Start: 2022-10-30 01:08:15 GMT [jessie] Package: gromacs Version: 5.0.2-1 Installed-Size: 31848 Maintainer: Debichem Team Architecture: amd64 Depends: gromacs-data (= 5.0.2-1), libblas3 | libblas.so.3, libc6 (>= 2.15), libfftw3-double3, libfftw3-single3, libgcc1 (>= 1:4.1.1), libgomp1 (>= 4.9), liblapack3 | liblapack.so.3, libstdc++6 (>= 4.9), libx11-6, zlib1g (>= 1:1.2.0) Recommends: cpp Suggests: pymol Description: Molecular dynamics simulator, with building and analysis tools Homepage: http://www.gromacs.org/ Description-md5: 6d908e4fc9e5c66b95da44191b20d095 Tag: field::biology, field::biology:structural, field::chemistry, implemented-in::c, interface::commandline, interface::x11, role::program, uitoolkit::xlib, x11::application Section: science Priority: extra Filename: pool/main/g/gromacs/gromacs_5.0.2-1_amd64.deb Size: 11497540 MD5sum: b3df150e2bf45918c4bafac7ce4d63dd SHA1: fa4644947f24b928b70e5f9d43436e3fb929c8d7 SHA256: 404cd47984ac1fd681ccab2be2f169ece52ed26f9690fcb7d4e9bfba857d785f [stretch] Package: gromacs Version: 2016.1-2 Installed-Size: 823 Maintainer: Debichem Team Architecture: amd64 Depends: gromacs-data (= 2016.1-2), libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgromacs2, libstdc++6 (>= 5.2), libx11-6 Recommends: cpp Suggests: pymol Description: Molecular dynamics simulator, with building and analysis tools Homepage: http://www.gromacs.org/ Description-md5: 6d908e4fc9e5c66b95da44191b20d095 Tag: field::biology, field::biology:structural, field::chemistry, implemented-in::c, interface::commandline, interface::graphical, interface::x11, role::program, uitoolkit::xlib, x11::application Section: science Priority: extra Filename: pool/main/g/gromacs/gromacs_2016.1-2_amd64.deb Size: 233970 MD5sum: cc0e425686804bca907b99397490d8fc SHA256: 1b84466a227029afdc61594899b23ca81280a46a1f8e6f15aca8403e7850ce4c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt gromacs=2016.1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt gromacs=2016.1-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpe789smlk 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpe789smlk 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe789smlk', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe789smlk', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe789smlk/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe789smlk/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpe789smlk/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', 'update'] 0m4.3s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', 'update'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.8s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.8s INFO: Running scripts post_setup 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_dummy_users'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_dummy_users'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_forbid_home'] 0m5.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_forbid_home'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_minimize'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_minimize'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_zz_backports'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_setup_zz_backports'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat 0m5.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 0m6.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 0m6.2s INFO: Running scripts is_testable 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/is_testable_uninstallable'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/is_testable_uninstallable'] 0m6.2s INFO: Running scripts pre_test 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_test_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_test_exceptions'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_test_root_password'] 0m6.2s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_test_root_password'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'show', '--no-all-versions', 'gromacs'] 0m6.2s DUMP: Package: gromacs Version: 5.0.2-1 Installed-Size: 31848 Maintainer: Debichem Team Architecture: amd64 Depends: gromacs-data (= 5.0.2-1), libblas3 | libblas.so.3, libc6 (>= 2.15), libfftw3-double3, libfftw3-single3, libgcc1 (>= 1:4.1.1), libgomp1 (>= 4.9), liblapack3 | liblapack.so.3, libstdc++6 (>= 4.9), libx11-6, zlib1g (>= 1:1.2.0) Recommends: cpp Suggests: pymol Description-en: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. Description-md5: 6d908e4fc9e5c66b95da44191b20d095 Homepage: http://www.gromacs.org/ Tag: field::biology, field::biology:structural, field::chemistry, implemented-in::c, interface::commandline, interface::x11, role::program, uitoolkit::xlib, x11::application Section: science Priority: extra Filename: pool/main/g/gromacs/gromacs_5.0.2-1_amd64.deb Size: 11497540 MD5sum: b3df150e2bf45918c4bafac7ce4d63dd SHA1: fa4644947f24b928b70e5f9d43436e3fb929c8d7 SHA256: 404cd47984ac1fd681ccab2be2f169ece52ed26f9690fcb7d4e9bfba857d785f 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'show', '--no-all-versions', 'gromacs'] 0m6.2s INFO: apt-cache knows about the following packages: gromacs 0m6.2s INFO: Running scripts pre_install 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy'] 0m6.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy', 'gromacs'] 0m6.3s DUMP: gromacs: Installed: (none) Candidate: 5.0.2-1 Version table: 5.0.2-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy', 'gromacs'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-y', 'install', 'gromacs'] 0m11.5s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: cpp cpp-4.9 gromacs-data libblas-common libblas3 libcloog-isl4 libfftw3-double3 libfftw3-single3 libgfortran3 libgmp10 libgomp1 libisl10 liblapack3 libmpc3 libmpfr4 libquadmath0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 Suggested packages: cpp-doc gcc-4.9-locales pymol tcsh c-shell libfftw3-bin libfftw3-dev The following NEW packages will be installed: cpp cpp-4.9 gromacs gromacs-data libblas-common libblas3 libcloog-isl4 libfftw3-double3 libfftw3-single3 libgfortran3 libgmp10 libgomp1 libisl10 liblapack3 libmpc3 libmpfr4 libquadmath0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 23.5 MB of archives. After this operation, 76.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:2 http://deb.debian.org/debian/ jessie/main libisl10 amd64 0.12.2-2 [440 kB] Get:3 http://deb.debian.org/debian/ jessie/main libcloog-isl4 amd64 0.18.2-1+b2 [61.8 kB] Get:4 http://deb.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:5 http://deb.debian.org/debian/ jessie/main libfftw3-double3 amd64 3.3.4-2 [722 kB] Get:6 http://deb.debian.org/debian/ jessie/main libfftw3-single3 amd64 3.3.4-2 [754 kB] Get:7 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:8 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:9 http://deb.debian.org/debian/ jessie/main libmpfr4 amd64 3.1.2-2 [527 kB] Get:10 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:11 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:12 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:13 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:14 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:15 http://deb.debian.org/debian/ jessie/main libmpc3 amd64 1.0.2-1 [39.3 kB] Get:16 http://deb.debian.org/debian/ jessie/main cpp-4.9 amd64 4.9.2-10+deb8u1 [5002 kB] Get:17 http://deb.debian.org/debian/ jessie/main cpp amd64 4:4.9.2-2 [17.3 kB] Get:18 http://deb.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:19 http://deb.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:20 http://deb.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:21 http://deb.debian.org/debian/ jessie/main gromacs-data all 5.0.2-1 [785 kB] Get:22 http://deb.debian.org/debian/ jessie/main gromacs amd64 5.0.2-1 [11.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.5 MB in 1s (18.7 MB/s) Selecting previously unselected package libgmp10:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libisl10:amd64. Preparing to unpack .../libisl10_0.12.2-2_amd64.deb ... Unpacking libisl10:amd64 (0.12.2-2) ... Selecting previously unselected package libcloog-isl4:amd64. Preparing to unpack .../libcloog-isl4_0.18.2-1+b2_amd64.deb ... Unpacking libcloog-isl4:amd64 (0.18.2-1+b2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgomp1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../libfftw3-double3_3.3.4-2_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.4-2) ... Selecting previously unselected package libfftw3-single3:amd64. Preparing to unpack .../libfftw3-single3_3.3.4-2_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.4-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_4.9.2-10+deb8u1_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libmpfr4:amd64. Preparing to unpack .../libmpfr4_3.1.2-2_amd64.deb ... Unpacking libmpfr4:amd64 (3.1.2-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-3+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.10-3+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-3+deb8u1_all.deb ... Unpacking libx11-data (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.2-3+deb8u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libmpc3:amd64. Preparing to unpack .../libmpc3_1.0.2-1_amd64.deb ... Unpacking libmpc3:amd64 (1.0.2-1) ... Selecting previously unselected package cpp-4.9. Preparing to unpack .../cpp-4.9_4.9.2-10+deb8u1_amd64.deb ... Unpacking cpp-4.9 (4.9.2-10+deb8u1) ... Selecting previously unselected package cpp. Preparing to unpack .../cpp_4%3a4.9.2-2_amd64.deb ... Unpacking cpp (4:4.9.2-2) ... Selecting previously unselected package libblas-common. Preparing to unpack .../libblas-common_1.2.20110419-10_amd64.deb ... Unpacking libblas-common (1.2.20110419-10) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-10_amd64.deb ... Unpacking libblas3 (1.2.20110419-10) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-4_amd64.deb ... Unpacking liblapack3 (3.5.0-4) ... Selecting previously unselected package gromacs-data. Preparing to unpack .../gromacs-data_5.0.2-1_all.deb ... Unpacking gromacs-data (5.0.2-1) ... Selecting previously unselected package gromacs. Preparing to unpack .../gromacs_5.0.2-1_amd64.deb ... Unpacking gromacs (5.0.2-1) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libisl10:amd64 (0.12.2-2) ... Setting up libcloog-isl4:amd64 (0.18.2-1+b2) ... Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libfftw3-double3:amd64 (3.3.4-2) ... Setting up libfftw3-single3:amd64 (3.3.4-2) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libmpfr4:amd64 (3.1.2-2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libmpc3:amd64 (1.0.2-1) ... Setting up cpp-4.9 (4.9.2-10+deb8u1) ... Setting up cpp (4:4.9.2-2) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up gromacs-data (5.0.2-1) ... Setting up gromacs (5.0.2-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-y', 'install', 'gromacs'] 0m11.5s INFO: Running scripts post_install 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_install_exceptions'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_install_exceptions'] 0m11.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 0m11.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 0m11.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpe789smlk to stretch 0m11.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m11.9s INFO: Running scripts pre_distupgrade 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', 'update'] 0m15.1s DUMP: Ign http://deb.debian.org stretch InRelease Get:1 http://deb.debian.org stretch Release.gpg [3177 B] Get:2 http://deb.debian.org stretch Release [118 kB] Get:3 http://deb.debian.org stretch/main amd64 Packages [7080 kB] Get:4 http://deb.debian.org stretch/main Translation-en [5377 kB] Fetched 12.6 MB in 1s (6617 kB/s) Reading package lists... W: There is no public key available for the following key IDs: 648ACFD622F3D138 NO_PUBKEY 0E98404D386FA1D9 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', 'update'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-y', 'upgrade'] 0m27.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages have been kept back: apt cpp dmsetup gnupg gromacs gromacs-data init initscripts libaudit1 libc-bin libc6 libcloog-isl4 libcryptsetup4 libdevmapper1.02.1 libgcc1 libgfortran3 libgomp1 liblocale-gettext-perl libquadmath0 libstdc++6 libsystemd0 libtext-charwidth-perl libtext-iconv-perl libudev1 libxdmcp6 perl-base procps systemd sysv-rc sysvinit-utils udev util-linux The following packages will be upgraded: acl adduser base-files base-passwd bash bsdutils coreutils dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs findutils gpgv grep gzip hostname insserv libacl1 libattr1 libaudit-common libblas-common libblas3 libblkid1 libbz2-1.0 libcap2 libcap2-bin libcomerr2 libdb5.3 libdebconfclient0 libfftw3-double3 libfftw3-single3 libgcrypt20 libgmp10 libgpg-error0 libkmod2 liblapack3 liblzma5 libmount1 libmpc3 libmpfr4 libncurses5 libncursesw5 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libss2 libtext-wrapi18n-perl libtinfo5 libusb-0.1-4 libustr-1.0-1 libuuid1 libx11-6 libx11-data libxcb1 login lsb-base mawk mount multiarch-support ncurses-base ncurses-bin passwd readline-common sed sensible-utils startpar systemd-sysv tar tzdata zlib1g 83 upgraded, 0 newly installed, 0 to remove and 32 not upgraded. Need to get 26.2 MB of archives. After this operation, 8356 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ stretch/main base-files amd64 9.9+deb9u13 [67.6 kB] Get:2 http://deb.debian.org/debian/ stretch/main libtinfo5 amd64 6.0+20161126-1+deb9u2 [300 kB] Get:3 http://deb.debian.org/debian/ stretch/main libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:4 http://deb.debian.org/debian/ stretch/main libncursesw5 amd64 6.0+20161126-1+deb9u2 [115 kB] Get:5 http://deb.debian.org/debian/ stretch/main sensible-utils all 0.0.9+deb9u1 [10.8 kB] Get:6 http://deb.debian.org/debian/ stretch/main debianutils amd64 4.8.1.1 [100 kB] Get:7 http://deb.debian.org/debian/ stretch/main bash amd64 4.4-5 [1427 kB] Get:8 http://deb.debian.org/debian/ stretch/main bsdutils amd64 1:2.29.2-1+deb9u1 [112 kB] Get:9 http://deb.debian.org/debian/ stretch/main coreutils amd64 8.26-3 [2870 kB] Get:10 http://deb.debian.org/debian/ stretch/main tar amd64 1.29b-1.1 [759 kB] Get:11 http://deb.debian.org/debian/ stretch/main liblzma5 amd64 5.2.2-1.2+b1 [234 kB] Get:12 http://deb.debian.org/debian/ stretch/main dpkg amd64 1.18.25 [2115 kB] Get:13 http://deb.debian.org/debian/ stretch/main dash amd64 0.5.8-2.4 [109 kB] Get:14 http://deb.debian.org/debian/ stretch/main diffutils amd64 1:3.5-3 [314 kB] Get:15 http://deb.debian.org/debian/ stretch/main e2fslibs amd64 1.43.4-2+deb9u1 [208 kB] Get:16 http://deb.debian.org/debian/ stretch/main e2fsprogs amd64 1.43.4-2+deb9u1 [947 kB] Get:17 http://deb.debian.org/debian/ stretch/main findutils amd64 4.6.0+git+20161106-2 [622 kB] Get:18 http://deb.debian.org/debian/ stretch/main grep amd64 2.27-2 [382 kB] Get:19 http://deb.debian.org/debian/ stretch/main gzip amd64 1.6-5+b1 [114 kB] Get:20 http://deb.debian.org/debian/ stretch/main hostname amd64 3.18+b1 [14.9 kB] Get:21 http://deb.debian.org/debian/ stretch/main login amd64 1:4.4-4.1 [790 kB] Get:22 http://deb.debian.org/debian/ stretch/main libpcre3 amd64 2:8.39-3 [337 kB] Get:23 http://deb.debian.org/debian/ stretch/main libselinux1 amd64 2.6-3+b3 [101 kB] Get:24 http://deb.debian.org/debian/ stretch/main libsmartcols1 amd64 2.29.2-1+deb9u1 [126 kB] Get:25 http://deb.debian.org/debian/ stretch/main mount amd64 2.29.2-1+deb9u1 [189 kB] Get:26 http://deb.debian.org/debian/ stretch/main ncurses-bin amd64 6.0+20161126-1+deb9u2 [366 kB] Get:27 http://deb.debian.org/debian/ stretch/main sed amd64 4.4-1 [280 kB] Get:28 http://deb.debian.org/debian/ stretch/main libdebconfclient0 amd64 0.227 [47.8 kB] Get:29 http://deb.debian.org/debian/ stretch/main base-passwd amd64 3.5.43 [57.7 kB] Get:30 http://deb.debian.org/debian/ stretch/main ncurses-base all 6.0+20161126-1+deb9u2 [238 kB] Get:31 http://deb.debian.org/debian/ stretch/main systemd-sysv amd64 232-25+deb9u12 [82.5 kB] Get:32 http://deb.debian.org/debian/ stretch/main libtext-wrapi18n-perl all 0.06-7.1 [8644 B] Get:33 http://deb.debian.org/debian/ stretch/main debconf-i18n all 1.5.61 [205 kB] Get:34 http://deb.debian.org/debian/ stretch/main debconf all 1.5.61 [159 kB] Get:35 http://deb.debian.org/debian/ stretch/main libpam0g amd64 1.1.8-3.6 [125 kB] Get:36 http://deb.debian.org/debian/ stretch/main libpam-modules-bin amd64 1.1.8-3.6 [105 kB] Get:37 http://deb.debian.org/debian/ stretch/main libpam-modules amd64 1.1.8-3.6 [308 kB] Get:38 http://deb.debian.org/debian/ stretch/main mawk amd64 1.3.3-17+b3 [84.6 kB] Get:39 http://deb.debian.org/debian/ stretch/main libsepol1 amd64 2.6-2 [241 kB] Get:40 http://deb.debian.org/debian/ stretch/main libsemanage-common all 2.6-2 [26.9 kB] Get:41 http://deb.debian.org/debian/ stretch/main libsemanage1 amd64 2.6-2 [103 kB] Get:42 http://deb.debian.org/debian/ stretch/main libbz2-1.0 amd64 1.0.6-8.1 [43.5 kB] Get:43 http://deb.debian.org/debian/ stretch/main libustr-1.0-1 amd64 1.0.4-6 [76.3 kB] Get:44 http://deb.debian.org/debian/ stretch/main passwd amd64 1:4.4-4.1 [996 kB] Get:45 http://deb.debian.org/debian/ stretch/main adduser all 3.115 [241 kB] Get:46 http://deb.debian.org/debian/ stretch/main libgpg-error0 amd64 1.26-2 [112 kB] Get:47 http://deb.debian.org/debian/ stretch/main libgcrypt20 amd64 1.7.6-2+deb9u3 [524 kB] Get:48 http://deb.debian.org/debian/ stretch/main zlib1g amd64 1:1.2.8.dfsg-5 [87.5 kB] Get:49 http://deb.debian.org/debian/ stretch/main gpgv amd64 2.1.18-8~deb9u4 [481 kB] Get:50 http://deb.debian.org/debian/ stretch/main debian-archive-keyring all 2017.5+deb9u1 [73.9 kB] Get:51 http://deb.debian.org/debian/ stretch/main libkmod2 amd64 23-2 [48.1 kB] Get:52 http://deb.debian.org/debian/ stretch/main libslang2 amd64 2.3.1-5 [503 kB] Get:53 http://deb.debian.org/debian/ stretch/main readline-common all 7.0-3 [70.4 kB] Get:54 http://deb.debian.org/debian/ stretch/main libattr1 amd64 1:2.4.47-2+b2 [18.4 kB] Get:55 http://deb.debian.org/debian/ stretch/main libacl1 amd64 2.2.52-3+b1 [28.1 kB] Get:56 http://deb.debian.org/debian/ stretch/main acl amd64 2.2.52-3+b1 [59.5 kB] Get:57 http://deb.debian.org/debian/ stretch/main libuuid1 amd64 2.29.2-1+deb9u1 [70.1 kB] Get:58 http://deb.debian.org/debian/ stretch/main libblkid1 amd64 2.29.2-1+deb9u1 [168 kB] Get:59 http://deb.debian.org/debian/ stretch/main libcomerr2 amd64 1.43.4-2+deb9u1 [63.5 kB] Get:60 http://deb.debian.org/debian/ stretch/main libmount1 amd64 2.29.2-1+deb9u1 [178 kB] Get:61 http://deb.debian.org/debian/ stretch/main libpam-runtime all 1.1.8-3.6 [212 kB] Get:62 http://deb.debian.org/debian/ stretch/main libss2 amd64 1.43.4-2+deb9u1 [67.8 kB] Get:63 http://deb.debian.org/debian/ stretch/main lsb-base all 9.20161125 [27.9 kB] Get:64 http://deb.debian.org/debian/ stretch/main multiarch-support amd64 2.24-11+deb9u4 [201 kB] Get:65 http://deb.debian.org/debian/ stretch/main tzdata all 2020a-0+deb9u1 [278 kB] Get:66 http://deb.debian.org/debian/ stretch/main libcap2 amd64 1:2.25-1 [16.8 kB] Get:67 http://deb.debian.org/debian/ stretch/main libdb5.3 amd64 5.3.28-12+deb9u1 [679 kB] Get:68 http://deb.debian.org/debian/ stretch/main insserv amd64 1.14.0-5.4+b1 [61.8 kB] Get:69 http://deb.debian.org/debian/ stretch/main libaudit-common all 1:2.6.7-2 [18.1 kB] Get:70 http://deb.debian.org/debian/ stretch/main libcap2-bin amd64 1:2.25-1 [26.5 kB] Get:71 http://deb.debian.org/debian/ stretch/main libusb-0.1-4 amd64 2:0.1.12-30 [22.9 kB] Get:72 http://deb.debian.org/debian/ stretch/main startpar amd64 0.59-3.1 [22.5 kB] Get:73 http://deb.debian.org/debian/ stretch/main libblas-common amd64 3.7.0-2 [14.2 kB] Get:74 http://deb.debian.org/debian/ stretch/main libblas3 amd64 3.7.0-2 [155 kB] Get:75 http://deb.debian.org/debian/ stretch/main libfftw3-double3 amd64 3.3.5-3 [731 kB] Get:76 http://deb.debian.org/debian/ stretch/main libfftw3-single3 amd64 3.3.5-3 [776 kB] Get:77 http://deb.debian.org/debian/ stretch/main libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:78 http://deb.debian.org/debian/ stretch/main liblapack3 amd64 3.7.0-2 [2141 kB] Get:79 http://deb.debian.org/debian/ stretch/main libmpfr4 amd64 3.1.5-1 [556 kB] Get:80 http://deb.debian.org/debian/ stretch/main libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:81 http://deb.debian.org/debian/ stretch/main libxcb1 amd64 1.12-1 [133 kB] Get:82 http://deb.debian.org/debian/ stretch/main libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:83 http://deb.debian.org/debian/ stretch/main libmpc3 amd64 1.0.3-1+b2 [39.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.2 MB in 1s (18.2 MB/s) (Reading database ... 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Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8945 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libtinfo5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libtinfo5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 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Removing obsolete conffile /etc/bash_completion.d/debconf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8942 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-3.6_amd64.deb ... Unpacking libpam0g:amd64 (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libpam0g:amd64 (1.1.8-3.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8942 files and directories currently installed.) Preparing to unpack .../libslang2_2.3.1-5_amd64.deb ... Unpacking libslang2:amd64 (2.3.1-5) over (2.3.0-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libslang2:amd64 (2.3.1-5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8943 files and directories currently installed.) Preparing to unpack .../readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) over (6.3-8) ... Setting up readline-common (7.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8944 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.4.47-2+b2_amd64.deb ... Unpacking libattr1:amd64 (1:2.4.47-2+b2) over (1:2.4.47-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libattr1:amd64 (1:2.4.47-2+b2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8945 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-3+b1_amd64.deb ... Unpacking libacl1:amd64 (2.2.52-3+b1) over (2.2.52-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libacl1:amd64 (2.2.52-3+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8946 files and directories currently installed.) Preparing to unpack .../acl_2.2.52-3+b1_amd64.deb ... Unpacking acl (2.2.52-3+b1) over (2.2.52-2) ... Setting up acl (2.2.52-3+b1) ... (Reading database ... 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Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libtext-wrapi18n-perl (0.06-7.1) ... Setting up debconf-i18n (1.5.61) ... Setting up mawk (1.3.3-17+b3) ... Setting up libblas-common (3.7.0-2) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: warning: forcing reinstallation of alternative /usr/lib/libblas/libblas.so.3 because link group libblas.so.3 is broken Setting up libfftw3-double3:amd64 (3.3.5-3) ... Setting up libfftw3-single3:amd64 (3.3.5-3) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: warning: forcing reinstallation of alternative /usr/lib/lapack/liblapack.so.3 because link group liblapack.so.3 is broken Setting up libmpfr4:amd64 (3.1.5-1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libmpc3:amd64 (1.0.3-1+b2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-y', 'upgrade'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-yf', 'dist-upgrade'] 1m26.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: cpp-4.9 libcloog-isl4 libisl10 Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: cpp-6 dirmngr gcc-6-base gnupg-agent gnupg-l10n init-system-helpers libapparmor1 libapt-pkg5.0 libassuan0 libbsd0 libcap-ng0 libfdisk1 libffi6 libgnutls30 libgromacs2 libhogweed4 libhwloc-plugins libhwloc5 libicu57 libidn11 libip4tc0 libisl15 libksba8 libldap-2.4-2 libldap-common libltdl7 liblz4-1 libnettle6 libnpth0 libnuma1 libp11-kit0 libpciaccess0 libprocps6 libreadline7 libsasl2-2 libsasl2-modules libsasl2-modules-db libseccomp2 libsqlite3-0 libssl1.1 libtasn1-6 libxml2 manpages ocl-icd-libopencl1 pinentry-curses sgml-base xml-core The following packages will be upgraded: apt cpp dmsetup gnupg gromacs gromacs-data init initscripts libaudit1 libc-bin libc6 libcloog-isl4 libcryptsetup4 libdevmapper1.02.1 libgcc1 libgfortran3 libgomp1 liblocale-gettext-perl libquadmath0 libstdc++6 libsystemd0 libtext-charwidth-perl libtext-iconv-perl libudev1 libxdmcp6 perl-base procps systemd sysv-rc sysvinit-utils udev util-linux 32 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 73.5 MB of archives. After this operation, 193 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ stretch/main libc6 amd64 2.24-11+deb9u4 [2694 kB] Get:2 http://deb.debian.org/debian/ stretch/main libc-bin amd64 2.24-11+deb9u4 [782 kB] Get:3 http://deb.debian.org/debian/ stretch/main gcc-6-base amd64 6.3.0-18+deb9u1 [180 kB] Get:4 http://deb.debian.org/debian/ stretch/main libgcc1 amd64 1:6.3.0-18+deb9u1 [38.0 kB] Get:5 http://deb.debian.org/debian/ stretch/main libfdisk1 amd64 2.29.2-1+deb9u1 [203 kB] Get:6 http://deb.debian.org/debian/ stretch/main init-system-helpers all 1.48 [44.0 kB] Get:7 http://deb.debian.org/debian/ stretch/main util-linux amd64 2.29.2-1+deb9u1 [981 kB] Get:8 http://deb.debian.org/debian/ stretch/main sysvinit-utils amd64 2.88dsf-59.9 [68.4 kB] Get:9 http://deb.debian.org/debian/ stretch/main initscripts amd64 2.88dsf-59.9 [84.5 kB] Get:10 http://deb.debian.org/debian/ stretch/main sysv-rc all 2.88dsf-59.9 [67.4 kB] Get:11 http://deb.debian.org/debian/ stretch/main libtext-charwidth-perl amd64 0.04-7+b5 [9870 B] Get:12 http://deb.debian.org/debian/ stretch/main libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:13 http://deb.debian.org/debian/ stretch/main perl-base amd64 5.24.1-3+deb9u7 [1346 kB] Get:14 http://deb.debian.org/debian/ stretch/main liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:15 http://deb.debian.org/debian/ stretch/main init amd64 1.48 [12.0 kB] Get:16 http://deb.debian.org/debian/ stretch/main liblz4-1 amd64 0.0~r131-2+b1 [33.3 kB] Get:17 http://deb.debian.org/debian/ stretch/main libstdc++6 amd64 6.3.0-18+deb9u1 [396 kB] Get:18 http://deb.debian.org/debian/ stretch/main libapt-pkg5.0 amd64 1.4.10 [917 kB] Get:19 http://deb.debian.org/debian/ stretch/main apt amd64 1.4.10 [1232 kB] Get:20 http://deb.debian.org/debian/ stretch/main libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:21 http://deb.debian.org/debian/ stretch/main libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:22 http://deb.debian.org/debian/ stretch/main libip4tc0 amd64 1.6.0+snapshot20161117-6 [67.8 kB] Get:23 http://deb.debian.org/debian/ stretch/main libseccomp2 amd64 2.3.1-2.1+deb9u1 [40.7 kB] Get:24 http://deb.debian.org/debian/ stretch/main libudev1 amd64 232-25+deb9u12 [126 kB] Get:25 http://deb.debian.org/debian/ stretch/main libsystemd0 amd64 232-25+deb9u12 [282 kB] Get:26 http://deb.debian.org/debian/ stretch/main systemd amd64 232-25+deb9u12 [2469 kB] Get:27 http://deb.debian.org/debian/ stretch/main udev amd64 232-25+deb9u12 [1113 kB] Get:28 http://deb.debian.org/debian/ stretch/main libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:29 http://deb.debian.org/debian/ stretch/main procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:30 http://deb.debian.org/debian/ stretch/main libcap-ng0 amd64 0.7.7-3+b1 [13.8 kB] Get:31 http://deb.debian.org/debian/ stretch/main libaudit1 amd64 1:2.6.7-2 [51.3 kB] Get:32 http://deb.debian.org/debian/ stretch/main libdevmapper1.02.1 amd64 2:1.02.137-2 [170 kB] Get:33 http://deb.debian.org/debian/ stretch/main dmsetup amd64 2:1.02.137-2 [107 kB] Get:34 http://deb.debian.org/debian/ stretch/main libcryptsetup4 amd64 2:1.7.3-4 [109 kB] Get:35 http://deb.debian.org/debian/ stretch/main sgml-base all 1.29 [14.8 kB] Get:36 http://deb.debian.org/debian/ stretch/main libassuan0 amd64 2.4.3-2 [42.5 kB] Get:37 http://deb.debian.org/debian/ stretch/main pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:38 http://deb.debian.org/debian/ stretch/main libnpth0 amd64 1.3-1 [14.6 kB] Get:39 http://deb.debian.org/debian/ stretch/main libreadline7 amd64 7.0-3 [151 kB] Get:40 http://deb.debian.org/debian/ stretch/main gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:41 http://deb.debian.org/debian/ stretch/main libksba8 amd64 1.3.5-2 [99.7 kB] Get:42 http://deb.debian.org/debian/ stretch/main libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:43 http://deb.debian.org/debian/ stretch/main gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:44 http://deb.debian.org/debian/ stretch/main libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:45 http://deb.debian.org/debian/ stretch/main libnettle6 amd64 3.3-1+b2 [192 kB] Get:46 http://deb.debian.org/debian/ stretch/main libhogweed4 amd64 3.3-1+b2 [136 kB] Get:47 http://deb.debian.org/debian/ stretch/main libffi6 amd64 3.2.1-6 [20.4 kB] Get:48 http://deb.debian.org/debian/ stretch/main libp11-kit0 amd64 0.23.3-2 [111 kB] Get:49 http://deb.debian.org/debian/ stretch/main libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:50 http://deb.debian.org/debian/ stretch/main libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:51 http://deb.debian.org/debian/ stretch/main libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:52 http://deb.debian.org/debian/ stretch/main libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:53 http://deb.debian.org/debian/ stretch/main libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:54 http://deb.debian.org/debian/ stretch/main libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:55 http://deb.debian.org/debian/ stretch/main libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:56 http://deb.debian.org/debian/ stretch/main libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:57 http://deb.debian.org/debian/ stretch/main manpages all 4.10-2 [1222 kB] Get:58 http://deb.debian.org/debian/ stretch/main libisl15 amd64 0.18-1 [564 kB] Get:59 http://deb.debian.org/debian/ stretch/main cpp-6 amd64 6.3.0-18+deb9u1 [6584 kB] Get:60 http://deb.debian.org/debian/ stretch/main cpp amd64 4:6.3.0-4 [18.7 kB] Get:61 http://deb.debian.org/debian/ stretch/main dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:62 http://deb.debian.org/debian/ stretch/main libbsd0 amd64 0.8.3-1 [83.0 kB] Get:63 http://deb.debian.org/debian/ stretch/main libcloog-isl4 amd64 0.18.4-1+b1 [64.0 kB] Get:64 http://deb.debian.org/debian/ stretch/main libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:65 http://deb.debian.org/debian/ stretch/main libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:66 http://deb.debian.org/debian/ stretch/main libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:67 http://deb.debian.org/debian/ stretch/main libltdl7 amd64 2.4.6-2 [389 kB] Get:68 http://deb.debian.org/debian/ stretch/main libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:69 http://deb.debian.org/debian/ stretch/main libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:70 http://deb.debian.org/debian/ stretch/main libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:71 http://deb.debian.org/debian/ stretch/main libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:72 http://deb.debian.org/debian/ stretch/main xml-core all 0.17 [23.2 kB] Get:73 http://deb.debian.org/debian/ stretch/main gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] Get:74 http://deb.debian.org/debian/ stretch/main gromacs amd64 2016.1-2 [234 kB] Get:75 http://deb.debian.org/debian/ stretch/main gromacs-data all 2016.1-2 [22.1 MB] Get:76 http://deb.debian.org/debian/ stretch/main libhwloc5 amd64 1.11.5-1 [105 kB] Get:77 http://deb.debian.org/debian/ stretch/main libgromacs2 amd64 2016.1-2 [11.3 MB] Get:78 http://deb.debian.org/debian/ stretch/main ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:79 http://deb.debian.org/debian/ stretch/main libhwloc-plugins amd64 1.11.5-1 [16.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 73.5 MB in 39s (1851 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8958 files and directories currently installed.) Preparing to unpack .../libc6_2.24-11+deb9u4_amd64.deb ... Unpacking libc6:amd64 (2.24-11+deb9u4) over (2.19-18+deb8u10) ... Setting up libc6:amd64 (2.24-11+deb9u4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8957 files and directories currently installed.) Preparing to unpack .../gcc-6-base_6.3.0-18+deb9u1_amd64.deb ... Unpacking gcc-6-base:amd64 (6.3.0-18+deb9u1) ... Setting up gcc-6-base:amd64 (6.3.0-18+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8964 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6.3.0-18+deb9u1_amd64.deb ... Unpacking libgcc1:amd64 (1:6.3.0-18+deb9u1) over (1:4.9.2-10+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libgcc1:amd64 (1:6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libfdisk1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8964 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8970 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.9_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59.9) over (2.88dsf-59) ... Replacing files in old package initscripts (2.88dsf-59) ... Selecting previously unselected package init-system-helpers. Preparing to unpack .../init-system-helpers_1.48_all.deb ... Unpacking init-system-helpers (1.48) ... Replacing files in old package sysv-rc (2.88dsf-59) ... Setting up init-system-helpers (1.48) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8974 files and directories currently installed.) Preparing to unpack .../util-linux_2.29.2-1+deb9u1_amd64.deb ... Unpacking util-linux (2.29.2-1+deb9u1) over (2.25.2-6) ... Replacing files in old package initscripts (2.88dsf-59) ... Setting up util-linux (2.29.2-1+deb9u1) ... Installing new version of config file /etc/init.d/hwclock.sh ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9005 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.9_amd64.deb ... Unpacking initscripts (2.88dsf-59.9) over (2.88dsf-59) ... Setting up sysvinit-utils (2.88dsf-59.9) ... Setting up initscripts (2.88dsf-59.9) ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/umountfs ... Installing new version of config file /etc/init.d/umountroot ... Installing new version of config file /etc/default/rcS ... Installing new version of config file /etc/default/tmpfs ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9005 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.9_all.deb ... Unpacking sysv-rc (2.88dsf-59.9) over (2.88dsf-59) ... Setting up sysv-rc (2.88dsf-59.9) ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9003 files and directories currently installed.) Preparing to unpack .../libtext-charwidth-perl_0.04-7+b5_amd64.deb ... Unpacking libtext-charwidth-perl (0.04-7+b5) over (0.04-7+b3) ... Preparing to unpack .../libtext-iconv-perl_1.7-5+b4_amd64.deb ... Unpacking libtext-iconv-perl (1.7-5+b4) over (1.7-5+b2) ... Preparing to unpack .../perl-base_5.24.1-3+deb9u7_amd64.deb ... Unpacking perl-base (5.24.1-3+deb9u7) over (5.20.2-3+deb8u11) ... Setting up perl-base (5.24.1-3+deb9u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9062 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-3+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b1) over (1.05-8+b1) ... Preparing to unpack .../archives/init_1.48_amd64.deb ... Unpacking init (1.48) over (1.22) ... Setting up init (1.48) ... Selecting previously unselected package liblz4-1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9060 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2+b1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9066 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.3.0-18+deb9u1_amd64.deb ... Unpacking libstdc++6:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libstdc++6:amd64 (6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9067 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.10_amd64.deb ... Unpacking apt (1.4.10) over (1.0.9.8.4) ... Selecting previously unselected package libapt-pkg5.0:amd64. Preparing to unpack .../libapt-pkg5.0_1.4.10_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libapt-pkg5.0:amd64 (1.4.10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9122 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.11.0-3+deb9u2_amd64.deb ... Unpacking libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libidn11:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9128 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-1+deb9u1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libip4tc0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9134 files and directories currently installed.) Preparing to unpack .../libip4tc0_1.6.0+snapshot20161117-6_amd64.deb ... Unpacking libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9140 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2.1+deb9u1_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9146 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u12_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u12) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libudev1:amd64 (232-25+deb9u12) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9145 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u12_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u12) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libsystemd0:amd64 (232-25+deb9u12) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: considering deconfiguration of systemd, which would be broken by installation of udev ... dpkg: yes, will deconfigure systemd (broken by udev) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9145 files and directories currently installed.) Preparing to unpack .../udev_232-25+deb9u12_amd64.deb ... De-configuring systemd (215-17+deb8u7) ... Unpacking udev (232-25+deb9u12) over (215-17+deb8u7) ... Replacing files in old package systemd (215-17+deb8u7) ... dpkg: warning: unable to delete old directory '/etc/modprobe.d': Directory not empty Preparing to unpack .../systemd_232-25+deb9u12_amd64.deb ... Unpacking systemd (232-25+deb9u12) over (215-17+deb8u7) ... Setting up systemd (232-25+deb9u12) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/timesyncd.conf ... Installing new version of config file /etc/systemd/user.conf ... Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service. addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.machine1.conf ... Removing obsolete conffile /etc/systemd/bootchart.conf ... Selecting previously unselected package libprocps6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9206 files and directories currently installed.) Preparing to unpack .../libprocps6_2%3a3.3.12-3+deb9u1_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9213 files and directories currently installed.) Preparing to unpack .../procps_2%3a3.3.12-3+deb9u1_amd64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-3+deb9u1) over (2:3.3.9-9+deb8u1) ... Setting up procps (2:3.3.12-3+deb9u1) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Processing triggers for systemd (232-25+deb9u12) ... Selecting previously unselected package libcap-ng0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9215 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.7-3+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.7-3+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcap-ng0:amd64 (0.7.7-3+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9222 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.6.7-2_amd64.deb ... Unpacking libaudit1:amd64 (1:2.6.7-2) over (1:2.4-1+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libaudit1:amd64 (1:2.6.7-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9221 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.137-2_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Preparing to unpack .../dmsetup_2%3a1.02.137-2_amd64.deb ... Unpacking dmsetup (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.137-2) ... Setting up dmsetup (2:1.02.137-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9225 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.3-4_amd64.deb ... Unpacking libcryptsetup4:amd64 (2:1.7.3-4) over (2:1.6.6-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcryptsetup4:amd64 (2:1.7.3-4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package sgml-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9225 files and directories currently installed.) Preparing to unpack .../sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../libassuan0_2.4.3-2_amd64.deb ... Unpacking libassuan0:amd64 (2.4.3-2) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../pinentry-curses_1.0.0-2_amd64.deb ... Unpacking pinentry-curses (1.0.0-2) ... Selecting previously unselected package libnpth0:amd64. Preparing to unpack .../libnpth0_1.3-1_amd64.deb ... Unpacking libnpth0:amd64 (1.3-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Selecting previously unselected package gnupg-agent. Preparing to unpack .../gnupg-agent_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg-agent (2.1.18-8~deb9u4) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../libksba8_1.3.5-2_amd64.deb ... Unpacking libksba8:amd64 (1.3.5-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.16.2-5+deb9u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Preparing to unpack .../gnupg_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg (2.1.18-8~deb9u4) over (1.4.18-7+deb8u5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libnpth0:amd64 (1.3-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up gnupg-agent (2.1.18-8~deb9u4) ... Setting up libksba8:amd64 (1.3.5-2) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up gnupg (2.1.18-8~deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libssl1.1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9317 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.0l-1~deb9u1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../libnettle6_3.3-1+b2_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+b2) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../libhogweed4_3.3-1+b2_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+b2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.2.1-6_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-6) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.23.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.10-1.1+deb9u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Selecting previously unselected package libgnutls30:amd64. Preparing to unpack .../libgnutls30_3.5.8-5+deb9u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u5) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../libldap-common_2.4.44+dfsg-5+deb9u4_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.44+dfsg-5+deb9u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../libicu57_57.1-6+deb9u4_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.4+dfsg1-2.2+deb9u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Selecting previously unselected package manpages. Preparing to unpack .../manpages_4.10-2_all.deb ... Unpacking manpages (4.10-2) ... Selecting previously unselected package libisl15:amd64. Preparing to unpack .../libisl15_0.18-1_amd64.deb ... Unpacking libisl15:amd64 (0.18-1) ... Selecting previously unselected package cpp-6. Preparing to unpack .../cpp-6_6.3.0-18+deb9u1_amd64.deb ... Unpacking cpp-6 (6.3.0-18+deb9u1) ... Preparing to unpack .../cpp_4%3a6.3.0-4_amd64.deb ... Unpacking cpp (4:6.3.0-4) over (4:4.9.2-2) ... Selecting previously unselected package dirmngr. Preparing to unpack .../dirmngr_2.1.18-8~deb9u4_amd64.deb ... Unpacking dirmngr (2.1.18-8~deb9u4) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Preparing to unpack .../libcloog-isl4_0.18.4-1+b1_amd64.deb ... Unpacking libcloog-isl4:amd64 (0.18.4-1+b1) over (0.18.2-1+b2) ... Preparing to unpack .../libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgomp1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgomp1:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../libltdl7_2.4.6-2_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-2) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../libnuma1_2.0.11-2.1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.11-2.1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../libpciaccess0_0.13.4-1+b2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.13.4-1+b2) ... Selecting previously unselected package libsasl2-modules:amd64. Preparing to unpack .../libsasl2-modules_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Preparing to unpack .../libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) over (1:1.1.1-1+b1) ... Selecting previously unselected package xml-core. Preparing to unpack .../archives/xml-core_0.17_all.deb ... Unpacking xml-core (0.17) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../gnupg-l10n_2.1.18-8~deb9u4_all.deb ... Unpacking gnupg-l10n (2.1.18-8~deb9u4) ... Preparing to unpack .../gromacs_2016.1-2_amd64.deb ... Unpacking gromacs (2016.1-2) over (5.0.2-1) ... Preparing to unpack .../gromacs-data_2016.1-2_all.deb ... Unpacking gromacs-data (2016.1-2) over (5.0.2-1) ... Selecting previously unselected package libhwloc5:amd64. Preparing to unpack .../libhwloc5_1.11.5-1_amd64.deb ... Unpacking libhwloc5:amd64 (1.11.5-1) ... Selecting previously unselected package libgromacs2. Preparing to unpack .../libgromacs2_2016.1-2_amd64.deb ... Unpacking libgromacs2 (2016.1-2) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../ocl-icd-libopencl1_2.2.11-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../libhwloc-plugins_1.11.5-1_amd64.deb ... Unpacking libhwloc-plugins (1.11.5-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libtext-charwidth-perl (0.04-7+b5) ... Setting up libtext-iconv-perl (1.7-5+b4) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up apt (1.4.10) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Created symlink /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer → /lib/systemd/system/apt-daily-upgrade.timer. Created symlink /etc/systemd/system/timers.target.wants/apt-daily.timer → /lib/systemd/system/apt-daily.timer. Removing obsolete conffile /etc/cron.daily/apt ... Setting up udev (232-25+deb9u12) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udevmonitor.conf ... Installing new version of config file /etc/udev/udev.conf ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. Removing obsolete conffile /etc/init.d/udev-finish ... Removing obsolete conffile /etc/init/udev-finish.conf ... Removing obsolete conffile /etc/init/udev-fallback-graphics.conf ... Removing obsolete conffile /etc/modprobe.d/fbdev-blacklist.conf ... Setting up sgml-base (1.29) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up manpages (4.10-2) ... Setting up libisl15:amd64 (0.18-1) ... Setting up cpp-6 (6.3.0-18+deb9u1) ... Setting up cpp (4:6.3.0-4) ... Setting up dirmngr (2.1.18-8~deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libcloog-isl4:amd64 (0.18.4-1+b1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up gnupg-l10n (2.1.18-8~deb9u4) ... Setting up gromacs-data (2016.1-2) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libgromacs2 (2016.1-2) ... Setting up gromacs (2016.1-2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up libhwloc-plugins (1.11.5-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for systemd (232-25+deb9u12) ... Processing triggers for sgml-base (1.29) ... 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-yf', 'dist-upgrade'] 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m27.5s DUMP: 660e5103244a20b75ca08c3f8741e16e - 1m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'show', '--no-all-versions', 'gromacs'] 1m27.7s DUMP: Package: gromacs Version: 2016.1-2 Installed-Size: 823 Maintainer: Debichem Team Architecture: amd64 Depends: gromacs-data (= 2016.1-2), libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgromacs2, libstdc++6 (>= 5.2), libx11-6 Recommends: cpp Suggests: pymol Description-en: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. Description-md5: 6d908e4fc9e5c66b95da44191b20d095 Homepage: http://www.gromacs.org/ Tag: field::biology, field::biology:structural, field::chemistry, implemented-in::c, interface::commandline, interface::graphical, interface::x11, role::program, uitoolkit::xlib, x11::application Section: science Priority: extra Filename: pool/main/g/gromacs/gromacs_2016.1-2_amd64.deb Size: 233970 MD5sum: cc0e425686804bca907b99397490d8fc SHA256: 1b84466a227029afdc61594899b23ca81280a46a1f8e6f15aca8403e7850ce4c 1m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'show', '--no-all-versions', 'gromacs'] 1m27.7s INFO: apt-cache knows about the following packages: gromacs 1m27.7s INFO: Running scripts pre_install 1m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_database-server'] 1m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_database-server'] 1m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_exceptions'] 1m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_exceptions'] 1m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_extras'] 1m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_extras'] 1m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture'] 1m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture'] 1m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy'] 1m27.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy'] 1m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy', 'gromacs'] 1m27.9s DUMP: gromacs: Installed: 2016.1-2 Candidate: 2016.1-2 Version table: *** 2016.1-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 1m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy', 'gromacs'] 1m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-y', 'install', 'gromacs'] 1m28.1s DUMP: Reading package lists... Building dependency tree... Reading state information... gromacs is already the newest version (2016.1-2). The following packages were automatically installed and are no longer required: cpp-4.9 libcloog-isl4 libisl10 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-y', 'install', 'gromacs'] 1m28.1s INFO: Running scripts post_install 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_install_exceptions'] 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_install_exceptions'] 1m28.1s INFO: Running scripts post_distupgrade 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_exceptions'] 1m28.2s DUMP: mode of '/usr/share/man/sl' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man1' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man8' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) 1m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_exceptions'] 1m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_zz_backports'] 1m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_distupgrade_zz_backports'] 1m28.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m28.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m28.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m29.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m29.6s INFO: Running scripts pre_install 1m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_database-server'] 1m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_database-server'] 1m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_exceptions'] 1m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_exceptions'] 1m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_extras'] 1m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_extras'] 1m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture'] 1m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture'] 1m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy'] 1m29.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy'] 1m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy', 'gromacs'] 1m29.8s DUMP: gromacs: Installed: 2016.1-2 Candidate: 2016.1-2 Version table: *** 2016.1-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 1m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-cache', 'policy', 'gromacs'] 1m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-y', 'install', 'gromacs=2016.1-2'] 1m30.1s DUMP: Reading package lists... Building dependency tree... Reading state information... gromacs is already the newest version (2016.1-2). The following packages were automatically installed and are no longer required: cpp-4.9 libcloog-isl4 libisl10 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', '-y', 'install', 'gromacs=2016.1-2'] 1m30.1s INFO: Running scripts post_install 1m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_install_exceptions'] 1m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_install_exceptions'] 1m30.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m31.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m32.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpe789smlk', '-ac', '--ignore-obsolete'] 1m34.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpe789smlk', '-ac', '--ignore-obsolete'] 1m34.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m34.7s DUMP: 0.15.6 1m34.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m34.7s INFO: Running adequate version 0.15.6 now. 1m34.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'gromacs'] 1m34.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'gromacs'] 1m34.9s INFO: Running scripts pre_remove 1m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_exceptions'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/pre_remove_exceptions'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m38.7s DUMP: install ok installed acl acl 2.2.52-3+b1 install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed cpp cpp 4:6.3.0-4 install ok installed cpp-4.9 cpp-4.9 4.9.2-10+deb8u1 install ok installed cpp-6 cpp-6 6.3.0-18+deb9u1 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debconf-i18n debconf-i18n 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dirmngr dirmngr 2.1.18-8~deb9u4 install ok installed dmsetup dmsetup 2:1.02.137-2 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gnupg gnupg 2.1.18-8~deb9u4 install ok installed gnupg-agent gnupg-agent 2.1.18-8~deb9u4 install ok installed gnupg-l10n gnupg-l10n 2.1.18-8~deb9u4 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gromacs gromacs 2016.1-2 install ok installed gromacs-data gromacs-data 2016.1-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init init 1.48 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed initscripts initscripts 2.88dsf-59.9 install ok installed insserv insserv 1.14.0-5.4+b1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapparmor1:amd64 libapparmor1 2.11.0-3+deb9u2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libassuan0:amd64 libassuan0 2.4.3-2 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3 libblas3 3.7.0-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcap2:amd64 libcap2 1:2.25-1 install ok installed libcap2-bin libcap2-bin 1:2.25-1 install ok installed libcloog-isl4:amd64 libcloog-isl4 0.18.4-1+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.7.3-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.137-2 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.5-3 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.5-3 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u5 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgromacs2 libgromacs2 2016.1-2 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+b2 install ok installed libhwloc-plugins libhwloc-plugins 1.11.5-1 install ok installed libhwloc5:amd64 libhwloc5 1.11.5-1 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libip4tc0:amd64 libip4tc0 1.6.0+snapshot20161117-6 install ok installed libisl10:amd64 libisl10 0.12.2-2 install ok installed libisl15:amd64 libisl15 0.18-1 install ok installed libkmod2:amd64 libkmod2 23-2 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed liblapack3 liblapack3 3.7.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u4 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u4 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b1 install ok installed libltdl7:amd64 libltdl7 2.4.6-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libmpc3:amd64 libmpc3 1.0.3-1+b2 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnettle6:amd64 libnettle6 3.3-1+b2 install ok installed libnpth0:amd64 libnpth0 1.3-1 install ok installed libnuma1:amd64 libnuma1 2.0.11-2.1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.4-1+b2 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libseccomp2:amd64 libseccomp2 2.3.1-2.1+deb9u1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libslang2:amd64 libslang2 2.3.1-5 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b5 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7.1 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-30 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u1 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u2 install ok installed login login 1:4.4-4.1 install ok installed lsb-base lsb-base 9.20161125 install ok installed manpages manpages 4.10-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.11-1 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed pinentry-curses pinentry-curses 1.0.0-2 install ok installed procps procps 2:3.3.12-3+deb9u1 install ok installed readline-common readline-common 7.0-3 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sgml-base sgml-base 1.29 install ok installed startpar startpar 0.59-3.1 install ok installed systemd systemd 232-25+deb9u12 install ok installed systemd-sysv systemd-sysv 232-25+deb9u12 install ok installed sysv-rc sysv-rc 2.88dsf-59.9 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed tzdata tzdata 2020a-0+deb9u1 install ok installed udev udev 232-25+deb9u12 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed xml-core xml-core 0.17 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', 'remove', 'cpp', 'cpp-4.9', 'cpp-6', 'gnupg', 'gnupg-agent', 'gromacs-data', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcloog-isl4:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs2', 'libhwloc-plugins', 'libhwloc5:amd64', 'libicu57:amd64', 'libisl10:amd64', 'libisl15:amd64', 'liblapack3', 'libltdl7:amd64', 'libmpc3:amd64', 'libmpfr4:amd64', 'libnuma1:amd64', 'libpciaccess0:amd64', 'libprocps3:amd64', 'libquadmath0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml2:amd64', 'ocl-icd-libopencl1:amd64', 'pinentry-curses', 'sgml-base', 'xml-core', 'gromacs'] 1m40.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: dirmngr gnupg-l10n libassuan0 libffi6 libgmp10 libgnutls30 libhogweed4 libksba8 libldap-2.4-2 libldap-common libnettle6 libnpth0 libp11-kit0 libreadline7 libsasl2-2 libsasl2-modules libsasl2-modules-db libsqlite3-0 libssl1.1 libtasn1-6 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: cpp cpp-4.9 cpp-6 gnupg gnupg-agent gromacs gromacs-data libblas-common libblas3 libbsd0 libcloog-isl4 libfftw3-double3 libfftw3-single3 libgfortran3 libgomp1 libgromacs2 libhwloc-plugins libhwloc5 libicu57 libisl10 libisl15 liblapack3 libltdl7 libmpc3 libmpfr4 libnuma1 libpciaccess0 libprocps3 libquadmath0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 ocl-icd-libopencl1 pinentry-curses sgml-base xml-core 0 upgraded, 0 newly installed, 39 to remove and 0 not upgraded. After this operation, 247 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26514 files and directories currently installed.) Removing cpp (4:6.3.0-4) ... Removing cpp-4.9 (4.9.2-10+deb8u1) ... Removing cpp-6 (6.3.0-18+deb9u1) ... Removing gnupg (2.1.18-8~deb9u4) ... Removing gnupg-agent (2.1.18-8~deb9u4) ... Removing gromacs (2016.1-2) ... Removing gromacs-data (2016.1-2) ... Removing libgromacs2 (2016.1-2) ... Removing liblapack3 (3.7.0-2) ... Removing libblas3 (3.7.0-2) ... Removing libblas-common (3.7.0-2) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1) ... Removing libcloog-isl4:amd64 (0.18.4-1+b1) ... Removing libfftw3-double3:amd64 (3.3.5-3) ... Removing libfftw3-single3:amd64 (3.3.5-3) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libhwloc-plugins (1.11.5-1) ... Removing libhwloc5:amd64 (1.11.5-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libisl10:amd64 (0.12.2-2) ... Removing libisl15:amd64 (0.18-1) ... Removing libltdl7:amd64 (2.4.6-2) ... Removing libmpc3:amd64 (1.0.3-1+b2) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libnuma1:amd64 (2.0.11-2.1) ... Removing libpciaccess0:amd64 (0.13.4-1+b2) ... Removing libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing libx11-data (2:1.6.4-3+deb9u1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing ocl-icd-libopencl1:amd64 (2.2.11-1) ... Removing pinentry-curses (1.0.0-2) ... Removing xml-core (0.17) ... Removing sgml-base (1.29) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 1m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', 'remove', 'cpp', 'cpp-4.9', 'cpp-6', 'gnupg', 'gnupg-agent', 'gromacs-data', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcloog-isl4:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs2', 'libhwloc-plugins', 'libhwloc5:amd64', 'libicu57:amd64', 'libisl10:amd64', 'libisl15:amd64', 'liblapack3', 'libltdl7:amd64', 'libmpc3:amd64', 'libmpfr4:amd64', 'libnuma1:amd64', 'libpciaccess0:amd64', 'libprocps3:amd64', 'libquadmath0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml2:amd64', 'ocl-icd-libopencl1:amd64', 'pinentry-curses', 'sgml-base', 'xml-core', 'gromacs'] 1m40.0s INFO: Running scripts post_remove 1m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_remove_exceptions'] 1m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_remove_exceptions'] 1m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg', '--purge', 'cpp', 'cpp-4.9', 'cpp-6', 'gnupg', 'gnupg-agent', 'gromacs-data', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcloog-isl4:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs2', 'libhwloc-plugins', 'libhwloc5:amd64', 'libicu57:amd64', 'libisl10:amd64', 'libisl15:amd64', 'liblapack3', 'libltdl7:amd64', 'libmpc3:amd64', 'libmpfr4:amd64', 'libnuma1:amd64', 'libpciaccess0:amd64', 'libprocps3:amd64', 'libquadmath0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml2:amd64', 'ocl-icd-libopencl1:amd64', 'pinentry-curses', 'sgml-base', 'xml-core'] 1m40.1s DUMP: dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-4.9 which isn't installed dpkg: warning: ignoring request to remove cpp-6 which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed (Reading database ... 8182 files and directories currently installed.) Purging configuration files for gnupg-agent (2.1.18-8~deb9u4) ... dpkg: warning: ignoring request to remove gromacs-data which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcloog-isl4 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgromacs2 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed Purging configuration files for libisl10:amd64 (0.12.2-2) ... dpkg: warning: ignoring request to remove libisl15 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr4 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed Purging configuration files for libprocps3:amd64 (2:3.3.9-9+deb8u1) ... dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for sgml-base (1.29) ... Purging configuration files for xml-core (0.17) ... 1m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg', '--purge', 'cpp', 'cpp-4.9', 'cpp-6', 'gnupg', 'gnupg-agent', 'gromacs-data', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcloog-isl4:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs2', 'libhwloc-plugins', 'libhwloc5:amd64', 'libicu57:amd64', 'libisl10:amd64', 'libisl15:amd64', 'liblapack3', 'libltdl7:amd64', 'libmpc3:amd64', 'libmpfr4:amd64', 'libnuma1:amd64', 'libpciaccess0:amd64', 'libprocps3:amd64', 'libquadmath0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml2:amd64', 'ocl-icd-libopencl1:amd64', 'pinentry-curses', 'sgml-base', 'xml-core'] 1m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg', '--purge', 'gromacs'] 1m40.1s DUMP: dpkg: warning: ignoring request to remove gromacs which isn't installed 1m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg', '--purge', 'gromacs'] 1m40.1s INFO: Running scripts post_purge 1m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_purge_exceptions'] 1m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_purge_exceptions'] 1m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg', '--purge', '--pending'] 1m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg', '--purge', '--pending'] 1m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg', '--remove', '--pending'] 1m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg', '--remove', '--pending'] 1m40.1s INFO: Running scripts post_test 1m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_test_exceptions'] 1m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'tmp/scripts/post_test_exceptions'] 1m40.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m40.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg-divert', '--list'] 1m40.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'dpkg-divert', '--list'] 1m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', 'clean'] 1m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe789smlk', 'apt-get', 'clean'] 1m40.5s DEBUG: Recording chroot state 1m41.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/shm'] 1m41.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/shm'] 1m41.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/console'] 1m41.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/console'] 1m41.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/ptmx'] 1m41.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/ptmx'] 1m41.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/pts'] 1m41.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/dev/pts'] 1m41.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/proc'] 1m41.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe789smlk/proc'] 1m41.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m41.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe789smlk'] 1m41.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpe789smlk 1m41.4s INFO: PASS: Upgrading between Debian distributions. 1m41.4s INFO: PASS: All tests. 1m41.4s INFO: piuparts run ends. ret=0 End: 2022-10-30 01:09:57 GMT