (4.48-1+deb8u1) ... Preparing to unpack .../libcgraph6_2.38.0-17_amd64.deb ... Unpacking libcgraph6 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libclass-c3-perl_0.32-1_all.deb ... Unpacking libclass-c3-perl (0.32-1) over (0.26-1) ... Preparing to unpack .../libclass-inspector-perl_1.31-1_all.deb ... Unpacking libclass-inspector-perl (1.31-1) over (1.28-1) ... Preparing to unpack .../libconvert-binhex-perl_1.125-1_all.deb ... Unpacking libconvert-binhex-perl (1.125-1) over (1.123-2) ... Preparing to unpack .../libdata-optlist-perl_0.110-1_all.deb ... Unpacking libdata-optlist-perl (0.110-1) over (0.109-1) ... Preparing to unpack .../libdate-manip-perl_6.57-1_all.deb ... Unpacking libdate-manip-perl (6.57-1) over (6.47-1) ... Preparing to unpack .../libdatrie1_0.2.10-4+b1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.10-4+b1) over (0.2.8-1) ... Preparing to unpack .../libdevel-symdump-perl_2.17-1_all.deb ... Unpacking libdevel-symdump-perl (2.17-1) over (2.12-1) ... Preparing to unpack .../libencode-locale-perl_1.05-1_all.deb ... Unpacking libencode-locale-perl (1.05-1) over (1.03-1) ... Preparing to unpack .../libfont-afm-perl_1.20-2_all.deb ... Unpacking libfont-afm-perl (1.20-2) over (1.20-1) ... Preparing to unpack .../libglib2.0-data_2.50.3-2_all.deb ... Unpacking libglib2.0-data (2.50.3-2) over (2.42.1-1) ... Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-1) over (2:6.0.0+dfsg-6) ... Preparing to unpack .../libgraph-perl_1%3a0.96-2_all.deb ... Unpacking libgraph-perl (1:0.96-2) over (1:0.96-1.1) ... Preparing to unpack .../libgraphite2-3_1.3.10-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.10-1) over (1.3.10-1~deb8u1) ... Preparing to unpack .../libipc-run-perl_0.94-1+deb9u1_all.deb ... Unpacking libipc-run-perl (0.94-1+deb9u1) over (0.92-1+deb8u1) ... Preparing to unpack .../libparse-recdescent-perl_1.967013+dfsg-1_all.deb ... Unpacking libparse-recdescent-perl (1.967013+dfsg-1) over (1.967009+dfsg-1) ... Preparing to unpack .../libxml-twig-perl_1%3a3.50-1_all.deb ... Unpacking libxml-twig-perl (1:3.50-1) over (1:3.48-1) ... Preparing to unpack .../libxml-xpath-perl_1.40-1_all.deb ... Unpacking libxml-xpath-perl (1.40-1) over (1.13-7) ... Preparing to unpack .../libgraphviz-perl_2.22-1_all.deb ... Unpacking libgraphviz-perl (2.22-1) over (2.16-1) ... Preparing to unpack .../libgvpr2_2.38.0-17_amd64.deb ... Unpacking libgvpr2 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libharfbuzz0b_1.4.2-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (1.4.2-1) over (0.9.35-2) ... Preparing to unpack .../libheap-perl_0.80-3_all.deb ... Unpacking libheap-perl (0.80-3) over (0.80-2) ... Preparing to unpack .../libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) over (3.20-2) ... Preparing to unpack .../libhtml-tree-perl_5.03-2_all.deb ... Unpacking libhtml-tree-perl (5.03-2) over (5.03-1) ... Preparing to unpack .../libhtml-format-perl_2.12-1_all.deb ... Unpacking libhtml-format-perl (2.12-1) over (2.11-1) ... Preparing to unpack .../libhtml-tableextract-perl_2.13-1_all.deb ... Unpacking libhtml-tableextract-perl (2.13-1) over (2.11-1) ... Preparing to unpack .../liburi-perl_1.71-1_all.deb ... Unpacking liburi-perl (1.71-1) over (1.64-1) ... Preparing to unpack .../libhttp-message-perl_6.11-1_all.deb ... Unpacking libhttp-message-perl (6.11-1) over (6.06-1) ... Preparing to unpack .../x11-common_1%3a7.7+19_all.deb ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking x11-common (1:7.7+19) over (1:7.7+7) ... Preparing to unpack .../libice6_2%3a1.0.9-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-2) over (2:1.0.9-1+b1) ... Preparing to unpack .../libijs-0.35_0.35-12_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-12) over (0.35-10) ... Preparing to unpack .../libio-socket-ssl-perl_2.044-1_all.deb ... Unpacking libio-socket-ssl-perl (2.044-1) over (2.002-2+deb8u3) ... Preparing to unpack .../libio-stringy-perl_2.111-2_all.deb ... Unpacking libio-stringy-perl (2.111-2) over (2.110-5) ... Preparing to unpack .../libjbig2dec0_0.13-4.1_amd64.deb ... Unpacking libjbig2dec0:amd64 (0.13-4.1) over (0.13-4~deb8u2) ... Preparing to unpack .../libjpeg62-turbo_1%3a1.5.1-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.1-2) over (1:1.3.1-12) ... Preparing to unpack .../libjs-jquery_3.1.1-2_all.deb ... Unpacking libjs-jquery (3.1.1-2) over (1.7.2+dfsg-3.2) ... Preparing to unpack .../libjson-perl_2.90-1_all.deb ... Unpacking libjson-perl (2.90-1) over (2.61-1) ... Preparing to unpack .../liblcms2-2_2.8-4+deb9u1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.8-4+deb9u1) over (2.6-3+deb8u1) ... Preparing to unpack .../libltdl7_2.4.6-2_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-2) over (2.4.2-1.11+b1) ... Preparing to unpack .../liblua5.1-0_5.1.5-8.1+b2_amd64.deb ... Unpacking liblua5.1-0:amd64 (5.1.5-8.1+b2) over (5.1.5-7.1) ... Preparing to unpack .../libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) over (1.01-3) ... Preparing to unpack .../libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) over (2.13-1) ... Preparing to unpack .../libmath-derivative-perl_0.04-2_all.deb ... Unpacking libmath-derivative-perl (0.04-2) over (0.01-6) ... Preparing to unpack .../libmime-tools-perl_5.508-1_all.deb ... Unpacking libmime-tools-perl (5.508-1) over (5.505-1) ... Preparing to unpack .../libmldbm-perl_2.05-2_all.deb ... Unpacking libmldbm-perl (2.05-2) over (2.05-1) ... Preparing to unpack .../libmodule-build-perl_0.422000-1_all.deb ... Unpacking libmodule-build-perl (0.422000-1) over (0.421000-2+deb8u1) ... Preparing to unpack .../libmodule-pluggable-perl_5.2-1_all.deb ... Unpacking libmodule-pluggable-perl (5.2-1) over (5.1-1) ... Preparing to unpack .../libmodule-signature-perl_0.81-1_all.deb ... Unpacking libmodule-signature-perl (0.81-1) over (0.73-1+deb8u2) ... Preparing to unpack .../libnet-http-perl_6.12-1_all.deb ... Unpacking libnet-http-perl (6.12-1) over (6.07-1) ... Preparing to unpack .../libpackage-constants-perl_0.06-1_all.deb ... Unpacking libpackage-constants-perl (0.06-1) over (0.04-1) ... Preparing to unpack .../libthai-data_0.1.26-1_all.deb ... Unpacking libthai-data (0.1.26-1) over (0.1.21-1) ... Preparing to unpack .../libthai0_0.1.26-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.26-1) over (0.1.21-1) ... Preparing to unpack .../libpango-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.40.5-1) over (1.36.8-3) ... Preparing to unpack .../libpangoft2-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.40.5-1) over (1.36.8-3) ... Preparing to unpack .../libpangocairo-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.40.5-1) over (1.36.8-3) ... Preparing to unpack .../libpaper1_1.1.24+nmu5_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu5) over (1.1.24+nmu4) ... Preparing to unpack .../libpaper-utils_1.1.24+nmu5_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu5) over (1.1.24+nmu4) ... Preparing to unpack .../libpathplan4_2.38.0-17_amd64.deb ... Unpacking libpathplan4 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libpixman-1-0_0.34.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.34.0-1) over (0.32.6-3) ... Preparing to unpack .../libpod-latex-perl_0.61-2_all.deb ... Leaving 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Leaving 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-2) over (0.61-1) ... Preparing to unpack .../libregexp-common-perl_2016060801-1_all.deb ... Unpacking libregexp-common-perl (2016060801-1) over (2013031301-1) ... Preparing to unpack .../libsm6_2%3a1.2.2-1+b3_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b3) over (2:1.2.2-1+b1) ... Preparing to unpack .../libsoap-lite-perl_1.20-1_all.deb ... Unpacking libsoap-lite-perl (1.20-1) over (1.11-1) ... Preparing to unpack .../libwww-perl_6.15-1_all.deb ... Unpacking libwww-perl (6.15-1) over (6.08-1) ... Preparing to unpack .../libsoftware-license-perl_0.103012-1_all.deb ... Unpacking libsoftware-license-perl (0.103012-1) over (0.103010-3) ... Preparing to unpack .../libssh2-1_1.7.0-1_amd64.deb ... Unpacking libssh2-1:amd64 (1.7.0-1) over (1.4.3-4.1+deb8u1) ... Preparing to unpack .../libstatistics-descriptive-perl_3.0612-1_all.deb ... Unpacking libstatistics-descriptive-perl (3.0612-1) over (3.0607-1) ... Preparing to unpack .../libsvg-perl_2.64-1_all.deb ... Unpacking libsvg-perl (2.64-1) over (2.59-1) ... Preparing to unpack .../libterm-ui-perl_0.46-1_all.deb ... Unpacking libterm-ui-perl (0.46-1) over (0.42-1) ... Preparing to unpack .../libtie-ixhash-perl_1.23-2_all.deb ... Unpacking libtie-ixhash-perl (1.23-2) over (1.23-1) ... Preparing to unpack .../libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) over (2.1-3.1) ... Preparing to unpack .../libtiff5_4.0.8-2+deb9u2_amd64.deb ... Unpacking libtiff5:amd64 (4.0.8-2+deb9u2) over (4.0.3-12.3+deb8u5) ... Preparing to unpack .../libtree-dagnode-perl_1.29-1_all.deb ... Unpacking libtree-dagnode-perl (1.29-1) over (1.22-1) ... Preparing to unpack .../libxml-simple-perl_2.22-1_all.deb ... Unpacking libxml-simple-perl (2.22-1) over (2.20-1) ... Preparing to unpack .../libvm-ec2-perl_1.28-2_all.deb ... Unpacking libvm-ec2-perl (1.28-2) over (1.28-1) ... Preparing to unpack .../libx11-data_2%3a1.6.4-3+deb9u1_all.deb ... Unpacking libx11-data (2:1.6.4-3+deb9u1) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) over (1:1.1.1-1+b1) ... Preparing to unpack .../libxcb1_1.12-1_amd64.deb ... Unpacking libxcb1:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libx11-6_2%3a1.6.4-3+deb9u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3+deb9u1) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) over (2:1.3.3-1) ... Preparing to unpack .../libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) over (1:1.1.4-1+b1) ... Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-2) over (2:1.1.2-1) ... Preparing to unpack .../libxpm4_1%3a3.5.12-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1) over (1:3.5.12-0+deb8u1) ... Preparing to unpack .../libxaw7_2%3a1.0.13-1+b2_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.13-1+b2) over (2:1.0.12-2+b1) ... Preparing to unpack .../libxcb-render0_1.12-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxcb-shm0_1.12-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxdot4_2.38.0-17_amd64.deb ... Unpacking libxdot4 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) over (1:0.9.8-1+b1) ... Preparing to unpack .../libxft2_2.3.2-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1+b2) over (2.3.2-1) ... Preparing to unpack .../libxml-dom-perl_1.44-2_all.deb ... Unpacking libxml-dom-perl (1.44-2) over (1.44-1) ... Preparing to unpack .../libxml-dom-xpath-perl_0.14-2_all.deb ... Unpacking libxml-dom-xpath-perl (0.14-2) over (0.14-1) ... Preparing to unpack .../libxml-sax-writer-perl_0.56-1_all.deb ... Unpacking libxml-sax-writer-perl (0.56-1) over (0.54-1) ... Preparing to unpack .../libxslt1.1_1.1.29-2.1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.29-2.1) over (1.1.28-2+deb8u3) ... Preparing to unpack .../libyaml-0-2_0.1.7-2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.7-2) over (0.1.6-3) ... Preparing to unpack .../libyaml-perl_1.21-1_all.deb ... Unpacking libyaml-perl (1.21-1) over (1.13-1) ... Preparing to unpack .../mafft_7.307-1_amd64.deb ... Unpacking mafft (7.307-1) over (7.205-1) ... Preparing to unpack .../muscle_1%3a3.8.31+dfsg-2_amd64.deb ... Unpacking muscle (1:3.8.31+dfsg-2) over (1:3.8.31-1) ... Preparing to unpack .../mysql-common_5.8+1.0.2_all.deb ... Unpacking mysql-common (5.8+1.0.2) over (5.5.60-0+deb8u1) ... Preparing to unpack .../poa_2.0+20060928-4+b1_amd64.deb ... Unpacking poa (2.0+20060928-4+b1) over (2.0+20060928-3) ... Preparing to unpack .../proda_1.0-10_amd64.deb ... Unpacking proda (1.0-10) over (1.0-8) ... Preparing to unpack .../archives/rename_0.20-4_all.deb ... Unpacking rename (0.20-4) over (0.20-3) ... Preparing to unpack .../rubygems-integration_1.11_all.deb ... Unpacking rubygems-integration (1.11) over (1.8) ... Preparing to unpack .../shared-mime-info_1.8-1+deb9u1_amd64.deb ... Unpacking shared-mime-info (1.8-1+deb9u1) over (1.3-1) ... Preparing to unpack .../sim4_0.0.20121010-4_amd64.deb ... Unpacking sim4 (0.0.20121010-4) over (0.0.20121010-1) ... Preparing to unpack .../ssl-cert_1.0.39_all.deb ... Unpacking ssl-cert (1.0.39) over (1.0.35) ... Preparing to unpack .../tm-align_20160521+dfsg-2_amd64.deb ... Unpacking tm-align (20160521+dfsg-2) over (20140601+dfsg-1) ... Preparing to unpack .../xdg-user-dirs_0.15-2+b1_amd64.deb ... Unpacking xdg-user-dirs (0.15-2+b1) over (0.15-2) ... Preparing to unpack .../archives/xml-core_0.17_all.deb ... Unpacking xml-core (0.17) over (0.13+nmu2) ... Preparing to unpack .../libset-scalar-perl_1.29-2_all.deb ... Unpacking libset-scalar-perl (1.29-2) over (1.29-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libtext-wrapi18n-perl (0.06-7.1) ... Setting up debconf-i18n (1.5.61) ... Setting up mawk (1.3.3-17+b3) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u1) ... Setting up ucf (3.0036) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up fonts-liberation (1:1.07.4-2) ... Setting up fontconfig-config (2.11.0-6.7) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up poppler-data (0.4.7-8) ... Setting up sgml-base (1.29) ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up netbase (5.4) ... Installing new version of config file /etc/services ... Setting up krb5-locales (1.15-1+deb9u1) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up libidn11:amd64 (1.33-1) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up bioperl (1.7.1-2) ... Setting up bwa (0.7.15-2) ... Setting up ca-certificates (20161130+nmu1+deb9u1) ... Updating certificates in /etc/ssl/certs... 20 added, 43 removed; done. Setting up dialign (2.2.1-8) ... Setting up dialign-tx-data (1.0.2-9) ... Setting up dialign-tx (1.0.2-9) ... Setting up libglib2.0-0:amd64 (2.50.3-2) ... No schema files found: doing nothing. Setting up exonerate (2.4.0-2) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... Setting up infernal (1.1.2-1) ... Setting up kalign (1:2.03+20110620-3) ... Setting up libalgorithm-c3-perl (0.10-1) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up libanyevent-cachedns-perl (0.08-2) ... Setting up libanyevent-http-perl (2.23-1) ... Setting up libapache2-reload-perl (0.13-1) ... Setting up libapr1:amd64 (1.5.2-5) ... Setting up libargtable2-0 (13-1) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libmodule-runtime-perl (0.014-2) ... Setting up libimport-into-perl (1.002005-1) ... Setting up librole-tiny-perl (2.000005-1) ... Setting up libstrictures-perl (2.000003-1) ... Setting up libmoo-perl (2.002005-1) ... Setting up libexporter-tiny-perl (0.042-1) ... Setting up libtype-tiny-perl (1.000005-1) ... Setting up libarray-compare-perl (3.0.0-1) ... Setting up libatm1:amd64 (1:2.5.1-2) ... Setting up libavahi-common-data:amd64 (0.6.32-2) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up libbio-asn1-entrezgene-perl (1.720-1) ... Setting up libbio-graphics-perl (2.40-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up liberror-perl (0.17024-1) ... Setting up libcache-cache-perl (1.08-2) ... Setting up libcarp-clan-perl (6.06-1) ... Setting up libcdt5 (2.38.0-17) ... Setting up libcgi-pm-perl (4.35-1) ... Setting up libcgi-fast-perl (1:2.12-1) ... Setting up libcgi-session-perl (4.48-3) ... Setting up libcgraph6 (2.38.0-17) ... Setting up libclass-c3-perl (0.32-1) ... Setting up libclass-inspector-perl (1.31-1) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libdate-manip-perl (6.57-1) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libdevel-symdump-perl (2.17-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libfont-afm-perl (1.20-2) ... Setting up libglib2.0-data (2.50.3-2) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libgraph-perl (1:0.96-2) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up libipc-run-perl (0.94-1+deb9u1) ... Setting up libparse-recdescent-perl (1.967013+dfsg-1) ... Setting up libxml-twig-perl (1:3.50-1) ... Setting up libxml-xpath-perl (1.40-1) ... Setting up libgraphviz-perl (2.22-1) ... Setting up libgvpr2 (2.38.0-17) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libheap-perl (0.80-3) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libhtml-format-perl (2.12-1) ... Setting up libhtml-tableextract-perl (2.13-1) ... Setting up liburi-perl (1.71-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up x11-common (1:7.7+19) ... Installing new version of config file /etc/init.d/x11-common ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of restart. Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libijs-0.35:amd64 (0.35-12) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libio-stringy-perl (2.111-2) ... Setting up libjbig2dec0:amd64 (0.13-4.1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libjs-jquery (3.1.1-2) ... Setting up libjson-perl (2.90-1) ... Setting up liblcms2-2:amd64 (2.8-4+deb9u1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libmath-derivative-perl (0.04-2) ... Setting up libmime-tools-perl (5.508-1) ... Setting up libmldbm-perl (2.05-2) ... Setting up libmodule-build-perl (0.422000-1) ... Setting up libmodule-pluggable-perl (5.2-1) ... Setting up libmodule-signature-perl (0.81-1) ... Setting up libnet-http-perl (6.12-1) ... Setting up libpackage-constants-perl (0.06-1) ... Setting up libthai-data (0.1.26-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up libpathplan4 (2.38.0-17) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libpod-latex-perl (0.61-2) ... Setting up libregexp-common-perl (2016060801-1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libwww-perl (6.15-1) ... Setting up libsoap-lite-perl (1.20-1) ... Setting up libsoftware-license-perl (0.103012-1) ... Setting up libssh2-1:amd64 (1.7.0-1) ... Setting up libstatistics-descriptive-perl (3.0612-1) ... Setting up libsvg-perl (2.64-1) ... Setting up libterm-ui-perl (0.46-1) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u2) ... Setting up libtree-dagnode-perl (1.29-1) ... Setting up libxml-simple-perl (2.22-1) ... Setting up libvm-ec2-perl (1.28-2) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxdot4 (2.38.0-17) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up libxml-dom-perl (1.44-2) ... Setting up libxml-dom-xpath-perl (0.14-2) ... Setting up libxml-sax-writer-perl (0.56-1) ... Setting up libxslt1.1:amd64 (1.1.29-2.1) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up libyaml-perl (1.21-1) ... Setting up mafft (7.307-1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up mysql-common (5.8+1.0.2) ... Removing obsolete conffile /etc/mysql/conf.d/.keepme ... Removing obsolete conffile /etc/mysql/my.cnf ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up poa (2.0+20060928-4+b1) ... Setting up proda (1.0-10) ... Setting up rename (0.20-4) ... Setting up rubygems-integration (1.11) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up sim4 (0.0.20121010-4) ... Setting up ssl-cert (1.0.39) ... Setting up tm-align (20160521+dfsg-2) ... Setting up xdg-user-dirs (0.15-2+b1) ... Setting up xml-core (0.17) ... Setting up libset-scalar-perl (1.29-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for ca-certificates (20161130+nmu1+deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for sgml-base (1.29) ... 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-y', 'upgrade'] 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-yf', 'dist-upgrade'] 3m7.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: ifupdown iproute2 isc-dhcp-client isc-dhcp-common libatm1 libdns-export100 libdns-export162 libelf1 libgnutls-deb0-28 libheap-perl libhogweed2 libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjasper1 liblua5.1-0 libmnl0 libmysqlclient18 libncbi6 libnettle4 libpng12-0 libregexp-common-perl libstaden-read1 libvpx1 libxtables10 libxtables12 lynx-cur Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: fonts-droid libperl5.20 perl-modules The following NEW packages will be installed: beignet-opencl-icd blends-common bzip2 dirmngr fonts-droid-fallback fonts-lato fonts-noto-mono fsa gawk gcc-6-base gnupg-agent gnupg-l10n hyphy-common hyphy-mpi init-system-helpers libann0 libapparmor1 libapt-pkg5.0 libassuan0 libb-hooks-endofscope-perl libbio-coordinate-perl libbytes-random-secure-perl libcpan-changes-perl libcrypt-random-seed-perl libdata-perl-perl libdivsufsort3 libdns-export162 libdrm-intel1 libdrm2 libelf1 libfabric1 libfdisk1 libfile-slurp-perl libgetopt-long-descriptive-perl libgnutls30 libgts-0.7-5 libgts-bin libhmsbeagle1v5 libhogweed4 libhts1 libhwloc-plugins libhwloc5 libibverbs1 libicu57 libidn2-0 libip4tc0 libisc-export160 libksba8 libldap-common liblua5.2-0 liblz4-1 libmagic-mgc libmariadbclient18 libmath-random-isaac-perl libmath-random-isaac-xs-perl libmnl0 libmodule-implementation-perl libmodule-load-conditional-perl libmoox-handlesvia-perl libmpfr4 libnamespace-autoclean-perl libnamespace-clean-perl libnettle6 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnpth0 libnuma1 libopenjp2-7 libopenmpi2 libpackage-stash-perl libpackage-stash-xs-perl libparams-validate-perl libpath-tiny-perl libpciaccess0 libperl5.24 libpng16-16 libpod-markdown-perl libprocps6 libpsl5 libpsm-infinipath1 librdmacm1 libreadline7 libruby2.3 libseccomp2 libsigsegv2 libssl1.0.2 libssl1.1 libstaden-read11 libsub-identify-perl libtry-tiny-perl libtypes-serialiser-perl libunicode-utf8-perl libunistring0 libvariable-magic-perl libwebp6 libxfixes3 libxtables12 lynx-common manpages med-config menu mummer ncbi-blast+-legacy ocl-icd-libopencl1 openmpi-bin openmpi-common perl-modules-5.24 perl-openssl-defaults phylip pinentry-curses publicsuffix rake raxml ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 unzip xz-utils zip The following packages will be upgraded: amap-align apache2 apache2-bin apache2-data apache2-utils apt bedtools bioperl-run blast2 bowtie clustalo clustalw dbus dmsetup emboss emboss-data emboss-lib file gbrowse gbrowse-calign ghostscript gnupg graphviz hmmer ifupdown init initscripts iproute2 isc-dhcp-client isc-dhcp-common libace-perl libalgorithm-diff-xs-perl libanyevent-perl libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libasync-interrupt-perl libavahi-client3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libc-bin libc6 libcairo2 libclass-c3-xs-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libcpan-meta-perl libcrypt-ssleay-perl libcryptsetup4 libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdate-calc-perl libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-lexalias-perl libdevmapper1.02.1 libev-perl libfcgi-perl libfreetype6 libgcc1 libgd-perl libgd3 libgfortran3 libgomp1 libgs9 libgs9-common libguard-perl libgvc6 libhpdf-2.2.1 libhtml-parser-perl libindirect-perl libio-pty-perl libipc-sharelite-perl libjson-xs-perl libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblocale-gettext-perl libmagic1 libmultidimensional-perl libncbi6 libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libpadwalker-perl libparams-classify-perl libparams-util-perl libpod-readme-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librtmp1 libsasl2-2 libsasl2-modules libsqlite3-0 libstdc++6 libstring-approx-perl libsub-name-perl libsystemd0 libterm-readkey-perl libtext-charwidth-perl libtext-iconv-perl libtext-soundex-perl libtype-tiny-xs-perl libudev1 libunicode-map-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libyaml-libyaml-perl lynx lynx-cur maq mime-support mustang ncbi-blast+ ncbi-data openssl perl perl-base perl-doc perl-tk phyml prank primer3 probalign probcons procps python python-minimal python2.7 python2.7-minimal ruby samtools sqlite3 systemd sysv-rc sysvinit-utils t-coffee tigr-glimmer udev util-linux wise wise-data 162 upgraded, 123 newly installed, 3 to remove and 0 not upgraded. Need to get 210 MB of archives. After this operation, 225 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ stretch/main libc6 amd64 2.24-11+deb9u3 [2693 kB] Get:2 http://mirror-ubc.debian.org/debian/ stretch/main libc-bin amd64 2.24-11+deb9u3 [779 kB] Get:3 http://mirror-ubc.debian.org/debian/ stretch/main gcc-6-base amd64 6.3.0-18+deb9u1 [180 kB] Get:4 http://mirror-ubc.debian.org/debian/ stretch/main libgcc1 amd64 1:6.3.0-18+deb9u1 [38.0 kB] Get:5 http://mirror-ubc.debian.org/debian/ stretch/main libfdisk1 amd64 2.29.2-1+deb9u1 [203 kB] Get:6 http://mirror-ubc.debian.org/debian/ stretch/main init-system-helpers all 1.48 [44.0 kB] Get:7 http://mirror-ubc.debian.org/debian/ stretch/main util-linux amd64 2.29.2-1+deb9u1 [981 kB] Get:8 http://mirror-ubc.debian.org/debian/ stretch/main sysvinit-utils amd64 2.88dsf-59.9 [68.4 kB] Get:9 http://mirror-ubc.debian.org/debian/ stretch/main initscripts amd64 2.88dsf-59.9 [84.5 kB] Get:10 http://mirror-ubc.debian.org/debian/ stretch/main sysv-rc all 2.88dsf-59.9 [67.4 kB] Get:11 http://mirror-ubc.debian.org/debian/ stretch/main perl-doc all 5.24.1-3+deb9u4 [7146 kB] Get:12 http://mirror-ubc.debian.org/debian/ stretch/main libclass-xsaccessor-perl amd64 1.19-2+b7 [36.7 kB] Get:13 http://mirror-ubc.debian.org/debian/ stretch/main liblua5.2-0 amd64 5.2.4-1.1+b2 [110 kB] Get:14 http://mirror-ubc.debian.org/debian/ stretch/main libnghttp2-14 amd64 1.18.1-1 [79.1 kB] Get:15 http://mirror-ubc.debian.org/debian/ stretch/main libssl1.0.2 amd64 1.0.2l-2+deb9u3 [1294 kB] Get:16 http://mirror-ubc.debian.org/debian/ stretch/main apache2-utils amd64 2.4.25-3+deb9u6 [217 kB] Get:17 http://mirror-ubc.debian.org/debian/ stretch/main apache2-data all 2.4.25-3+deb9u6 [162 kB] Get:18 http://mirror-ubc.debian.org/debian/ stretch/main apache2 amd64 2.4.25-3+deb9u6 [236 kB] Get:19 http://mirror-ubc.debian.org/debian/ stretch/main apache2-bin amd64 2.4.25-3+deb9u6 [1186 kB] Get:20 http://mirror-ubc.debian.org/debian/ stretch/main libcpan-meta-perl all 2.150010-1 [129 kB] Get:21 http://mirror-ubc.debian.org/debian/ stretch/main perl amd64 5.24.1-3+deb9u4 [218 kB] Get:22 http://mirror-ubc.debian.org/debian/ stretch/main perl-modules-5.24 all 5.24.1-3+deb9u4 [2724 kB] Get:23 http://mirror-ubc.debian.org/debian/ stretch/main libperl5.24 amd64 5.24.1-3+deb9u4 [3522 kB] Get:24 http://mirror-ubc.debian.org/debian/ stretch/main libapache2-mod-perl2 amd64 2.0.10-2 [886 kB] Get:25 http://mirror-ubc.debian.org/debian/ stretch/main libfcgi-perl amd64 0.78-2 [38.2 kB] Get:26 http://mirror-ubc.debian.org/debian/ stretch/main libnettle6 amd64 3.3-1+b2 [192 kB] Get:27 http://mirror-ubc.debian.org/debian/ stretch/main libhogweed4 amd64 3.3-1+b2 [136 kB] Get:28 http://mirror-ubc.debian.org/debian/ stretch/main libgnutls30 amd64 3.5.8-5+deb9u4 [896 kB] Get:29 http://mirror-ubc.debian.org/debian/ stretch/main ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:30 http://mirror-ubc.debian.org/debian/ stretch/main libstdc++6 amd64 6.3.0-18+deb9u1 [396 kB] Get:31 http://mirror-ubc.debian.org/debian/ stretch/main libmariadbclient18 amd64 10.1.26-0+deb9u1 [779 kB] Get:32 http://mirror-ubc.debian.org/debian/ stretch/main libdbd-mysql-perl amd64 4.041-2 [114 kB] Get:33 http://mirror-ubc.debian.org/debian/ stretch/main libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:34 http://mirror-ubc.debian.org/debian/ stretch/main libssl1.1 amd64 1.1.0f-3+deb9u2 [1344 kB] Get:35 http://mirror-ubc.debian.org/debian/ stretch/main libcrypt-random-seed-perl all 0.03-1 [22.5 kB] Get:36 http://mirror-ubc.debian.org/debian/ stretch/main libmath-random-isaac-perl all 1.003-1 [22.6 kB] Get:37 http://mirror-ubc.debian.org/debian/ stretch/main libbytes-random-secure-perl all 0.28-1 [29.4 kB] Get:38 http://mirror-ubc.debian.org/debian/ stretch/main libcrypt-ssleay-perl amd64 0.73.04-2 [57.1 kB] Get:39 http://mirror-ubc.debian.org/debian/ stretch/main libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:40 http://mirror-ubc.debian.org/debian/ stretch/main perl-openssl-defaults amd64 3 [6782 B] Get:41 http://mirror-ubc.debian.org/debian/ stretch/main libyaml-libyaml-perl amd64 0.63-2 [68.8 kB] Get:42 http://mirror-ubc.debian.org/debian/ stretch/main libsub-name-perl amd64 0.21-1 [13.1 kB] Get:43 http://mirror-ubc.debian.org/debian/ stretch/main libindirect-perl amd64 0.37-1+b1 [28.1 kB] Get:44 http://mirror-ubc.debian.org/debian/ stretch/main libhtml-parser-perl amd64 3.72-3 [104 kB] Get:45 http://mirror-ubc.debian.org/debian/ stretch/main libpng16-16 amd64 1.6.28-1 [280 kB] Get:46 http://mirror-ubc.debian.org/debian/ stretch/main perl-tk amd64 1:804.033-1+b3 [1943 kB] Get:47 http://mirror-ubc.debian.org/debian/ stretch/main libdbd-pg-perl amd64 3.5.3-1+b2 [203 kB] Get:48 http://mirror-ubc.debian.org/debian/ stretch/main libbit-vector-perl amd64 7.4-1+b2 [146 kB] Get:49 http://mirror-ubc.debian.org/debian/ stretch/main libdate-calc-perl all 6.4-1 [194 kB] Get:50 http://mirror-ubc.debian.org/debian/ stretch/main libdate-calc-xs-perl amd64 6.4-1+b2 [54.3 kB] Get:51 http://mirror-ubc.debian.org/debian/ stretch/main libreadline7 amd64 7.0-3 [151 kB] Get:52 http://mirror-ubc.debian.org/debian/ stretch/main sqlite3 amd64 3.16.2-5+deb9u1 [784 kB] Get:53 http://mirror-ubc.debian.org/debian/ stretch/main libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:54 http://mirror-ubc.debian.org/debian/ stretch/main libdbd-sqlite3-perl amd64 1.54-1 [164 kB] Get:55 http://mirror-ubc.debian.org/debian/ stretch/main libguard-perl amd64 1.023-1+b2 [15.8 kB] Get:56 http://mirror-ubc.debian.org/debian/ stretch/main libdbi-perl amd64 1.636-1+b1 [766 kB] Get:57 http://mirror-ubc.debian.org/debian/ stretch/main libstaden-read11 amd64 1.14.8-2 [311 kB] Get:58 http://mirror-ubc.debian.org/debian/ stretch/main libbio-scf-perl amd64 1.03-3 [20.3 kB] Get:59 http://mirror-ubc.debian.org/debian/ stretch/main libparams-classify-perl amd64 0.013-6+b1 [24.4 kB] Get:60 http://mirror-ubc.debian.org/debian/ stretch/main libparams-util-perl amd64 1.07-3+b1 [22.7 kB] Get:61 http://mirror-ubc.debian.org/debian/ stretch/main libpadwalker-perl amd64 2.2-2+b1 [19.7 kB] Get:62 http://mirror-ubc.debian.org/debian/ stretch/main libstring-approx-perl amd64 3.27-1+b4 [40.0 kB] Get:63 http://mirror-ubc.debian.org/debian/ stretch/main libconvert-binary-c-perl amd64 0.78-1+b1 [271 kB] Get:64 http://mirror-ubc.debian.org/debian/ stretch/main libmultidimensional-perl amd64 0.012-1+b1 [8146 B] Get:65 http://mirror-ubc.debian.org/debian/ stretch/main libtext-charwidth-perl amd64 0.04-7+b5 [9870 B] Get:66 http://mirror-ubc.debian.org/debian/ stretch/main libbareword-filehandles-perl amd64 0.004-1+b1 [8572 B] Get:67 http://mirror-ubc.debian.org/debian/ stretch/main liblexical-sealrequirehints-perl amd64 0.010-1+b1 [15.9 kB] Get:68 http://mirror-ubc.debian.org/debian/ stretch/main libclone-perl amd64 0.38-2+b1 [13.6 kB] Get:69 http://mirror-ubc.debian.org/debian/ stretch/main perl-base amd64 5.24.1-3+deb9u4 [1345 kB] Get:70 http://mirror-ubc.debian.org/debian/ stretch/main liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:71 http://mirror-ubc.debian.org/debian/ stretch/main libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:72 http://mirror-ubc.debian.org/debian/ stretch/main libace-perl amd64 1.92-4+b1 [286 kB] Get:73 http://mirror-ubc.debian.org/debian/ stretch/main libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:74 http://mirror-ubc.debian.org/debian/ stretch/main libxml-libxslt-perl amd64 1.95-1+b1 [46.8 kB] Get:75 http://mirror-ubc.debian.org/debian/ stretch/main libbsd-resource-perl amd64 1.2910-1+b1 [33.7 kB] Get:76 http://mirror-ubc.debian.org/debian/ stretch/main libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:77 http://mirror-ubc.debian.org/debian/ stretch/main libterm-readkey-perl amd64 2.37-1 [27.2 kB] Get:78 http://mirror-ubc.debian.org/debian/ stretch/main libgd-perl amd64 2.53-3 [177 kB] Get:79 http://mirror-ubc.debian.org/debian/ stretch/main libdevel-caller-perl amd64 2.06-1+b4 [11.8 kB] Get:80 http://mirror-ubc.debian.org/debian/ stretch/main libunicode-map-perl amd64 0.112-11+b3 [145 kB] Get:81 http://mirror-ubc.debian.org/debian/ stretch/main libtype-tiny-xs-perl amd64 0.012-1+b2 [26.8 kB] Get:82 http://mirror-ubc.debian.org/debian/ stretch/main libtext-soundex-perl amd64 3.4-1+b4 [12.8 kB] Get:83 http://mirror-ubc.debian.org/debian/ stretch/main libtypes-serialiser-perl all 1.0-1 [12.7 kB] Get:84 http://mirror-ubc.debian.org/debian/ stretch/main libjson-xs-perl amd64 3.030-1 [91.6 kB] Get:85 http://mirror-ubc.debian.org/debian/ stretch/main libev-perl amd64 4.22-1+b1 [240 kB] Get:86 http://mirror-ubc.debian.org/debian/ stretch/main libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:87 http://mirror-ubc.debian.org/debian/ stretch/main libb-hooks-op-check-perl amd64 0.19-3+b1 [10.4 kB] Get:88 http://mirror-ubc.debian.org/debian/ stretch/main libasync-interrupt-perl amd64 1.21-1+b2 [33.9 kB] Get:89 http://mirror-ubc.debian.org/debian/ stretch/main libio-pty-perl amd64 1:1.08-1.1+b2 [33.6 kB] Get:90 http://mirror-ubc.debian.org/debian/ stretch/main libanyevent-perl amd64 7.130-2 [391 kB] Get:91 http://mirror-ubc.debian.org/debian/ stretch/main gbrowse-calign amd64 2.56+dfsg-2 [35.8 kB] Get:92 http://mirror-ubc.debian.org/debian/ stretch/main libipc-sharelite-perl amd64 0.17-4 [24.0 kB] Get:93 http://mirror-ubc.debian.org/debian/ stretch/main libclass-c3-xs-perl amd64 0.14-1+b1 [16.3 kB] Get:94 http://mirror-ubc.debian.org/debian/ stretch/main libdevel-lexalias-perl amd64 0.05-1+b4 [8752 B] Get:95 http://mirror-ubc.debian.org/debian/ stretch/main liblist-moreutils-perl amd64 0.416-1+b1 [63.0 kB] Get:96 http://mirror-ubc.debian.org/debian/ stretch/main libcommon-sense-perl amd64 3.74-2 [23.6 kB] Get:97 http://mirror-ubc.debian.org/debian/ stretch/main blast2 all 1:2.6.0-1 [9084 B] Get:98 http://mirror-ubc.debian.org/debian/ stretch/main ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:99 http://mirror-ubc.debian.org/debian/ stretch/main libncbi6 amd64 6.1.20170106-2 [4021 kB] Get:100 http://mirror-ubc.debian.org/debian/ stretch/main ncbi-data all 6.1.20170106-2 [3692 kB] Get:101 http://mirror-ubc.debian.org/debian/ stretch/main mime-support all 3.60 [36.7 kB] Get:102 http://mirror-ubc.debian.org/debian/ stretch/main python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:103 http://mirror-ubc.debian.org/debian/ stretch/main libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:104 http://mirror-ubc.debian.org/debian/ stretch/main python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:105 http://mirror-ubc.debian.org/debian/ stretch/main libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:106 http://mirror-ubc.debian.org/debian/ stretch/main python-minimal amd64 2.7.13-2 [40.5 kB] Get:107 http://mirror-ubc.debian.org/debian/ stretch/main python amd64 2.7.13-2 [154 kB] Get:108 http://mirror-ubc.debian.org/debian/ stretch/main libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:109 http://mirror-ubc.debian.org/debian/ stretch/main libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:110 http://mirror-ubc.debian.org/debian/ stretch/main libldap-common all 2.4.44+dfsg-5+deb9u2 [85.5 kB] Get:111 http://mirror-ubc.debian.org/debian/ stretch/main libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3 [105 kB] Get:112 http://mirror-ubc.debian.org/debian/ stretch/main libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u2 [219 kB] Get:113 http://mirror-ubc.debian.org/debian/ stretch/main libaprutil1-ldap amd64 1.5.4-3 [17.4 kB] Get:114 http://mirror-ubc.debian.org/debian/ stretch/main libaprutil1-dbd-sqlite3 amd64 1.5.4-3 [19.3 kB] Get:115 http://mirror-ubc.debian.org/debian/ stretch/main libaprutil1 amd64 1.5.4-3 [85.8 kB] Get:116 http://mirror-ubc.debian.org/debian/ stretch/main liblz4-1 amd64 0.0~r131-2+b1 [33.3 kB] Get:117 http://mirror-ubc.debian.org/debian/ stretch/main libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:118 http://mirror-ubc.debian.org/debian/ stretch/main libip4tc0 amd64 1.6.0+snapshot20161117-6 [67.8 kB] Get:119 http://mirror-ubc.debian.org/debian/ stretch/main libseccomp2 amd64 2.3.1-2.1+deb9u1 [40.7 kB] Get:120 http://mirror-ubc.debian.org/debian/ stretch/main libelf1 amd64 0.168-1 [157 kB] Get:121 http://mirror-ubc.debian.org/debian/ stretch/main libmnl0 amd64 1.0.4-2 [12.2 kB] Get:122 http://mirror-ubc.debian.org/debian/ stretch/main iproute2 amd64 4.9.0-1+deb9u1 [635 kB] Get:123 http://mirror-ubc.debian.org/debian/ stretch/main libsystemd0 amd64 232-25+deb9u6 [280 kB] Get:124 http://mirror-ubc.debian.org/debian/ stretch/main libudev1 amd64 232-25+deb9u6 [125 kB] Get:125 http://mirror-ubc.debian.org/debian/ stretch/main systemd amd64 232-25+deb9u6 [2468 kB] Get:126 http://mirror-ubc.debian.org/debian/ stretch/main ifupdown amd64 0.8.19 [76.8 kB] Get:127 http://mirror-ubc.debian.org/debian/ stretch/main udev amd64 232-25+deb9u6 [1112 kB] Get:128 http://mirror-ubc.debian.org/debian/ stretch/main libdevmapper1.02.1 amd64 2:1.02.137-2 [170 kB] Get:129 http://mirror-ubc.debian.org/debian/ stretch/main dmsetup amd64 2:1.02.137-2 [107 kB] Get:130 http://mirror-ubc.debian.org/debian/ stretch/main libcryptsetup4 amd64 2:1.7.3-4 [109 kB] Get:131 http://mirror-ubc.debian.org/debian/ stretch/main libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:132 http://mirror-ubc.debian.org/debian/ stretch/main procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:133 http://mirror-ubc.debian.org/debian/ stretch/main libicu57 amd64 57.1-6+deb9u2 [7700 kB] Get:134 http://mirror-ubc.debian.org/debian/ stretch/main libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:135 http://mirror-ubc.debian.org/debian/ stretch/main libpq5 amd64 9.6.10-0+deb9u1 [136 kB] Get:136 http://mirror-ubc.debian.org/debian/ stretch/main libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:137 http://mirror-ubc.debian.org/debian/ stretch/main libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:138 http://mirror-ubc.debian.org/debian/ stretch/main libpsl5 amd64 0.17.0-3 [41.8 kB] Get:139 http://mirror-ubc.debian.org/debian/ stretch/main librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:140 http://mirror-ubc.debian.org/debian/ stretch/main libcurl3-gnutls amd64 7.52.1-5+deb9u8 [290 kB] Get:141 http://mirror-ubc.debian.org/debian/ stretch/main libwebp6 amd64 0.5.2-1 [235 kB] Get:142 http://mirror-ubc.debian.org/debian/ stretch/main libfreetype6 amd64 2.6.3-3.2 [438 kB] Get:143 http://mirror-ubc.debian.org/debian/ stretch/main libgd3 amd64 2.2.4-2+deb9u3 [132 kB] Get:144 http://mirror-ubc.debian.org/debian/ stretch/main libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:145 http://mirror-ubc.debian.org/debian/ stretch/main libbio-coordinate-perl all 1.7.1-1 [56.0 kB] Get:146 http://mirror-ubc.debian.org/debian/ stretch/main gbrowse all 2.56+dfsg-2 [2373 kB] Get:147 http://mirror-ubc.debian.org/debian/ stretch/main init amd64 1.48 [12.0 kB] Get:148 http://mirror-ubc.debian.org/debian/ stretch/main libapt-pkg5.0 amd64 1.4.8 [917 kB] Get:149 http://mirror-ubc.debian.org/debian/ stretch/main apt amd64 1.4.8 [1232 kB] Get:150 http://mirror-ubc.debian.org/debian/ stretch/main fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:151 http://mirror-ubc.debian.org/debian/ stretch/main fonts-lato all 2.0-1 [2684 kB] Get:152 http://mirror-ubc.debian.org/debian/ stretch/main libmpfr4 amd64 3.1.5-1 [556 kB] Get:153 http://mirror-ubc.debian.org/debian/ stretch/main libsigsegv2 amd64 2.10-5 [28.9 kB] Get:154 http://mirror-ubc.debian.org/debian/ stretch/main gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:155 http://mirror-ubc.debian.org/debian/ stretch/main libassuan0 amd64 2.4.3-2 [42.5 kB] Get:156 http://mirror-ubc.debian.org/debian/ stretch/main pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:157 http://mirror-ubc.debian.org/debian/ stretch/main libnpth0 amd64 1.3-1 [14.6 kB] Get:158 http://mirror-ubc.debian.org/debian/ stretch/main gnupg-agent amd64 2.1.18-8~deb9u3 [554 kB] Get:159 http://mirror-ubc.debian.org/debian/ stretch/main libksba8 amd64 1.3.5-2 [99.7 kB] Get:160 http://mirror-ubc.debian.org/debian/ stretch/main gnupg amd64 2.1.18-8~deb9u3 [1128 kB] Get:161 http://mirror-ubc.debian.org/debian/ stretch/main libisc-export160 amd64 1:9.10.3.dfsg.P4-12.3+deb9u4 [335 kB] Get:162 http://mirror-ubc.debian.org/debian/ stretch/main libdns-export162 amd64 1:9.10.3.dfsg.P4-12.3+deb9u4 [851 kB] Get:163 http://mirror-ubc.debian.org/debian/ stretch/main isc-dhcp-client amd64 4.3.5-3+deb9u1 [325 kB] Get:164 http://mirror-ubc.debian.org/debian/ stretch/main isc-dhcp-common amd64 4.3.5-3+deb9u1 [136 kB] Get:165 http://mirror-ubc.debian.org/debian/ stretch/main bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:166 http://mirror-ubc.debian.org/debian/ stretch/main dbus amd64 1.10.26-0+deb9u1 [210 kB] Get:167 http://mirror-ubc.debian.org/debian/ stretch/main libdbus-1-3 amd64 1.10.26-0+deb9u1 [194 kB] Get:168 http://mirror-ubc.debian.org/debian/ stretch/main file amd64 1:5.30-1+deb9u2 [64.1 kB] Get:169 http://mirror-ubc.debian.org/debian/ stretch/main libmagic1 amd64 1:5.30-1+deb9u2 [111 kB] Get:170 http://mirror-ubc.debian.org/debian/ stretch/main libmagic-mgc amd64 1:5.30-1+deb9u2 [222 kB] Get:171 http://mirror-ubc.debian.org/debian/ stretch/main manpages all 4.10-2 [1222 kB] Get:172 http://mirror-ubc.debian.org/debian/ stretch/main xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:173 http://mirror-ubc.debian.org/debian/ stretch/main amap-align amd64 2.2-6 [129 kB] Get:174 http://mirror-ubc.debian.org/debian/ stretch/main bedtools amd64 2.26.0+dfsg-3 [584 kB] Get:175 http://mirror-ubc.debian.org/debian/ stretch/main bioperl-run all 1.7.1-3 [44.2 kB] Get:176 http://mirror-ubc.debian.org/debian/ stretch/main libbio-perl-run-perl all 1.7.1-3 [816 kB] Get:177 http://mirror-ubc.debian.org/debian/ stretch/main menu amd64 2.1.47+b1 [380 kB] Get:178 http://mirror-ubc.debian.org/debian/ stretch/main blends-common all 0.6.96 [23.3 kB] Get:179 http://mirror-ubc.debian.org/debian/ stretch/main clustalo amd64 1.2.4-1 [263 kB] Get:180 http://mirror-ubc.debian.org/debian/ stretch/main clustalw amd64 2.1+lgpl-5 [286 kB] Get:181 http://mirror-ubc.debian.org/debian/ stretch/main dirmngr amd64 2.1.18-8~deb9u3 [597 kB] Get:182 http://mirror-ubc.debian.org/debian/ stretch/main libhpdf-2.2.1 amd64 2.2.1-1.1+b1 [319 kB] Get:183 http://mirror-ubc.debian.org/debian/ stretch/main emboss amd64 6.6.0+dfsg-6 [1058 kB] Get:184 http://mirror-ubc.debian.org/debian/ stretch/main emboss-lib amd64 6.6.0+dfsg-6 [2773 kB] Get:185 http://mirror-ubc.debian.org/debian/ stretch/main emboss-data all 6.6.0+dfsg-6 [61.1 MB] Get:186 http://mirror-ubc.debian.org/debian/ stretch/main fonts-noto-mono all 20161116-1 [79.2 kB] Get:187 http://mirror-ubc.debian.org/debian/ stretch/main mummer amd64 3.23+dfsg-2 [809 kB] Get:188 http://mirror-ubc.debian.org/debian/ stretch/main fsa amd64 1.15.9+dfsg-3 [753 kB] Get:189 http://mirror-ubc.debian.org/debian/ stretch/main libcupsimage2 amd64 2.2.1-8+deb9u2 [122 kB] Get:190 http://mirror-ubc.debian.org/debian/ stretch/main libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:191 http://mirror-ubc.debian.org/debian/ stretch/main libcups2 amd64 2.2.1-8+deb9u2 [306 kB] Get:192 http://mirror-ubc.debian.org/debian/ stretch/main libopenjp2-7 amd64 2.1.2-1.1+deb9u2 [122 kB] Get:193 http://mirror-ubc.debian.org/debian/ stretch/main ghostscript amd64 9.20~dfsg-3.2+deb9u5 [98.2 kB] Get:194 http://mirror-ubc.debian.org/debian/ stretch/main libgs9 amd64 9.20~dfsg-3.2+deb9u5 [2071 kB] Get:195 http://mirror-ubc.debian.org/debian/ stretch/main libgs9-common all 9.20~dfsg-3.2+deb9u5 [5164 kB] Get:196 http://mirror-ubc.debian.org/debian/ stretch/main libann0 amd64 1.1.2+doc-6 [24.9 kB] Get:197 http://mirror-ubc.debian.org/debian/ stretch/main libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:198 http://mirror-ubc.debian.org/debian/ stretch/main libcairo2 amd64 1.14.8-1 [771 kB] Get:199 http://mirror-ubc.debian.org/debian/ stretch/main libgvc6 amd64 2.38.0-17 [639 kB] Get:200 http://mirror-ubc.debian.org/debian/ stretch/main graphviz amd64 2.38.0-17 [802 kB] Get:201 http://mirror-ubc.debian.org/debian/ stretch/main libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:202 http://mirror-ubc.debian.org/debian/ stretch/main hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:203 http://mirror-ubc.debian.org/debian/ stretch/main hyphy-common all 2.2.7+dfsg-1 [619 kB] Get:204 http://mirror-ubc.debian.org/debian/ stretch/main libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:205 http://mirror-ubc.debian.org/debian/ stretch/main libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:206 http://mirror-ubc.debian.org/debian/ stretch/main libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:207 http://mirror-ubc.debian.org/debian/ stretch/main libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:208 http://mirror-ubc.debian.org/debian/ stretch/main librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:209 http://mirror-ubc.debian.org/debian/ stretch/main libfabric1 amd64 1.4.0-1 [259 kB] Get:210 http://mirror-ubc.debian.org/debian/ stretch/main libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:211 http://mirror-ubc.debian.org/debian/ stretch/main libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:212 http://mirror-ubc.debian.org/debian/ stretch/main libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:213 http://mirror-ubc.debian.org/debian/ stretch/main libhwloc5 amd64 1.11.5-1 [105 kB] Get:214 http://mirror-ubc.debian.org/debian/ stretch/main libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:215 http://mirror-ubc.debian.org/debian/ stretch/main ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:216 http://mirror-ubc.debian.org/debian/ stretch/main libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:217 http://mirror-ubc.debian.org/debian/ stretch/main libopenmpi2 amd64 2.0.2-2 [2008 kB] Get:218 http://mirror-ubc.debian.org/debian/ stretch/main hyphy-mpi amd64 2.2.7+dfsg-1+b2 [920 kB] Get:219 http://mirror-ubc.debian.org/debian/ stretch/main libmodule-load-conditional-perl all 0.68-1 [17.3 kB] Get:220 http://mirror-ubc.debian.org/debian/ stretch/main libarchive-extract-perl all 0.80-1 [24.9 kB] Get:221 http://mirror-ubc.debian.org/debian/ stretch/main libtry-tiny-perl all 0.28-1 [22.7 kB] Get:222 http://mirror-ubc.debian.org/debian/ stretch/main libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:223 http://mirror-ubc.debian.org/debian/ stretch/main libvariable-magic-perl amd64 0.61-1 [45.1 kB] Get:224 http://mirror-ubc.debian.org/debian/ stretch/main libb-hooks-endofscope-perl all 0.21-1 [16.3 kB] Get:225 http://mirror-ubc.debian.org/debian/ stretch/main libcpan-changes-perl all 0.400002-1 [34.7 kB] Get:226 http://mirror-ubc.debian.org/debian/ stretch/main libcupsfilters1 amd64 1.11.6-3 [129 kB] Get:227 http://mirror-ubc.debian.org/debian/ stretch/main libdata-perl-perl all 0.002009-1 [50.5 kB] Get:228 http://mirror-ubc.debian.org/debian/ stretch/main libdrm2 amd64 2.4.74-1 [36.2 kB] Get:229 http://mirror-ubc.debian.org/debian/ stretch/main libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:230 http://mirror-ubc.debian.org/debian/ stretch/main libfile-slurp-perl all 9999.19-6 [43.2 kB] Get:231 http://mirror-ubc.debian.org/debian/ stretch/main libparams-validate-perl amd64 1.26-1 [66.0 kB] Get:232 http://mirror-ubc.debian.org/debian/ stretch/main libgetopt-long-descriptive-perl all 0.100-1 [26.9 kB] Get:233 http://mirror-ubc.debian.org/debian/ stretch/main libgts-bin amd64 0.7.6+darcs121130-4 [50.8 kB] Get:234 http://mirror-ubc.debian.org/debian/ stretch/main libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:235 http://mirror-ubc.debian.org/debian/ stretch/main beignet-opencl-icd amd64 1.3.0-4 [12.8 MB] Get:236 http://mirror-ubc.debian.org/debian/ stretch/main libhmsbeagle1v5 amd64 2.1.2+20160831-5 [116 kB] Get:237 http://mirror-ubc.debian.org/debian/ stretch/main libhts1 amd64 1.3.2-2 [257 kB] Get:238 http://mirror-ubc.debian.org/debian/ stretch/main libmath-random-isaac-xs-perl amd64 1.004-2+b2 [17.5 kB] Get:239 http://mirror-ubc.debian.org/debian/ stretch/main libmoox-handlesvia-perl all 0.001008-2 [22.1 kB] Get:240 http://mirror-ubc.debian.org/debian/ stretch/main libpackage-stash-perl all 0.37-1 [20.8 kB] Get:241 http://mirror-ubc.debian.org/debian/ stretch/main libsub-identify-perl amd64 0.12-2+b1 [11.5 kB] Get:242 http://mirror-ubc.debian.org/debian/ stretch/main libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:243 http://mirror-ubc.debian.org/debian/ stretch/main libnamespace-autoclean-perl all 0.28-1 [14.7 kB] Get:244 http://mirror-ubc.debian.org/debian/ stretch/main libpackage-stash-xs-perl amd64 0.28-3+b1 [17.9 kB] Get:245 http://mirror-ubc.debian.org/debian/ stretch/main libpath-tiny-perl all 0.100-1 [66.0 kB] Get:246 http://mirror-ubc.debian.org/debian/ stretch/main libpod-markdown-perl all 3.005000-1 [32.7 kB] Get:247 http://mirror-ubc.debian.org/debian/ stretch/main libpod-readme-perl all 1.1.2-1 [45.0 kB] Get:248 http://mirror-ubc.debian.org/debian/ stretch/main libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3 [102 kB] Get:249 http://mirror-ubc.debian.org/debian/ stretch/main libunicode-utf8-perl amd64 0.60-1+b3 [22.3 kB] Get:250 http://mirror-ubc.debian.org/debian/ stretch/main libxtables12 amd64 1.6.0+snapshot20161117-6 [75.9 kB] Get:251 http://mirror-ubc.debian.org/debian/ stretch/main lynx-cur all 2.8.9dev11-1 [240 kB] Get:252 http://mirror-ubc.debian.org/debian/ stretch/main lynx amd64 2.8.9dev11-1 [632 kB] Get:253 http://mirror-ubc.debian.org/debian/ stretch/main lynx-common all 2.8.9dev11-1 [1098 kB] Get:254 http://mirror-ubc.debian.org/debian/ stretch/main maq amd64 0.7.1-7 [311 kB] Get:255 http://mirror-ubc.debian.org/debian/ stretch/main mustang amd64 3.2.3-1 [113 kB] Get:256 http://mirror-ubc.debian.org/debian/ stretch/main openssl amd64 1.1.0f-3+deb9u2 [725 kB] Get:257 http://mirror-ubc.debian.org/debian/ stretch/main phylip amd64 1:3.696+dfsg-5 [942 kB] Get:258 http://mirror-ubc.debian.org/debian/ stretch/main openmpi-common all 2.0.2-2 [149 kB] Get:259 http://mirror-ubc.debian.org/debian/ stretch/main openmpi-bin amd64 2.0.2-2 [186 kB] Get:260 http://mirror-ubc.debian.org/debian/ stretch/main phyml amd64 3:3.2.0+dfsg-7+b1 [1298 kB] Get:261 http://mirror-ubc.debian.org/debian/ stretch/main prank amd64 0.0.150803-2 [374 kB] Get:262 http://mirror-ubc.debian.org/debian/ stretch/main primer3 amd64 2.3.7-3 [173 kB] Get:263 http://mirror-ubc.debian.org/debian/ stretch/main probalign amd64 1.4-5 [65.4 kB] Get:264 http://mirror-ubc.debian.org/debian/ stretch/main probcons amd64 1.12-11 [107 kB] Get:265 http://mirror-ubc.debian.org/debian/ stretch/main ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:266 http://mirror-ubc.debian.org/debian/ stretch/main ruby-minitest all 5.9.0-1 [51.1 kB] Get:267 http://mirror-ubc.debian.org/debian/ stretch/main ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:268 http://mirror-ubc.debian.org/debian/ stretch/main ruby-power-assert all 0.3.0-1 [7902 B] Get:269 http://mirror-ubc.debian.org/debian/ stretch/main ruby-test-unit all 3.1.7-2 [69.6 kB] Get:270 http://mirror-ubc.debian.org/debian/ stretch/main libruby2.3 amd64 2.3.3-1+deb9u2 [3108 kB] Get:271 http://mirror-ubc.debian.org/debian/ stretch/main ruby2.3 amd64 2.3.3-1+deb9u2 [187 kB] Get:272 http://mirror-ubc.debian.org/debian/ stretch/main ruby amd64 1:2.3.3 [10.8 kB] Get:273 http://mirror-ubc.debian.org/debian/ stretch/main rake all 10.5.0-2 [49.4 kB] Get:274 http://mirror-ubc.debian.org/debian/ stretch/main raxml amd64 8.2.9+dfsg-1+b1 [1278 kB] Get:275 http://mirror-ubc.debian.org/debian/ stretch/main samtools amd64 1.3.1-3 [254 kB] Get:276 http://mirror-ubc.debian.org/debian/ stretch/main t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:277 http://mirror-ubc.debian.org/debian/ stretch/main tigr-glimmer amd64 3.02b-1 [283 kB] Get:278 http://mirror-ubc.debian.org/debian/ stretch/main unzip amd64 6.0-21 [170 kB] Get:279 http://mirror-ubc.debian.org/debian/ stretch/main wise amd64 2.4.1-19 [993 kB] Get:280 http://mirror-ubc.debian.org/debian/ stretch/main wise-data all 2.4.1-19 [108 kB] Get:281 http://mirror-ubc.debian.org/debian/ stretch/main zip amd64 3.0-11+b1 [234 kB] Get:282 http://mirror-ubc.debian.org/debian/ stretch/main bowtie amd64 1.1.2-6 [1618 kB] Get:283 http://mirror-ubc.debian.org/debian/ stretch/main gnupg-l10n all 2.1.18-8~deb9u3 [893 kB] Get:284 http://mirror-ubc.debian.org/debian/ stretch/main med-config all 3.0.1 [17.1 kB] Get:285 http://mirror-ubc.debian.org/debian/ stretch/main publicsuffix all 20181003.1334-0+deb9u1 [104 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 210 MB in 10s (19.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29385 files and directories currently installed.) Preparing to unpack .../libc6_2.24-11+deb9u3_amd64.deb ... Unpacking libc6:amd64 (2.24-11+deb9u3) over (2.19-18+deb8u10) ... Setting up libc6:amd64 (2.24-11+deb9u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29386 files and directories currently installed.) Preparing to unpack .../libc-bin_2.24-11+deb9u3_amd64.deb ... Unpacking libc-bin (2.24-11+deb9u3) over (2.19-18+deb8u10) ... Setting up libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package gcc-6-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29384 files and directories currently installed.) Preparing to unpack .../gcc-6-base_6.3.0-18+deb9u1_amd64.deb ... Unpacking gcc-6-base:amd64 (6.3.0-18+deb9u1) ... Setting up gcc-6-base:amd64 (6.3.0-18+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29391 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6.3.0-18+deb9u1_amd64.deb ... Unpacking libgcc1:amd64 (1:6.3.0-18+deb9u1) over (1:4.9.2-10+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libgcc1:amd64 (1:6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package libfdisk1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29391 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29397 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.9_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59.9) over (2.88dsf-59) ... Replacing files in old package initscripts (2.88dsf-59) ... Selecting previously unselected package init-system-helpers. Preparing to unpack .../init-system-helpers_1.48_all.deb ... Unpacking init-system-helpers (1.48) ... Replacing files in old package sysv-rc (2.88dsf-59) ... Setting up init-system-helpers (1.48) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29401 files and directories currently installed.) Preparing to unpack .../util-linux_2.29.2-1+deb9u1_amd64.deb ... Unpacking util-linux (2.29.2-1+deb9u1) over (2.25.2-6) ... Replacing files in old package initscripts (2.88dsf-59) ... Processing triggers for mime-support (3.58) ... Setting up util-linux (2.29.2-1+deb9u1) ... Installing new version of config file /etc/init.d/hwclock.sh ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29432 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.9_amd64.deb ... Unpacking initscripts (2.88dsf-59.9) over (2.88dsf-59) ... Setting up sysvinit-utils (2.88dsf-59.9) ... Setting up initscripts (2.88dsf-59.9) ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/umountfs ... Installing new version of config file /etc/init.d/umountroot ... Installing new version of config file /etc/default/rcS ... Installing new version of config file /etc/default/tmpfs ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29432 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.9_all.deb ... Unpacking sysv-rc (2.88dsf-59.9) over (2.88dsf-59) ... Setting up sysv-rc (2.88dsf-59.9) ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29430 files and directories currently installed.) Preparing to unpack .../perl-doc_5.24.1-3+deb9u4_all.deb ... Leaving 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.24.1-3+deb9u4) over (5.20.2-3+deb8u11) ... Preparing to unpack .../libclass-xsaccessor-perl_1.19-2+b7_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-2+b7) over (1.19-2+b4) ... Selecting previously unselected package liblua5.2-0:amd64. Preparing to unpack .../liblua5.2-0_5.2.4-1.1+b2_amd64.deb ... Unpacking liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../libnghttp2-14_1.18.1-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.18.1-1) ... Selecting previously unselected package libssl1.0.2:amd64. Preparing to unpack .../libssl1.0.2_1.0.2l-2+deb9u3_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2l-2+deb9u3) ... Preparing to unpack .../apache2-utils_2.4.25-3+deb9u6_amd64.deb ... Unpacking apache2-utils (2.4.25-3+deb9u6) over (2.4.10-10+deb8u12) ... Preparing to unpack .../apache2-data_2.4.25-3+deb9u6_all.deb ... Unpacking apache2-data (2.4.25-3+deb9u6) over (2.4.10-10+deb8u12) ... Preparing to unpack .../apache2_2.4.25-3+deb9u6_amd64.deb ... Restoring lost conffile /etc/apache2/mods-available/cern_meta.load. Restoring lost conffile /etc/apache2/mods-available/imagemap.load. Unpacking apache2 (2.4.25-3+deb9u6) over (2.4.10-10+deb8u12) ... Preparing to unpack .../apache2-bin_2.4.25-3+deb9u6_amd64.deb ... Unpacking apache2-bin (2.4.25-3+deb9u6) over (2.4.10-10+deb8u12) ... Preparing to unpack .../libcpan-meta-perl_2.150010-1_all.deb ... Unpacking libcpan-meta-perl (2.150010-1) over (2.142690-1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Processing triggers for systemd (215-17+deb8u7) ... dpkg: perl-modules: dependency problems, but removing anyway as you requested: perl depends on perl-modules (>= 5.20.2-3+deb8u11). libmodule-build-perl depends on perl (>= 5.21.3) | libcpan-meta-perl (>= 2.142060); however: Version of perl on system is 5.20.2-3+deb8u11. Package libcpan-meta-perl is not configured yet. Package perl-modules which provides libcpan-meta-perl is to be removed. libcpan-meta-perl depends on perl (>= 5.21.5) | libjson-pp-perl (>= 2.27300); however: Version of perl on system is 5.20.2-3+deb8u11. Package libjson-pp-perl is not installed. Package perl-modules which provides libjson-pp-perl is to be removed. libcpan-meta-perl depends on perl (>= 5.21.5) | libjson-pp-perl (>= 2.27300); however: Version of perl on system is 5.20.2-3+deb8u11. Package libjson-pp-perl is not installed. Package perl-modules which provides libjson-pp-perl is to be removed. libcpan-meta-perl depends on perl (>= 5.21.5) | libjson-pp-perl (>= 2.27300); however: Version of perl on system is 5.20.2-3+deb8u11. Package libjson-pp-perl is not installed. Package perl-modules which provides libjson-pp-perl is to be removed. libmailtools-perl depends on libnet-perl; however: Package libnet-perl is not installed. Package perl-modules which provides libnet-perl is to be removed. libmodule-build-perl depends on perl (>= 5.21.3) | libcpan-meta-perl (>= 2.142060); however: Version of perl on system is 5.20.2-3+deb8u11. Package libcpan-meta-perl is not configured yet. Package perl-modules which provides libcpan-meta-perl is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29500 files and directories currently installed.) Removing perl-modules (5.20.2-3+deb8u11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28775 files and directories currently installed.) Preparing to unpack .../perl_5.24.1-3+deb9u4_amd64.deb ... Unpacking perl (5.24.1-3+deb9u4) over (5.20.2-3+deb8u11) ... Selecting previously unselected package perl-modules-5.24. Preparing to unpack .../perl-modules-5.24_5.24.1-3+deb9u4_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u4) ... Selecting previously unselected package libperl5.24:amd64. Preparing to unpack .../libperl5.24_5.24.1-3+deb9u4_amd64.deb ... Unpacking libperl5.24:amd64 (5.24.1-3+deb9u4) ... Preparing to unpack .../libapache2-mod-perl2_2.0.10-2_amd64.deb ... Unpacking libapache2-mod-perl2 (2.0.10-2) over (2.0.9~1624218-2+deb8u2) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30107 files and directories currently installed.) Removing libperl5.20 (5.20.2-3+deb8u11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30105 files and directories currently installed.) Preparing to unpack .../libfcgi-perl_0.78-2_amd64.deb ... Unpacking libfcgi-perl (0.78-2) over (0.77-1+deb8u1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../libnettle6_3.3-1+b2_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+b2) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../libhogweed4_3.3-1+b2_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+b2) ... Selecting previously unselected package libgnutls30:amd64. Preparing to unpack .../libgnutls30_3.5.8-5+deb9u4_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u4) ... Preparing to unpack .../ncbi-blast+_2.6.0-1_amd64.deb ... Unpacking ncbi-blast+ (2.6.0-1) over (2.2.29-3) ... Preparing to unpack .../libstdc++6_6.3.0-18+deb9u1_amd64.deb ... Unpacking libstdc++6:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libstdc++6:amd64 (6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package libmariadbclient18:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30150 files and directories currently installed.) Preparing to unpack .../libmariadbclient18_10.1.26-0+deb9u1_amd64.deb ... Unpacking libmariadbclient18:amd64 (10.1.26-0+deb9u1) ... Preparing to unpack .../libdbd-mysql-perl_4.041-2_amd64.deb ... Unpacking libdbd-mysql-perl (4.041-2) over (4.028-2+deb8u2) ... Preparing to unpack .../libxml-libxml-perl_2.0128+dfsg-1+deb9u1_amd64.deb ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Unpacking libxml-libxml-perl (2.0128+dfsg-1+deb9u1) over (2.0116+dfsg-1+deb8u2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../libssl1.1_1.1.0f-3+deb9u2_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0f-3+deb9u2) ... Selecting previously unselected package libcrypt-random-seed-perl. Preparing to unpack .../libcrypt-random-seed-perl_0.03-1_all.deb ... Unpacking libcrypt-random-seed-perl (0.03-1) ... Selecting previously unselected package libmath-random-isaac-perl. Preparing to unpack .../libmath-random-isaac-perl_1.003-1_all.deb ... Unpacking libmath-random-isaac-perl (1.003-1) ... Selecting previously unselected package libbytes-random-secure-perl. Preparing to unpack .../libbytes-random-secure-perl_0.28-1_all.deb ... Unpacking libbytes-random-secure-perl (0.28-1) ... Preparing to unpack .../libcrypt-ssleay-perl_0.73.04-2_amd64.deb ... Unpacking libcrypt-ssleay-perl (0.73.04-2) over (0.58-1+b2) ... Preparing to unpack .../libnet-ssleay-perl_1.80-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.80-1) over (1.65-1+deb8u1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Preparing to unpack .../libyaml-libyaml-perl_0.63-2_amd64.deb ... Unpacking libyaml-libyaml-perl (0.63-2) over (0.41-6) ... Preparing to unpack .../libsub-name-perl_0.21-1_amd64.deb ... Unpacking libsub-name-perl (0.21-1) over (0.12-1) ... Preparing to unpack .../libindirect-perl_0.37-1+b1_amd64.deb ... Unpacking libindirect-perl (0.37-1+b1) over (0.33-1) ... Preparing to unpack .../libhtml-parser-perl_3.72-3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3) over (3.71-1+b3) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../libpng16-16_1.6.28-1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.28-1) ... Preparing to unpack .../perl-tk_1%3a804.033-1+b3_amd64.deb ... Unpacking perl-tk (1:804.033-1+b3) over (1:804.032-3+b3) ... Preparing to unpack .../libdbd-pg-perl_3.5.3-1+b2_amd64.deb ... Unpacking libdbd-pg-perl (3.5.3-1+b2) over (3.4.2-1) ... Preparing to unpack .../libbit-vector-perl_7.4-1+b2_amd64.deb ... Unpacking libbit-vector-perl (7.4-1+b2) over (7.3-1+b2) ... Preparing to unpack .../libdate-calc-perl_6.4-1_all.deb ... Unpacking libdate-calc-perl (6.4-1) over (6.3-2) ... Preparing to unpack .../libdate-calc-xs-perl_6.4-1+b2_amd64.deb ... Unpacking libdate-calc-xs-perl (6.4-1+b2) over (6.3-2) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Preparing to unpack .../sqlite3_3.16.2-5+deb9u1_amd64.deb ... Unpacking sqlite3 (3.16.2-5+deb9u1) over (3.8.7.1-1+deb8u2) ... Preparing to unpack .../libsqlite3-0_3.16.2-5+deb9u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u1) over (3.8.7.1-1+deb8u2) ... Preparing to unpack .../libdbd-sqlite3-perl_1.54-1_amd64.deb ... Unpacking libdbd-sqlite3-perl (1.54-1) over (1.44-1) ... Preparing to unpack .../libguard-perl_1.023-1+b2_amd64.deb ... Unpacking libguard-perl (1.023-1+b2) over (1.022-2+b1) ... Preparing to unpack .../libdbi-perl_1.636-1+b1_amd64.deb ... Unpacking libdbi-perl (1.636-1+b1) over (1.631-3+b1) ... Selecting previously unselected package libstaden-read11:amd64. Preparing to unpack .../libstaden-read11_1.14.8-2_amd64.deb ... Unpacking libstaden-read11:amd64 (1.14.8-2) ... Preparing to unpack .../libbio-scf-perl_1.03-3_amd64.deb ... Unpacking libbio-scf-perl (1.03-3) over (1.03-2+b1) ... Preparing to unpack .../libparams-classify-perl_0.013-6+b1_amd64.deb ... Unpacking libparams-classify-perl (0.013-6+b1) over (0.013-4+b2) ... Preparing to unpack .../libparams-util-perl_1.07-3+b1_amd64.deb ... Unpacking libparams-util-perl (1.07-3+b1) over (1.07-2+b1) ... Preparing to unpack .../libpadwalker-perl_2.2-2+b1_amd64.deb ... Unpacking libpadwalker-perl (2.2-2+b1) over (1.98-1+b1) ... Preparing to unpack .../libstring-approx-perl_3.27-1+b4_amd64.deb ... Unpacking libstring-approx-perl (3.27-1+b4) over (3.27-1+b2) ... Preparing to unpack .../libconvert-binary-c-perl_0.78-1+b1_amd64.deb ... Unpacking libconvert-binary-c-perl (0.78-1+b1) over (0.76-3+b2) ... Preparing to unpack .../libmultidimensional-perl_0.012-1+b1_amd64.deb ... Unpacking libmultidimensional-perl (0.012-1+b1) over (0.010-1+b2) ... Preparing to unpack .../libtext-charwidth-perl_0.04-7+b5_amd64.deb ... Unpacking libtext-charwidth-perl (0.04-7+b5) over (0.04-7+b3) ... Preparing to unpack .../libbareword-filehandles-perl_0.004-1+b1_amd64.deb ... Unpacking libbareword-filehandles-perl (0.004-1+b1) over (0.003-1+b2) ... Preparing to unpack .../liblexical-sealrequirehints-perl_0.010-1+b1_amd64.deb ... Unpacking liblexical-sealrequirehints-perl (0.010-1+b1) over (0.007-1+b2) ... Preparing to unpack .../libclone-perl_0.38-2+b1_amd64.deb ... Unpacking libclone-perl (0.38-2+b1) over (0.37-1+b1) ... Preparing to unpack .../perl-base_5.24.1-3+deb9u4_amd64.deb ... Unpacking perl-base (5.24.1-3+deb9u4) over (5.20.2-3+deb8u11) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up perl-base (5.24.1-3+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30300 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-3+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b1) over (1.05-8+b1) ... Preparing to unpack .../libxml-parser-perl_2.44-2+b1_amd64.deb ... Unpacking libxml-parser-perl (2.44-2+b1) over (2.41-3) ... Preparing to unpack .../libace-perl_1.92-4+b1_amd64.deb ... Unpacking libace-perl (1.92-4+b1) over (1.92-3+b1) ... Preparing to unpack .../libtext-iconv-perl_1.7-5+b4_amd64.deb ... Unpacking libtext-iconv-perl (1.7-5+b4) over (1.7-5+b2) ... Preparing to unpack .../libxml-libxslt-perl_1.95-1+b1_amd64.deb ... Unpacking libxml-libxslt-perl (1.95-1+b1) over (1.92-1+b1) ... Preparing to unpack .../libbsd-resource-perl_1.2910-1+b1_amd64.deb ... Unpacking libbsd-resource-perl (1.2910-1+b1) over (1.2907-1+b2) ... Preparing to unpack .../libalgorithm-diff-xs-perl_0.04-4+b2_amd64.deb ... Unpacking libalgorithm-diff-xs-perl (0.04-4+b2) over (0.04-3+b1) ... Preparing to unpack .../libterm-readkey-perl_2.37-1_amd64.deb ... Unpacking libterm-readkey-perl (2.37-1) over (2.32-1+b1) ... Preparing to unpack .../libgd-perl_2.53-3_amd64.deb ... Unpacking libgd-perl (2.53-3) over (2.53-1+b1) ... Preparing to unpack .../libdevel-caller-perl_2.06-1+b4_amd64.deb ... Unpacking libdevel-caller-perl (2.06-1+b4) over (2.06-1+b2) ... Preparing to unpack .../libunicode-map-perl_0.112-11+b3_amd64.deb ... Unpacking libunicode-map-perl (0.112-11+b3) over (0.112-11+b1) ... Preparing to unpack .../libtype-tiny-xs-perl_0.012-1+b2_amd64.deb ... Unpacking libtype-tiny-xs-perl (0.012-1+b2) over (0.010-1) ... Preparing to unpack .../libtext-soundex-perl_3.4-1+b4_amd64.deb ... Unpacking libtext-soundex-perl (3.4-1+b4) over (3.4-1+b2) ... Selecting previously unselected package libtypes-serialiser-perl. Preparing to unpack .../libtypes-serialiser-perl_1.0-1_all.deb ... Unpacking libtypes-serialiser-perl (1.0-1) ... Preparing to unpack .../libjson-xs-perl_3.030-1_amd64.deb ... Unpacking libjson-xs-perl (3.030-1) over (2.340-1+b2) ... Preparing to unpack .../libev-perl_4.22-1+b1_amd64.deb ... Unpacking libev-perl (4.22-1+b1) over (4.18-1) ... Preparing to unpack .../libossp-uuid-perl_1.6.2-1.5+b4_amd64.deb ... Unpacking libossp-uuid-perl (1.6.2-1.5+b4) over (1.6.2-1.5+b1) ... Preparing to unpack .../libb-hooks-op-check-perl_0.19-3+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.19-3+b1) over (0.19-2+b1) ... Preparing to unpack .../libasync-interrupt-perl_1.21-1+b2_amd64.deb ... Unpacking libasync-interrupt-perl (1.21-1+b2) over (1.20-1+b1) ... Preparing to unpack .../libio-pty-perl_1%3a1.08-1.1+b2_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b2) over (1:1.08-1+b4) ... Preparing to unpack .../libanyevent-perl_7.130-2_amd64.deb ... Unpacking libanyevent-perl (7.130-2) over (7.070-3) ... Preparing to unpack .../gbrowse-calign_2.56+dfsg-2_amd64.deb ... Unpacking gbrowse-calign (2.56+dfsg-2) over (2.54+dfsg-3+b1) ... Preparing to unpack .../libipc-sharelite-perl_0.17-4_amd64.deb ... Unpacking libipc-sharelite-perl (0.17-4) over (0.17-3+b2) ... Preparing to unpack .../libclass-c3-xs-perl_0.14-1+b1_amd64.deb ... Unpacking libclass-c3-xs-perl (0.14-1+b1) over (0.13-2+b1) ... Preparing to unpack .../libdevel-lexalias-perl_0.05-1+b4_amd64.deb ... Unpacking libdevel-lexalias-perl (0.05-1+b4) over (0.05-1+b2) ... Preparing to unpack .../liblist-moreutils-perl_0.416-1+b1_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b1) over (0.33-2+b1) ... Preparing to unpack .../libcommon-sense-perl_3.74-2_amd64.deb ... Unpacking libcommon-sense-perl (3.74-2) over (3.73-2+b3) ... Preparing to unpack .../blast2_1%3a2.6.0-1_all.deb ... Unpacking blast2 (1:2.6.0-1) over (1:2.2.26.20120620-8) ... Selecting previously unselected package ncbi-blast+-legacy. Preparing to unpack .../ncbi-blast+-legacy_2.6.0-1_all.deb ... Unpacking ncbi-blast+-legacy (2.6.0-1) ... Preparing to unpack .../libncbi6_6.1.20170106-2_amd64.deb ... Unpacking libncbi6:amd64 (6.1.20170106-2) over (6.1.20120620-8) ... Preparing to unpack .../ncbi-data_6.1.20170106-2_all.deb ... Unpacking ncbi-data (6.1.20170106-2) over (6.1.20120620-8) ... Preparing to unpack .../mime-support_3.60_all.deb ... Unpacking mime-support (3.60) over (3.58) ... Preparing to unpack .../python2.7_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7 (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../libpython2.7-stdlib_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../python2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../libpython2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../python-minimal_2.7.13-2_amd64.deb ... Unpacking python-minimal (2.7.13-2) over (2.7.9-1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Setting up python2.7-minimal (2.7.13-2+deb9u3) ... Setting up python-minimal (2.7.13-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30277 files and directories currently installed.) Preparing to unpack .../python_2.7.13-2_amd64.deb ... Unpacking python (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../libpython-stdlib_2.7.13-2_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../libgomp1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgomp1:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../libldap-common_2.4.44+dfsg-5+deb9u2_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5+deb9u2) ... Replacing files in old package libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Preparing to unpack .../libsasl2-2_2.1.27~101-g0780600+dfsg-3_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3) over (2.1.26.dfsg1-13+deb8u1) ... Preparing to unpack .../libldap-2.4-2_2.4.44+dfsg-5+deb9u2_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u2) over (2.4.40+dfsg-1+deb8u4) ... Preparing to unpack .../libaprutil1-ldap_1.5.4-3_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.5.4-3) over (1.5.4-1) ... Preparing to unpack .../libaprutil1-dbd-sqlite3_1.5.4-3_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) over (1.5.4-1) ... Preparing to unpack .../libaprutil1_1.5.4-3_amd64.deb ... Unpacking libaprutil1:amd64 (1.5.4-3) over (1.5.4-1) ... Selecting previously unselected package liblz4-1:amd64. Preparing to unpack .../liblz4-1_0.0~r131-2+b1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30289 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.11.0-3+deb9u2_amd64.deb ... Unpacking libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package libip4tc0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30295 files and directories currently installed.) Preparing to unpack .../libip4tc0_1.6.0+snapshot20161117-6_amd64.deb ... Unpacking libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30301 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2.1+deb9u1_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package libelf1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30307 files and directories currently installed.) Preparing to unpack .../libelf1_0.168-1_amd64.deb ... Unpacking libelf1:amd64 (0.168-1) ... Selecting previously unselected package libmnl0:amd64. Preparing to unpack .../libmnl0_1.0.4-2_amd64.deb ... Unpacking libmnl0:amd64 (1.0.4-2) ... Preparing to unpack .../iproute2_4.9.0-1+deb9u1_amd64.deb ... Unpacking iproute2 (4.9.0-1+deb9u1) over (3.16.0-2) ... Preparing to unpack .../libsystemd0_232-25+deb9u6_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u6) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libsystemd0:amd64 (232-25+deb9u6) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30372 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u6_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u6) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libudev1:amd64 (232-25+deb9u6) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... dpkg: considering deconfiguration of ifupdown, which would be broken by installation of udev ... dpkg: yes, will deconfigure ifupdown (broken by udev) dpkg: considering deconfiguration of systemd, which would be broken by installation of udev ... dpkg: yes, will deconfigure systemd (broken by udev) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30371 files and directories currently installed.) Preparing to unpack .../udev_232-25+deb9u6_amd64.deb ... De-configuring systemd (215-17+deb8u7) ... De-configuring ifupdown (0.7.53.1) ... Unpacking udev (232-25+deb9u6) over (215-17+deb8u7) ... Replacing files in old package systemd (215-17+deb8u7) ... dpkg: warning: unable to delete old directory '/etc/modprobe.d': Directory not empty Preparing to unpack .../ifupdown_0.8.19_amd64.deb ... Unpacking ifupdown (0.8.19) over (0.7.53.1) ... Replacing files in old package systemd (215-17+deb8u7) ... Preparing to unpack .../systemd_232-25+deb9u6_amd64.deb ... Unpacking systemd (232-25+deb9u6) over (215-17+deb8u7) ... Processing triggers for dbus (1.8.22-0+deb8u1) ... Setting up systemd (232-25+deb9u6) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/timesyncd.conf ... Installing new version of config file /etc/systemd/user.conf ... Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service. addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.machine1.conf ... Removing obsolete conffile /etc/systemd/bootchart.conf ... Processing triggers for dbus (1.8.22-0+deb8u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30432 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.137-2_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Preparing to unpack .../dmsetup_2%3a1.02.137-2_amd64.deb ... Unpacking dmsetup (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.137-2) ... Setting up dmsetup (2:1.02.137-2) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30436 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.3-4_amd64.deb ... Unpacking libcryptsetup4:amd64 (2:1.7.3-4) over (2:1.6.6-5) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libcryptsetup4:amd64 (2:1.7.3-4) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package libprocps6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30436 files and directories currently installed.) Preparing to unpack .../libprocps6_2%3a3.3.12-3+deb9u1_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30443 files and directories currently installed.) Preparing to unpack .../procps_2%3a3.3.12-3+deb9u1_amd64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-3+deb9u1) over (2:3.3.9-9+deb8u1) ... Setting up procps (2:3.3.12-3+deb9u1) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Processing triggers for systemd (232-25+deb9u6) ... Selecting previously unselected package libicu57:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30445 files and directories currently installed.) Preparing to unpack .../libicu57_57.1-6+deb9u2_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u2) ... Preparing to unpack .../libxml2_2.9.4+dfsg1-2.2+deb9u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) over (2.9.1+dfsg1-5+deb8u6) ... Preparing to unpack .../libpq5_9.6.10-0+deb9u1_amd64.deb ... Unpacking libpq5:amd64 (9.6.10-0+deb9u1) over (9.4.18-0+deb8u1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.6+really0.9.3-0.1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../libidn2-0_0.16-1+deb9u1_amd64.deb ... Unpacking libidn2-0:amd64 (0.16-1+deb9u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../libpsl5_0.17.0-3_amd64.deb ... Unpacking libpsl5:amd64 (0.17.0-3) ... Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-1+b1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) over (2.4+20150115.gita107cef-1+deb8u1) ... Preparing to unpack .../libcurl3-gnutls_7.52.1-5+deb9u8_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.52.1-5+deb9u8) over (7.38.0-4+deb8u11) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../libwebp6_0.5.2-1_amd64.deb ... Unpacking libwebp6:amd64 (0.5.2-1) ... Preparing to unpack .../libfreetype6_2.6.3-3.2_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2) over (2.5.2-3+deb8u2) ... Preparing to unpack .../libgd3_2.2.4-2+deb9u3_amd64.deb ... Unpacking libgd3:amd64 (2.2.4-2+deb9u3) over (2.1.0-5+deb8u11) ... Preparing to unpack .../libossp-uuid16_1.6.2-1.5+b4_amd64.deb ... Unpacking libossp-uuid16:amd64 (1.6.2-1.5+b4) over (1.6.2-1.5+b1) ... Selecting previously unselected package libbio-coordinate-perl. Preparing to unpack .../libbio-coordinate-perl_1.7.1-1_all.deb ... Unpacking libbio-coordinate-perl (1.7.1-1) ... Preparing to unpack .../gbrowse_2.56+dfsg-2_all.deb ... Unpacking gbrowse (2.56+dfsg-2) over (2.54+dfsg-3) ... Preparing to unpack .../archives/init_1.48_amd64.deb ... Unpacking init (1.48) over (1.22) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Processing triggers for systemd (232-25+deb9u6) ... Setting up init (1.48) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30554 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.8_amd64.deb ... Unpacking apt (1.4.8) over (1.0.9.8.4) ... Selecting previously unselected package libapt-pkg5.0:amd64. Preparing to unpack .../libapt-pkg5.0_1.4.8_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.8) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libapt-pkg5.0:amd64 (1.4.8) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30609 files and directories currently installed.) Removing fonts-droid (1:4.4.4r2-6) ... Selecting previously unselected package fonts-droid-fallback. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30575 files and directories currently installed.) Preparing to unpack .../fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../fonts-lato_2.0-1_all.deb ... Unpacking fonts-lato (2.0-1) ... Selecting previously unselected package libmpfr4:amd64. Preparing to unpack .../libmpfr4_3.1.5-1_amd64.deb ... Unpacking libmpfr4:amd64 (3.1.5-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-5_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-5) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libmpfr4:amd64 (3.1.5-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libsigsegv2:amd64 (2.10-5) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30632 files and directories currently installed.) Preparing to unpack .../gawk_1%3a4.1.4+dfsg-1_amd64.deb ... Unpacking gawk (1:4.1.4+dfsg-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../libassuan0_2.4.3-2_amd64.deb ... Unpacking libassuan0:amd64 (2.4.3-2) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../pinentry-curses_1.0.0-2_amd64.deb ... Unpacking pinentry-curses (1.0.0-2) ... Selecting previously unselected package libnpth0:amd64. Preparing to unpack .../libnpth0_1.3-1_amd64.deb ... Unpacking libnpth0:amd64 (1.3-1) ... Selecting previously unselected package gnupg-agent. Preparing to unpack .../gnupg-agent_2.1.18-8~deb9u3_amd64.deb ... Unpacking gnupg-agent (2.1.18-8~deb9u3) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../libksba8_1.3.5-2_amd64.deb ... Unpacking libksba8:amd64 (1.3.5-2) ... Preparing to unpack .../gnupg_2.1.18-8~deb9u3_amd64.deb ... Unpacking gnupg (2.1.18-8~deb9u3) over (1.4.18-7+deb8u5) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libnpth0:amd64 (1.3-1) ... Setting up gnupg-agent (2.1.18-8~deb9u3) ... Setting up libksba8:amd64 (1.3.5-2) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up gnupg (2.1.18-8~deb9u3) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Selecting previously unselected package libisc-export160. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30836 files and directories currently installed.) Preparing to unpack .../libisc-export160_1%3a9.10.3.dfsg.P4-12.3+deb9u4_amd64.deb ... Unpacking libisc-export160 (1:9.10.3.dfsg.P4-12.3+deb9u4) ... Selecting previously unselected package libdns-export162. Preparing to unpack .../libdns-export162_1%3a9.10.3.dfsg.P4-12.3+deb9u4_amd64.deb ... Unpacking libdns-export162 (1:9.10.3.dfsg.P4-12.3+deb9u4) ... Preparing to unpack .../isc-dhcp-client_4.3.5-3+deb9u1_amd64.deb ... Unpacking isc-dhcp-client (4.3.5-3+deb9u1) over (4.3.1-6+deb8u3) ... Preparing to unpack .../isc-dhcp-common_4.3.5-3+deb9u1_amd64.deb ... Unpacking isc-dhcp-common (4.3.5-3+deb9u1) over (4.3.1-6+deb8u3) ... Selecting previously unselected package bzip2. Preparing to unpack .../bzip2_1.0.6-8.1_amd64.deb ... Unpacking bzip2 (1.0.6-8.1) ... Preparing to unpack .../dbus_1.10.26-0+deb9u1_amd64.deb ... Unpacking dbus (1.10.26-0+deb9u1) over (1.8.22-0+deb8u1) ... Preparing to unpack .../libdbus-1-3_1.10.26-0+deb9u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.10.26-0+deb9u1) over (1.8.22-0+deb8u1) ... Preparing to unpack .../file_1%3a5.30-1+deb9u2_amd64.deb ... Unpacking file (1:5.30-1+deb9u2) over (1:5.22+15-2+deb8u4) ... Preparing to unpack .../libmagic1_1%3a5.30-1+deb9u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.30-1+deb9u2) over (1:5.22+15-2+deb8u4) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../libmagic-mgc_1%3a5.30-1+deb9u2_amd64.deb ... Unpacking libmagic-mgc (1:5.30-1+deb9u2) ... Selecting previously unselected package manpages. Preparing to unpack .../manpages_4.10-2_all.deb ... Unpacking manpages (4.10-2) ... Selecting previously unselected package xz-utils. Preparing to unpack .../xz-utils_5.2.2-1.2+b1_amd64.deb ... Unpacking xz-utils (5.2.2-1.2+b1) ... Preparing to unpack .../amap-align_2.2-6_amd64.deb ... Unpacking amap-align (2.2-6) over (2.2-4) ... Preparing to unpack .../bedtools_2.26.0+dfsg-3_amd64.deb ... Unpacking bedtools (2.26.0+dfsg-3) over (2.21.0-1) ... Preparing to unpack .../bioperl-run_1.7.1-3_all.deb ... Unpacking bioperl-run (1.7.1-3) over (1.6.9-2) ... Preparing to unpack .../libbio-perl-run-perl_1.7.1-3_all.deb ... Unpacking libbio-perl-run-perl (1.7.1-3) over (1.6.9-2) ... Selecting previously unselected package menu. Preparing to unpack .../menu_2.1.47+b1_amd64.deb ... Unpacking menu (2.1.47+b1) ... Selecting previously unselected package blends-common. Preparing to unpack .../blends-common_0.6.96_all.deb ... Unpacking blends-common (0.6.96) ... Preparing to unpack .../clustalo_1.2.4-1_amd64.deb ... Unpacking clustalo (1.2.4-1) over (1.2.1-1) ... Preparing to unpack .../clustalw_2.1+lgpl-5_amd64.deb ... Unpacking clustalw (2.1+lgpl-5) over (2.1+lgpl-4) ... Selecting previously unselected package dirmngr. Preparing to unpack .../dirmngr_2.1.18-8~deb9u3_amd64.deb ... Unpacking dirmngr (2.1.18-8~deb9u3) ... Preparing to unpack .../libhpdf-2.2.1_2.2.1-1.1+b1_amd64.deb ... Unpacking libhpdf-2.2.1 (2.2.1-1.1+b1) over (2.2.1-1.1) ... Preparing to unpack .../emboss_6.6.0+dfsg-6_amd64.deb ... Unpacking emboss (6.6.0+dfsg-6) over (6.6.0+dfsg-1) ... Preparing to unpack .../emboss-lib_6.6.0+dfsg-6_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-6) over (6.6.0+dfsg-1) ... Preparing to unpack .../emboss-data_6.6.0+dfsg-6_all.deb ... Unpacking emboss-data (6.6.0+dfsg-6) over (6.6.0+dfsg-1) ... Selecting previously unselected package fonts-noto-mono. Preparing to unpack .../fonts-noto-mono_20161116-1_all.deb ... Unpacking fonts-noto-mono (20161116-1) ... Selecting previously unselected package mummer. Preparing to unpack .../mummer_3.23+dfsg-2_amd64.deb ... Unpacking mummer (3.23+dfsg-2) ... Selecting previously unselected package fsa. Preparing to unpack .../fsa_1.15.9+dfsg-3_amd64.deb ... Unpacking fsa (1.15.9+dfsg-3) ... Preparing to unpack .../libcupsimage2_2.2.1-8+deb9u2_amd64.deb ... Unpacking libcupsimage2:amd64 (2.2.1-8+deb9u2) over (1.7.5-11+deb8u2) ... Preparing to unpack .../libavahi-client3_0.6.32-2_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.32-2) over (0.6.31-5) ... Preparing to unpack .../libcups2_2.2.1-8+deb9u2_amd64.deb ... Unpacking libcups2:amd64 (2.2.1-8+deb9u2) over (1.7.5-11+deb8u2) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../libopenjp2-7_2.1.2-1.1+deb9u2_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.1.2-1.1+deb9u2) ... Preparing to unpack .../ghostscript_9.20~dfsg-3.2+deb9u5_amd64.deb ... Unpacking ghostscript (9.20~dfsg-3.2+deb9u5) over (9.06~dfsg-2+deb8u7) ... Preparing to unpack .../libgs9_9.20~dfsg-3.2+deb9u5_amd64.deb ... Unpacking libgs9:amd64 (9.20~dfsg-3.2+deb9u5) over (9.06~dfsg-2+deb8u7) ... Preparing to unpack .../libgs9-common_9.20~dfsg-3.2+deb9u5_all.deb ... Unpacking libgs9-common (9.20~dfsg-3.2+deb9u5) over (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package libann0. Preparing to unpack .../libann0_1.1.2+doc-6_amd64.deb ... Unpacking libann0 (1.1.2+doc-6) ... Selecting previously unselected package libgts-0.7-5:amd64. Preparing to unpack .../libgts-0.7-5_0.7.6+darcs121130-4_amd64.deb ... Unpacking libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Preparing to unpack .../libcairo2_1.14.8-1_amd64.deb ... Unpacking libcairo2:amd64 (1.14.8-1) over (1.14.0-2.1+deb8u2) ... Preparing to unpack .../libgvc6_2.38.0-17_amd64.deb ... Unpacking libgvc6 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../graphviz_2.38.0-17_amd64.deb ... Unpacking graphviz (2.38.0-17) over (2.38.0-7) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../libdivsufsort3_2.0.1-2_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-2) ... Preparing to unpack .../hmmer_3.1b2+dfsg-5_amd64.deb ... Unpacking hmmer (3.1b2+dfsg-5) over (3.1b1-3) ... Selecting previously unselected package hyphy-common. Preparing to unpack .../hyphy-common_2.2.7+dfsg-1_all.deb ... Unpacking hyphy-common (2.2.7+dfsg-1) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../libnl-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-3-200:amd64 (3.2.27-2) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../libnl-route-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.2.27-2) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../libibverbs1_1.2.1-2_amd64.deb ... Unpacking libibverbs1 (1.2.1-2) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../libpsm-infinipath1_3.3+19.g67c0807.open-3_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Selecting previously unselected package librdmacm1. Preparing to unpack .../librdmacm1_1.1.0-2_amd64.deb ... Unpacking librdmacm1 (1.1.0-2) ... Selecting previously unselected package libfabric1. Preparing to unpack .../libfabric1_1.4.0-1_amd64.deb ... Unpacking libfabric1 (1.4.0-1) ... Preparing to unpack .../libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../libnuma1_2.0.11-2.1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.11-2.1) ... Selecting previously unselected package libhwloc5:amd64. Preparing to unpack .../libhwloc5_1.11.5-1_amd64.deb ... Unpacking libhwloc5:amd64 (1.11.5-1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../libpciaccess0_0.13.4-1+b2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.13.4-1+b2) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../ocl-icd-libopencl1_2.2.11-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../libhwloc-plugins_1.11.5-1_amd64.deb ... Unpacking libhwloc-plugins (1.11.5-1) ... Selecting previously unselected package libopenmpi2:amd64. Preparing to unpack .../libopenmpi2_2.0.2-2_amd64.deb ... Unpacking libopenmpi2:amd64 (2.0.2-2) ... Selecting previously unselected package hyphy-mpi. Preparing to unpack .../hyphy-mpi_2.2.7+dfsg-1+b2_amd64.deb ... Unpacking hyphy-mpi (2.2.7+dfsg-1+b2) ... Selecting previously unselected package libmodule-load-conditional-perl. Preparing to unpack .../libmodule-load-conditional-perl_0.68-1_all.deb ... Unpacking libmodule-load-conditional-perl (0.68-1) ... Preparing to unpack .../libarchive-extract-perl_0.80-1_all.deb ... Unpacking libarchive-extract-perl (0.80-1) over (0.72-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../libtry-tiny-perl_0.28-1_all.deb ... Unpacking libtry-tiny-perl (0.28-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../libmodule-implementation-perl_0.09-1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../libvariable-magic-perl_0.61-1_amd64.deb ... Unpacking libvariable-magic-perl (0.61-1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../libb-hooks-endofscope-perl_0.21-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.21-1) ... Selecting previously unselected package libcpan-changes-perl. Preparing to unpack .../libcpan-changes-perl_0.400002-1_all.deb ... Unpacking libcpan-changes-perl (0.400002-1) ... Preparing to unpack .../libcupsfilters1_1.11.6-3_amd64.deb ... Unpacking libcupsfilters1:amd64 (1.11.6-3) over (1.0.61-5+deb8u3) ... Selecting previously unselected package libdata-perl-perl. Preparing to unpack .../libdata-perl-perl_0.002009-1_all.deb ... Unpacking libdata-perl-perl (0.002009-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../libdrm2_2.4.74-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.74-1) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../libdrm-intel1_2.4.74-1_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.74-1) ... Selecting previously unselected package libfile-slurp-perl. Preparing to unpack .../libfile-slurp-perl_9999.19-6_all.deb ... Unpacking libfile-slurp-perl (9999.19-6) ... Selecting previously unselected package libparams-validate-perl. Preparing to unpack .../libparams-validate-perl_1.26-1_amd64.deb ... Unpacking libparams-validate-perl (1.26-1) ... Selecting previously unselected package libgetopt-long-descriptive-perl. Preparing to unpack .../libgetopt-long-descriptive-perl_0.100-1_all.deb ... Unpacking libgetopt-long-descriptive-perl (0.100-1) ... Selecting previously unselected package libgts-bin. Preparing to unpack .../libgts-bin_0.7.6+darcs121130-4_amd64.deb ... Unpacking libgts-bin (0.7.6+darcs121130-4) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../libxfixes3_1%3a5.0.3-1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.3-1) ... Selecting previously unselected package beignet-opencl-icd:amd64. Preparing to unpack .../beignet-opencl-icd_1.3.0-4_amd64.deb ... Unpacking beignet-opencl-icd:amd64 (1.3.0-4) ... Selecting previously unselected package libhmsbeagle1v5. Preparing to unpack .../libhmsbeagle1v5_2.1.2+20160831-5_amd64.deb ... Unpacking libhmsbeagle1v5 (2.1.2+20160831-5) ... Selecting previously unselected package libhts1:amd64. Preparing to unpack .../libhts1_1.3.2-2_amd64.deb ... Unpacking libhts1:amd64 (1.3.2-2) ... Selecting previously unselected package libmath-random-isaac-xs-perl. Preparing to unpack .../libmath-random-isaac-xs-perl_1.004-2+b2_amd64.deb ... Unpacking libmath-random-isaac-xs-perl (1.004-2+b2) ... Selecting previously unselected package libmoox-handlesvia-perl. Preparing to unpack .../libmoox-handlesvia-perl_0.001008-2_all.deb ... Unpacking libmoox-handlesvia-perl (0.001008-2) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../libpackage-stash-perl_0.37-1_all.deb ... Unpacking libpackage-stash-perl (0.37-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../libsub-identify-perl_0.12-2+b1_amd64.deb ... Unpacking libsub-identify-perl (0.12-2+b1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../libnamespace-clean-perl_0.27-1_all.deb ... Unpacking libnamespace-clean-perl (0.27-1) ... Selecting previously unselected package libnamespace-autoclean-perl. Preparing to unpack .../libnamespace-autoclean-perl_0.28-1_all.deb ... Unpacking libnamespace-autoclean-perl (0.28-1) ... Selecting previously unselected package libpackage-stash-xs-perl. Preparing to unpack .../libpackage-stash-xs-perl_0.28-3+b1_amd64.deb ... Unpacking libpackage-stash-xs-perl (0.28-3+b1) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../libpath-tiny-perl_0.100-1_all.deb ... Unpacking libpath-tiny-perl (0.100-1) ... Selecting previously unselected package libpod-markdown-perl. Preparing to unpack .../libpod-markdown-perl_3.005000-1_all.deb ... Unpacking libpod-markdown-perl (3.005000-1) ... Preparing to unpack .../libpod-readme-perl_1.1.2-1_all.deb ... Unpacking libpod-readme-perl (1.1.2-1) over (0.11-1) ... Preparing to unpack .../libsasl2-modules_2.1.27~101-g0780600+dfsg-3_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3) over (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libunicode-utf8-perl. Preparing to unpack .../libunicode-utf8-perl_0.60-1+b3_amd64.deb ... Unpacking libunicode-utf8-perl (0.60-1+b3) ... Selecting previously unselected package libxtables12:amd64. Preparing to unpack .../libxtables12_1.6.0+snapshot20161117-6_amd64.deb ... Unpacking libxtables12:amd64 (1.6.0+snapshot20161117-6) ... Preparing to unpack .../lynx-cur_2.8.9dev11-1_all.deb ... Removing obsolete conffile /etc/lynx-cur/lynx.cfg ... Removing obsolete conffile /etc/lynx-cur/lynx.lss ... Unpacking lynx-cur (2.8.9dev11-1) over (2.8.9dev1-2+deb8u1) ... Preparing to unpack .../lynx_2.8.9dev11-1_amd64.deb ... Unpacking lynx (2.8.9dev11-1) over (2.8.9dev1-2+deb8u1) ... Selecting previously unselected package lynx-common. Preparing to unpack .../lynx-common_2.8.9dev11-1_all.deb ... Unpacking lynx-common (2.8.9dev11-1) ... Preparing to unpack .../archives/maq_0.7.1-7_amd64.deb ... Unpacking maq (0.7.1-7) over (0.7.1-5) ... Preparing to unpack .../mustang_3.2.3-1_amd64.deb ... Unpacking mustang (3.2.3-1) over (3.2.2-1) ... Preparing to unpack .../openssl_1.1.0f-3+deb9u2_amd64.deb ... Unpacking openssl (1.1.0f-3+deb9u2) over (1.0.1t-1+deb8u8) ... Selecting previously unselected package phylip. Preparing to unpack .../phylip_1%3a3.696+dfsg-5_amd64.deb ... Unpacking phylip (1:3.696+dfsg-5) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../openmpi-common_2.0.2-2_all.deb ... Unpacking openmpi-common (2.0.2-2) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../openmpi-bin_2.0.2-2_amd64.deb ... Unpacking openmpi-bin (2.0.2-2) ... Preparing to unpack .../phyml_3%3a3.2.0+dfsg-7+b1_amd64.deb ... Unpacking phyml (3:3.2.0+dfsg-7+b1) over (2:20120412-2) ... Preparing to unpack .../prank_0.0.150803-2_amd64.deb ... Unpacking prank (0.0.150803-2) over (0.0.140110-1) ... Preparing to unpack .../primer3_2.3.7-3_amd64.deb ... Unpacking primer3 (2.3.7-3) over (2.3.6-1) ... Preparing to unpack .../probalign_1.4-5_amd64.deb ... Unpacking probalign (1.4-5) over (1.4-3) ... Preparing to unpack .../probcons_1.12-11_amd64.deb ... Unpacking probcons (1.12-11) over (1.12-9) ... Selecting previously unselected package ruby-did-you-mean. Preparing to unpack .../ruby-did-you-mean_1.0.0-2_all.deb ... Unpacking ruby-did-you-mean (1.0.0-2) ... Selecting previously unselected package ruby-minitest. Preparing to unpack .../ruby-minitest_5.9.0-1_all.deb ... Unpacking ruby-minitest (5.9.0-1) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../ruby-net-telnet_0.1.1-2_all.deb ... Unpacking ruby-net-telnet (0.1.1-2) ... Selecting previously unselected package ruby-power-assert. Preparing to unpack .../ruby-power-assert_0.3.0-1_all.deb ... Unpacking ruby-power-assert (0.3.0-1) ... Selecting previously unselected package ruby-test-unit. Preparing to unpack .../ruby-test-unit_3.1.7-2_all.deb ... Unpacking ruby-test-unit (3.1.7-2) ... Selecting previously unselected package libruby2.3:amd64. Preparing to unpack .../libruby2.3_2.3.3-1+deb9u2_amd64.deb ... Unpacking libruby2.3:amd64 (2.3.3-1+deb9u2) ... Selecting previously unselected package ruby2.3. Preparing to unpack .../ruby2.3_2.3.3-1+deb9u2_amd64.deb ... Unpacking ruby2.3 (2.3.3-1+deb9u2) ... Preparing to unpack .../ruby_1%3a2.3.3_amd64.deb ... Unpacking ruby (1:2.3.3) over (1:2.1.5+deb8u2) ... Selecting previously unselected package rake. Preparing to unpack .../archives/rake_10.5.0-2_all.deb ... Unpacking rake (10.5.0-2) ... Selecting previously unselected package raxml. Preparing to unpack .../raxml_8.2.9+dfsg-1+b1_amd64.deb ... Unpacking raxml (8.2.9+dfsg-1+b1) ... Preparing to unpack .../samtools_1.3.1-3_amd64.deb ... Unpacking samtools (1.3.1-3) over (0.1.19-1) ... Preparing to unpack .../t-coffee_11.00.8cbe486-5_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-5) over (11.00.8cbe486-1) ... Preparing to unpack .../tigr-glimmer_3.02b-1_amd64.deb ... Unpacking tigr-glimmer (3.02b-1) over (3.02-3) ... Selecting previously unselected package unzip. Preparing to unpack .../unzip_6.0-21_amd64.deb ... Unpacking unzip (6.0-21) ... Preparing to unpack .../wise_2.4.1-19_amd64.deb ... Unpacking wise (2.4.1-19) over (2.4.1-17) ... Preparing to unpack .../wise-data_2.4.1-19_all.deb ... Unpacking wise-data (2.4.1-19) over (2.4.1-17) ... Selecting previously unselected package zip. Preparing to unpack .../zip_3.0-11+b1_amd64.deb ... Unpacking zip (3.0-11+b1) ... Preparing to unpack .../bowtie_1.1.2-6_amd64.deb ... Unpacking bowtie (1.1.2-6) over (1.1.1-2) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../gnupg-l10n_2.1.18-8~deb9u3_all.deb ... Unpacking gnupg-l10n (2.1.18-8~deb9u3) ... Selecting previously unselected package med-config. Preparing to unpack .../med-config_3.0.1_all.deb ... Unpacking med-config (3.0.1) ... Selecting previously unselected package publicsuffix. Preparing to unpack .../publicsuffix_20181003.1334-0+deb9u1_all.deb ... Unpacking publicsuffix (20181003.1334-0+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Processing triggers for systemd (232-25+deb9u6) ... Setting up perl-modules-5.24 (5.24.1-3+deb9u4) ... Setting up libperl5.24:amd64 (5.24.1-3+deb9u4) ... Setting up perl (5.24.1-3+deb9u4) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Setting up perl-doc (5.24.1-3+deb9u4) ... Setting up libclass-xsaccessor-perl (1.19-2+b7) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Setting up libnghttp2-14:amd64 (1.18.1-1) ... Setting up libssl1.0.2:amd64 (1.0.2l-2+deb9u3) ... Setting up libssl1.1:amd64 (1.1.0f-3+deb9u2) ... Setting up libaprutil1:amd64 (1.5.4-3) ... Setting up apache2-utils (2.4.25-3+deb9u6) ... Setting up apache2-data (2.4.25-3+deb9u6) ... Setting up mime-support (3.60) ... Installing new version of config file /etc/mime.types ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u4) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u2) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u2) ... Setting up libaprutil1-ldap:amd64 (1.5.4-3) ... Setting up libicu57:amd64 (57.1-6+deb9u2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up apache2-bin (2.4.25-3+deb9u6) ... Setting up apache2 (2.4.25-3+deb9u6) ... Installing new version of config file /etc/apache2/apache2.conf ... Installing new version of config file /etc/apache2/conf-available/security.conf ... Installing new version of config file /etc/apache2/envvars ... Installing new version of config file /etc/apache2/mods-available/proxy_html.load ... Installing new version of config file /etc/apache2/mods-available/userdir.conf ... Installing new version of config file /etc/apache2/sites-available/default-ssl.conf ... Installing new version of config file /etc/cron.daily/apache2 ... Installing new version of config file /etc/init.d/apache2 ... Created symlink /etc/systemd/system/multi-user.target.wants/apache2.service → /lib/systemd/system/apache2.service. Created symlink /etc/systemd/system/multi-user.target.wants/apache-htcacheclean.service → /lib/systemd/system/apache-htcacheclean.service. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Removing obsolete conffile /etc/bash_completion.d/apache2 ... insserv: warning: current start runlevel(s) (empty) of script `apache-htcacheclean' overrides LSB defaults (2 3 4 5). insserv: warning: current stop runlevel(s) (0 1 2 3 4 5 6) of script `apache-htcacheclean' overrides LSB defaults (0 1 6). Setting up libcpan-meta-perl (2.150010-1) ... Setting up libapache2-mod-perl2 (2.0.10-2) ... apache2_invoke perl: already enabled Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libfcgi-perl (0.78-2) ... Setting up ncbi-data (6.1.20170106-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up python (2.7.13-2) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up libmariadbclient18:amd64 (10.1.26-0+deb9u1) ... Setting up libdbi-perl (1.636-1+b1) ... Setting up libdbd-mysql-perl (4.041-2) ... Setting up libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcrypt-random-seed-perl (0.03-1) ... Setting up libmath-random-isaac-perl (1.003-1) ... Setting up libbytes-random-secure-perl (0.28-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libcrypt-ssleay-perl (0.73.04-2) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libyaml-libyaml-perl (0.63-2) ... Setting up libsub-name-perl (0.21-1) ... Setting up libindirect-perl (0.37-1+b1) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up libpng16-16:amd64 (1.6.28-1) ... Setting up perl-tk (1:804.033-1+b3) ... Setting up libpq5:amd64 (9.6.10-0+deb9u1) ... Setting up libdbd-pg-perl (3.5.3-1+b2) ... Setting up libbit-vector-perl (7.4-1+b2) ... Setting up libdate-calc-perl (6.4-1) ... Setting up libdate-calc-xs-perl (6.4-1+b2) ... Setting up sqlite3 (3.16.2-5+deb9u1) ... Setting up libdbd-sqlite3-perl (1.54-1) ... Setting up libguard-perl (1.023-1+b2) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u8) ... Setting up libstaden-read11:amd64 (1.14.8-2) ... Setting up libbio-scf-perl (1.03-3) ... Setting up libparams-classify-perl (0.013-6+b1) ... Setting up libparams-util-perl (1.07-3+b1) ... Setting up libpadwalker-perl (2.2-2+b1) ... Setting up libstring-approx-perl (3.27-1+b4) ... Setting up libconvert-binary-c-perl (0.78-1+b1) ... Setting up libb-hooks-op-check-perl (0.19-3+b1) ... Setting up liblexical-sealrequirehints-perl (0.010-1+b1) ... Setting up libmultidimensional-perl (0.012-1+b1) ... Setting up libtext-charwidth-perl (0.04-7+b5) ... Setting up libbareword-filehandles-perl (0.004-1+b1) ... Setting up libclone-perl (0.38-2+b1) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libace-perl (1.92-4+b1) ... Setting up libtext-iconv-perl (1.7-5+b4) ... Setting up libxml-libxslt-perl (1.95-1+b1) ... Setting up libbsd-resource-perl (1.2910-1+b1) ... Setting up libalgorithm-diff-xs-perl (0.04-4+b2) ... Setting up libterm-readkey-perl (2.37-1) ... Setting up libfreetype6:amd64 (2.6.3-3.2) ... Setting up libwebp6:amd64 (0.5.2-1) ... Setting up libgd3:amd64 (2.2.4-2+deb9u3) ... Setting up libgd-perl (2.53-3) ... Setting up libdevel-caller-perl (2.06-1+b4) ... Setting up libunicode-map-perl (0.112-11+b3) ... Setting up libtype-tiny-xs-perl (0.012-1+b2) ... Setting up libtext-soundex-perl (3.4-1+b4) ... Setting up libcommon-sense-perl (3.74-2) ... Setting up libtypes-serialiser-perl (1.0-1) ... Setting up libjson-xs-perl (3.030-1) ... Setting up libev-perl (4.22-1+b1) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Setting up libossp-uuid-perl (1.6.2-1.5+b4) ... Setting up libasync-interrupt-perl (1.21-1+b2) ... Setting up libio-pty-perl (1:1.08-1.1+b2) ... Setting up libanyevent-perl (7.130-2) ... Setting up libbio-coordinate-perl (1.7.1-1) ... Setting up gbrowse (2.56+dfsg-2) ... Installing new version of config file /etc/default/gbrowse-slave ... Installing new version of config file /etc/gbrowse/GBrowse.conf ... Installing new version of config file /etc/gbrowse/languages/POSIX.pm ... Installing new version of config file /etc/gbrowse/plugins/Blat.pm ... Installing new version of config file /etc/gbrowse/plugins/FilterTest.pm ... Installing new version of config file /etc/gbrowse/plugins/PrimerDesigner.pm ... Installing new version of config file /etc/gbrowse/plugins/RestrictionAnnotator.pm ... Installing new version of config file /etc/gbrowse/plugins/Submitter.pm ... Installing new version of config file /etc/gbrowse/renderfarm.conf ... Installing new version of config file /etc/gbrowse/slave_preload.conf ... Installing new version of config file /etc/gbrowse/synteny/rice_synteny.conf ... Installing new version of config file /etc/gbrowse/synteny/wild_rice_synteny.conf ... Installing new version of config file /etc/gbrowse/yeast_chr1+2.conf ... Installing new version of config file /etc/init.d/gbrowse-slave ... apache2_invoke gbrowse: already enabled Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of reload. Setting up gbrowse-calign (2.56+dfsg-2) ... Setting up libipc-sharelite-perl (0.17-4) ... Setting up libclass-c3-xs-perl (0.14-1+b1) ... Setting up libdevel-lexalias-perl (0.05-1+b4) ... Setting up liblist-moreutils-perl (0.416-1+b1) ... Setting up ncbi-blast+-legacy (2.6.0-1) ... Setting up blast2 (1:2.6.0-1) ... Setting up libncbi6:amd64 (6.1.20170106-2) ... Setting up libelf1:amd64 (0.168-1) ... Setting up libmnl0:amd64 (1.0.4-2) ... Setting up iproute2 (4.9.0-1+deb9u1) ... Installing new version of config file /etc/iproute2/rt_dsfield ... Installing new version of config file /etc/iproute2/rt_protos ... Setting up ifupdown (0.8.19) ... Installing new version of config file /etc/init.d/networking ... Created symlink /etc/systemd/system/multi-user.target.wants/networking.service → /lib/systemd/system/networking.service. Created symlink /etc/systemd/system/network-online.target.wants/networking.service → /lib/systemd/system/networking.service. Setting up udev (232-25+deb9u6) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udevmonitor.conf ... Installing new version of config file /etc/udev/udev.conf ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. Removing obsolete conffile /etc/init.d/udev-finish ... Removing obsolete conffile /etc/init/udev-finish.conf ... Removing obsolete conffile /etc/init/udev-fallback-graphics.conf ... Removing obsolete conffile /etc/modprobe.d/fbdev-blacklist.conf ... Setting up apt (1.4.8) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Created symlink /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer → /lib/systemd/system/apt-daily-upgrade.timer. Created symlink /etc/systemd/system/timers.target.wants/apt-daily.timer → /lib/systemd/system/apt-daily.timer. Removing obsolete conffile /etc/cron.daily/apt ... Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up fonts-lato (2.0-1) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libisc-export160 (1:9.10.3.dfsg.P4-12.3+deb9u4) ... Setting up libdns-export162 (1:9.10.3.dfsg.P4-12.3+deb9u4) ... Setting up isc-dhcp-client (4.3.5-3+deb9u1) ... Installing new version of config file /etc/dhcp/dhclient-exit-hooks.d/rfc3442-classless-routes ... Installing new version of config file /etc/dhcp/dhclient.conf ... Setting up isc-dhcp-common (4.3.5-3+deb9u1) ... Setting up bzip2 (1.0.6-8.1) ... Setting up libdbus-1-3:amd64 (1.10.26-0+deb9u1) ... Setting up dbus (1.10.26-0+deb9u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Removing obsolete conffile /etc/dbus-1/session.conf ... Removing obsolete conffile /etc/dbus-1/system.conf ... Setting up libmagic-mgc (1:5.30-1+deb9u2) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u2) ... Setting up file (1:5.30-1+deb9u2) ... Setting up manpages (4.10-2) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up amap-align (2.2-6) ... Setting up bedtools (2.26.0+dfsg-3) ... Setting up libbio-perl-run-perl (1.7.1-3) ... Setting up bioperl-run (1.7.1-3) ... Setting up menu (2.1.47+b1) ... Setting up clustalo (1.2.4-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up dirmngr (2.1.18-8~deb9u3) ... Setting up libhpdf-2.2.1 (2.2.1-1.1+b1) ... Setting up emboss-lib (6.6.0+dfsg-6) ... Setting up emboss-data (6.6.0+dfsg-6) ... Setting up emboss (6.6.0+dfsg-6) ... Setting up fonts-noto-mono (20161116-1) ... Setting up mummer (3.23+dfsg-2) ... Setting up fsa (1.15.9+dfsg-3) ... Setting up libavahi-client3:amd64 (0.6.32-2) ... Setting up libcups2:amd64 (2.2.1-8+deb9u2) ... Setting up libcupsimage2:amd64 (2.2.1-8+deb9u2) ... Setting up libopenjp2-7:amd64 (2.1.2-1.1+deb9u2) ... Setting up libgs9-common (9.20~dfsg-3.2+deb9u5) ... Setting up libgs9:amd64 (9.20~dfsg-3.2+deb9u5) ... Setting up ghostscript (9.20~dfsg-3.2+deb9u5) ... Setting up libann0 (1.1.2+doc-6) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libgvc6 (2.38.0-17) ... Setting up graphviz (2.38.0-17) ... Setting up libdivsufsort3:amd64 (2.0.1-2) ... Setting up hmmer (3.1b2+dfsg-5) ... Setting up hyphy-common (2.2.7+dfsg-1) ... Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up libibverbs1 (1.2.1-2) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up librdmacm1 (1.1.0-2) ... Setting up libfabric1 (1.4.0-1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up libopenmpi2:amd64 (2.0.2-2) ... Setting up hyphy-mpi (2.2.7+dfsg-1+b2) ... Setting up libmodule-load-conditional-perl (0.68-1) ... Setting up libarchive-extract-perl (0.80-1) ... Setting up libtry-tiny-perl (0.28-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libvariable-magic-perl (0.61-1) ... Setting up libb-hooks-endofscope-perl (0.21-1) ... Setting up libcpan-changes-perl (0.400002-1) ... Setting up libcupsfilters1:amd64 (1.11.6-3) ... Setting up libdata-perl-perl (0.002009-1) ... Setting up libdrm2:amd64 (2.4.74-1) ... Setting up libdrm-intel1:amd64 (2.4.74-1) ... Setting up libfile-slurp-perl (9999.19-6) ... Setting up libparams-validate-perl (1.26-1) ... Setting up libgetopt-long-descriptive-perl (0.100-1) ... Setting up libgts-bin (0.7.6+darcs121130-4) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up beignet-opencl-icd:amd64 (1.3.0-4) ... Setting up libhmsbeagle1v5 (2.1.2+20160831-5) ... Setting up libhts1:amd64 (1.3.2-2) ... Setting up libmath-random-isaac-xs-perl (1.004-2+b2) ... Setting up libmoox-handlesvia-perl (0.001008-2) ... Setting up libpackage-stash-perl (0.37-1) ... Setting up libsub-identify-perl (0.12-2+b1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libnamespace-autoclean-perl (0.28-1) ... Setting up libpackage-stash-xs-perl (0.28-3+b1) ... Setting up libpath-tiny-perl (0.100-1) ... Setting up libpod-markdown-perl (3.005000-1) ... Setting up libpod-readme-perl (1.1.2-1) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3) ... Setting up libunicode-utf8-perl (0.60-1+b3) ... Setting up libxtables12:amd64 (1.6.0+snapshot20161117-6) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up lynx (2.8.9dev11-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx-cur (2.8.9dev11-1) ... Setting up maq (0.7.1-7) ... Setting up mustang (3.2.3-1) ... Setting up openssl (1.1.0f-3+deb9u2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up phylip (1:3.696+dfsg-5) ... Setting up openmpi-common (2.0.2-2) ... Setting up openmpi-bin (2.0.2-2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up phyml (3:3.2.0+dfsg-7+b1) ... Setting up prank (0.0.150803-2) ... Setting up primer3 (2.3.7-3) ... Installing new version of config file /etc/primer3_config/interpretations/stack_i.dh ... Installing new version of config file /etc/primer3_config/interpretations/stack_i.ds ... Installing new version of config file /etc/primer3_config/interpretations/stackmm_i_mm.dh ... Installing new version of config file /etc/primer3_config/interpretations/stackmm_i_mm.ds ... Installing new version of config file /etc/primer3_config/interpretations/tstack2_i.ds ... Installing new version of config file /etc/primer3_config/stackmm.dh ... Installing new version of config file /etc/primer3_config/stackmm.ds ... Installing new version of config file /etc/primer3_config/tstack2.ds ... Setting up probalign (1.4-5) ... Setting up probcons (1.12-11) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up ruby-minitest (5.9.0-1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up rake (10.5.0-2) ... Setting up libruby2.3:amd64 (2.3.3-1+deb9u2) ... Setting up ruby2.3 (2.3.3-1+deb9u2) ... Setting up ruby (1:2.3.3) ... Setting up raxml (8.2.9+dfsg-1+b1) ... Setting up samtools (1.3.1-3) ... Setting up t-coffee (11.00.8cbe486-5) ... Setting up tigr-glimmer (3.02b-1) ... Setting up unzip (6.0-21) ... Setting up wise-data (2.4.1-19) ... Setting up wise (2.4.1-19) ... Setting up zip (3.0-11+b1) ... Setting up bowtie (1.1.2-6) ... Setting up gnupg-l10n (2.1.18-8~deb9u3) ... Setting up publicsuffix (20181003.1334-0+deb9u1) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.6.96) ... Setting up med-config (3.0.1) ... Adding group `med' (GID 154) ... Done. Processing triggers for shared-mime-info (1.8-1+deb9u1) ... Processing triggers for fontconfig (2.11.0-6.7+b1) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... Processing triggers for systemd (232-25+deb9u6) ... 3m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-yf', 'dist-upgrade'] 3m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m9.0s DUMP: 41b22e4ba8141cb867e2975265289448 - 3m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 3m9.3s DUMP: Package: gbrowse-calign Source: gbrowse Version: 2.56+dfsg-2 Installed-Size: 76 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.24.1-1), perlapi-5.24.1, libc6 (>= 2.4), gbrowse Description-en: CAlign helper Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). . This package provides the CAlign helper for use with Realign. It speeds up Smith-Waterman alignment. Description-md5: 52106883c9df300bab833de801839ea2 Homepage: http://www.gbrowse.org/ Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.56+dfsg-2_amd64.deb Size: 35848 MD5sum: b7465ab97d2c9802d3a2575cd6bd2ef1 SHA256: 2a63dd4137a9d137c55ab55172211c8043417a312272f90a74e6d4effb1c7052 3m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 3m9.3s INFO: apt-cache knows about the following packages: gbrowse-calign 3m9.3s INFO: Running scripts pre_install 3m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_database-server'] 3m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_database-server'] 3m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_exceptions'] 3m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_exceptions'] 3m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_extras'] 3m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_extras'] 3m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture'] 3m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture'] 3m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy'] 3m9.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian stretch/main amd64 Packages release v=9.6,o=Debian,a=stable,n=stretch,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 3m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy'] 3m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy', 'gbrowse-calign'] 3m9.4s DUMP: gbrowse-calign: Installed: 2.56+dfsg-2 Candidate: 2.56+dfsg-2 Version table: *** 2.56+dfsg-2 500 500 http://mirror-ubc.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 3m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy', 'gbrowse-calign'] 3m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-y', 'install', 'gbrowse-calign'] 3m9.8s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse-calign is already the newest version (2.56+dfsg-2). The following packages were automatically installed and are no longer required: ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libb-hooks-endofscope-perl libclass-c3-perl libclass-c3-xs-perl libcpan-changes-perl libcpan-meta-perl libdata-optlist-perl libdata-perl-perl libdata-section-perl libdns-export100 libdns-export162 libelf1 libfile-slurp-perl libgetopt-long-descriptive-perl libgnutls-deb0-28 libheap-perl libhogweed2 libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjasper1 liblog-message-perl liblog-message-simple-perl liblua5.1-0 libmnl0 libmodule-build-perl libmodule-implementation-perl libmodule-load-conditional-perl libmodule-pluggable-perl libmodule-signature-perl libmoox-handlesvia-perl libmro-compat-perl libmysqlclient18 libnamespace-autoclean-perl libnamespace-clean-perl libncbi6 libnettle4 libpackage-constants-perl libpackage-stash-perl libpackage-stash-xs-perl libparams-util-perl libparams-validate-perl libpath-tiny-perl libpng12-0 libpod-latex-perl libpod-markdown-perl libpod-readme-perl libregexp-common-perl libsoftware-license-perl libstaden-read1 libsub-exporter-perl libsub-identify-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libtry-tiny-perl libunicode-utf8-perl libvariable-magic-perl libvpx1 libxtables10 libxtables12 lynx-cur Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-y', 'install', 'gbrowse-calign'] 3m9.8s INFO: Running scripts post_install 3m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_install_exceptions'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_install_exceptions'] 3m9.9s INFO: Running scripts post_distupgrade 3m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_exceptions'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_exceptions'] 3m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_zz_backports'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_distupgrade_zz_backports'] 3m9.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m11.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m11.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m14.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m14.1s INFO: Running scripts pre_install 3m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_database-server'] 3m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_database-server'] 3m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_exceptions'] 3m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_exceptions'] 3m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_extras'] 3m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_extras'] 3m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture'] 3m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture'] 3m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy'] 3m14.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian stretch/main amd64 Packages release v=9.6,o=Debian,a=stable,n=stretch,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 3m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy'] 3m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy', 'gbrowse-calign'] 3m14.2s DUMP: gbrowse-calign: Installed: 2.56+dfsg-2 Candidate: 2.56+dfsg-2 Version table: *** 2.56+dfsg-2 500 500 http://mirror-ubc.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 3m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-cache', 'policy', 'gbrowse-calign'] 3m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-y', 'install', 'gbrowse-calign=2.56+dfsg-2'] 3m14.7s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse-calign is already the newest version (2.56+dfsg-2). The following packages were automatically installed and are no longer required: ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libb-hooks-endofscope-perl libclass-c3-perl libclass-c3-xs-perl libcpan-changes-perl libcpan-meta-perl libdata-optlist-perl libdata-perl-perl libdata-section-perl libdns-export100 libdns-export162 libelf1 libfile-slurp-perl libgetopt-long-descriptive-perl libgnutls-deb0-28 libheap-perl libhogweed2 libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjasper1 liblog-message-perl liblog-message-simple-perl liblua5.1-0 libmnl0 libmodule-build-perl libmodule-implementation-perl libmodule-load-conditional-perl libmodule-pluggable-perl libmodule-signature-perl libmoox-handlesvia-perl libmro-compat-perl libmysqlclient18 libnamespace-autoclean-perl libnamespace-clean-perl libncbi6 libnettle4 libpackage-constants-perl libpackage-stash-perl libpackage-stash-xs-perl libparams-util-perl libparams-validate-perl libpath-tiny-perl libpng12-0 libpod-latex-perl libpod-markdown-perl libpod-readme-perl libregexp-common-perl libsoftware-license-perl libstaden-read1 libsub-exporter-perl libsub-identify-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libtry-tiny-perl libunicode-utf8-perl libvariable-magic-perl libvpx1 libxtables10 libxtables12 lynx-cur Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', '-y', 'install', 'gbrowse-calign=2.56+dfsg-2'] 3m14.7s INFO: Running scripts post_install 3m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_install_exceptions'] 3m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_install_exceptions'] 3m14.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m16.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m16.7s DUMP: install ok installed acl acl 2.2.52-3+b1 install ok installed adduser adduser 3.115 install ok installed amap-align amap-align 2.2-6 install ok installed apache2 apache2 2.4.25-3+deb9u6 install ok installed apache2-bin apache2-bin 2.4.25-3+deb9u6 install ok installed apache2-data apache2-data 2.4.25-3+deb9u6 install ok installed apache2-utils apache2-utils 2.4.25-3+deb9u6 install ok installed apt apt 1.4.8 install ok installed base-files base-files 9.9+deb9u6 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bedtools bedtools 2.26.0+dfsg-3 install ok installed beignet-opencl-icd:amd64 beignet-opencl-icd 1.3.0-4 install ok installed bioperl bioperl 1.7.1-2 install ok installed bioperl-run bioperl-run 1.7.1-3 install ok installed blast2 blast2 1:2.6.0-1 install ok installed blends-common blends-common 0.6.96 install ok installed bowtie bowtie 1.1.2-6 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed bwa bwa 0.7.15-2 install ok installed bzip2 bzip2 1.0.6-8.1 install ok installed ca-certificates ca-certificates 20161130+nmu1+deb9u1 install ok installed clustalo clustalo 1.2.4-1 install ok installed clustalw clustalw 2.1+lgpl-5 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed dbus dbus 1.10.26-0+deb9u1 install ok installed debconf debconf 1.5.61 install ok installed debconf-i18n debconf-i18n 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5 install ok installed debianutils debianutils 4.8.1.1 install ok installed dialign dialign 2.2.1-8 install ok installed dialign-tx dialign-tx 1.0.2-9 install ok installed dialign-tx-data dialign-tx-data 1.0.2-9 install ok installed diffutils diffutils 1:3.5-3 install ok installed dirmngr dirmngr 2.1.18-8~deb9u3 install ok installed dmsetup dmsetup 2:1.02.137-2 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2 install ok installed e2fsprogs e2fsprogs 1.43.4-2 install ok installed emboss emboss 6.6.0+dfsg-6 install ok installed emboss-data emboss-data 6.6.0+dfsg-6 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-6 install ok installed exonerate exonerate 2.4.0-2 install ok installed file file 1:5.30-1+deb9u2 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fontconfig fontconfig 2.11.0-6.7+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 deinstall ok config-files fonts-droid fonts-droid 1:4.4.4r2-6 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-lato fonts-lato 2.0-1 install ok installed fonts-liberation fonts-liberation 1:1.07.4-2 install ok installed fonts-noto-mono fonts-noto-mono 20161116-1 install ok installed fsa fsa 1.15.9+dfsg-3 install ok installed gawk gawk 1:4.1.4+dfsg-1 install ok installed gbrowse gbrowse 2.56+dfsg-2 install ok installed gbrowse-calign gbrowse-calign 2.56+dfsg-2 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed ghostscript ghostscript 9.20~dfsg-3.2+deb9u5 install ok installed gnupg gnupg 2.1.18-8~deb9u3 install ok installed gnupg-agent gnupg-agent 2.1.18-8~deb9u3 install ok installed gnupg-l10n gnupg-l10n 2.1.18-8~deb9u3 install ok installed gpgv gpgv 2.1.18-8~deb9u3 install ok installed graphviz graphviz 2.38.0-17 install ok installed grep grep 2.27-2 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.3 install ok installed gzip gzip 1.6-5+b1 install ok installed hmmer hmmer 3.1b2+dfsg-5 install ok installed hostname hostname 3.18+b1 install ok installed hyphy-common hyphy-common 2.2.7+dfsg-1 install ok installed hyphy-mpi hyphy-mpi 2.2.7+dfsg-1+b2 install ok installed ifupdown ifupdown 0.8.19 install ok installed infernal infernal 1.1.2-1 install ok installed init init 1.48 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed initscripts initscripts 2.88dsf-59.9 install ok installed insserv insserv 1.14.0-5.4+b1 install ok installed iproute2 iproute2 4.9.0-1+deb9u1 install ok installed isc-dhcp-client isc-dhcp-client 4.3.5-3+deb9u1 install ok installed isc-dhcp-common isc-dhcp-common 4.3.5-3+deb9u1 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-3 install ok installed krb5-locales krb5-locales 1.15-1+deb9u1 install ok installed libace-perl libace-perl 1.92-4+b1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.10-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-4+b2 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-3 install ok installed libann0 libann0 1.1.2+doc-6 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-2 install ok installed libanyevent-http-perl libanyevent-http-perl 2.23-1 install ok installed libanyevent-perl libanyevent-perl 7.130-2 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-1 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.10-2 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-1 install ok installed libapparmor1:amd64 libapparmor1 2.11.0-3+deb9u2 install ok installed libapr1:amd64 libapr1 1.5.2-5 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-3 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-3 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-3 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.8 install ok installed libarchive-extract-perl libarchive-extract-perl 0.80-1 install ok installed libargtable2-0 libargtable2-0 13-1 install ok installed libarray-compare-perl libarray-compare-perl 3.0.0-1 install ok installed libassuan0:amd64 libassuan0 2.4.3-2 install ok installed libasync-interrupt-perl libasync-interrupt-perl 1.21-1+b2 install ok installed libatm1:amd64 libatm1 1:2.5.1-2 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.32-2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.32-2 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.32-2 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.21-1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.19-3+b1 install ok installed libbareword-filehandles-perl libbareword-filehandles-perl 0.004-1+b1 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.720-1 install ok installed libbio-coordinate-perl libbio-coordinate-perl 1.7.1-1 install ok installed libbio-graphics-perl libbio-graphics-perl 2.40-1 install ok installed libbio-perl-perl libbio-perl-perl 1.7.1-2 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.1-3 install ok installed libbio-scf-perl libbio-scf-perl 1.03-3 install ok installed libbit-vector-perl libbit-vector-perl 7.4-1+b2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2910-1+b1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1 install ok installed libbytes-random-secure-perl libbytes-random-secure-perl 0.28-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u3 install ok installed libc6:amd64 libc6 2.24-11+deb9u3 install ok installed libcache-cache-perl libcache-cache-perl 1.08-2 install ok installed libcairo2:amd64 libcairo2 1.14.8-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcap2:amd64 libcap2 1:2.25-1 install ok installed libcap2-bin libcap2-bin 1:2.25-1 install ok installed libcarp-clan-perl libcarp-clan-perl 6.06-1 install ok installed libcdt5 libcdt5 2.38.0-17 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.12-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.35-1 install ok installed libcgi-session-perl libcgi-session-perl 4.48-3 install ok installed libcgraph6 libcgraph6 2.38.0-17 install ok installed libclass-c3-perl libclass-c3-perl 0.32-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.14-1+b1 install ok installed libclass-inspector-perl libclass-inspector-perl 1.31-1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.12-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-2+b7 install ok installed libclone-perl libclone-perl 0.38-2+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2 install ok installed libcommon-sense-perl libcommon-sense-perl 3.74-2 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.78-1+b1 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libcpan-changes-perl libcpan-changes-perl 0.400002-1 install ok installed libcpan-meta-perl libcpan-meta-perl 2.150010-1 install ok installed libcrypt-random-seed-perl libcrypt-random-seed-perl 0.03-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-2 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.73.04-2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.7.3-4 install ok installed libcups2:amd64 libcups2 2.2.1-8+deb9u2 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.11.6-3 install ok installed libcupsimage2:amd64 libcupsimage2 2.2.1-8+deb9u2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.52.1-5+deb9u8 install ok installed libdata-optlist-perl libdata-optlist-perl 0.110-1 install ok installed libdata-perl-perl libdata-perl-perl 0.002009-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdate-calc-perl libdate-calc-perl 6.4-1 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.4-1+b2 install ok installed libdate-manip-perl libdate-manip-perl 6.57-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.10-4+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.041-2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.5.3-1+b2 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.54-1 install ok installed libdbi-perl libdbi-perl 1.636-1+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.10.26-0+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-1+b4 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.14-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-1+b4 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.17-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.137-2 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-2 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libdns-export162 libdns-export162 1:9.10.3.dfsg.P4-12.3+deb9u4 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.74-1 install ok installed libdrm2:amd64 libdrm2 2.4.74-1 install ok installed libelf1:amd64 libelf1 0.168-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed liberror-perl liberror-perl 0.17024-1 install ok installed libev-perl libev-perl 4.22-1+b1 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u1 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.042-1 install ok installed libfabric1 libfabric1 1.4.0-1 install ok installed libfcgi-perl libfcgi-perl 0.78-2 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-slurp-perl libfile-slurp-perl 9999.19-6 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.003-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgd-perl libgd-perl 2.53-3 install ok installed libgd-svg-perl libgd-svg-perl 0.33-1 install ok installed libgd3:amd64 libgd3 2.2.4-2+deb9u3 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgetopt-long-descriptive-perl libgetopt-long-descriptive-perl 0.100-1 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.50.3-2 install ok installed libglib2.0-data libglib2.0-data 2.50.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u4 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgraph-perl libgraph-perl 1:0.96-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1 install ok installed libgraphviz-perl libgraphviz-perl 2.22-1 install ok installed libgs9:amd64 libgs9 9.20~dfsg-3.2+deb9u5 install ok installed libgs9-common libgs9-common 9.20~dfsg-3.2+deb9u5 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.15-1+deb9u1 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4 install ok installed libguard-perl libguard-perl 1.023-1+b2 install ok installed libgvc6 libgvc6 2.38.0-17 install ok installed libgvpr2 libgvpr2 2.38.0-17 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 1.4.2-1 install ok installed libheap-perl libheap-perl 0.80-3 install ok installed libhmsbeagle1v5 libhmsbeagle1v5 2.1.2+20160831-5 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+b2 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1+b1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.13-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-2 install ok installed libhts1:amd64 libhts1 1.3.2-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.11-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libhwloc-plugins libhwloc-plugins 1.11.5-1 install ok installed libhwloc5:amd64 libhwloc5 1.11.5-1 install ok installed libibverbs1 libibverbs1 1.2.1-2 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u2 install ok installed libidn11:amd64 libidn11 1.33-1 install ok installed libidn2-0:amd64 libidn2-0 0.16-1+deb9u1 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-12 install ok installed libimport-into-perl libimport-into-perl 1.002005-1 install ok installed libindirect-perl libindirect-perl 0.37-1+b1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1.1+b2 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.044-1 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.111-2 install ok installed libip4tc0:amd64 libip4tc0 1.6.0+snapshot20161117-6 install ok installed libipc-run-perl libipc-run-perl 0.94-1+deb9u1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export160 libisc-export160 1:9.10.3.dfsg.P4-12.3+deb9u4 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.13-4.1 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2 install ok installed libjs-jquery libjs-jquery 3.1.1-2 install ok installed libjs-prototype libjs-prototype 1.7.1-3 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2 install ok installed libjson-perl libjson-perl 2.90-1 install ok installed libjson-xs-perl libjson-xs-perl 3.030-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.15-1+deb9u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9 install ok installed libkmod2:amd64 libkmod2 23-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.15-1+deb9u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.15-1+deb9u1 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.8-4+deb9u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u2 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u2 install ok installed liblexical-sealrequirehints-perl liblexical-sealrequirehints-perl 0.010-1+b1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.416-1+b1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed libltdl7:amd64 libltdl7 2.4.6-2 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-8.1+b2 install ok installed liblua5.2-0:amd64 liblua5.2-0 5.2.4-1.1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmagic-mgc libmagic-mgc 1:5.30-1+deb9u2 install ok installed libmagic1:amd64 libmagic1 1:5.30-1+deb9u2 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmariadbclient18:amd64 libmariadbclient18 10.1.26-0+deb9u1 install ok installed libmath-derivative-perl libmath-derivative-perl 0.04-2 install ok installed libmath-random-isaac-perl libmath-random-isaac-perl 1.003-1 install ok installed libmath-random-isaac-xs-perl libmath-random-isaac-xs-perl 1.004-2+b2 install ok installed libmath-spline-perl libmath-spline-perl 0.02-1 install ok installed libmime-tools-perl libmime-tools-perl 5.508-1 install ok installed libmldbm-perl libmldbm-perl 2.05-2 install ok installed libmnl0:amd64 libmnl0 1.0.4-2 install ok installed libmodule-build-perl libmodule-build-perl 0.422000-1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-load-conditional-perl libmodule-load-conditional-perl 0.68-1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.2-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-2 install ok installed libmodule-signature-perl libmodule-signature-perl 0.81-1 install ok installed libmoo-perl libmoo-perl 2.002005-1 install ok installed libmoox-handlesvia-perl libmoox-handlesvia-perl 0.001008-2 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libmultidimensional-perl libmultidimensional-perl 0.012-1+b1 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.60-0+deb8u1 install ok installed libnamespace-autoclean-perl libnamespace-autoclean-perl 0.28-1 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-1 install ok installed libncbi6:amd64 libncbi6 6.1.20170106-2 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnet-http-perl libnet-http-perl 6.12-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.80-1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnettle6:amd64 libnettle6 3.3-1+b2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.18.1-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.2.27-2 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.2.27-2 install ok installed libnpth0:amd64 libnpth0 1.3-1 install ok installed libnuma1:amd64 libnuma1 2.0.11-2.1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.1.2-1.1+deb9u2 install ok installed libopenmpi2:amd64 libopenmpi2 2.0.2-2 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b4 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2 install ok installed libpackage-constants-perl libpackage-constants-perl 0.06-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.37-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.28-3+b1 install ok installed libpadwalker-perl libpadwalker-perl 2.2-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.40.5-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.40.5-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.40.5-1 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu5 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu5 install ok installed libparams-classify-perl libparams-classify-perl 0.013-6+b1 install ok installed libparams-util-perl libparams-util-perl 1.07-3+b1 install ok installed libparams-validate-perl libparams-validate-perl 1.26-1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967013+dfsg-1 install ok installed libpath-tiny-perl libpath-tiny-perl 0.100-1 install ok installed libpathplan4 libpathplan4 2.38.0-17 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.4-1+b2 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u4 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.34.0-1 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1 install ok installed libpod-latex-perl libpod-latex-perl 0.61-2 install ok installed libpod-markdown-perl libpod-markdown-perl 3.005000-1 install ok installed libpod-readme-perl libpod-readme-perl 1.1.2-1 install ok installed libpostscript-perl libpostscript-perl 0.06-2 install ok installed libpq5:amd64 libpq5 9.6.10-0+deb9u1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libpsl5:amd64 libpsl5 0.17.0-3 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+19.g67c0807.open-3 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.13-2 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.13-2+deb9u3 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.13-2+deb9u3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed librdmacm1 librdmacm1 1.1.0-2 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed libregexp-common-perl libregexp-common-perl 2016060801-1 install ok installed librole-tiny-perl librole-tiny-perl 2.000005-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-1+b1 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libruby2.3:amd64 libruby2.3 2.3.3-1+deb9u2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27~101-g0780600+dfsg-3 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3 install ok installed libseccomp2:amd64 libseccomp2 2.3.1-2.1+deb9u1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libset-scalar-perl libset-scalar-perl 1.29-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.10-5 install ok installed libslang2:amd64 libslang2 2.3.1-5 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.20-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103012-1 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2 install ok installed libssh2-1:amd64 libssh2-1 1.7.0-1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2l-2+deb9u3 install ok installed libssl1.1:amd64 libssl1.1 1.1.0f-3+deb9u2 install ok installed libstaden-read1 libstaden-read1 1.13.7-1 install ok installed libstaden-read11:amd64 libstaden-read11 1.14.8-2 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0612-1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libstrictures-perl libstrictures-perl 2.000003-1 install ok installed libstring-approx-perl libstring-approx-perl 3.27-1+b4 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-identify-perl libsub-identify-perl 0.12-2+b1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.21-1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-2 install ok installed libsvg-perl libsvg-perl 2.64-1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u6 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libterm-readkey-perl libterm-readkey-perl 2.37-1 install ok installed libterm-ui-perl libterm-ui-perl 0.46-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b5 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b4 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b4 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7.1 install ok installed libthai-data libthai-data 0.1.26-1 install ok installed libthai0:amd64 libthai0 0.1.26-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2 install ok installed libtiff5:amd64 libtiff5 4.0.8-2+deb9u2 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.29-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.28-1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.000005-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.012-1+b2 install ok installed libtypes-serialiser-perl libtypes-serialiser-perl 1.0-1 install ok installed libudev1:amd64 libudev1 232-25+deb9u6 install ok installed libunicode-map-perl libunicode-map-perl 0.112-11+b3 install ok installed libunicode-utf8-perl libunicode-utf8-perl 0.60-1+b3 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed liburi-perl liburi-perl 1.71-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-30 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libvariable-magic-perl libvariable-magic-perl 0.61-1 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-2 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u1 install ok installed libwebp6:amd64 libwebp6 0.5.2-1 install ok installed libwww-perl libwww-perl 6.15-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u1 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.12-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.12-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.38.0-17 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1+b2 install ok installed libxml-dom-perl libxml-dom-perl 1.44-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-2 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-5 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0128+dfsg-1+deb9u1 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.95-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-2+b1 install ok installed libxml-perl libxml-perl 0.08-2 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.56-1 install ok installed libxml-simple-perl libxml-simple-perl 2.22-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.40-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u2 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.29-2.1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libxtables12:amd64 libxtables12 1.6.0+snapshot20161117-6 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.7-2 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.63-2 install ok installed libyaml-perl libyaml-perl 1.21-1 install ok installed login login 1:4.4-4.1 install ok installed lsb-base lsb-base 9.20161125 install ok installed lynx lynx 2.8.9dev11-1 install ok installed lynx-common lynx-common 2.8.9dev11-1 install ok installed lynx-cur lynx-cur 2.8.9dev11-1 install ok installed mafft mafft 7.307-1 install ok installed manpages manpages 4.10-2 install ok installed maq maq 0.7.1-7 install ok installed mawk mawk 1.3.3-17+b3 install ok installed med-config med-config 3.0.1 install ok installed menu menu 2.1.47+b1 install ok installed mime-support mime-support 3.60 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u3 install ok installed mummer mummer 3.23+dfsg-2 install ok installed muscle muscle 1:3.8.31+dfsg-2 install ok installed mustang mustang 3.2.3-1 install ok installed mysql-common mysql-common 5.8+1.0.2 install ok installed ncbi-blast+ ncbi-blast+ 2.6.0-1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.6.0-1 install ok installed ncbi-data ncbi-data 6.1.20170106-2 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed netbase netbase 5.4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.11-1 install ok installed openmpi-bin openmpi-bin 2.0.2-2 install ok installed openmpi-common openmpi-common 2.0.2-2 install ok installed openssl openssl 1.1.0f-3+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl perl 5.24.1-3+deb9u4 install ok installed perl-base perl-base 5.24.1-3+deb9u4 install ok installed perl-doc perl-doc 5.24.1-3+deb9u4 deinstall ok config-files perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u4 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed perl-tk perl-tk 1:804.033-1+b3 install ok installed phylip phylip 1:3.696+dfsg-5 install ok installed phyml phyml 3:3.2.0+dfsg-7+b1 install ok installed pinentry-curses pinentry-curses 1.0.0-2 install ok installed poa poa 2.0+20060928-4+b1 install ok installed poppler-data poppler-data 0.4.7-8 install ok installed prank prank 0.0.150803-2 install ok installed primer3 primer3 2.3.7-3 install ok installed probalign probalign 1.4-5 install ok installed probcons probcons 1.12-11 install ok installed procps procps 2:3.3.12-3+deb9u1 install ok installed proda proda 1.0-10 install ok installed publicsuffix publicsuffix 20181003.1334-0+deb9u1 install ok installed python python 2.7.13-2 install ok installed python-minimal python-minimal 2.7.13-2 install ok installed python2.7 python2.7 2.7.13-2+deb9u3 install ok installed python2.7-minimal python2.7-minimal 2.7.13-2+deb9u3 install ok installed rake rake 10.5.0-2 install ok installed raxml raxml 8.2.9+dfsg-1+b1 install ok installed readline-common readline-common 7.0-3 install ok installed rename rename 0.20-4 install ok installed ruby ruby 1:2.3.3 install ok installed ruby-did-you-mean ruby-did-you-mean 1.0.0-2 install ok installed ruby-minitest ruby-minitest 5.9.0-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 0.3.0-1 install ok installed ruby-test-unit ruby-test-unit 3.1.7-2 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed ruby2.3 ruby2.3 2.3.3-1+deb9u2 install ok installed rubygems-integration rubygems-integration 1.11 install ok installed samtools samtools 1.3.1-3 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.8-1+deb9u1 install ok installed sim4 sim4 0.0.20121010-4 install ok installed sqlite3 sqlite3 3.16.2-5+deb9u1 install ok installed ssl-cert ssl-cert 1.0.39 install ok installed startpar startpar 0.59-3.1 install ok installed systemd systemd 232-25+deb9u6 install ok installed systemd-sysv systemd-sysv 232-25+deb9u6 install ok installed sysv-rc sysv-rc 2.88dsf-59.9 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed t-coffee t-coffee 11.00.8cbe486-5 install ok installed tar tar 1.29b-1.1 install ok installed tigr-glimmer tigr-glimmer 3.02b-1 install ok installed tm-align tm-align 20160521+dfsg-2 install ok installed tzdata tzdata 2018g-0+deb9u1 install ok installed ucf ucf 3.0036 install ok installed udev udev 232-25+deb9u6 install ok installed unzip unzip 6.0-21 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed wise wise 2.4.1-19 install ok installed wise-data wise-data 2.4.1-19 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2+b1 install ok installed xml-core xml-core 0.17 install ok installed xz-utils xz-utils 5.2.2-1.2+b1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 3m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m18.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', '-ac', '--ignore-obsolete'] 3m25.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', '-ac', '--ignore-obsolete'] 3m25.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m25.4s DUMP: 0.15.1 3m25.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m25.4s INFO: Running adequate version 0.15.1 now. 3m25.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'gbrowse-calign'] 3m25.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'gbrowse-calign'] 3m25.5s INFO: Running scripts pre_remove 3m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_exceptions'] 3m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/pre_remove_exceptions'] 3m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', 'remove', 'libjbig2dec0:amd64', 'libgssapi-krb5-2:amd64', 'libxtables12:amd64', 'libsigsegv2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'libelf1:amd64', 'emboss', 'libdbus-1-3:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libbio-graphics-perl', 'libole-storage-lite-perl', 'libmro-compat-perl', 'unzip', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libmodule-load-conditional-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'libmath-spline-perl', 'libxml-sax-perl', 'dialign-tx', 'libcgi-session-perl', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'libdrm2:amd64', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libhwloc5:amd64', 'libxml-dom-perl', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'mafft', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'gawk', 'libmoox-handlesvia-perl', 'libfile-slurp-perl', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'pinentry-curses', 'libruby2.1:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'xz-utils', 'libossp-uuid16:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libcupsimage2:amd64', 'zip', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libace-perl', 'libhpdf-2.2.1', 'libperl5.24:amd64', 'libb-hooks-op-check-perl', 'hyphy-common', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'ruby-minitest', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libopenjp2-7:amd64', 'libcairo2:amd64', 'perl-doc', 'lynx-common', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libev-perl', 'proda', 'bedtools', 'primer3', 'libcpan-changes-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libunicode-utf8-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libstaden-read1', 'beignet-opencl-icd:amd64', 'libmultidimensional-perl', 'libxml-libxslt-perl', 'perl-modules-5.24', 'med-config', 'libgd-svg-perl', 'fonts-liberation', 'libkrb5support0:amd64', 'libwebp6:amd64', 'libprocps3:amd64', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libjs-jquery', 'libfile-listing-perl', 'libxml-perl', 'libheap-perl', 'mummer', 'libbio-asn1-entrezgene-perl', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'ocl-icd-libopencl1:amd64', 'libguard-perl', 'gbrowse', 'ruby-power-assert', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'rake', 'libpsm-infinipath1', 'publicsuffix', 'fonts-droid-fallback', 'libyaml-libyaml-perl', 'libcrypt-random-seed-perl', 'libsoftware-license-perl', 'dbus', 'libgomp1:amd64', 'libthai0:amd64', 'openmpi-common', 'hmmer', 'libann0', 'libmagic1:amd64', 'libnl-route-3-200:amd64', 'libwww-perl', 'ncbi-blast+-legacy', 'libmath-derivative-perl', 'libxml-sax-base-perl', 'poppler-data', 'libpng16-16:amd64', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'openssl', 'libanyevent-http-perl', 'fontconfig-config', 'libssl1.0.2:amd64', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libmysqlclient18:amd64', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'libtypes-serialiser-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'ruby2.3', 'libgraphviz-perl', 'libmath-random-isaac-perl', 'libalgorithm-munkres-perl', 'libxdot4', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'libicu57:amd64', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libgvpr2', 'libisccfg-export90', 'phyml', 'gnupg', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'gnupg-agent', 'libapache2-mod-perl2', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'libfabric1', 'libjcode-pm-perl', 'libnl-3-200:amd64', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libexpat1:amd64', 'libxau6:amd64', 'iproute2', 'libdivsufsort3:amd64', 'krb5-locales', 'exonerate', 'libdns-export162', 'libgts-0.7-5:amd64', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libnuma1:amd64', 'libcommon-sense-perl', 'libparams-util-perl', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libpath-tiny-perl', 'menu', 'fonts-noto-mono', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libgts-bin', 'libcurl3-gnutls:amd64', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libgs9:amd64', 'libbsd0:amd64', 'libanyevent-perl', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libmagic-mgc', 'apache2-utils', 'libio-socket-ssl-perl', 'libjs-prototype', 'libfont-afm-perl', 'libidn2-0:amd64', 'libdevel-lexalias-perl', 'libruby2.3:amd64', 'libjs-scriptaculous', 'libtype-tiny-xs-perl', 'emboss-lib', 'libpod-readme-perl', 'libsub-exporter-perl', 'isc-dhcp-common', 'librdmacm1', 'libio-sessiondata-perl', 'libparams-validate-perl', 'sgml-base', 'ruby-did-you-mean', 'libisc-export160', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'liblua5.2-0:amd64', 'libhttp-message-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libnghttp2-14:amd64', 'libgnutls-deb0-28:amd64', 'libbio-scf-perl', 'perl-openssl-defaults:amd64', 'mime-support', 'libmpfr4:amd64', 'libgetopt-long-descriptive-perl', 'phylip', 'ncbi-data', 'libharfbuzz0b:amd64', 'libsm6:amd64', 'perl-tk', 'libbit-vector-perl', 'libunistring0:amd64', 't-coffee', 'libpython-stdlib:amd64', 'ucf', 'ruby-test-unit', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libmariadbclient18:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libsub-identify-perl', 'netbase', 'libjson-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libvariable-magic-perl', 'libpod-markdown-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'libxt6:amd64', 'kalign', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libnamespace-autoclean-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'libstaden-read11:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libfile-slurp-tiny-perl', 'libindirect-perl', 'libxml-regexp-perl', 'samtools', 'libxtables10', 'probalign', 'libio-pty-perl', 'libpathplan4', 'sqlite3', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libibverbs1', 'libgvc6', 'openmpi-bin', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libopenmpi2:amd64', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libpng12-0:amd64', 'libxml-sax-expat-perl', 'libssh2-1:amd64', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'fonts-lato', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libasync-interrupt-perl', 'libterm-readkey-perl', 'apache2-bin', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libpackage-stash-perl', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libx11-6:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpixman-1-0:amd64', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libsvg-perl', 'libparams-classify-perl', 'libpsl5:amd64', 'libhts1:amd64', 'blends-common', 'libxml-twig-perl', 'libxdmcp6:amd64', 'blast2', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libmath-random-isaac-xs-perl', 'libxml-parser-perl', 'libregexp-common-perl', 'libfreetype6:amd64', 'hyphy-mpi', 'librtmp1:amd64', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libbsd-resource-perl', 'libbytes-random-secure-perl', 'perl', 'libatm1:amd64', 'libhttp-daemon-perl', 'libbio-coordinate-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'libxrender1:amd64', 'libjbig0:amd64', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'raxml', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'ruby-net-telnet', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'bzip2', 'perl-modules', 'libjson-xs-perl', 'libxfixes3:amd64', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libstring-approx-perl', 'libsub-name-perl', 'libmnl0:amd64', 'libdevel-caller-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'fsa', 'libhmsbeagle1v5', 'libdata-perl-perl', 'libxml-writer-perl', 'libcdt5', 'libvm-ec2-perl', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'gbrowse-calign'] 3m45.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'perl-modules' is not installed, so not removed Package 'fonts-droid' is not installed, so not removed The following packages were automatically installed and are no longer required: dirmngr gnupg-l10n libassuan0 libffi6 libgmp10 libgnutls30 libhogweed4 libksba8 libldap-2.4-2 libldap-common libnettle6 libnpth0 libp11-kit0 libreadline7 libsasl2-2 libsasl2-modules libsasl2-modules-db libsqlite3-0 libssl1.1 libtasn1-6 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: amap-align apache2 apache2-bin apache2-data apache2-utils bedtools beignet-opencl-icd bioperl bioperl-run blast2 blends-common bowtie bwa bzip2 ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fsa gawk gbrowse gbrowse-calign ghostscript gnupg gnupg-agent graphviz gsfonts hmmer hyphy-common hyphy-mpi ifupdown infernal iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libasync-interrupt-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libbytes-random-secure-perl libcache-cache-perl libcairo2 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-changes-perl libcpan-meta-perl libcrypt-random-seed-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-optlist-perl libdata-perl-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdns-export100 libdns-export162 libdrm-intel1 libdrm2 libelf1 libencode-locale-perl liberror-perl libev-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-perl libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgetopt-long-descriptive-perl libgfortran3 libglib2.0-0 libglib2.0-data libgnutls-deb0-28 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhmsbeagle1v5 libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu57 libidn2-0 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadbclient18 libmath-derivative-perl libmath-random-isaac-perl libmath-random-isaac-xs-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmnl0 libmodule-build-perl libmodule-implementation-perl libmodule-load-conditional-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmoox-handlesvia-perl libmpfr4 libmro-compat-perl libmultidimensional-perl libmysqlclient18 libnamespace-autoclean-perl libnamespace-clean-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi2 libossp-uuid-perl libossp-uuid16 libpackage-constants-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpath-tiny-perl libpathplan4 libpciaccess0 libperl5.24 libpixman-1-0 libpng12-0 libpng16-16 libpod-latex-perl libpod-markdown-perl libpod-readme-perl libpostscript-perl libpq5 libprocps3 libpsl5 libpsm-infinipath1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librdmacm1 libregexp-common-perl librole-tiny-perl librtmp1 libruby2.1 libruby2.3 libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libssh2-1 libssl1.0.0 libssl1.0.2 libstaden-read1 libstaden-read11 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libterm-readkey-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libunicode-map-perl libunicode-utf8-perl libunistring0 liburi-perl libvariable-magic-perl libvm-ec2-perl libvpx1 libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libxtables12 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-common lynx-cur mafft maq med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-doc perl-modules-5.24 perl-openssl-defaults perl-tk phylip phyml pinentry-curses poa poppler-data prank primer3 probalign probcons proda publicsuffix python python-minimal python2.7 python2.7-minimal rake raxml rename ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.1 ruby2.3 rubygems-integration samtools sgml-base shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xdg-user-dirs xml-core xz-utils zip 0 upgraded, 0 newly installed, 475 to remove and 0 not upgraded. After this operation, 1201 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34921 files and directories currently installed.) Removing amap-align (2.2-6) ... Removing gbrowse-calign (2.56+dfsg-2) ... Removing gbrowse (2.56+dfsg-2) ... Conf gbrowse disabled. apache2_invoke prerm: Disable configuration gbrowse Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of reload. Removing apache2 (2.4.25-3+deb9u6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing libapache2-reload-perl (0.13-1) ... Removing libapache-dbi-perl (1.12-1) ... Removing libapache2-mod-perl2 (2.0.10-2) ... Removing apache2-bin (2.4.25-3+deb9u6) ... dpkg: warning: while removing apache2-bin, directory '/var/lib/apache2' not empty so not removed Removing apache2-data (2.4.25-3+deb9u6) ... Removing apache2-utils (2.4.25-3+deb9u6) ... Removing bedtools (2.26.0+dfsg-3) ... Removing phyml (3:3.2.0+dfsg-7+b1) ... Removing libhmsbeagle1v5 (2.1.2+20160831-5) ... Removing beignet-opencl-icd:amd64 (1.3.0-4) ... Removing libbio-coordinate-perl (1.7.1-1) ... Removing libbio-graphics-perl (2.40-1) ... Removing bioperl-run (1.7.1-3) ... Removing blast2 (1:2.6.0-1) ... Removing med-config (3.0.1) ... Removing blends-common (0.6.96) ... Removing bowtie (1.1.2-6) ... Removing bwa (0.7.15-2) ... Removing bzip2 (1.0.6-8.1) ... Removing ruby (1:2.3.3) ... Removing ruby2.3 (2.3.3-1+deb9u2) ... Removing libruby2.3:amd64 (2.3.3-1+deb9u2) ... Removing libvm-ec2-perl (1.28-2) ... Removing libxml-simple-perl (2.22-1) ... Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing clustalo (1.2.4-1) ... Removing clustalw (2.1+lgpl-5) ... Removing dbus (1.10.26-0+deb9u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing dialign (2.2.1-8) ... Removing dialign-tx (1.0.2-9) ... Removing dialign-tx-data (1.0.2-9) ... Removing emboss (6.6.0+dfsg-6) ... Removing emboss-data (6.6.0+dfsg-6) ... Removing emboss-lib (6.6.0+dfsg-6) ... Removing fsa (1.15.9+dfsg-3) ... Removing exonerate (2.4.0-2) ... Removing file (1:5.30-1+deb9u2) ... Removing libgraphviz-perl (2.22-1) ... Removing graphviz (2.38.0-17) ... Removing libgvc6 (2.38.0-17) ... Removing libpangocairo-1.0-0:amd64 (1.40.5-1) ... Removing libpangoft2-1.0-0:amd64 (1.40.5-1) ... Removing libpango-1.0-0:amd64 (1.40.5-1) ... Removing fontconfig (2.11.0-6.7+b1) ... Removing perl-tk (1:804.033-1+b3) ... Removing libxft2:amd64 (2.3.2-1+b2) ... Removing libgd-svg-perl (0.33-1) ... Removing libgd-perl (2.53-3) ... Removing libgd3:amd64 (2.2.4-2+deb9u3) ... Removing fonts-dejavu-core (2.37-1) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing fonts-lato (2.0-1) ... Removing fonts-noto-mono (20161116-1) ... Removing mummer (3.23+dfsg-2) ... Removing gawk (1:4.1.4+dfsg-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing ghostscript (9.20~dfsg-3.2+deb9u5) ... Removing gnupg (2.1.18-8~deb9u3) ... Removing gnupg-agent (2.1.18-8~deb9u3) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... Removing hmmer (3.1b2+dfsg-5) ... Removing hyphy-mpi (2.2.7+dfsg-1+b2) ... Removing hyphy-common (2.2.7+dfsg-1) ... Removing ifupdown (0.8.19) ... Removing infernal (1.1.2-1) ... Removing isc-dhcp-client (4.3.5-3+deb9u1) ... Removing iproute2 (4.9.0-1+deb9u1) ... Removing isc-dhcp-common (4.3.5-3+deb9u1) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-3) ... Removing krb5-locales (1.15-1+deb9u1) ... Removing libace-perl (1.92-4+b1) ... Removing libsoftware-license-perl (0.103012-1) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.32-1) ... Removing libalgorithm-c3-perl (0.10-1) ... Removing libalgorithm-diff-xs-perl (0.04-4+b2) ... Removing libalgorithm-diff-perl (1.19.03-1) ... Removing libalgorithm-munkres-perl (0.08-3) ... Removing libann0 (1.1.2+doc-6) ... Removing libanyevent-cachedns-perl (0.08-2) ... Removing libanyevent-http-perl (2.23-1) ... Removing libanyevent-perl (7.130-2) ... Removing libaprutil1-ldap:amd64 (1.5.4-3) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Removing libaprutil1:amd64 (1.5.4-3) ... Removing libapr1:amd64 (1.5.2-5) ... Removing libarchive-extract-perl (0.80-1) ... Removing libargtable2-0 (13-1) ... Removing libarray-compare-perl (3.0.0-1) ... Removing libasync-interrupt-perl (1.21-1+b2) ... Removing libatm1:amd64 (1:2.5.1-2) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libgs9:amd64 (9.20~dfsg-3.2+deb9u5) ... Removing libcupsfilters1:amd64 (1.11.6-3) ... Removing libpod-readme-perl (1.1.2-1) ... Removing libnamespace-autoclean-perl (0.28-1) ... Removing libnamespace-clean-perl (0.27-1) ... Removing libb-hooks-endofscope-perl (0.21-1) ... Removing libmultidimensional-perl (0.012-1+b1) ... Removing libbareword-filehandles-perl (0.004-1+b1) ... Removing libb-hooks-op-check-perl (0.19-3+b1) ... Removing libbio-asn1-entrezgene-perl (1.720-1) ... Removing libbio-perl-run-perl (1.7.1-3) ... Removing libbio-scf-perl (1.03-3) ... Removing libdate-calc-xs-perl (6.4-1+b2) ... Removing libdate-calc-perl (6.4-1) ... Removing libbit-vector-perl (7.4-1+b2) ... Removing libbsd-resource-perl (1.2910-1+b1) ... Removing lynx-cur (2.8.9dev11-1) ... Removing lynx (2.8.9dev11-1) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libcrypt-ssleay-perl (0.73.04-2) ... Removing libbytes-random-secure-perl (0.28-1) ... Removing libcache-cache-perl (1.08-2) ... Removing libcairo2:amd64 (1.14.8-1) ... Removing libcarp-clan-perl (6.06-1) ... Removing libgvpr2 (2.38.0-17) ... Removing libcgraph6 (2.38.0-17) ... Removing libcdt5 (2.38.0-17) ... Removing libcgi-fast-perl (1:2.12-1) ... Removing libcgi-session-perl (4.48-3) ... Removing libcgi-pm-perl (4.35-1) ... Removing libclass-c3-xs-perl (0.14-1+b1) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.20-1) ... Removing libclass-inspector-perl (1.31-1) ... Removing libmoox-handlesvia-perl (0.001008-2) ... Removing libmoo-perl (2.002005-1) ... Removing libdata-perl-perl (0.002009-1) ... Removing librole-tiny-perl (2.000005-1) ... Removing libclass-method-modifiers-perl (2.12-1) ... Removing libclass-xsaccessor-perl (1.19-2+b7) ... Removing libclone-perl (0.38-2+b1) ... Removing libjson-xs-perl (3.030-1) ... Removing libtypes-serialiser-perl (1.0-1) ... Removing libev-perl (4.22-1+b1) ... Removing libcommon-sense-perl (3.74-2) ... Removing libconvert-binary-c-perl (0.78-1+b1) ... Removing libmime-tools-perl (5.508-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libcpan-changes-perl (0.400002-1) ... Removing libmodule-build-perl (0.422000-1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.150010-1) ... Removing libcrypt-random-seed-perl (0.03-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-2) ... Removing libcupsimage2:amd64 (2.2.1-8+deb9u2) ... Removing libstaden-read1 (1.13.7-1) ... Removing libstaden-read11:amd64 (1.14.8-2) ... Removing libgetopt-long-descriptive-perl (0.100-1) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.110-1) ... Removing libdate-manip-perl (6.57-1) ... Removing libthai0:amd64 (0.1.26-1) ... Removing libdatrie1:amd64 (0.2.10-4+b1) ... Removing libdbd-mysql-perl (4.041-2) ... Removing libdbd-pg-perl (3.5.3-1+b2) ... Removing libdbd-sqlite3-perl (1.54-1) ... Removing libdbi-perl (1.636-1+b1) ... Removing libdevel-lexalias-perl (0.05-1+b4) ... Removing libdevel-caller-perl (2.06-1+b4) ... Removing libdevel-globaldestruction-perl (0.14-1) ... Removing libdevel-symdump-perl (2.17-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libdivsufsort3:amd64 (2.0.1-2) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export162 (1:9.10.3.dfsg.P4-12.3+deb9u4) ... Removing libdrm-intel1:amd64 (2.4.74-1) ... Removing libdrm2:amd64 (2.4.74-1) ... Removing libelf1:amd64 (0.168-1) ... Removing liberror-perl (0.17024-1) ... Removing ncbi-blast+-legacy (2.6.0-1) ... Removing ncbi-blast+ (2.6.0-1) ... Removing python (2.7.13-2) ... Removing python2.7 (2.7.13-2+deb9u3) ... Removing libpython-stdlib:amd64 (2.7.13-2) ... Removing libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Removing libtype-tiny-perl (1.000005-1) ... Removing libsvg-graph-perl (0.02-2) ... Removing libstatistics-descriptive-perl (3.0612-1) ... Removing liblist-moreutils-perl (0.416-1+b1) ... Removing libexporter-tiny-perl (0.042-1) ... Removing openmpi-bin (2.0.2-2) ... Removing libopenmpi2:amd64 (2.0.2-2) ... Removing libfabric1 (1.4.0-1) ... Removing libfcgi-perl (0.78-2) ... Removing libfile-slurp-perl (9999.19-6) ... Removing libtree-dagnode-perl (1.29-1) ... Removing libfile-slurp-tiny-perl (0.003-1) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing libharfbuzz0b:amd64 (1.4.2-1) ... Removing libfreezethaw-perl (0.5001-1) ... Removing rename (0.20-4) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing mafft (7.307-1) ... Removing tm-align (20160521+dfsg-2) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing wise (2.4.1-19) ... Removing shared-mime-info (1.8-1+deb9u1) ... Removing libglib2.0-data (2.50.3-2) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libgraph-perl (1:0.96-2) ... Removing libgraphite2-3:amd64 (1.3.10-1) ... Removing libgs9-common (9.20~dfsg-3.2+deb9u5) ... Removing libpq5:amd64 (9.6.10-0+deb9u1) ... Removing libgts-bin (0.7.6+darcs121130-4) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libguard-perl (1.023-1+b2) ... Removing libheap-perl (0.80-3) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libhpdf-2.2.1 (2.2.1-1.1+b1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.13-1) ... Removing samtools (1.3.1-3) ... Removing libhts1:amd64 (1.3.2-2) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libhwloc-plugins (1.11.5-1) ... Removing libhwloc5:amd64 (1.11.5-1) ... Removing librdmacm1 (1.1.0-2) ... Removing libibverbs1 (1.2.1-2) ... Removing libsm6:amd64 (2:1.2.2-1+b3) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libxml-libxslt-perl (1.95-1+b1) ... Removing libxslt1.1:amd64 (1.1.29-2.1) ... Removing libijs-0.35:amd64 (0.35-12) ... Removing libimport-into-perl (1.002005-1) ... Removing libindirect-perl (0.37-1+b1) ... Removing libipc-run-perl (0.94-1+deb9u1) ... Removing libio-pty-perl (1:1.08-1.1+b2) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libmailtools-perl (2.18-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libole-storage-lite-perl (0.19-1) ... Removing libio-stringy-perl (2.111-2) ... Removing libipc-sharelite-perl (0.17-4) ... Removing libisc-export160 (1:9.10.3.dfsg.P4-12.3+deb9u4) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libtiff5:amd64 (4.0.8-2+deb9u2) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjbig2dec0:amd64 (0.13-4.1) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2) ... Removing libjs-jquery (3.1.1-2) ... Removing libjs-scriptaculous (1.9.0-2) ... Removing libjs-prototype (1.7.1-3) ... Removing libjson-perl (2.90-1) ... Removing liblcms2-2:amd64 (2.8-4+deb9u1) ... Removing liblexical-sealrequirehints-perl (0.010-1+b1) ... Removing libterm-ui-perl (0.46-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing libltdl7:amd64 (2.4.6-2) ... Removing liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Removing liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Removing libmagic1:amd64 (1:5.30-1+deb9u2) ... Removing libmagic-mgc (1:5.30-1+deb9u2) ... Removing libmariadbclient18:amd64 (10.1.26-0+deb9u1) ... Removing libmath-spline-perl (0.02-1) ... Removing libmath-derivative-perl (0.04-2) ... Removing libmath-random-isaac-perl (1.003-1) ... Removing libmath-random-isaac-xs-perl (1.004-2+b2) ... Removing libmldbm-perl (2.05-2) ... Removing libmnl0:amd64 (1.0.4-2) ... Removing libparams-validate-perl (1.26-1) ... Removing libpackage-stash-perl (0.37-1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-load-conditional-perl (0.68-1) ... Removing libmodule-pluggable-perl (5.2-1) ... Removing libmodule-runtime-perl (0.014-2) ... Removing libmodule-signature-perl (0.81-1) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Removing libncbi6:amd64 (6.1.20170106-2) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libnl-route-3-200:amd64 (3.2.27-2) ... Removing libnl-3-200:amd64 (3.2.27-2) ... Removing libnuma1:amd64 (2.0.11-2.1) ... Removing libopenjp2-7:amd64 (2.1.2-1.1+deb9u2) ... Removing libossp-uuid-perl (1.6.2-1.5+b4) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Removing libpackage-constants-perl (0.06-1) ... Removing libpackage-stash-xs-perl (0.28-3+b1) ... Removing libpadwalker-perl (2.2-2+b1) ... Removing libpaper-utils (1.1.24+nmu5) ... Removing libpaper1:amd64 (1.1.24+nmu5) ... Removing libparams-classify-perl (0.013-6+b1) ... Removing libparams-util-perl (1.07-3+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967013+dfsg-1) ... Removing libpath-tiny-perl (0.100-1) ... Removing libpathplan4 (2.38.0-17) ... Removing libpciaccess0:amd64 (0.13.4-1+b2) ... Removing libpixman-1-0:amd64 (0.34.0-1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libpod-latex-perl (0.61-2) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-markdown-perl (3.005000-1) ... Removing libpostscript-perl (0.06-2) ... Removing libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Removing libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Removing python-minimal (2.7.13-2) ... Removing python2.7-minimal (2.7.13-2+deb9u3) ... Removing libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing libregexp-common-perl (2016060801-1) ... Removing libset-scalar-perl (1.29-2) ... Removing libsigsegv2:amd64 (2.10-5) ... Removing libsort-naturally-perl (1.03-1) ... Removing libssl1.0.2:amd64 (1.0.2l-2+deb9u3) ... Removing libstrictures-perl (2.000003-1) ... Removing libstring-approx-perl (3.27-1+b4) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-identify-perl (0.12-2+b1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.21-1) ... Removing libsvg-perl (2.64-1) ... Removing libtask-weaken-perl (1.04-1) ... Removing libterm-readkey-perl (2.37-1) ... Removing libtext-soundex-perl (3.4-1+b4) ... Removing libtext-template-perl (1.46-1) ... Removing libthai-data (0.1.26-1) ... Removing libtie-ixhash-perl (1.23-2) ... Removing libtry-tiny-perl (0.28-1) ... Removing libtype-tiny-xs-perl (0.012-1+b2) ... Removing libunicode-map-perl (0.112-11+b3) ... Removing libunicode-utf8-perl (0.60-1+b3) ... Removing libvariable-magic-perl (0.61-1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libwebp6:amd64 (0.5.2-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxcb-shm0:amd64 (1.12-1) ... Removing libxcb-render0:amd64 (1.12-1) ... Removing libxdot4 (2.38.0-17) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxml-dom-xpath-perl (0.14-2) ... Removing libxml-dom-perl (1.44-2) ... Removing libxml-sax-writer-perl (0.56-1) ... Removing libxml-filter-buffertext-perl (1.01-5) ... Removing libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-perl (0.08-2) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml-twig-perl (1:3.50-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpath-perl (1.40-1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libxtables12:amd64 (1.6.0+snapshot20161117-6) ... Removing libyaml-libyaml-perl (0.63-2) ... Removing libyaml-perl (1.21-1) ... Removing lynx-common (2.8.9dev11-1) ... Removing maq (0.7.1-7) ... Removing menu (2.1.47+b1) ... Removing mime-support (3.60) ... Removing muscle (1:3.8.31+dfsg-2) ... Removing mustang (3.2.3-1) ... Removing mysql-common (5.8+1.0.2) ... Removing ncbi-data (6.1.20170106-2) ... Removing ocl-icd-libopencl1:amd64 (2.2.11-1) ... Removing openmpi-common (2.0.2-2) ... Removing ssl-cert (1.0.39) ... Removing perl-doc (5.24.1-3+deb9u4) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing phylip (1:3.696+dfsg-5) ... Removing pinentry-curses (1.0.0-2) ... Removing poa (2.0+20060928-4+b1) ... Removing poppler-data (0.4.7-8) ... Removing prank (0.0.150803-2) ... Removing primer3 (2.3.7-3) ... Removing probalign (1.4-5) ... Removing probcons (1.12-11) ... Removing proda (1.0-10) ... Removing publicsuffix (20181003.1334-0+deb9u1) ... Removing raxml (8.2.9+dfsg-1+b1) ... Removing ruby-did-you-mean (1.0.0-2) ... Removing ruby-minitest (5.9.0-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.1.7-2) ... Removing ruby-power-assert (0.3.0-1) ... Removing xml-core (0.17) ... Removing sgml-base (1.29) ... Removing sim4 (0.0.20121010-4) ... Removing sqlite3 (3.16.2-5+deb9u1) ... Removing t-coffee (11.00.8cbe486-5) ... Removing tigr-glimmer (3.02b-1) ... Removing unzip (6.0-21) ... Removing wise-data (2.4.1-19) ... Removing x11-common (1:7.7+19) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.15-2+b1) ... Removing xz-utils (5.2.2-1.2+b1) ... Removing zip (3.0-11+b1) ... Removing bioperl (1.7.1-2) ... Removing rake (10.5.0-2) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing rubygems-integration (1.11) ... Removing libxml-parser-perl (2.44-2+b1) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing fonts-liberation (1:1.07.4-2) ... Removing libcups2:amd64 (2.2.1-8+deb9u2) ... Removing libavahi-client3:amd64 (0.6.32-2) ... Removing libavahi-common3:amd64 (0.6.32-2) ... Removing libavahi-common-data:amd64 (0.6.32-2) ... Removing libbio-perl-perl (1.7.1-2) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1) ... Removing libcurl3-gnutls:amd64 (7.52.1-5+deb9u8) ... Removing libdata-stag-perl (0.14-2) ... Removing libdbus-1-3:amd64 (1.10.26-0+deb9u1) ... Removing libexpat1:amd64 (2.2.0-2+deb9u1) ... Removing libfreetype6:amd64 (2.6.3-3.2) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing libglib2.0-0:amd64 (2.50.3-2) ... Removing libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Removing libicu57:amd64 (57.1-6+deb9u2) ... Removing libpsl5:amd64 (0.17.0-3) ... Removing libidn2-0:amd64 (0.16-1+deb9u1) ... Removing libio-string-perl (1.08-3) ... Removing libkrb5-3:amd64 (1.15-1+deb9u1) ... Removing libk5crypto3:amd64 (1.15-1+deb9u1) ... Removing libkrb5support0:amd64 (1.15-1+deb9u1) ... Removing libkeyutils1:amd64 (1.5.9-9) ... Removing libnghttp2-14:amd64 (1.18.1-1) ... Removing libpng16-16:amd64 (1.6.28-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Removing libssh2-1:amd64 (1.7.0-1) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libx11-data (2:1.6.4-3+deb9u1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libyaml-0-2:amd64 (0.1.7-2) ... Removing ucf (3.0036) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libio-socket-ssl-perl (2.044-1) ... Removing libnet-ssleay-perl (1.80-1) ... Removing perl-openssl-defaults:amd64 (3) ... Removing libwww-perl (6.15-1) ... Removing ca-certificates (20161130+nmu1+deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-2) ... Removing libhtml-parser-perl (3.72-3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.01-1) ... Removing libnet-http-perl (6.12-1) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.4) ... Removing openssl (1.1.0f-3+deb9u2) ... Removing libhttp-message-perl (6.11-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.71-1) ... Removing perl (5.24.1-3+deb9u4) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u4) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing perl-modules-5.24 (5.24.1-3+deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u3) ... 3m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', 'remove', 'libjbig2dec0:amd64', 'libgssapi-krb5-2:amd64', 'libxtables12:amd64', 'libsigsegv2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'libelf1:amd64', 'emboss', 'libdbus-1-3:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libbio-graphics-perl', 'libole-storage-lite-perl', 'libmro-compat-perl', 'unzip', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libmodule-load-conditional-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'libmath-spline-perl', 'libxml-sax-perl', 'dialign-tx', 'libcgi-session-perl', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'libdrm2:amd64', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libhwloc5:amd64', 'libxml-dom-perl', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'mafft', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'gawk', 'libmoox-handlesvia-perl', 'libfile-slurp-perl', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'pinentry-curses', 'libruby2.1:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'xz-utils', 'libossp-uuid16:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libcupsimage2:amd64', 'zip', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libace-perl', 'libhpdf-2.2.1', 'libperl5.24:amd64', 'libb-hooks-op-check-perl', 'hyphy-common', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'ruby-minitest', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libopenjp2-7:amd64', 'libcairo2:amd64', 'perl-doc', 'lynx-common', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libev-perl', 'proda', 'bedtools', 'primer3', 'libcpan-changes-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libunicode-utf8-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libstaden-read1', 'beignet-opencl-icd:amd64', 'libmultidimensional-perl', 'libxml-libxslt-perl', 'perl-modules-5.24', 'med-config', 'libgd-svg-perl', 'fonts-liberation', 'libkrb5support0:amd64', 'libwebp6:amd64', 'libprocps3:amd64', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libjs-jquery', 'libfile-listing-perl', 'libxml-perl', 'libheap-perl', 'mummer', 'libbio-asn1-entrezgene-perl', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'ocl-icd-libopencl1:amd64', 'libguard-perl', 'gbrowse', 'ruby-power-assert', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'rake', 'libpsm-infinipath1', 'publicsuffix', 'fonts-droid-fallback', 'libyaml-libyaml-perl', 'libcrypt-random-seed-perl', 'libsoftware-license-perl', 'dbus', 'libgomp1:amd64', 'libthai0:amd64', 'openmpi-common', 'hmmer', 'libann0', 'libmagic1:amd64', 'libnl-route-3-200:amd64', 'libwww-perl', 'ncbi-blast+-legacy', 'libmath-derivative-perl', 'libxml-sax-base-perl', 'poppler-data', 'libpng16-16:amd64', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'openssl', 'libanyevent-http-perl', 'fontconfig-config', 'libssl1.0.2:amd64', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libmysqlclient18:amd64', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'libtypes-serialiser-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'ruby2.3', 'libgraphviz-perl', 'libmath-random-isaac-perl', 'libalgorithm-munkres-perl', 'libxdot4', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'libicu57:amd64', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libgvpr2', 'libisccfg-export90', 'phyml', 'gnupg', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'gnupg-agent', 'libapache2-mod-perl2', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'libfabric1', 'libjcode-pm-perl', 'libnl-3-200:amd64', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libexpat1:amd64', 'libxau6:amd64', 'iproute2', 'libdivsufsort3:amd64', 'krb5-locales', 'exonerate', 'libdns-export162', 'libgts-0.7-5:amd64', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libnuma1:amd64', 'libcommon-sense-perl', 'libparams-util-perl', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libpath-tiny-perl', 'menu', 'fonts-noto-mono', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libgts-bin', 'libcurl3-gnutls:amd64', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libgs9:amd64', 'libbsd0:amd64', 'libanyevent-perl', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libmagic-mgc', 'apache2-utils', 'libio-socket-ssl-perl', 'libjs-prototype', 'libfont-afm-perl', 'libidn2-0:amd64', 'libdevel-lexalias-perl', 'libruby2.3:amd64', 'libjs-scriptaculous', 'libtype-tiny-xs-perl', 'emboss-lib', 'libpod-readme-perl', 'libsub-exporter-perl', 'isc-dhcp-common', 'librdmacm1', 'libio-sessiondata-perl', 'libparams-validate-perl', 'sgml-base', 'ruby-did-you-mean', 'libisc-export160', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'liblua5.2-0:amd64', 'libhttp-message-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libnghttp2-14:amd64', 'libgnutls-deb0-28:amd64', 'libbio-scf-perl', 'perl-openssl-defaults:amd64', 'mime-support', 'libmpfr4:amd64', 'libgetopt-long-descriptive-perl', 'phylip', 'ncbi-data', 'libharfbuzz0b:amd64', 'libsm6:amd64', 'perl-tk', 'libbit-vector-perl', 'libunistring0:amd64', 't-coffee', 'libpython-stdlib:amd64', 'ucf', 'ruby-test-unit', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libmariadbclient18:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libsub-identify-perl', 'netbase', 'libjson-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libvariable-magic-perl', 'libpod-markdown-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'libxt6:amd64', 'kalign', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libnamespace-autoclean-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'libstaden-read11:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libfile-slurp-tiny-perl', 'libindirect-perl', 'libxml-regexp-perl', 'samtools', 'libxtables10', 'probalign', 'libio-pty-perl', 'libpathplan4', 'sqlite3', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libibverbs1', 'libgvc6', 'openmpi-bin', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libopenmpi2:amd64', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libpng12-0:amd64', 'libxml-sax-expat-perl', 'libssh2-1:amd64', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'fonts-lato', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libasync-interrupt-perl', 'libterm-readkey-perl', 'apache2-bin', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libpackage-stash-perl', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libx11-6:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpixman-1-0:amd64', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libsvg-perl', 'libparams-classify-perl', 'libpsl5:amd64', 'libhts1:amd64', 'blends-common', 'libxml-twig-perl', 'libxdmcp6:amd64', 'blast2', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libmath-random-isaac-xs-perl', 'libxml-parser-perl', 'libregexp-common-perl', 'libfreetype6:amd64', 'hyphy-mpi', 'librtmp1:amd64', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libbsd-resource-perl', 'libbytes-random-secure-perl', 'perl', 'libatm1:amd64', 'libhttp-daemon-perl', 'libbio-coordinate-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'libxrender1:amd64', 'libjbig0:amd64', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'raxml', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'ruby-net-telnet', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'bzip2', 'perl-modules', 'libjson-xs-perl', 'libxfixes3:amd64', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libstring-approx-perl', 'libsub-name-perl', 'libmnl0:amd64', 'libdevel-caller-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'fsa', 'libhmsbeagle1v5', 'libdata-perl-perl', 'libxml-writer-perl', 'libcdt5', 'libvm-ec2-perl', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'gbrowse-calign'] 3m45.1s INFO: Running scripts post_remove 3m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_remove_exceptions'] 3m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_remove_exceptions'] 3m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg', '--purge', 'libjbig2dec0:amd64', 'libgssapi-krb5-2:amd64', 'libxtables12:amd64', 'libsigsegv2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'libelf1:amd64', 'emboss', 'libdbus-1-3:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libbio-graphics-perl', 'libole-storage-lite-perl', 'libmro-compat-perl', 'unzip', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libmodule-load-conditional-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'libmath-spline-perl', 'libxml-sax-perl', 'dialign-tx', 'libcgi-session-perl', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'libdrm2:amd64', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libhwloc5:amd64', 'libxml-dom-perl', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'mafft', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'gawk', 'libmoox-handlesvia-perl', 'libfile-slurp-perl', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'pinentry-curses', 'libruby2.1:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'xz-utils', 'libossp-uuid16:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libcupsimage2:amd64', 'zip', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libace-perl', 'libhpdf-2.2.1', 'libperl5.24:amd64', 'libb-hooks-op-check-perl', 'hyphy-common', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'ruby-minitest', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libopenjp2-7:amd64', 'libcairo2:amd64', 'perl-doc', 'lynx-common', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libev-perl', 'proda', 'bedtools', 'primer3', 'libcpan-changes-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libunicode-utf8-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libstaden-read1', 'beignet-opencl-icd:amd64', 'libmultidimensional-perl', 'libxml-libxslt-perl', 'perl-modules-5.24', 'med-config', 'libgd-svg-perl', 'fonts-liberation', 'libkrb5support0:amd64', 'libwebp6:amd64', 'libprocps3:amd64', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libjs-jquery', 'libfile-listing-perl', 'libxml-perl', 'libheap-perl', 'mummer', 'libbio-asn1-entrezgene-perl', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'ocl-icd-libopencl1:amd64', 'libguard-perl', 'gbrowse', 'ruby-power-assert', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'rake', 'libpsm-infinipath1', 'publicsuffix', 'fonts-droid-fallback', 'libyaml-libyaml-perl', 'libcrypt-random-seed-perl', 'libsoftware-license-perl', 'dbus', 'libgomp1:amd64', 'libthai0:amd64', 'openmpi-common', 'hmmer', 'libann0', 'libmagic1:amd64', 'libnl-route-3-200:amd64', 'libwww-perl', 'ncbi-blast+-legacy', 'libmath-derivative-perl', 'libxml-sax-base-perl', 'poppler-data', 'libpng16-16:amd64', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'openssl', 'libanyevent-http-perl', 'fontconfig-config', 'libssl1.0.2:amd64', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libmysqlclient18:amd64', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'libtypes-serialiser-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'ruby2.3', 'libgraphviz-perl', 'libmath-random-isaac-perl', 'libalgorithm-munkres-perl', 'libxdot4', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'libicu57:amd64', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libgvpr2', 'libisccfg-export90', 'phyml', 'gnupg', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'gnupg-agent', 'libapache2-mod-perl2', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'libfabric1', 'libjcode-pm-perl', 'libnl-3-200:amd64', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libexpat1:amd64', 'libxau6:amd64', 'iproute2', 'libdivsufsort3:amd64', 'krb5-locales', 'exonerate', 'libdns-export162', 'libgts-0.7-5:amd64', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libnuma1:amd64', 'libcommon-sense-perl', 'libparams-util-perl', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libpath-tiny-perl', 'menu', 'fonts-noto-mono', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libgts-bin', 'libcurl3-gnutls:amd64', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libgs9:amd64', 'libbsd0:amd64', 'libanyevent-perl', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libmagic-mgc', 'apache2-utils', 'libio-socket-ssl-perl', 'libjs-prototype', 'libfont-afm-perl', 'libidn2-0:amd64', 'libdevel-lexalias-perl', 'libruby2.3:amd64', 'libjs-scriptaculous', 'libtype-tiny-xs-perl', 'emboss-lib', 'libpod-readme-perl', 'libsub-exporter-perl', 'isc-dhcp-common', 'librdmacm1', 'libio-sessiondata-perl', 'libparams-validate-perl', 'sgml-base', 'ruby-did-you-mean', 'libisc-export160', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'liblua5.2-0:amd64', 'libhttp-message-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libnghttp2-14:amd64', 'libgnutls-deb0-28:amd64', 'libbio-scf-perl', 'perl-openssl-defaults:amd64', 'mime-support', 'libmpfr4:amd64', 'libgetopt-long-descriptive-perl', 'phylip', 'ncbi-data', 'libharfbuzz0b:amd64', 'libsm6:amd64', 'perl-tk', 'libbit-vector-perl', 'libunistring0:amd64', 't-coffee', 'libpython-stdlib:amd64', 'ucf', 'ruby-test-unit', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libmariadbclient18:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libsub-identify-perl', 'netbase', 'libjson-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libvariable-magic-perl', 'libpod-markdown-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'libxt6:amd64', 'kalign', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libnamespace-autoclean-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'libstaden-read11:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libfile-slurp-tiny-perl', 'libindirect-perl', 'libxml-regexp-perl', 'samtools', 'libxtables10', 'probalign', 'libio-pty-perl', 'libpathplan4', 'sqlite3', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libibverbs1', 'libgvc6', 'openmpi-bin', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libopenmpi2:amd64', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libpng12-0:amd64', 'libxml-sax-expat-perl', 'libssh2-1:amd64', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'fonts-lato', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libasync-interrupt-perl', 'libterm-readkey-perl', 'apache2-bin', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libpackage-stash-perl', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libx11-6:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpixman-1-0:amd64', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libsvg-perl', 'libparams-classify-perl', 'libpsl5:amd64', 'libhts1:amd64', 'blends-common', 'libxml-twig-perl', 'libxdmcp6:amd64', 'blast2', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libmath-random-isaac-xs-perl', 'libxml-parser-perl', 'libregexp-common-perl', 'libfreetype6:amd64', 'hyphy-mpi', 'librtmp1:amd64', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libbsd-resource-perl', 'libbytes-random-secure-perl', 'perl', 'libatm1:amd64', 'libhttp-daemon-perl', 'libbio-coordinate-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'libxrender1:amd64', 'libjbig0:amd64', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'raxml', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'ruby-net-telnet', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'bzip2', 'perl-modules', 'libjson-xs-perl', 'libxfixes3:amd64', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libstring-approx-perl', 'libsub-name-perl', 'libmnl0:amd64', 'libdevel-caller-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'fsa', 'libhmsbeagle1v5', 'libdata-perl-perl', 'libxml-writer-perl', 'libcdt5', 'libvm-ec2-perl', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl'] 3m47.6s DUMP: dpkg: warning: ignoring request to remove libjbig2dec0 which isn't installed (Reading database ... 8600 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... dpkg: warning: ignoring request to remove libxtables12 which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libmro-compat-perl which isn't installed Purging configuration files for unzip (6.0-21) ... dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libtext-template-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-load-conditional-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libmath-spline-perl which isn't installed Purging configuration files for libxml-sax-perl (0.99+dfsg-2) ... dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove libcgi-session-perl which isn't installed dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-constants-perl which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove libxml-dom-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libmoo-perl which isn't installed dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove libcrypt-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed dpkg: warning: ignoring request to remove gawk which isn't installed dpkg: warning: ignoring request to remove libmoox-handlesvia-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-perl which isn't installed dpkg: warning: ignoring request to remove libipc-sharelite-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed Purging configuration files for bwa (0.7.15-2) ... dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for libruby2.1:amd64 (2.1.5-2+deb8u3) ... dpkg: warning: ignoring request to remove bioperl-run which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed Purging configuration files for ssl-cert (1.0.39) ... dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove libossp-uuid16 which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove libcupsimage2 which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove libnamespace-clean-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libhpdf-2.2.1 which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove hyphy-common which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed Purging configuration files for fonts-droid (1:4.4.4r2-6) ... dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed Purging configuration files for libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libarchive-extract-perl which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed Purging configuration files for perl-doc (5.24.1-3+deb9u4) ... Purging configuration files for lynx-common (2.8.9dev11-1) ... Purging configuration files for libvpx1:amd64 (1.3.0-3+deb8u1) ... Purging configuration files for libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... dpkg: warning: ignoring request to remove libev-perl which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed Purging configuration files for bedtools (2.26.0+dfsg-3) ... Purging configuration files for primer3 (2.3.7-3) ... dpkg: warning: ignoring request to remove libcpan-changes-perl which isn't installed Purging configuration files for libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... dpkg: warning: ignoring request to remove libmodule-signature-perl which isn't installed dpkg: warning: ignoring request to remove libunicode-utf8-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove maq which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed Purging configuration files for libstaden-read1 (1.13.7-1) ... Purging configuration files for beignet-opencl-icd:amd64 (1.3.0-4) ... dpkg: warning: ignoring request to remove libmultidimensional-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed Purging configuration files for med-config (3.0.1) ... dpkg: warning: ignoring request to remove libgd-svg-perl which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed Purging configuration files for libprocps3:amd64 (2:3.3.9-9+deb8u1) ... dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libheap-perl which isn't installed dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove libguard-perl which isn't installed Purging configuration files for gbrowse (2.56+dfsg-2) ... dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed Purging configuration files for python (2.7.13-2) ... dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove libpsm-infinipath1 which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-random-seed-perl which isn't installed dpkg: warning: ignoring request to remove libsoftware-license-perl which isn't installed Purging configuration files for dbus (1.10.26-0+deb9u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove openmpi-common which isn't installed dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed Purging configuration files for libmagic1:amd64 (1:5.30-1+deb9u2) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed dpkg: warning: ignoring request to remove libmath-derivative-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed Purging configuration files for poppler-data (0.4.7-8) ... dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libcpan-meta-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed Purging configuration files for openssl (1.1.0f-3+deb9u2) ... dpkg: warning: while removing openssl, directory '/etc/ssl/certs' not empty so not removed dpkg: warning: ignoring request to remove libanyevent-http-perl which isn't installed Purging configuration files for fontconfig-config (2.11.0-6.7) ... Purging configuration files for libssl1.0.2:amd64 (1.0.2l-2+deb9u3) ... dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libdate-calc-xs-perl which isn't installed dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed Purging configuration files for libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libdata-section-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libtypes-serialiser-perl which isn't installed dpkg: warning: ignoring request to remove prank which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libxml-filter-buffertext-perl which isn't installed Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed Purging configuration files for xdg-user-dirs (0.15-2+b1) ... dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove ruby2.3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libmath-random-isaac-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libxdot4 which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-pluggable-perl which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for clustalw (2.1+lgpl-5) ... dpkg: warning: ignoring request to remove libncbi6 which isn't installed dpkg: warning: ignoring request to remove libgvpr2 which isn't installed Purging configuration files for libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed dpkg: warning: ignoring request to remove clustalo which isn't installed dpkg: warning: ignoring request to remove libdate-calc-perl which isn't installed dpkg: warning: ignoring request to remove libb-hooks-endofscope-perl which isn't installed Purging configuration files for gnupg-agent (2.1.18-8~deb9u3) ... Purging configuration files for libapache2-mod-perl2 (2.0.10-2) ... dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libjcode-pm-perl which isn't installed Purging configuration files for libnl-3-200:amd64 (3.2.27-2) ... dpkg: warning: ignoring request to remove libimport-into-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libpadwalker-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for iproute2 (4.9.0-1+deb9u1) ... Purging configuration files for libdivsufsort3:amd64 (2.0.1-2) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove libdns-export162 which isn't installed dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed Purging configuration files for isc-dhcp-client (4.3.5-3+deb9u1) ... dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libcommon-sense-perl which isn't installed dpkg: warning: ignoring request to remove libparams-util-perl which isn't installed Purging configuration files for mysql-common (5.8+1.0.2) ... dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libterm-ui-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-perl which isn't installed dpkg: warning: ignoring request to remove lynx-cur which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libpath-tiny-perl which isn't installed Purging configuration files for menu (2.1.47+b1) ... Purging configuration files for fonts-noto-mono (20161116-1) ... dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed Purging configuration files for fontconfig (2.11.0-6.7+b1) ... dpkg: warning: ignoring request to remove libgts-bin which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove infernal which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.50.3-2) ... Purging configuration files for graphviz (2.38.0-17) ... dpkg: warning: ignoring request to remove libgs9 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libanyevent-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed Purging configuration files for libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove liblexical-sealrequirehints-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libjs-prototype which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libdevel-lexalias-perl which isn't installed dpkg: warning: ignoring request to remove libruby2.3 which isn't installed dpkg: warning: ignoring request to remove libjs-scriptaculous which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed dpkg: warning: ignoring request to remove libpod-readme-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libparams-validate-perl which isn't installed Purging configuration files for sgml-base (1.29) ... dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove libisc-export160 which isn't installed dpkg: warning: ignoring request to remove libanyevent-cachedns-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove liblua5.2-0 which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... dpkg: warning: ignoring request to remove libbio-scf-perl which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed Purging configuration files for mime-support (3.60) ... dpkg: warning: ignoring request to remove libmpfr4 which isn't installed dpkg: warning: ignoring request to remove libgetopt-long-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed Purging configuration files for ncbi-data (6.1.20170106-2) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Purging configuration files for ucf (3.0036) ... dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libmariadbclient18 which isn't installed dpkg: warning: ignoring request to remove libdevel-globaldestruction-perl which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for ifupdown (0.8.19) ... dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed Purging configuration files for netbase (5.4) ... dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpod-latex-perl (0.61-2) ... dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed dpkg: warning: ignoring request to remove libpod-markdown-perl which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed Purging configuration files for kalign (1:2.03+20110620-3) ... dpkg: warning: ignoring request to remove libijs-0.35 which isn't installed dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed dpkg: warning: ignoring request to remove libnamespace-autoclean-perl which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libstaden-read11 which isn't installed dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libindirect-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed Purging configuration files for samtools (1.3.1-3) ... Purging configuration files for libxtables10 (1.4.21-2+b1) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove sqlite3 which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed Purging configuration files for libgvc6 (2.38.0-17) ... Purging configuration files for openmpi-bin (2.0.2-2) ... dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for libpaper1:amd64 (1.1.24+nmu5) ... Purging configuration files for libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libxpm4 which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed Purging configuration files for python2.7-minimal (2.7.13-2+deb9u3) ... dpkg: warning: ignoring request to remove libopenmpi2 which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed Purging configuration files for libmodule-build-perl (0.422000-1) ... Purging configuration files for apache2 (2.4.25-3+deb9u6) ... dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove libbareword-filehandles-perl which isn't installed dpkg: warning: ignoring request to remove libtext-soundex-perl which isn't installed Purging configuration files for ca-certificates (20161130+nmu1+deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libasync-interrupt-perl which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for shared-mime-info (1.8-1+deb9u1) ... dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libhts1 which isn't installed Purging configuration files for blends-common (0.6.96) ... dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove libmath-random-isaac-xs-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove hyphy-mpi which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed Purging configuration files for xml-core (0.17) ... dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbytes-random-secure-perl which isn't installed Purging configuration files for perl (5.24.1-3+deb9u4) ... dpkg: warning: ignoring request to remove libatm1 which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libbio-coordinate-perl which isn't installed dpkg: warning: ignoring request to remove ruby2.1 which isn't installed Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove liblua5.1-0 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed Purging configuration files for lynx (2.8.9dev11-1) ... dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libcupsfilters1 which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... dpkg: warning: ignoring request to remove libjson-xs-perl which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libstring-approx-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libmnl0 which isn't installed dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed dpkg: warning: ignoring request to remove fsa which isn't installed dpkg: warning: ignoring request to remove libhmsbeagle1v5 which isn't installed dpkg: warning: ignoring request to remove libdata-perl-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libvm-ec2-perl which isn't installed Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed Processing triggers for systemd (232-25+deb9u6) ... 3m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg', '--purge', 'libjbig2dec0:amd64', 'libgssapi-krb5-2:amd64', 'libxtables12:amd64', 'libsigsegv2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'libelf1:amd64', 'emboss', 'libdbus-1-3:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libbio-graphics-perl', 'libole-storage-lite-perl', 'libmro-compat-perl', 'unzip', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libmodule-load-conditional-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'libmath-spline-perl', 'libxml-sax-perl', 'dialign-tx', 'libcgi-session-perl', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'libdrm2:amd64', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libhwloc5:amd64', 'libxml-dom-perl', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'mafft', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'gawk', 'libmoox-handlesvia-perl', 'libfile-slurp-perl', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'pinentry-curses', 'libruby2.1:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'xz-utils', 'libossp-uuid16:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libcupsimage2:amd64', 'zip', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libace-perl', 'libhpdf-2.2.1', 'libperl5.24:amd64', 'libb-hooks-op-check-perl', 'hyphy-common', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'ruby-minitest', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libopenjp2-7:amd64', 'libcairo2:amd64', 'perl-doc', 'lynx-common', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libev-perl', 'proda', 'bedtools', 'primer3', 'libcpan-changes-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libunicode-utf8-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libstaden-read1', 'beignet-opencl-icd:amd64', 'libmultidimensional-perl', 'libxml-libxslt-perl', 'perl-modules-5.24', 'med-config', 'libgd-svg-perl', 'fonts-liberation', 'libkrb5support0:amd64', 'libwebp6:amd64', 'libprocps3:amd64', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libjs-jquery', 'libfile-listing-perl', 'libxml-perl', 'libheap-perl', 'mummer', 'libbio-asn1-entrezgene-perl', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'ocl-icd-libopencl1:amd64', 'libguard-perl', 'gbrowse', 'ruby-power-assert', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'rake', 'libpsm-infinipath1', 'publicsuffix', 'fonts-droid-fallback', 'libyaml-libyaml-perl', 'libcrypt-random-seed-perl', 'libsoftware-license-perl', 'dbus', 'libgomp1:amd64', 'libthai0:amd64', 'openmpi-common', 'hmmer', 'libann0', 'libmagic1:amd64', 'libnl-route-3-200:amd64', 'libwww-perl', 'ncbi-blast+-legacy', 'libmath-derivative-perl', 'libxml-sax-base-perl', 'poppler-data', 'libpng16-16:amd64', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'openssl', 'libanyevent-http-perl', 'fontconfig-config', 'libssl1.0.2:amd64', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libmysqlclient18:amd64', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'libtypes-serialiser-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'ruby2.3', 'libgraphviz-perl', 'libmath-random-isaac-perl', 'libalgorithm-munkres-perl', 'libxdot4', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'libicu57:amd64', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libgvpr2', 'libisccfg-export90', 'phyml', 'gnupg', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'gnupg-agent', 'libapache2-mod-perl2', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'libfabric1', 'libjcode-pm-perl', 'libnl-3-200:amd64', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libexpat1:amd64', 'libxau6:amd64', 'iproute2', 'libdivsufsort3:amd64', 'krb5-locales', 'exonerate', 'libdns-export162', 'libgts-0.7-5:amd64', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libnuma1:amd64', 'libcommon-sense-perl', 'libparams-util-perl', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libpath-tiny-perl', 'menu', 'fonts-noto-mono', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libgts-bin', 'libcurl3-gnutls:amd64', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libgs9:amd64', 'libbsd0:amd64', 'libanyevent-perl', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libmagic-mgc', 'apache2-utils', 'libio-socket-ssl-perl', 'libjs-prototype', 'libfont-afm-perl', 'libidn2-0:amd64', 'libdevel-lexalias-perl', 'libruby2.3:amd64', 'libjs-scriptaculous', 'libtype-tiny-xs-perl', 'emboss-lib', 'libpod-readme-perl', 'libsub-exporter-perl', 'isc-dhcp-common', 'librdmacm1', 'libio-sessiondata-perl', 'libparams-validate-perl', 'sgml-base', 'ruby-did-you-mean', 'libisc-export160', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'liblua5.2-0:amd64', 'libhttp-message-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libnghttp2-14:amd64', 'libgnutls-deb0-28:amd64', 'libbio-scf-perl', 'perl-openssl-defaults:amd64', 'mime-support', 'libmpfr4:amd64', 'libgetopt-long-descriptive-perl', 'phylip', 'ncbi-data', 'libharfbuzz0b:amd64', 'libsm6:amd64', 'perl-tk', 'libbit-vector-perl', 'libunistring0:amd64', 't-coffee', 'libpython-stdlib:amd64', 'ucf', 'ruby-test-unit', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libmariadbclient18:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libsub-identify-perl', 'netbase', 'libjson-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libvariable-magic-perl', 'libpod-markdown-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'libxt6:amd64', 'kalign', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libnamespace-autoclean-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'libstaden-read11:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libfile-slurp-tiny-perl', 'libindirect-perl', 'libxml-regexp-perl', 'samtools', 'libxtables10', 'probalign', 'libio-pty-perl', 'libpathplan4', 'sqlite3', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libibverbs1', 'libgvc6', 'openmpi-bin', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libopenmpi2:amd64', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libpng12-0:amd64', 'libxml-sax-expat-perl', 'libssh2-1:amd64', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'fonts-lato', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libasync-interrupt-perl', 'libterm-readkey-perl', 'apache2-bin', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libpackage-stash-perl', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libx11-6:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpixman-1-0:amd64', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libsvg-perl', 'libparams-classify-perl', 'libpsl5:amd64', 'libhts1:amd64', 'blends-common', 'libxml-twig-perl', 'libxdmcp6:amd64', 'blast2', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libmath-random-isaac-xs-perl', 'libxml-parser-perl', 'libregexp-common-perl', 'libfreetype6:amd64', 'hyphy-mpi', 'librtmp1:amd64', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libbsd-resource-perl', 'libbytes-random-secure-perl', 'perl', 'libatm1:amd64', 'libhttp-daemon-perl', 'libbio-coordinate-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'libxrender1:amd64', 'libjbig0:amd64', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'raxml', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'ruby-net-telnet', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'bzip2', 'perl-modules', 'libjson-xs-perl', 'libxfixes3:amd64', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libstring-approx-perl', 'libsub-name-perl', 'libmnl0:amd64', 'libdevel-caller-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'fsa', 'libhmsbeagle1v5', 'libdata-perl-perl', 'libxml-writer-perl', 'libcdt5', 'libvm-ec2-perl', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl'] 3m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg', '--purge', 'gbrowse-calign'] 3m47.6s DUMP: dpkg: warning: ignoring request to remove gbrowse-calign which isn't installed 3m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg', '--purge', 'gbrowse-calign'] 3m47.6s INFO: Running scripts post_purge 3m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_purge_exceptions'] 3m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_purge_exceptions'] 3m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg', '--purge', '--pending'] 3m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg', '--purge', '--pending'] 3m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg', '--remove', '--pending'] 3m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg', '--remove', '--pending'] 3m47.7s INFO: Running scripts post_test 3m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_test_exceptions'] 3m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'tmp/scripts/post_test_exceptions'] 3m47.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m48.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m48.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg-divert', '--list'] 3m48.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 3m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'dpkg-divert', '--list'] 3m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', 'clean'] 3m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF', 'apt-get', 'clean'] 3m48.6s DEBUG: Recording chroot state 3m50.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/shm'] 3m50.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/shm'] 3m50.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/console'] 3m50.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/console'] 3m50.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/ptmx'] 3m50.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/ptmx'] 3m50.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/pts'] 3m50.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/dev/pts'] 3m50.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/proc'] 3m50.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF/proc'] 3m50.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m50.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6Y0ouF'] 3m50.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6Y0ouF 3m50.6s INFO: PASS: Upgrading between Debian distributions. 3m50.6s INFO: PASS: All tests. 3m50.6s INFO: piuparts run ends. ret=0 End: 2018-11-14 14:44:00 UTC