Start: 2022-11-17 16:21:48 GMT [jessie] Package: libbio-graphics-perl Version: 2.39-2 Installed-Size: 1686 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, bioperl, libgd-gd2-perl Recommends: libbio-scf-perl, libgd-svg-perl, libstatistics-descriptive-perl Description: Generate GD images of Bio::Seq objects Homepage: http://search.cpan.org/dist/Bio-Graphics/ Description-md5: 4c1e302f07a2493ac85971b05ef00176 Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::perl, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-graphics-perl/libbio-graphics-perl_2.39-2_all.deb Size: 605646 MD5sum: 30481823ff79a27084bb9b7518a6a7bc SHA1: 4c99e89efca6ffc33e010475c60b188de2173785 SHA256: a9c9ba044f53a1fd2b931a4ad4f93a5861651e1d1948b30c965d8604ec5c5e6a [stretch] Package: libbio-graphics-perl Version: 2.40-1 Installed-Size: 1773 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, bioperl, libgd-gd2-perl Recommends: libbio-scf-perl, libgd-svg-perl, libstatistics-descriptive-perl Description: Generate GD images of Bio::Seq objects Homepage: http://search.cpan.org/dist/Bio-Graphics/ Description-md5: 4c1e302f07a2493ac85971b05ef00176 Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::perl, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-graphics-perl/libbio-graphics-perl_2.40-1_all.deb Size: 611214 MD5sum: 32bbd008cf0597d007f023d25aabf9a2 SHA256: 3c8762debb178b713df7bc151a4b3d2fb755618910e83db89d8181a86e48f8c8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt libbio-graphics-perl=2.40-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt libbio-graphics-perl=2.40-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2dgqrx66 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2dgqrx66 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2dgqrx66/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', 'update'] 0m3.3s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s INFO: Running scripts post_setup 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_dummy_users'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_dummy_users'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat 0m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 0m4.8s INFO: Running scripts is_testable 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s INFO: Running scripts pre_test 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_test_root_password'] 0m4.9s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_test_root_password'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'show', '--no-all-versions', 'libbio-graphics-perl'] 0m4.9s DUMP: Package: libbio-graphics-perl Version: 2.39-2 Installed-Size: 1686 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, bioperl, libgd-gd2-perl Recommends: libbio-scf-perl, libgd-svg-perl, libstatistics-descriptive-perl Description-en: Generate GD images of Bio::Seq objects The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature, Das::Segment::Feature and Bio::DB::Graphics objects. It can be used to draw sequence annotations, physical (contig) maps, protein domains, or any other type of map in which a set of discrete ranges need to be laid out on the number line. Description-md5: 4c1e302f07a2493ac85971b05ef00176 Homepage: http://search.cpan.org/dist/Bio-Graphics/ Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::perl, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-graphics-perl/libbio-graphics-perl_2.39-2_all.deb Size: 605646 MD5sum: 30481823ff79a27084bb9b7518a6a7bc SHA1: 4c99e89efca6ffc33e010475c60b188de2173785 SHA256: a9c9ba044f53a1fd2b931a4ad4f93a5861651e1d1948b30c965d8604ec5c5e6a 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'show', '--no-all-versions', 'libbio-graphics-perl'] 0m4.9s INFO: apt-cache knows about the following packages: libbio-graphics-perl 0m4.9s INFO: Running scripts pre_install 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy'] 0m5.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy', 'libbio-graphics-perl'] 0m5.0s DUMP: libbio-graphics-perl: Installed: (none) Candidate: 2.39-2 Version table: 2.39-2 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy', 'libbio-graphics-perl'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-y', 'install', 'libbio-graphics-perl'] 0m47.6s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: amap-align apache2-bin bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation ghostscript graphviz gsfonts hmmer ifupdown infernal iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap-ng0 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdns-export100 libencode-locale-perl liberror-perl libexpat1 libexporter-tiny-perl libfcgi-perl libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libperl5.20 libpixman-1-0 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl librole-tiny-perl librtmp1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsm6 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf wise wise-data x11-common xdg-user-dirs xml-core Suggested packages: www-browser apache2-doc apache2-suexec-pristine apache2-suexec-custom filo groff-base gmap paml phylip libvibrant6b ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 bowtie-examples clustalx seaview dbus-x11 emboss-doc emboss-test embassy ghostscript-x graphviz-doc hmmer-doc ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd apache2 lighttpd httpd libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gnutls-bin krb5-doc krb5-user libdata-dump-perl libhtml-element-extended-perl libjasper-runtime liblcms2-utils libmime-base64-perl uuid libscalar-number-perl libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libmime-lite-perl libnet-jabber-perl libdevel-stacktrace-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl mustang-testdata libterm-readline-gnu-perl libterm-readline-perl-perl make man-browser groff libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python-doc python-tk python2.7-doc binutils binfmt-support ri ruby-dev bundler sgml-base-doc boxshade t-coffee-examples fsa pymol rasmol wise-doc debhelper Recommended packages: libgd-gd2-perl libstorable-perl libarchive-tar-perl The following NEW packages will be installed: amap-align apache2-bin bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation ghostscript graphviz gsfonts hmmer ifupdown infernal iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap-ng0 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdns-export100 libencode-locale-perl liberror-perl libexpat1 libexporter-tiny-perl libfcgi-perl libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libperl5.20 libpixman-1-0 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl librole-tiny-perl librtmp1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsm6 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf wise wise-data x11-common xdg-user-dirs xml-core 0 upgraded, 363 newly installed, 0 to remove and 0 not upgraded. Need to get 186 MB of archives. After this operation, 961 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:3 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:4 http://deb.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:5 http://deb.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:6 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:7 http://deb.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:8 http://deb.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:9 http://deb.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:10 http://deb.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:11 http://deb.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:12 http://deb.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:13 http://deb.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:14 http://deb.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:15 http://deb.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:16 http://deb.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:17 http://deb.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:18 http://deb.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:19 http://deb.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u4 [250 kB] Get:20 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:21 http://deb.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:22 http://deb.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:23 http://deb.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:24 http://deb.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:25 http://deb.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:26 http://deb.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:27 http://deb.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:28 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:29 http://deb.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:30 http://deb.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:31 http://deb.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:32 http://deb.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:33 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:34 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:35 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:36 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:37 http://deb.debian.org/debian/ jessie/main fonts-liberation all 1.07.4-1 [835 kB] Get:38 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:39 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:40 http://deb.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:41 http://deb.debian.org/debian/ jessie/main fonts-droid all 1:4.4.4r2-6 [3729 kB] Get:42 http://deb.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:43 http://deb.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:44 http://deb.debian.org/debian/ jessie/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:45 http://deb.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:46 http://deb.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:47 http://deb.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:48 http://deb.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:49 http://deb.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:50 http://deb.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:51 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:52 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:53 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:54 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:55 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:56 http://deb.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:57 http://deb.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:58 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:59 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:60 http://deb.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:61 http://deb.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:62 http://deb.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:63 http://deb.debian.org/debian/ jessie/main libcupsimage2 amd64 1.7.5-11+deb8u2 [117 kB] Get:64 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:65 http://deb.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:66 http://deb.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:67 http://deb.debian.org/debian/ jessie/main libcupsfilters1 amd64 1.0.61-5+deb8u3 [106 kB] Get:68 http://deb.debian.org/debian/ jessie/main librtmp1 amd64 2.4+20150115.gita107cef-1+deb8u1 [60.0 kB] Get:69 http://deb.debian.org/debian/ jessie/main libssh2-1 amd64 1.4.3-4.1+deb8u1 [125 kB] Get:70 http://deb.debian.org/debian/ jessie/main libcurl3-gnutls amd64 7.38.0-4+deb8u11 [253 kB] Get:71 http://deb.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:72 http://deb.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:73 http://deb.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:74 http://deb.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:75 http://deb.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:76 http://deb.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:77 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:78 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:79 http://deb.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:80 http://deb.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:81 http://deb.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:82 http://deb.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:83 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:84 http://deb.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:85 http://deb.debian.org/debian/ jessie/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:86 http://deb.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:87 http://deb.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:88 http://deb.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:89 http://deb.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:90 http://deb.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:91 http://deb.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:92 http://deb.debian.org/debian/ jessie/main mysql-common all 5.5.60-0+deb8u1 [75.4 kB] Get:93 http://deb.debian.org/debian/ jessie/main libmysqlclient18 amd64 5.5.60-0+deb8u1 [671 kB] Get:94 http://deb.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:95 http://deb.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:96 http://deb.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:97 http://deb.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:98 http://deb.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:99 http://deb.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:100 http://deb.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:101 http://deb.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:102 http://deb.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:103 http://deb.debian.org/debian/ jessie/main libpq5 amd64 9.4.18-0+deb8u1 [128 kB] Get:104 http://deb.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:105 http://deb.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:106 http://deb.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:107 http://deb.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:108 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:109 http://deb.debian.org/debian/ jessie/main libxslt1.1 amd64 1.1.28-2+deb8u3 [232 kB] Get:110 http://deb.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:111 http://deb.debian.org/debian/ jessie/main poppler-data all 0.4.7-1 [1491 kB] Get:112 http://deb.debian.org/debian/ jessie/main sgml-base all 1.26+nmu4 [14.6 kB] Get:113 http://deb.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:114 http://deb.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:115 http://deb.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:116 http://deb.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:117 http://deb.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:118 http://deb.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:119 http://deb.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:120 http://deb.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u4 [60.5 kB] Get:121 http://deb.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:122 http://deb.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:123 http://deb.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:124 http://deb.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:125 http://deb.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u12 [1042 kB] Get:126 http://deb.debian.org/debian/ jessie/main bedtools amd64 2.21.0-1 [608 kB] Get:127 http://deb.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:128 http://deb.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:129 http://deb.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:130 http://deb.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:131 http://deb.debian.org/debian/ jessie/main libbio-perl-run-perl all 1.6.9-2 [753 kB] Get:132 http://deb.debian.org/debian/ jessie/main bioperl-run all 1.6.9-2 [44.0 kB] Get:133 http://deb.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:134 http://deb.debian.org/debian/ jessie/main bwa amd64 0.7.10-1 [169 kB] Get:135 http://deb.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:136 http://deb.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:137 http://deb.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:138 http://deb.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:139 http://deb.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:140 http://deb.debian.org/debian/ jessie/main dialign amd64 2.2.1-7 [135 kB] Get:141 http://deb.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:142 http://deb.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:143 http://deb.debian.org/debian/ jessie/main libhpdf-2.2.1 amd64 2.2.1-1.1 [322 kB] Get:144 http://deb.debian.org/debian/ jessie/main emboss-lib amd64 6.6.0+dfsg-1 [3102 kB] Get:145 http://deb.debian.org/debian/ jessie/main emboss-data all 6.6.0+dfsg-1 [60.8 MB] Get:146 http://deb.debian.org/debian/ jessie/main emboss amd64 6.6.0+dfsg-1 [1023 kB] Get:147 http://deb.debian.org/debian/ jessie/main exonerate amd64 2.2.0-6 [3053 kB] Get:148 http://deb.debian.org/debian/ jessie/main libjbig2dec0 amd64 0.13-4~deb8u2 [60.2 kB] Get:149 http://deb.debian.org/debian/ jessie/main libgs9-common all 9.06~dfsg-2+deb8u7 [1981 kB] Get:150 http://deb.debian.org/debian/ jessie/main libgs9 amd64 9.06~dfsg-2+deb8u7 [1918 kB] Get:151 http://deb.debian.org/debian/ jessie/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB] Get:152 http://deb.debian.org/debian/ jessie/main ghostscript amd64 9.06~dfsg-2+deb8u7 [85.1 kB] Get:153 http://deb.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:154 http://deb.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:155 http://deb.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:156 http://deb.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:157 http://deb.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:158 http://deb.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:159 http://deb.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:160 http://deb.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:161 http://deb.debian.org/debian/ jessie/main infernal amd64 1.1.1-2 [1862 kB] Get:162 http://deb.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:163 http://deb.debian.org/debian/ jessie/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:164 http://deb.debian.org/debian/ jessie/main liberror-perl all 0.17-1.1 [22.4 kB] Get:165 http://deb.debian.org/debian/ jessie/main libipc-sharelite-perl amd64 0.17-3+b2 [24.9 kB] Get:166 http://deb.debian.org/debian/ jessie/main libcache-cache-perl all 1.07-2 [76.2 kB] Get:167 http://deb.debian.org/debian/ jessie/main libace-perl amd64 1.92-3+b1 [310 kB] Get:168 http://deb.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:169 http://deb.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:170 http://deb.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:171 http://deb.debian.org/debian/ jessie/main libalgorithm-munkres-perl all 0.08-2 [12.5 kB] Get:172 http://deb.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u11 [1362 B] Get:173 http://deb.debian.org/debian/ jessie/main libdevel-symdump-perl all 2.12-1 [17.1 kB] Get:174 http://deb.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:175 http://deb.debian.org/debian/ jessie/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:176 http://deb.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:177 http://deb.debian.org/debian/ jessie/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:178 http://deb.debian.org/debian/ jessie/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:179 http://deb.debian.org/debian/ jessie/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:180 http://deb.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:181 http://deb.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:182 http://deb.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:183 http://deb.debian.org/debian/ jessie/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:184 http://deb.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:185 http://deb.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:186 http://deb.debian.org/debian/ jessie/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:187 http://deb.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:188 http://deb.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:189 http://deb.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:190 http://deb.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:191 http://deb.debian.org/debian/ jessie/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:192 http://deb.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:193 http://deb.debian.org/debian/ jessie/main libapache2-mod-perl2 amd64 2.0.9~1624218-2+deb8u2 [903 kB] Get:194 http://deb.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:195 http://deb.debian.org/debian/ jessie/main libapache-dbi-perl all 1.12-1 [54.6 kB] Get:196 http://deb.debian.org/debian/ jessie/main libapache2-reload-perl all 0.12-3 [17.3 kB] Get:197 http://deb.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:198 http://deb.debian.org/debian/ jessie/main libclass-method-modifiers-perl all 2.11-1 [18.5 kB] Get:199 http://deb.debian.org/debian/ jessie/main libsub-exporter-progressive-perl all 0.001011-1 [7748 B] Get:200 http://deb.debian.org/debian/ jessie/main libdevel-globaldestruction-perl all 0.13-1 [8676 B] Get:201 http://deb.debian.org/debian/ jessie/main libparams-classify-perl amd64 0.013-4+b2 [24.1 kB] Get:202 http://deb.debian.org/debian/ jessie/main libmodule-runtime-perl all 0.014-1 [17.9 kB] Get:203 http://deb.debian.org/debian/ jessie/main libimport-into-perl all 1.002004-1 [11.5 kB] Get:204 http://deb.debian.org/debian/ jessie/main librole-tiny-perl all 1.003004-1 [19.4 kB] Get:205 http://deb.debian.org/debian/ jessie/main libstrictures-perl all 1.005005-1 [13.5 kB] Get:206 http://deb.debian.org/debian/ jessie/main libmoo-perl all 1.006001-1 [62.7 kB] Get:207 http://deb.debian.org/debian/ jessie/main libexporter-tiny-perl all 0.038-2 [28.7 kB] Get:208 http://deb.debian.org/debian/ jessie/main libtype-tiny-perl all 1.000004-1 [269 kB] Get:209 http://deb.debian.org/debian/ jessie/main libarray-compare-perl all 2.11-1 [14.2 kB] Get:210 http://deb.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:211 http://deb.debian.org/debian/ jessie/main libb-hooks-op-check-perl amd64 0.19-2+b1 [11.3 kB] Get:212 http://deb.debian.org/debian/ jessie/main liblexical-sealrequirehints-perl amd64 0.007-1+b2 [14.4 kB] Get:213 http://deb.debian.org/debian/ jessie/main libbareword-filehandles-perl amd64 0.003-1+b2 [8922 B] Get:214 http://deb.debian.org/debian/ jessie/main libbio-asn1-entrezgene-perl all 1.700-1 [40.9 kB] Get:215 http://deb.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:216 http://deb.debian.org/debian/ jessie/main libbio-graphics-perl all 2.39-2 [606 kB] Get:217 http://deb.debian.org/debian/ jessie/main libstaden-read1 amd64 1.13.7-1 [260 kB] Get:218 http://deb.debian.org/debian/ jessie/main libbio-scf-perl amd64 1.03-2+b1 [21.3 kB] Get:219 http://deb.debian.org/debian/ jessie/main libcarp-clan-perl all 6.04-1 [15.8 kB] Get:220 http://deb.debian.org/debian/ jessie/main libbit-vector-perl amd64 7.3-1+b2 [146 kB] Get:221 http://deb.debian.org/debian/ jessie/main libbsd-resource-perl amd64 1.2907-1+b2 [33.1 kB] Get:222 http://deb.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:223 http://deb.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:224 http://deb.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:225 http://deb.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:226 http://deb.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:227 http://deb.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:228 http://deb.debian.org/debian/ jessie/main libclass-xsaccessor-perl amd64 1.19-2+b4 [39.0 kB] Get:229 http://deb.debian.org/debian/ jessie/main libclone-perl amd64 0.37-1+b1 [14.2 kB] Get:230 http://deb.debian.org/debian/ jessie/main libconvert-binary-c-perl amd64 0.76-3+b2 [274 kB] Get:231 http://deb.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:232 http://deb.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:233 http://deb.debian.org/debian/ jessie/main libcrypt-rc4-perl all 2.02-2 [8150 B] Get:234 http://deb.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:235 http://deb.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:236 http://deb.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:237 http://deb.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:238 http://deb.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:239 http://deb.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:240 http://deb.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:241 http://deb.debian.org/debian/ jessie/main libdate-calc-perl all 6.3-2 [194 kB] Get:242 http://deb.debian.org/debian/ jessie/main libdate-calc-xs-perl amd64 6.3-2 [54.0 kB] Get:243 http://deb.debian.org/debian/ jessie/main libdate-manip-perl all 6.47-1 [923 kB] Get:244 http://deb.debian.org/debian/ jessie/main libdbd-mysql-perl amd64 4.028-2+deb8u2 [119 kB] Get:245 http://deb.debian.org/debian/ jessie/main libdbd-pg-perl amd64 3.4.2-1 [203 kB] Get:246 http://deb.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:247 http://deb.debian.org/debian/ jessie/main libpadwalker-perl amd64 1.98-1+b1 [20.7 kB] Get:248 http://deb.debian.org/debian/ jessie/main libdevel-caller-perl amd64 2.06-1+b2 [12.7 kB] Get:249 http://deb.debian.org/debian/ jessie/main libdevel-lexalias-perl amd64 0.05-1+b2 [9686 B] Get:250 http://deb.debian.org/debian/ jessie/main libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:251 http://deb.debian.org/debian/ jessie/main libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:252 http://deb.debian.org/debian/ jessie/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:253 http://deb.debian.org/debian/ jessie/main libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:254 http://deb.debian.org/debian/ jessie/main libsvg-perl all 2.59-1 [75.2 kB] Get:255 http://deb.debian.org/debian/ jessie/main libgd-svg-perl all 0.33-1 [64.8 kB] Get:256 http://deb.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:257 http://deb.debian.org/debian/ jessie/main libheap-perl all 0.80-2 [43.0 kB] Get:258 http://deb.debian.org/debian/ jessie/main libgraph-perl all 1:0.96-1.1 [126 kB] Get:259 http://deb.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:260 http://deb.debian.org/debian/ jessie/main libipc-run-perl all 0.92-1+deb8u1 [101 kB] Get:261 http://deb.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:262 http://deb.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:263 http://deb.debian.org/debian/ jessie/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:264 http://deb.debian.org/debian/ jessie/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:265 http://deb.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:266 http://deb.debian.org/debian/ jessie/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:267 http://deb.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:268 http://deb.debian.org/debian/ jessie/main libhtml-tableextract-perl all 2.11-1 [32.0 kB] Get:269 http://deb.debian.org/debian/ jessie/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:270 http://deb.debian.org/debian/ jessie/main libindirect-perl amd64 0.33-1 [26.4 kB] Get:271 http://deb.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:272 http://deb.debian.org/debian/ jessie/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:273 http://deb.debian.org/debian/ jessie/main libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:274 http://deb.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:275 http://deb.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:276 http://deb.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:277 http://deb.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:278 http://deb.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:279 http://deb.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:280 http://deb.debian.org/debian/ jessie/main libmath-derivative-perl all 0.01-6 [6214 B] Get:281 http://deb.debian.org/debian/ jessie/main libmath-spline-perl all 0.02-1 [7992 B] Get:282 http://deb.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:283 http://deb.debian.org/debian/ jessie/main libmldbm-perl all 2.05-1 [18.3 kB] Get:284 http://deb.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:285 http://deb.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:286 http://deb.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:287 http://deb.debian.org/debian/ jessie/main libmultidimensional-perl amd64 0.010-1+b2 [8506 B] Get:288 http://deb.debian.org/debian/ jessie/main libole-storage-lite-perl all 0.19-1 [26.1 kB] Get:289 http://deb.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:290 http://deb.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:291 http://deb.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:292 http://deb.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:293 http://deb.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:294 http://deb.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:295 http://deb.debian.org/debian/ jessie/main libpostscript-perl all 0.06-2 [31.4 kB] Get:296 http://deb.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:297 http://deb.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:298 http://deb.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:299 http://deb.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:300 http://deb.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:301 http://deb.debian.org/debian/ jessie/main libsort-naturally-perl all 1.03-1 [13.9 kB] Get:302 http://deb.debian.org/debian/ jessie/main libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:303 http://deb.debian.org/debian/ jessie/main libunicode-map-perl amd64 0.112-11+b1 [146 kB] Get:304 http://deb.debian.org/debian/ jessie/main libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:305 http://deb.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:306 http://deb.debian.org/debian/ jessie/main libsub-name-perl amd64 0.12-1 [12.1 kB] Get:307 http://deb.debian.org/debian/ jessie/main libtree-dagnode-perl all 1.22-1 [59.5 kB] Get:308 http://deb.debian.org/debian/ jessie/main libsvg-graph-perl all 0.02-2 [130 kB] Get:309 http://deb.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:310 http://deb.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:311 http://deb.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:312 http://deb.debian.org/debian/ jessie/main libtype-tiny-xs-perl amd64 0.010-1 [27.1 kB] Get:313 http://deb.debian.org/debian/ jessie/main libxml-perl all 0.08-2 [113 kB] Get:314 http://deb.debian.org/debian/ jessie/main libxml-regexp-perl all 0.04-1 [8370 B] Get:315 http://deb.debian.org/debian/ jessie/main libxml-dom-perl all 1.44-1 [184 kB] Get:316 http://deb.debian.org/debian/ jessie/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:317 http://deb.debian.org/debian/ jessie/main libxml-dom-xpath-perl all 0.14-1 [9622 B] Get:318 http://deb.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:319 http://deb.debian.org/debian/ jessie/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:320 http://deb.debian.org/debian/ jessie/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:321 http://deb.debian.org/debian/ jessie/main libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:322 http://deb.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:323 http://deb.debian.org/debian/ jessie/main libxml-libxslt-perl amd64 1.92-1+b1 [47.7 kB] Get:324 http://deb.debian.org/debian/ jessie/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:325 http://deb.debian.org/debian/ jessie/main libxml-sax-writer-perl all 0.54-1 [23.4 kB] Get:326 http://deb.debian.org/debian/ jessie/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:327 http://deb.debian.org/debian/ jessie/main libxml-writer-perl all 0.625-1 [29.7 kB] Get:328 http://deb.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:329 http://deb.debian.org/debian/ jessie/main libyaml-libyaml-perl amd64 0.41-6 [67.0 kB] Get:330 http://deb.debian.org/debian/ jessie/main libyaml-perl all 1.13-1 [69.7 kB] Get:331 http://deb.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:332 http://deb.debian.org/debian/ jessie/main maq amd64 0.7.1-5 [321 kB] Get:333 http://deb.debian.org/debian/ jessie/main muscle amd64 1:3.8.31-1 [169 kB] Get:334 http://deb.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:335 http://deb.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:336 http://deb.debian.org/debian/ jessie/main perl-doc all 5.20.2-3+deb8u11 [7347 kB] Get:337 http://deb.debian.org/debian/ jessie/main perl-tk amd64 1:804.032-3+b3 [2031 kB] Get:338 http://deb.debian.org/debian/ jessie/main phyml amd64 2:20120412-2 [939 kB] Get:339 http://deb.debian.org/debian/ jessie/main poa amd64 2.0+20060928-3 [50.8 kB] Get:340 http://deb.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:341 http://deb.debian.org/debian/ jessie/main primer3 amd64 2.3.6-1 [168 kB] Get:342 http://deb.debian.org/debian/ jessie/main probalign amd64 1.4-3 [67.9 kB] Get:343 http://deb.debian.org/debian/ jessie/main probcons amd64 1.12-9 [196 kB] Get:344 http://deb.debian.org/debian/ jessie/main proda amd64 1.0-8 [58.3 kB] Get:345 http://deb.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:346 http://deb.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:347 http://deb.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:348 http://deb.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:349 http://deb.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:350 http://deb.debian.org/debian/ jessie/main samtools amd64 0.1.19-1 [563 kB] Get:351 http://deb.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:352 http://deb.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:353 http://deb.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:354 http://deb.debian.org/debian/ jessie/main tigr-glimmer amd64 3.02-3 [276 kB] Get:355 http://deb.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:356 http://deb.debian.org/debian/ jessie/main wise-data all 2.4.1-17 [108 kB] Get:357 http://deb.debian.org/debian/ jessie/main wise amd64 2.4.1-17 [961 kB] Get:358 http://deb.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:359 http://deb.debian.org/debian/ jessie/main xml-core all 0.13+nmu2 [24.2 kB] Get:360 http://deb.debian.org/debian/ jessie/main bowtie amd64 1.1.1-2 [1369 kB] Get:361 http://deb.debian.org/debian/ jessie/main libset-scalar-perl all 1.29-1 [35.3 kB] Get:362 http://deb.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:363 http://deb.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 186 MB in 4s (38.5 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-13.1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libgmp10:amd64. 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Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.8-6+deb8u7_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-5+b1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-5+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. 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Preparing to unpack .../libmagic1_1%3a5.22+15-2+deb8u4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u6_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Selecting previously unselected package perl-modules. Preparing to unpack .../perl-modules_5.20.2-3+deb8u11_all.deb ... Unpacking perl-modules (5.20.2-3+deb8u11) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl (5.20.2-3+deb8u11) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../libpython2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7-minimal (2.7.9-2+deb8u1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.9-1_amd64.deb ... Unpacking python-minimal (2.7.9-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.58_all.deb ... Unpacking mime-support (3.58) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../libpython2.7-stdlib_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7 (2.7.9-2+deb8u1) ... 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Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../libnet-smtp-ssl-perl_1.01-3_all.deb ... Unpacking libnet-smtp-ssl-perl (1.01-3) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../libmailtools-perl_2.13-1_all.deb ... Unpacking libmailtools-perl (2.13-1) ... Selecting previously unselected package libmath-derivative-perl. Preparing to unpack .../libmath-derivative-perl_0.01-6_all.deb ... Unpacking libmath-derivative-perl (0.01-6) ... Selecting previously unselected package libmath-spline-perl. Preparing to unpack .../libmath-spline-perl_0.02-1_all.deb ... Unpacking libmath-spline-perl (0.02-1) ... Selecting previously unselected package libmime-tools-perl. Preparing to unpack .../libmime-tools-perl_5.505-1_all.deb ... Unpacking libmime-tools-perl (5.505-1) ... Selecting previously unselected package libmldbm-perl. Preparing to unpack .../libmldbm-perl_2.05-1_all.deb ... Unpacking libmldbm-perl (2.05-1) ... 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Adding 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Adding 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-1) ... Selecting previously unselected package libregexp-common-perl. Preparing to unpack .../libregexp-common-perl_2013031301-1_all.deb ... Unpacking libregexp-common-perl (2013031301-1) ... Selecting previously unselected package libpod-readme-perl. Preparing to unpack .../libpod-readme-perl_0.11-1_all.deb ... Unpacking libpod-readme-perl (0.11-1) ... Selecting previously unselected package libpostscript-perl. Preparing to unpack .../libpostscript-perl_0.06-2_all.deb ... Unpacking libpostscript-perl (0.06-2) ... Selecting previously unselected package libsasl2-modules:amd64. Preparing to unpack .../libsasl2-modules_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... 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Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.20.2-3+deb8u11) ... Selecting previously unselected package perl-tk. Preparing to unpack .../perl-tk_1%3a804.032-3+b3_amd64.deb ... Unpacking perl-tk (1:804.032-3+b3) ... Selecting previously unselected package phyml. Preparing to unpack .../phyml_2%3a20120412-2_amd64.deb ... Unpacking phyml (2:20120412-2) ... Selecting previously unselected package poa. Preparing to unpack .../poa_2.0+20060928-3_amd64.deb ... Unpacking poa (2.0+20060928-3) ... Selecting previously unselected package prank. Preparing to unpack .../prank_0.0.140110-1_amd64.deb ... Unpacking prank (0.0.140110-1) ... Selecting previously unselected package primer3. Preparing to unpack .../primer3_2.3.6-1_amd64.deb ... Unpacking primer3 (2.3.6-1) ... Selecting previously unselected package probalign. Preparing to unpack .../probalign_1.4-3_amd64.deb ... Unpacking probalign (1.4-3) ... 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Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up perl (5.20.2-3+deb8u11) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up mime-support (3.58) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fonts-liberation (1.07.4-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up fonts-droid (1:4.4.4r2-6) ... Setting up libapr1:amd64 (1.5.1-3) ... Setting up libaprutil1:amd64 (1.5.4-1) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libcups2:amd64 (1.7.5-11+deb8u2) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Setting up libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libvpx1:amd64 (1.3.0-3+deb8u1) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up libgd3:amd64 (2.1.0-5+deb8u11) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up mysql-common (5.5.60-0+deb8u1) ... Setting up libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up libthai-data (0.1.21-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libpq5:amd64 (9.4.18-0+deb8u1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up poppler-data (0.4.7-1) ... Setting up sgml-base (1.26+nmu4) ... Setting up iproute2 (3.16.0-2) ... Setting up ifupdown (0.7.53.1) ... Creating /etc/network/interfaces. Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up netbase (5.3) ... Setting up dbus (1.8.22-0+deb8u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up file (1:5.22+15-2+deb8u4) ... Setting up krb5-locales (1.12.1+dfsg-19+deb8u4) ... Setting up amap-align (2.2-4) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up apache2-bin (2.4.10-10+deb8u12) ... Setting up bedtools (2.21.0-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up libbio-perl-run-perl (1.6.9-2) ... Setting up bioperl-run (1.6.9-2) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up bwa (0.7.10-1) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done. Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up dialign (2.2.1-7) ... Setting up dialign-tx-data (1.0.2-7) ... Setting up dialign-tx (1.0.2-7) ... Setting up libhpdf-2.2.1 (2.2.1-1.1) ... Setting up emboss-lib (6.6.0+dfsg-1) ... Setting up emboss-data (6.6.0+dfsg-1) ... Setting up emboss (6.6.0+dfsg-1) ... Setting up exonerate (2.2.0-6) ... Setting up libjbig2dec0 (0.13-4~deb8u2) ... Setting up libgs9-common (9.06~dfsg-2+deb8u7) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up graphviz (2.38.0-7) ... Setting up hmmer (3.1b1-3) ... Setting up infernal (1.1.1-2) ... Setting up javascript-common (11) ... Setting up kalign (1:2.03+20110620-2) ... Setting up liberror-perl (0.17-1.1) ... Setting up libipc-sharelite-perl (0.17-3+b2) ... Setting up libcache-cache-perl (1.07-2) ... Setting up libace-perl (1.92-3+b1) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up libalgorithm-munkres-perl (0.08-2) ... Setting up libperl5.20 (5.20.2-3+deb8u11) ... Setting up libdevel-symdump-perl (2.12-1) ... Setting up liburi-perl (1.64-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libarchive-extract-perl (0.72-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up libsub-exporter-progressive-perl (0.001011-1) ... Setting up libdevel-globaldestruction-perl (0.13-1) ... Setting up libparams-classify-perl (0.013-4+b2) ... Setting up libmodule-runtime-perl (0.014-1) ... Setting up libimport-into-perl (1.002004-1) ... Setting up librole-tiny-perl (1.003004-1) ... Setting up libstrictures-perl (1.005005-1) ... Setting up libmoo-perl (1.006001-1) ... Setting up libexporter-tiny-perl (0.038-2) ... Setting up libtype-tiny-perl (1.000004-1) ... Setting up libarray-compare-perl (2.11-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libb-hooks-op-check-perl (0.19-2+b1) ... Setting up liblexical-sealrequirehints-perl (0.007-1+b2) ... Setting up libbareword-filehandles-perl (0.003-1+b2) ... Setting up libbio-asn1-entrezgene-perl (1.700-1) ... Setting up libgd-perl (2.53-1+b1) ... Setting up libbio-graphics-perl (2.39-2) ... Setting up libstaden-read1 (1.13.7-1) ... Setting up libbio-scf-perl (1.03-2+b1) ... Setting up libcarp-clan-perl (6.04-1) ... Setting up libbit-vector-perl (7.3-1+b2) ... Setting up libbsd-resource-perl (1.2907-1+b2) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libclass-xsaccessor-perl (1.19-2+b4) ... Setting up libclone-perl (0.37-1+b1) ... Setting up libconvert-binary-c-perl (0.76-3+b2) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libdate-calc-perl (6.3-2) ... Setting up libdate-calc-xs-perl (6.3-2) ... Setting up libdate-manip-perl (6.47-1) ... Setting up libdbd-mysql-perl (4.028-2+deb8u2) ... Setting up libdbd-pg-perl (3.4.2-1) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libpadwalker-perl (1.98-1+b1) ... Setting up libdevel-caller-perl (2.06-1+b2) ... Setting up libdevel-lexalias-perl (0.05-1+b2) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up libsvg-perl (2.59-1) ... Setting up libgd-svg-perl (0.33-1) ... Setting up libglib2.0-data (2.42.1-1) ... Setting up libheap-perl (0.80-2) ... Setting up libgraph-perl (1:0.96-1.1) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-run-perl (0.92-1+deb8u1) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhtml-tableextract-perl (2.11-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libindirect-perl (0.33-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmath-derivative-perl (0.01-6) ... Setting up libmath-spline-perl (0.02-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up libmldbm-perl (2.05-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libmultidimensional-perl (0.010-1+b2) ... Setting up libole-storage-lite-perl (0.19-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libpostscript-perl (0.06-2) ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libunicode-map-perl (0.112-11+b1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up libsub-name-perl (0.12-1) ... Setting up libtree-dagnode-perl (1.22-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libtie-ixhash-perl (1.23-1) ... Setting up libtype-tiny-xs-perl (0.010-1) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.92-1+b1) ... Setting up libxml-sax-writer-perl (0.54-1) ... Setting up libxml-simple-perl (2.20-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libyaml-libyaml-perl (0.41-6) ... Setting up libyaml-perl (1.13-1) ... Setting up mafft (7.205-1) ... Setting up maq (0.7.1-5) ... Setting up muscle (1:3.8.31-1) ... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up perl-doc (5.20.2-3+deb8u11) ... Setting up perl-tk (1:804.032-3+b3) ... Setting up phyml (2:20120412-2) ... Setting up poa (2.0+20060928-3) ... Setting up prank (0.0.140110-1) ... Setting up primer3 (2.3.6-1) ... Setting up probalign (1.4-3) ... Setting up probcons (1.12-9) ... Setting up proda (1.0-8) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up samtools (0.1.19-1) ... Setting up shared-mime-info (1.3-1) ... Setting up sim4 (0.0.20121010-1) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tigr-glimmer (3.02-3) ... Setting up tm-align (20140601+dfsg-1) ... Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up xdg-user-dirs (0.15-2) ... Setting up xml-core (0.13+nmu2) ... Setting up bowtie (1.1.1-2) ... Setting up libset-scalar-perl (1.29-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Setting up libwww-perl (6.08-1) ... Setting up libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Setting up libapache-dbi-perl (1.12-1) ... Setting up libapache2-reload-perl (0.12-3) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libsoap-lite-perl (1.11-1) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-dom-perl (1.44-1) ... Setting up libxml-dom-xpath-perl (0.14-1) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Setting up libgs9 (9.06~dfsg-2+deb8u7) ... Setting up ghostscript (9.06~dfsg-2+deb8u7) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for sgml-base (1.26+nmu4) ... 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-y', 'install', 'libbio-graphics-perl'] 0m47.6s INFO: Running scripts post_install 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_install_exceptions'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_install_exceptions'] 0m47.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 0m49.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 0m49.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp2dgqrx66 to stretch 0m49.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m49.1s INFO: Running scripts pre_distupgrade 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_exceptions'] 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_exceptions'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', 'update'] 0m51.8s DUMP: Ign http://deb.debian.org stretch InRelease Get:1 http://deb.debian.org stretch Release.gpg [3177 B] Get:2 http://deb.debian.org stretch Release [118 kB] Get:3 http://deb.debian.org stretch/main amd64 Packages [7080 kB] Get:4 http://deb.debian.org stretch/main Translation-en [5377 kB] Fetched 12.6 MB in 1s (7512 kB/s) Reading package lists... W: There is no public key available for the following key IDs: 648ACFD622F3D138 NO_PUBKEY 0E98404D386FA1D9 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', 'update'] 0m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-y', 'upgrade'] 1m26.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: ifupdown iproute2 isc-dhcp-client isc-dhcp-common libatm1 libdns-export100 libheap-perl libirs-export91 libisc-export95 libisccfg-export90 libxtables10 Use 'apt-get autoremove' to remove them. The following packages have been kept back: amap-align apache2-bin apt bedtools bioperl-run blast2 bowtie clustalo clustalw dbus dmsetup emboss emboss-data emboss-lib file ghostscript gnupg graphviz hmmer ifupdown init initscripts iproute2 isc-dhcp-client isc-dhcp-common libace-perl libalgorithm-diff-xs-perl libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libavahi-client3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libc-bin libc6 libcairo2 libclass-c3-xs-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libcpan-meta-perl libcrypt-ssleay-perl libcryptsetup4 libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdate-calc-perl libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-lexalias-perl libdevmapper1.02.1 libfcgi-perl libfreetype6 libgcc1 libgd-perl libgd3 libgfortran3 libgomp1 libgs9 libgs9-common libgvc6 libhpdf-2.2.1 libhtml-parser-perl libindirect-perl libio-pty-perl libipc-sharelite-perl libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblocale-gettext-perl libmagic1 libmultidimensional-perl libncbi6 libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libpadwalker-perl libparams-classify-perl libparams-util-perl libpod-readme-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librtmp1 libsasl2-2 libsasl2-modules libstdc++6 libsub-name-perl libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtext-soundex-perl libtype-tiny-xs-perl libudev1 libunicode-map-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libyaml-libyaml-perl lynx lynx-cur maq mime-support mustang ncbi-blast+ ncbi-data openssl perl perl-base perl-doc perl-tk phyml prank primer3 probalign probcons procps python python-minimal python2.7 python2.7-minimal ruby samtools systemd sysv-rc sysvinit-utils t-coffee tigr-glimmer udev util-linux wise wise-data The following packages will be upgraded: acl adduser base-files base-passwd bash bioperl bsdutils bwa ca-certificates coreutils dash debconf debconf-i18n debian-archive-keyring debianutils dialign dialign-tx dialign-tx-data diffutils dpkg e2fslibs e2fsprogs exonerate findutils fontconfig fontconfig-config fonts-dejavu-core fonts-liberation gpgv grep gsfonts gzip hostname infernal insserv kalign krb5-locales libacl1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-munkres-perl libapache2-reload-perl libapr1 libargtable2-0 libarray-compare-perl libatm1 libattr1 libaudit-common libaudit1 libavahi-common-data libavahi-common3 libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libblkid1 libbsd0 libbz2-1.0 libcache-cache-perl libcap-ng0 libcap2 libcap2-bin libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-c3-perl libclass-inspector-perl libclass-method-modifiers-perl libcomerr2 libconvert-binhex-perl libdata-optlist-perl libdata-stag-perl libdate-manip-perl libdatrie1 libdb5.3 libdebconfclient0 libdevel-globaldestruction-perl libdevel-symdump-perl libencode-locale-perl liberror-perl libexpat1 libexporter-tiny-perl libffi6 libfont-afm-perl libfontconfig1 libgcrypt20 libgdbm3 libglib2.0-0 libglib2.0-data libgmp10 libgpg-error0 libgraph-perl libgraphite2-3 libgraphviz-perl libgssapi-krb5-2 libgvpr2 libharfbuzz0b libheap-perl libhtml-format-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-message-perl libice6 libidn11 libijs-0.35 libimport-into-perl libio-socket-ssl-perl libio-stringy-perl libipc-run-perl libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblcms2-2 libltdl7 liblua5.1-0 liblzma5 libmailtools-perl libmath-derivative-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmount1 libncurses5 libncursesw5 libnet-http-perl libnet-smtp-ssl-perl libole-storage-lite-perl libp11-kit0 libpackage-constants-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparse-recdescent-perl libpathplan4 libpcre3 libpixman-1-0 libpod-latex-perl libregexp-common-perl librole-tiny-perl libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libset-scalar-perl libslang2 libsm6 libsmartcols1 libsoap-lite-perl libsoftware-license-perl libsqlite3-0 libss2 libssh2-1 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-progressive-perl libsvg-perl libtasn1-6 libterm-ui-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo5 libtree-dagnode-perl libtype-tiny-perl liburi-perl libusb-0.1-4 libustr-1.0-1 libuuid1 libwww-perl libx11-6 libx11-data libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-xpath-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-perl login lsb-base mafft mawk mount multiarch-support muscle mysql-common ncurses-base ncurses-bin netbase passwd poa poppler-data proda readline-common rename rubygems-integration sed sensible-utils sgml-base shared-mime-info sim4 startpar systemd-sysv tar tm-align tzdata ucf x11-common xdg-user-dirs xml-core zlib1g 247 upgraded, 0 newly installed, 0 to remove and 147 not upgraded. Need to get 82.5 MB of archives. After this operation, 30.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ stretch/main base-files amd64 9.9+deb9u13 [67.6 kB] Get:2 http://deb.debian.org/debian/ stretch/main libtinfo5 amd64 6.0+20161126-1+deb9u2 [300 kB] Get:3 http://deb.debian.org/debian/ stretch/main libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:4 http://deb.debian.org/debian/ stretch/main libncursesw5 amd64 6.0+20161126-1+deb9u2 [115 kB] Get:5 http://deb.debian.org/debian/ stretch/main sensible-utils all 0.0.9+deb9u1 [10.8 kB] Get:6 http://deb.debian.org/debian/ stretch/main debianutils amd64 4.8.1.1 [100 kB] Get:7 http://deb.debian.org/debian/ stretch/main bash amd64 4.4-5 [1427 kB] Get:8 http://deb.debian.org/debian/ stretch/main bsdutils amd64 1:2.29.2-1+deb9u1 [112 kB] Get:9 http://deb.debian.org/debian/ stretch/main coreutils amd64 8.26-3 [2870 kB] Get:10 http://deb.debian.org/debian/ stretch/main tar amd64 1.29b-1.1 [759 kB] Get:11 http://deb.debian.org/debian/ stretch/main liblzma5 amd64 5.2.2-1.2+b1 [234 kB] Get:12 http://deb.debian.org/debian/ stretch/main dpkg amd64 1.18.25 [2115 kB] Get:13 http://deb.debian.org/debian/ stretch/main dash amd64 0.5.8-2.4 [109 kB] Get:14 http://deb.debian.org/debian/ stretch/main diffutils amd64 1:3.5-3 [314 kB] Get:15 http://deb.debian.org/debian/ stretch/main e2fslibs amd64 1.43.4-2+deb9u1 [208 kB] Get:16 http://deb.debian.org/debian/ stretch/main e2fsprogs amd64 1.43.4-2+deb9u1 [947 kB] Get:17 http://deb.debian.org/debian/ stretch/main findutils amd64 4.6.0+git+20161106-2 [622 kB] Get:18 http://deb.debian.org/debian/ stretch/main grep amd64 2.27-2 [382 kB] Get:19 http://deb.debian.org/debian/ stretch/main gzip amd64 1.6-5+b1 [114 kB] Get:20 http://deb.debian.org/debian/ stretch/main hostname amd64 3.18+b1 [14.9 kB] Get:21 http://deb.debian.org/debian/ stretch/main login amd64 1:4.4-4.1 [790 kB] Get:22 http://deb.debian.org/debian/ stretch/main libpcre3 amd64 2:8.39-3 [337 kB] Get:23 http://deb.debian.org/debian/ stretch/main libselinux1 amd64 2.6-3+b3 [101 kB] Get:24 http://deb.debian.org/debian/ stretch/main libsmartcols1 amd64 2.29.2-1+deb9u1 [126 kB] Get:25 http://deb.debian.org/debian/ stretch/main mount amd64 2.29.2-1+deb9u1 [189 kB] Get:26 http://deb.debian.org/debian/ stretch/main ncurses-bin amd64 6.0+20161126-1+deb9u2 [366 kB] Get:27 http://deb.debian.org/debian/ stretch/main sed amd64 4.4-1 [280 kB] Get:28 http://deb.debian.org/debian/ stretch/main libdebconfclient0 amd64 0.227 [47.8 kB] Get:29 http://deb.debian.org/debian/ stretch/main base-passwd amd64 3.5.43 [57.7 kB] Get:30 http://deb.debian.org/debian/ stretch/main ncurses-base all 6.0+20161126-1+deb9u2 [238 kB] Get:31 http://deb.debian.org/debian/ stretch/main systemd-sysv amd64 232-25+deb9u12 [82.5 kB] Get:32 http://deb.debian.org/debian/ stretch/main libtext-wrapi18n-perl all 0.06-7.1 [8644 B] Get:33 http://deb.debian.org/debian/ stretch/main debconf-i18n all 1.5.61 [205 kB] Get:34 http://deb.debian.org/debian/ stretch/main debconf all 1.5.61 [159 kB] Get:35 http://deb.debian.org/debian/ stretch/main libaudit-common all 1:2.6.7-2 [18.1 kB] Get:36 http://deb.debian.org/debian/ stretch/main libcap-ng0 amd64 0.7.7-3+b1 [13.8 kB] Get:37 http://deb.debian.org/debian/ stretch/main libaudit1 amd64 1:2.6.7-2 [51.3 kB] Get:38 http://deb.debian.org/debian/ stretch/main libpam0g amd64 1.1.8-3.6 [125 kB] Get:39 http://deb.debian.org/debian/ stretch/main libpam-modules-bin amd64 1.1.8-3.6 [105 kB] Get:40 http://deb.debian.org/debian/ stretch/main libpam-modules amd64 1.1.8-3.6 [308 kB] Get:41 http://deb.debian.org/debian/ stretch/main mawk amd64 1.3.3-17+b3 [84.6 kB] Get:42 http://deb.debian.org/debian/ stretch/main libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:43 http://deb.debian.org/debian/ stretch/main ucf all 3.0036 [70.2 kB] Get:44 http://deb.debian.org/debian/ stretch/main fonts-dejavu-core all 2.37-1 [1068 kB] Get:45 http://deb.debian.org/debian/ stretch/main fonts-liberation all 1:1.07.4-2 [827 kB] Get:46 http://deb.debian.org/debian/ stretch/main fontconfig-config all 2.11.0-6.7 [271 kB] Get:47 http://deb.debian.org/debian/ stretch/main libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:48 http://deb.debian.org/debian/ stretch/main fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:49 http://deb.debian.org/debian/ stretch/main poppler-data all 0.4.7-8 [1451 kB] Get:50 http://deb.debian.org/debian/ stretch/main sgml-base all 1.29 [14.8 kB] Get:51 http://deb.debian.org/debian/ stretch/main libsepol1 amd64 2.6-2 [241 kB] Get:52 http://deb.debian.org/debian/ stretch/main libsemanage-common all 2.6-2 [26.9 kB] Get:53 http://deb.debian.org/debian/ stretch/main libsemanage1 amd64 2.6-2 [103 kB] Get:54 http://deb.debian.org/debian/ stretch/main libbz2-1.0 amd64 1.0.6-8.1 [43.5 kB] Get:55 http://deb.debian.org/debian/ stretch/main libustr-1.0-1 amd64 1.0.4-6 [76.3 kB] Get:56 http://deb.debian.org/debian/ stretch/main passwd amd64 1:4.4-4.1 [996 kB] Get:57 http://deb.debian.org/debian/ stretch/main adduser all 3.115 [241 kB] Get:58 http://deb.debian.org/debian/ stretch/main libgpg-error0 amd64 1.26-2 [112 kB] Get:59 http://deb.debian.org/debian/ stretch/main libgcrypt20 amd64 1.7.6-2+deb9u3 [524 kB] Get:60 http://deb.debian.org/debian/ stretch/main zlib1g amd64 1:1.2.8.dfsg-5 [87.5 kB] Get:61 http://deb.debian.org/debian/ stretch/main gpgv amd64 2.1.18-8~deb9u4 [481 kB] Get:62 http://deb.debian.org/debian/ stretch/main debian-archive-keyring all 2017.5+deb9u1 [73.9 kB] Get:63 http://deb.debian.org/debian/ stretch/main libkmod2 amd64 23-2 [48.1 kB] Get:64 http://deb.debian.org/debian/ stretch/main libslang2 amd64 2.3.1-5 [503 kB] Get:65 http://deb.debian.org/debian/ stretch/main readline-common all 7.0-3 [70.4 kB] Get:66 http://deb.debian.org/debian/ stretch/main libattr1 amd64 1:2.4.47-2+b2 [18.4 kB] Get:67 http://deb.debian.org/debian/ stretch/main libacl1 amd64 2.2.52-3+b1 [28.1 kB] Get:68 http://deb.debian.org/debian/ stretch/main acl amd64 2.2.52-3+b1 [59.5 kB] Get:69 http://deb.debian.org/debian/ stretch/main libuuid1 amd64 2.29.2-1+deb9u1 [70.1 kB] Get:70 http://deb.debian.org/debian/ stretch/main libblkid1 amd64 2.29.2-1+deb9u1 [168 kB] Get:71 http://deb.debian.org/debian/ stretch/main libcomerr2 amd64 1.43.4-2+deb9u1 [63.5 kB] Get:72 http://deb.debian.org/debian/ stretch/main libmount1 amd64 2.29.2-1+deb9u1 [178 kB] Get:73 http://deb.debian.org/debian/ stretch/main libpam-runtime all 1.1.8-3.6 [212 kB] Get:74 http://deb.debian.org/debian/ stretch/main libss2 amd64 1.43.4-2+deb9u1 [67.8 kB] Get:75 http://deb.debian.org/debian/ stretch/main lsb-base all 9.20161125 [27.9 kB] Get:76 http://deb.debian.org/debian/ stretch/main multiarch-support amd64 2.24-11+deb9u4 [201 kB] Get:77 http://deb.debian.org/debian/ stretch/main tzdata all 2020a-0+deb9u1 [278 kB] Get:78 http://deb.debian.org/debian/ stretch/main libcap2 amd64 1:2.25-1 [16.8 kB] Get:79 http://deb.debian.org/debian/ stretch/main libdb5.3 amd64 5.3.28-12+deb9u1 [679 kB] Get:80 http://deb.debian.org/debian/ stretch/main insserv amd64 1.14.0-5.4+b1 [61.8 kB] Get:81 http://deb.debian.org/debian/ stretch/main libcap2-bin amd64 1:2.25-1 [26.5 kB] Get:82 http://deb.debian.org/debian/ stretch/main libusb-0.1-4 amd64 2:0.1.12-30 [22.9 kB] Get:83 http://deb.debian.org/debian/ stretch/main startpar amd64 0.59-3.1 [22.5 kB] Get:84 http://deb.debian.org/debian/ stretch/main libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:85 http://deb.debian.org/debian/ stretch/main netbase all 5.4 [19.1 kB] Get:86 http://deb.debian.org/debian/ stretch/main krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:87 http://deb.debian.org/debian/ stretch/main libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:88 http://deb.debian.org/debian/ stretch/main libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:89 http://deb.debian.org/debian/ stretch/main libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:90 http://deb.debian.org/debian/ stretch/main libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:91 http://deb.debian.org/debian/ stretch/main libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:92 http://deb.debian.org/debian/ stretch/main libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:93 http://deb.debian.org/debian/ stretch/main libffi6 amd64 3.2.1-6 [20.4 kB] Get:94 http://deb.debian.org/debian/ stretch/main libp11-kit0 amd64 0.23.3-2 [111 kB] Get:95 http://deb.debian.org/debian/ stretch/main libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:96 http://deb.debian.org/debian/ stretch/main libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:97 http://deb.debian.org/debian/ stretch/main libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:98 http://deb.debian.org/debian/ stretch/main libdata-stag-perl all 0.14-2 [448 kB] Get:99 http://deb.debian.org/debian/ stretch/main bioperl all 1.7.1-2 [422 kB] Get:100 http://deb.debian.org/debian/ stretch/main libbio-perl-perl all 1.7.1-2 [4605 kB] Get:101 http://deb.debian.org/debian/ stretch/main bwa amd64 0.7.15-2+deb9u1 [194 kB] Get:102 http://deb.debian.org/debian/ stretch/main ca-certificates all 20200601~deb9u1 [160 kB] Get:103 http://deb.debian.org/debian/ stretch/main dialign amd64 2.2.1-8 [138 kB] Get:104 http://deb.debian.org/debian/ stretch/main dialign-tx amd64 1.0.2-9 [85.7 kB] Get:105 http://deb.debian.org/debian/ stretch/main dialign-tx-data all 1.0.2-9 [869 kB] Get:106 http://deb.debian.org/debian/ stretch/main libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:107 http://deb.debian.org/debian/ stretch/main exonerate amd64 2.4.0-2 [1476 kB] Get:108 http://deb.debian.org/debian/ stretch/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.3 [3126 kB] Get:109 http://deb.debian.org/debian/ stretch/main infernal amd64 1.1.2-1 [22.0 MB] Get:110 http://deb.debian.org/debian/ stretch/main kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:111 http://deb.debian.org/debian/ stretch/main libalgorithm-c3-perl all 0.10-1 [12.0 kB] Get:112 http://deb.debian.org/debian/ stretch/main libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:113 http://deb.debian.org/debian/ stretch/main libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:114 http://deb.debian.org/debian/ stretch/main libapache2-reload-perl all 0.13-1 [17.4 kB] Get:115 http://deb.debian.org/debian/ stretch/main libapr1 amd64 1.5.2-5 [96.6 kB] Get:116 http://deb.debian.org/debian/ stretch/main libargtable2-0 amd64 13-1 [17.4 kB] Get:117 http://deb.debian.org/debian/ stretch/main libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:118 http://deb.debian.org/debian/ stretch/main libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:119 http://deb.debian.org/debian/ stretch/main libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:120 http://deb.debian.org/debian/ stretch/main libmodule-runtime-perl all 0.014-2 [18.0 kB] Get:121 http://deb.debian.org/debian/ stretch/main libimport-into-perl all 1.002005-1 [11.6 kB] Get:122 http://deb.debian.org/debian/ stretch/main librole-tiny-perl all 2.000005-1 [19.0 kB] Get:123 http://deb.debian.org/debian/ stretch/main libstrictures-perl all 2.000003-1 [18.1 kB] Get:124 http://deb.debian.org/debian/ stretch/main libmoo-perl all 2.002005-1 [67.0 kB] Get:125 http://deb.debian.org/debian/ stretch/main libexporter-tiny-perl all 0.042-1 [32.4 kB] Get:126 http://deb.debian.org/debian/ stretch/main libtype-tiny-perl all 1.000005-1 [271 kB] Get:127 http://deb.debian.org/debian/ stretch/main libarray-compare-perl all 3.0.0-1 [14.0 kB] Get:128 http://deb.debian.org/debian/ stretch/main libatm1 amd64 1:2.5.1-2 [71.0 kB] Get:129 http://deb.debian.org/debian/ stretch/main libavahi-common-data amd64 0.6.32-2 [118 kB] Get:130 http://deb.debian.org/debian/ stretch/main libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:131 http://deb.debian.org/debian/ stretch/main libbio-asn1-entrezgene-perl all 1.720-1 [38.5 kB] Get:132 http://deb.debian.org/debian/ stretch/main libbio-graphics-perl all 2.40-1 [611 kB] Get:133 http://deb.debian.org/debian/ stretch/main libbsd0 amd64 0.8.3-1 [83.0 kB] Get:134 http://deb.debian.org/debian/ stretch/main liberror-perl all 0.17024-1 [26.9 kB] Get:135 http://deb.debian.org/debian/ stretch/main libcache-cache-perl all 1.08-2 [76.6 kB] Get:136 http://deb.debian.org/debian/ stretch/main libcarp-clan-perl all 6.06-1 [12.9 kB] Get:137 http://deb.debian.org/debian/ stretch/main libcdt5 amd64 2.38.0-17 [59.6 kB] Get:138 http://deb.debian.org/debian/ stretch/main libcgi-fast-perl all 1:2.12-1 [11.2 kB] Get:139 http://deb.debian.org/debian/ stretch/main libcgi-pm-perl all 4.35-1 [222 kB] Get:140 http://deb.debian.org/debian/ stretch/main libcgraph6 amd64 2.38.0-17 [82.2 kB] Get:141 http://deb.debian.org/debian/ stretch/main libclass-c3-perl all 0.32-1 [22.1 kB] Get:142 http://deb.debian.org/debian/ stretch/main libclass-inspector-perl all 1.31-1 [18.7 kB] Get:143 http://deb.debian.org/debian/ stretch/main libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:144 http://deb.debian.org/debian/ stretch/main libdata-optlist-perl all 0.110-1 [10.6 kB] Get:145 http://deb.debian.org/debian/ stretch/main libdate-manip-perl all 6.57-1 [911 kB] Get:146 http://deb.debian.org/debian/ stretch/main libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:147 http://deb.debian.org/debian/ stretch/main libdevel-symdump-perl all 2.17-1 [17.0 kB] Get:148 http://deb.debian.org/debian/ stretch/main libencode-locale-perl all 1.05-1 [13.7 kB] Get:149 http://deb.debian.org/debian/ stretch/main libfont-afm-perl all 1.20-2 [13.6 kB] Get:150 http://deb.debian.org/debian/ stretch/main libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:151 http://deb.debian.org/debian/ stretch/main libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:152 http://deb.debian.org/debian/ stretch/main libgraph-perl all 1:0.96-2 [126 kB] Get:153 http://deb.debian.org/debian/ stretch/main libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:154 http://deb.debian.org/debian/ stretch/main libipc-run-perl all 0.94-1+deb9u1 [99.1 kB] Get:155 http://deb.debian.org/debian/ stretch/main libparse-recdescent-perl all 1.967013+dfsg-1 [159 kB] Get:156 http://deb.debian.org/debian/ stretch/main libxml-twig-perl all 1:3.50-1 [179 kB] Get:157 http://deb.debian.org/debian/ stretch/main libxml-xpath-perl all 1.40-1 [69.2 kB] Get:158 http://deb.debian.org/debian/ stretch/main libgraphviz-perl all 2.22-1 [107 kB] Get:159 http://deb.debian.org/debian/ stretch/main libgvpr2 amd64 2.38.0-17 [211 kB] Get:160 http://deb.debian.org/debian/ stretch/main libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:161 http://deb.debian.org/debian/ stretch/main libheap-perl all 0.80-3 [34.2 kB] Get:162 http://deb.debian.org/debian/ stretch/main libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:163 http://deb.debian.org/debian/ stretch/main libhtml-tree-perl all 5.03-2 [210 kB] Get:164 http://deb.debian.org/debian/ stretch/main libhtml-format-perl all 2.12-1 [43.5 kB] Get:165 http://deb.debian.org/debian/ stretch/main libhtml-tableextract-perl all 2.13-1 [30.7 kB] Get:166 http://deb.debian.org/debian/ stretch/main liburi-perl all 1.71-1 [88.6 kB] Get:167 http://deb.debian.org/debian/ stretch/main libhttp-message-perl all 6.11-1 [75.9 kB] Get:168 http://deb.debian.org/debian/ stretch/main x11-common all 1:7.7+19 [251 kB] Get:169 http://deb.debian.org/debian/ stretch/main libice6 amd64 2:1.0.9-2 [58.7 kB] Get:170 http://deb.debian.org/debian/ stretch/main libijs-0.35 amd64 0.35-12 [18.4 kB] Get:171 http://deb.debian.org/debian/ stretch/main libio-socket-ssl-perl all 2.044-1 [195 kB] Get:172 http://deb.debian.org/debian/ stretch/main libio-stringy-perl all 2.111-2 [61.2 kB] Get:173 http://deb.debian.org/debian/ stretch/main libjbig2dec0 amd64 0.13-4.1 [60.1 kB] Get:174 http://deb.debian.org/debian/ stretch/main libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:175 http://deb.debian.org/debian/ stretch/main libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:176 http://deb.debian.org/debian/ stretch/main liblcms2-2 amd64 2.8-4+deb9u1 [143 kB] Get:177 http://deb.debian.org/debian/ stretch/main libltdl7 amd64 2.4.6-2 [389 kB] Get:178 http://deb.debian.org/debian/ stretch/main liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:179 http://deb.debian.org/debian/ stretch/main libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:180 http://deb.debian.org/debian/ stretch/main libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:181 http://deb.debian.org/debian/ stretch/main libmailtools-perl all 2.18-1 [88.5 kB] Get:182 http://deb.debian.org/debian/ stretch/main libmath-derivative-perl all 0.04-2 [7208 B] Get:183 http://deb.debian.org/debian/ stretch/main libmime-tools-perl all 5.508-1 [212 kB] Get:184 http://deb.debian.org/debian/ stretch/main libmldbm-perl all 2.05-2 [18.4 kB] Get:185 http://deb.debian.org/debian/ stretch/main libmodule-build-perl all 0.422000-1 [259 kB] Get:186 http://deb.debian.org/debian/ stretch/main libmodule-pluggable-perl all 5.2-1 [25.7 kB] Get:187 http://deb.debian.org/debian/ stretch/main libmodule-signature-perl all 0.81-1 [30.1 kB] Get:188 http://deb.debian.org/debian/ stretch/main libnet-http-perl all 6.12-1 [23.8 kB] Get:189 http://deb.debian.org/debian/ stretch/main libole-storage-lite-perl all 0.19-1+deb9u1 [23.4 kB] Get:190 http://deb.debian.org/debian/ stretch/main libpackage-constants-perl all 0.06-1 [6248 B] Get:191 http://deb.debian.org/debian/ stretch/main libthai-data all 0.1.26-1 [166 kB] Get:192 http://deb.debian.org/debian/ stretch/main libthai0 amd64 0.1.26-1 [52.1 kB] Get:193 http://deb.debian.org/debian/ stretch/main libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:194 http://deb.debian.org/debian/ stretch/main libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:195 http://deb.debian.org/debian/ stretch/main libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:196 http://deb.debian.org/debian/ stretch/main libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:197 http://deb.debian.org/debian/ stretch/main libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:198 http://deb.debian.org/debian/ stretch/main libpathplan4 amd64 2.38.0-17 [62.8 kB] Get:199 http://deb.debian.org/debian/ stretch/main libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:200 http://deb.debian.org/debian/ stretch/main libpod-latex-perl all 0.61-2 [31.6 kB] Get:201 http://deb.debian.org/debian/ stretch/main libregexp-common-perl all 2016060801-1 [178 kB] Get:202 http://deb.debian.org/debian/ stretch/main libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:203 http://deb.debian.org/debian/ stretch/main libsoap-lite-perl all 1.20-1 [259 kB] Get:204 http://deb.debian.org/debian/ stretch/main libwww-perl all 6.15-1 [195 kB] Get:205 http://deb.debian.org/debian/ stretch/main libsoftware-license-perl all 0.103012-1 [112 kB] Get:206 http://deb.debian.org/debian/ stretch/main libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:207 http://deb.debian.org/debian/ stretch/main libstatistics-descriptive-perl all 3.0612-1 [41.9 kB] Get:208 http://deb.debian.org/debian/ stretch/main libsvg-perl all 2.64-1 [69.8 kB] Get:209 http://deb.debian.org/debian/ stretch/main libterm-ui-perl all 0.46-1 [19.4 kB] Get:210 http://deb.debian.org/debian/ stretch/main libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:211 http://deb.debian.org/debian/ stretch/main libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:212 http://deb.debian.org/debian/ stretch/main libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:213 http://deb.debian.org/debian/ stretch/main libtree-dagnode-perl all 1.29-1 [60.6 kB] Get:214 http://deb.debian.org/debian/ stretch/main libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:215 http://deb.debian.org/debian/ stretch/main libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:216 http://deb.debian.org/debian/ stretch/main libxcb1 amd64 1.12-1 [133 kB] Get:217 http://deb.debian.org/debian/ stretch/main libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:218 http://deb.debian.org/debian/ stretch/main libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:219 http://deb.debian.org/debian/ stretch/main libxt6 amd64 1:1.1.5-1 [188 kB] Get:220 http://deb.debian.org/debian/ stretch/main libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:221 http://deb.debian.org/debian/ stretch/main libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:222 http://deb.debian.org/debian/ stretch/main libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:223 http://deb.debian.org/debian/ stretch/main libxcb-render0 amd64 1.12-1 [105 kB] Get:224 http://deb.debian.org/debian/ stretch/main libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:225 http://deb.debian.org/debian/ stretch/main libxdot4 amd64 2.38.0-17 [55.6 kB] Get:226 http://deb.debian.org/debian/ stretch/main libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:227 http://deb.debian.org/debian/ stretch/main libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:228 http://deb.debian.org/debian/ stretch/main libxml-dom-perl all 1.44-2 [179 kB] Get:229 http://deb.debian.org/debian/ stretch/main libxml-dom-xpath-perl all 0.14-2 [9622 B] Get:230 http://deb.debian.org/debian/ stretch/main libxml-sax-writer-perl all 0.56-1 [23.7 kB] Get:231 http://deb.debian.org/debian/ stretch/main libxml-simple-perl all 2.22-1 [71.8 kB] Get:232 http://deb.debian.org/debian/ stretch/main libxslt1.1 amd64 1.1.29-2.1+deb9u2 [233 kB] Get:233 http://deb.debian.org/debian/ stretch/main libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:234 http://deb.debian.org/debian/ stretch/main libyaml-perl all 1.21-1 [64.8 kB] Get:235 http://deb.debian.org/debian/ stretch/main mafft amd64 7.307-1 [889 kB] Get:236 http://deb.debian.org/debian/ stretch/main muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:237 http://deb.debian.org/debian/ stretch/main mysql-common all 5.8+1.0.2 [5608 B] Get:238 http://deb.debian.org/debian/ stretch/main poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:239 http://deb.debian.org/debian/ stretch/main proda amd64 1.0-10 [60.1 kB] Get:240 http://deb.debian.org/debian/ stretch/main rename all 0.20-4 [12.5 kB] Get:241 http://deb.debian.org/debian/ stretch/main rubygems-integration all 1.11 [4994 B] Get:242 http://deb.debian.org/debian/ stretch/main shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:243 http://deb.debian.org/debian/ stretch/main sim4 amd64 0.0.20121010-4 [396 kB] Get:244 http://deb.debian.org/debian/ stretch/main tm-align amd64 20160521+dfsg-2 [868 kB] Get:245 http://deb.debian.org/debian/ stretch/main xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:246 http://deb.debian.org/debian/ stretch/main xml-core all 0.17 [23.2 kB] Get:247 http://deb.debian.org/debian/ stretch/main libset-scalar-perl all 1.29-2 [31.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.5 MB in 3s (23.7 MB/s) (Reading database ... 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Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27364 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libtinfo5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libtinfo5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 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Removing obsolete conffile /etc/bash_completion.d/debconf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27363 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.6.7-2_all.deb ... Unpacking libaudit-common (1:2.6.7-2) over (1:2.4-1) ... Setting up libaudit-common (1:2.6.7-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27362 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-3.6_amd64.deb ... Unpacking libpam-modules-bin (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Setting up libpam-modules-bin (1.1.8-3.6) ... (Reading database ... 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Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27364 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.6-2_all.deb ... Unpacking libsemanage-common (2.6-2) over (2.3-1) ... Setting up libsemanage-common (2.6-2) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27364 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.6-2_amd64.deb ... Unpacking libsemanage1:amd64 (2.6-2) over (2.3-1+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libsemanage1:amd64 (2.6-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27363 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-8.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-8.1) over (1.0.6-7+b3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libbz2-1.0:amd64 (1.0.6-8.1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27362 files and directories currently installed.) Preparing to unpack .../libustr-1.0-1_1.0.4-6_amd64.deb ... Unpacking libustr-1.0-1:amd64 (1.0.4-6) over (1.0.4-3+b2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libustr-1.0-1:amd64 (1.0.4-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27357 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1_amd64.deb ... Unpacking passwd (1:4.4-4.1) over (1:4.2-3+deb8u4) ... Setting up passwd (1:4.4-4.1) ... (Reading database ... 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Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up bioperl (1.7.1-2) ... Setting up bwa (0.7.15-2+deb9u1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 30 added, 78 removed; done. Setting up dialign (2.2.1-8) ... Setting up dialign-tx-data (1.0.2-9) ... Setting up dialign-tx (1.0.2-9) ... Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up exonerate (2.4.0-2) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... Setting up infernal (1.1.2-1) ... Setting up kalign (1:2.03+20110620-3) ... Setting up libalgorithm-c3-perl (0.10-1) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up libapache2-reload-perl (0.13-1) ... Setting up libapr1:amd64 (1.5.2-5) ... Setting up libargtable2-0 (13-1) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libmodule-runtime-perl (0.014-2) ... Setting up libimport-into-perl (1.002005-1) ... Setting up librole-tiny-perl (2.000005-1) ... Setting up libstrictures-perl (2.000003-1) ... Setting up libmoo-perl (2.002005-1) ... Setting up libexporter-tiny-perl (0.042-1) ... Setting up libtype-tiny-perl (1.000005-1) ... Setting up libarray-compare-perl (3.0.0-1) ... Setting up libatm1:amd64 (1:2.5.1-2) ... Setting up libavahi-common-data:amd64 (0.6.32-2) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up libbio-asn1-entrezgene-perl (1.720-1) ... Setting up libbio-graphics-perl (2.40-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up liberror-perl (0.17024-1) ... Setting up libcache-cache-perl (1.08-2) ... Setting up libcarp-clan-perl (6.06-1) ... Setting up libcdt5 (2.38.0-17) ... Setting up libcgi-pm-perl (4.35-1) ... Setting up libcgi-fast-perl (1:2.12-1) ... Setting up libcgraph6 (2.38.0-17) ... Setting up libclass-c3-perl (0.32-1) ... Setting up libclass-inspector-perl (1.31-1) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libdate-manip-perl (6.57-1) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libdevel-symdump-perl (2.17-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libfont-afm-perl (1.20-2) ... Setting up libglib2.0-data (2.50.3-2+deb9u2) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libgraph-perl (1:0.96-2) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up libipc-run-perl (0.94-1+deb9u1) ... Setting up libparse-recdescent-perl (1.967013+dfsg-1) ... Setting up libxml-twig-perl (1:3.50-1) ... Setting up libxml-xpath-perl (1.40-1) ... Setting up libgraphviz-perl (2.22-1) ... Setting up libgvpr2 (2.38.0-17) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libheap-perl (0.80-3) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libhtml-format-perl (2.12-1) ... Setting up libhtml-tableextract-perl (2.13-1) ... Setting up liburi-perl (1.71-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up x11-common (1:7.7+19) ... Installing new version of config file /etc/init.d/x11-common ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of restart. Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libijs-0.35:amd64 (0.35-12) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libio-stringy-perl (2.111-2) ... Setting up libjbig2dec0:amd64 (0.13-4.1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up liblcms2-2:amd64 (2.8-4+deb9u1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libmath-derivative-perl (0.04-2) ... Setting up libmime-tools-perl (5.508-1) ... Setting up libmldbm-perl (2.05-2) ... Setting up libmodule-build-perl (0.422000-1) ... Setting up libmodule-pluggable-perl (5.2-1) ... Setting up libmodule-signature-perl (0.81-1) ... Setting up libnet-http-perl (6.12-1) ... Setting up libole-storage-lite-perl (0.19-1+deb9u1) ... Setting up libpackage-constants-perl (0.06-1) ... Setting up libthai-data (0.1.26-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up libpathplan4 (2.38.0-17) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libpod-latex-perl (0.61-2) ... Setting up libregexp-common-perl (2016060801-1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libwww-perl (6.15-1) ... Setting up libsoap-lite-perl (1.20-1) ... Setting up libsoftware-license-perl (0.103012-1) ... Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Setting up libstatistics-descriptive-perl (3.0612-1) ... Setting up libsvg-perl (2.64-1) ... Setting up libterm-ui-perl (0.46-1) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libtree-dagnode-perl (1.29-1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxdot4 (2.38.0-17) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up libxml-dom-perl (1.44-2) ... Setting up libxml-dom-xpath-perl (0.14-2) ... Setting up libxml-sax-writer-perl (0.56-1) ... Setting up libxml-simple-perl (2.22-1) ... Setting up libxslt1.1:amd64 (1.1.29-2.1+deb9u2) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up libyaml-perl (1.21-1) ... Setting up mafft (7.307-1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up mysql-common (5.8+1.0.2) ... Removing obsolete conffile /etc/mysql/conf.d/.keepme ... Removing obsolete conffile /etc/mysql/my.cnf ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up poa (2.0+20060928-4+b1) ... Setting up proda (1.0-10) ... Setting up rename (0.20-4) ... Setting up rubygems-integration (1.11) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up sim4 (0.0.20121010-4) ... Setting up tm-align (20160521+dfsg-2) ... Setting up xdg-user-dirs (0.15-2+b1) ... Setting up xml-core (0.17) ... Setting up libset-scalar-perl (1.29-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for sgml-base (1.29) ... 1m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-y', 'upgrade'] 1m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-yf', 'dist-upgrade'] 2m10.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: ifupdown iproute2 isc-dhcp-client isc-dhcp-common libatm1 libdns-export100 libdns-export162 libelf1 libgnutls-deb0-28 libheap-perl libhogweed2 libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjasper1 liblua5.1-0 libmnl0 libmysqlclient18 libncbi6 libnettle4 libpng12-0 libregexp-common-perl libstaden-read1 libvpx1 libxtables10 libxtables12 lynx-cur Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: fonts-droid libperl5.20 perl-modules The following NEW packages will be installed: beignet-opencl-icd blends-common bzip2 dirmngr fonts-droid-fallback fonts-lato fonts-noto-mono fsa gawk gcc-6-base gnupg-agent gnupg-l10n hyphy-common hyphy-mpi init-system-helpers libann0 libapparmor1 libapt-pkg5.0 libassuan0 libb-hooks-endofscope-perl libbytes-random-secure-perl libcpan-changes-perl libcrypt-random-seed-perl libdata-perl-perl libdivsufsort3 libdns-export162 libdrm-intel1 libdrm2 libelf1 libfabric1 libfdisk1 libfile-slurp-perl libgetopt-long-descriptive-perl libgnutls30 libgts-0.7-5 libgts-bin libhmsbeagle1v5 libhogweed4 libhts1 libhwloc-plugins libhwloc5 libibverbs1 libicu57 libidn2-0 libip4tc0 libisc-export160 libksba8 libldap-common liblua5.2-0 liblz4-1 libmagic-mgc libmariadbclient18 libmath-random-isaac-perl libmath-random-isaac-xs-perl libmnl0 libmodule-implementation-perl libmodule-load-conditional-perl libmoox-handlesvia-perl libmpfr4 libnamespace-autoclean-perl libnamespace-clean-perl libnettle6 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnpth0 libnuma1 libopenjp2-7 libopenmpi2 libpackage-stash-perl libpackage-stash-xs-perl libparams-validate-perl libpath-tiny-perl libpciaccess0 libperl5.24 libpng16-16 libpod-markdown-perl libprocps6 libpsl5 libpsm-infinipath1 librdmacm1 libreadline7 libruby2.3 libseccomp2 libsigsegv2 libssl1.0.2 libssl1.1 libstaden-read11 libsub-identify-perl libtry-tiny-perl libunicode-utf8-perl libunistring0 libvariable-magic-perl libwebp6 libxfixes3 libxtables12 lynx-common manpages med-config menu mummer ncbi-blast+-legacy ocl-icd-libopencl1 openmpi-bin openmpi-common perl-modules-5.24 perl-openssl-defaults phylip pinentry-curses publicsuffix rake raxml ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 unzip xz-utils zip The following packages will be upgraded: amap-align apache2-bin apt bedtools bioperl-run blast2 bowtie clustalo clustalw dbus dmsetup emboss emboss-data emboss-lib file ghostscript gnupg graphviz hmmer ifupdown init initscripts iproute2 isc-dhcp-client isc-dhcp-common libace-perl libalgorithm-diff-xs-perl libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libavahi-client3 libb-hooks-op-check-perl libbareword-filehandles-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libc-bin libc6 libcairo2 libclass-c3-xs-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libcpan-meta-perl libcrypt-ssleay-perl libcryptsetup4 libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdate-calc-perl libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-lexalias-perl libdevmapper1.02.1 libfcgi-perl libfreetype6 libgcc1 libgd-perl libgd3 libgfortran3 libgomp1 libgs9 libgs9-common libgvc6 libhpdf-2.2.1 libhtml-parser-perl libindirect-perl libio-pty-perl libipc-sharelite-perl libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblocale-gettext-perl libmagic1 libmultidimensional-perl libncbi6 libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libpadwalker-perl libparams-classify-perl libparams-util-perl libpod-readme-perl libpq5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librtmp1 libsasl2-2 libsasl2-modules libstdc++6 libsub-name-perl libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtext-soundex-perl libtype-tiny-xs-perl libudev1 libunicode-map-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libyaml-libyaml-perl lynx lynx-cur maq mime-support mustang ncbi-blast+ ncbi-data openssl perl perl-base perl-doc perl-tk phyml prank primer3 probalign probcons procps python python-minimal python2.7 python2.7-minimal ruby samtools systemd sysv-rc sysvinit-utils t-coffee tigr-glimmer udev util-linux wise wise-data 147 upgraded, 121 newly installed, 3 to remove and 0 not upgraded. Need to get 205 MB of archives. After this operation, 222 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ stretch/main libc6 amd64 2.24-11+deb9u4 [2694 kB] Get:2 http://deb.debian.org/debian/ stretch/main libc-bin amd64 2.24-11+deb9u4 [782 kB] Get:3 http://deb.debian.org/debian/ stretch/main gcc-6-base amd64 6.3.0-18+deb9u1 [180 kB] Get:4 http://deb.debian.org/debian/ stretch/main libgcc1 amd64 1:6.3.0-18+deb9u1 [38.0 kB] Get:5 http://deb.debian.org/debian/ stretch/main libfdisk1 amd64 2.29.2-1+deb9u1 [203 kB] Get:6 http://deb.debian.org/debian/ stretch/main init-system-helpers all 1.48 [44.0 kB] Get:7 http://deb.debian.org/debian/ stretch/main util-linux amd64 2.29.2-1+deb9u1 [981 kB] Get:8 http://deb.debian.org/debian/ stretch/main sysvinit-utils amd64 2.88dsf-59.9 [68.4 kB] Get:9 http://deb.debian.org/debian/ stretch/main initscripts amd64 2.88dsf-59.9 [84.5 kB] Get:10 http://deb.debian.org/debian/ stretch/main sysv-rc all 2.88dsf-59.9 [67.4 kB] Get:11 http://deb.debian.org/debian/ stretch/main perl-doc all 5.24.1-3+deb9u7 [7145 kB] Get:12 http://deb.debian.org/debian/ stretch/main libclass-xsaccessor-perl amd64 1.19-2+b7 [36.7 kB] Get:13 http://deb.debian.org/debian/ stretch/main liblua5.2-0 amd64 5.2.4-1.1+b2 [110 kB] Get:14 http://deb.debian.org/debian/ stretch/main libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:15 http://deb.debian.org/debian/ stretch/main libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:16 http://deb.debian.org/debian/ stretch/main apache2-bin amd64 2.4.25-3+deb9u9 [1185 kB] Get:17 http://deb.debian.org/debian/ stretch/main libcpan-meta-perl all 2.150010-1 [129 kB] Get:18 http://deb.debian.org/debian/ stretch/main perl amd64 5.24.1-3+deb9u7 [218 kB] Get:19 http://deb.debian.org/debian/ stretch/main perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:20 http://deb.debian.org/debian/ stretch/main libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:21 http://deb.debian.org/debian/ stretch/main libapache2-mod-perl2 amd64 2.0.10-2+deb9u1 [886 kB] Get:22 http://deb.debian.org/debian/ stretch/main libfcgi-perl amd64 0.78-2 [38.2 kB] Get:23 http://deb.debian.org/debian/ stretch/main libnettle6 amd64 3.3-1+b2 [192 kB] Get:24 http://deb.debian.org/debian/ stretch/main libhogweed4 amd64 3.3-1+b2 [136 kB] Get:25 http://deb.debian.org/debian/ stretch/main libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:26 http://deb.debian.org/debian/ stretch/main ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:27 http://deb.debian.org/debian/ stretch/main libstdc++6 amd64 6.3.0-18+deb9u1 [396 kB] Get:28 http://deb.debian.org/debian/ stretch/main libmariadbclient18 amd64 10.1.45-0+deb9u1 [785 kB] Get:29 http://deb.debian.org/debian/ stretch/main libdbd-mysql-perl amd64 4.041-2 [114 kB] Get:30 http://deb.debian.org/debian/ stretch/main libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:31 http://deb.debian.org/debian/ stretch/main libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:32 http://deb.debian.org/debian/ stretch/main libcrypt-random-seed-perl all 0.03-1 [22.5 kB] Get:33 http://deb.debian.org/debian/ stretch/main libmath-random-isaac-perl all 1.003-1 [22.6 kB] Get:34 http://deb.debian.org/debian/ stretch/main libbytes-random-secure-perl all 0.28-1 [29.4 kB] Get:35 http://deb.debian.org/debian/ stretch/main libcrypt-ssleay-perl amd64 0.73.04-2 [57.1 kB] Get:36 http://deb.debian.org/debian/ stretch/main libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:37 http://deb.debian.org/debian/ stretch/main perl-openssl-defaults amd64 3 [6782 B] Get:38 http://deb.debian.org/debian/ stretch/main libyaml-libyaml-perl amd64 0.63-2 [68.8 kB] Get:39 http://deb.debian.org/debian/ stretch/main libsub-name-perl amd64 0.21-1 [13.1 kB] Get:40 http://deb.debian.org/debian/ stretch/main libindirect-perl amd64 0.37-1+b1 [28.1 kB] Get:41 http://deb.debian.org/debian/ stretch/main libhtml-parser-perl amd64 3.72-3 [104 kB] Get:42 http://deb.debian.org/debian/ stretch/main libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:43 http://deb.debian.org/debian/ stretch/main perl-tk amd64 1:804.033-1+b3 [1943 kB] Get:44 http://deb.debian.org/debian/ stretch/main libdbd-pg-perl amd64 3.5.3-1+b2 [203 kB] Get:45 http://deb.debian.org/debian/ stretch/main libbit-vector-perl amd64 7.4-1+b2 [146 kB] Get:46 http://deb.debian.org/debian/ stretch/main libdate-calc-perl all 6.4-1 [194 kB] Get:47 http://deb.debian.org/debian/ stretch/main libdate-calc-xs-perl amd64 6.4-1+b2 [54.3 kB] Get:48 http://deb.debian.org/debian/ stretch/main libdbd-sqlite3-perl amd64 1.54-1 [164 kB] Get:49 http://deb.debian.org/debian/ stretch/main libdbi-perl amd64 1.636-1+b1 [766 kB] Get:50 http://deb.debian.org/debian/ stretch/main libstaden-read11 amd64 1.14.8-2 [311 kB] Get:51 http://deb.debian.org/debian/ stretch/main libbio-scf-perl amd64 1.03-3 [20.3 kB] Get:52 http://deb.debian.org/debian/ stretch/main libparams-classify-perl amd64 0.013-6+b1 [24.4 kB] Get:53 http://deb.debian.org/debian/ stretch/main libparams-util-perl amd64 1.07-3+b1 [22.7 kB] Get:54 http://deb.debian.org/debian/ stretch/main libpadwalker-perl amd64 2.2-2+b1 [19.7 kB] Get:55 http://deb.debian.org/debian/ stretch/main libconvert-binary-c-perl amd64 0.78-1+b1 [271 kB] Get:56 http://deb.debian.org/debian/ stretch/main libmultidimensional-perl amd64 0.012-1+b1 [8146 B] Get:57 http://deb.debian.org/debian/ stretch/main libtext-charwidth-perl amd64 0.04-7+b5 [9870 B] Get:58 http://deb.debian.org/debian/ stretch/main libbareword-filehandles-perl amd64 0.004-1+b1 [8572 B] Get:59 http://deb.debian.org/debian/ stretch/main liblexical-sealrequirehints-perl amd64 0.010-1+b1 [15.9 kB] Get:60 http://deb.debian.org/debian/ stretch/main libclone-perl amd64 0.38-2+b1 [13.6 kB] Get:61 http://deb.debian.org/debian/ stretch/main perl-base amd64 5.24.1-3+deb9u7 [1346 kB] Get:62 http://deb.debian.org/debian/ stretch/main liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:63 http://deb.debian.org/debian/ stretch/main libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:64 http://deb.debian.org/debian/ stretch/main libace-perl amd64 1.92-4+b1 [286 kB] Get:65 http://deb.debian.org/debian/ stretch/main libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:66 http://deb.debian.org/debian/ stretch/main libxml-libxslt-perl amd64 1.95-1+b1 [46.8 kB] Get:67 http://deb.debian.org/debian/ stretch/main libbsd-resource-perl amd64 1.2910-1+b1 [33.7 kB] Get:68 http://deb.debian.org/debian/ stretch/main libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:69 http://deb.debian.org/debian/ stretch/main libgd-perl amd64 2.53-3 [177 kB] Get:70 http://deb.debian.org/debian/ stretch/main libdevel-caller-perl amd64 2.06-1+b4 [11.8 kB] Get:71 http://deb.debian.org/debian/ stretch/main libunicode-map-perl amd64 0.112-11+b3 [145 kB] Get:72 http://deb.debian.org/debian/ stretch/main libtype-tiny-xs-perl amd64 0.012-1+b2 [26.8 kB] Get:73 http://deb.debian.org/debian/ stretch/main libtext-soundex-perl amd64 3.4-1+b4 [12.8 kB] Get:74 http://deb.debian.org/debian/ stretch/main libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:75 http://deb.debian.org/debian/ stretch/main libb-hooks-op-check-perl amd64 0.19-3+b1 [10.4 kB] Get:76 http://deb.debian.org/debian/ stretch/main libio-pty-perl amd64 1:1.08-1.1+b2 [33.6 kB] Get:77 http://deb.debian.org/debian/ stretch/main libipc-sharelite-perl amd64 0.17-4 [24.0 kB] Get:78 http://deb.debian.org/debian/ stretch/main libclass-c3-xs-perl amd64 0.14-1+b1 [16.3 kB] Get:79 http://deb.debian.org/debian/ stretch/main libdevel-lexalias-perl amd64 0.05-1+b4 [8752 B] Get:80 http://deb.debian.org/debian/ stretch/main liblist-moreutils-perl amd64 0.416-1+b1 [63.0 kB] Get:81 http://deb.debian.org/debian/ stretch/main blast2 all 1:2.6.0-1 [9084 B] Get:82 http://deb.debian.org/debian/ stretch/main ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:83 http://deb.debian.org/debian/ stretch/main libncbi6 amd64 6.1.20170106+dfsg1-0+deb9u1 [4024 kB] Get:84 http://deb.debian.org/debian/ stretch/main ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:85 http://deb.debian.org/debian/ stretch/main libreadline7 amd64 7.0-3 [151 kB] Get:86 http://deb.debian.org/debian/ stretch/main mime-support all 3.60 [36.7 kB] Get:87 http://deb.debian.org/debian/ stretch/main python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:88 http://deb.debian.org/debian/ stretch/main libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:89 http://deb.debian.org/debian/ stretch/main python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:90 http://deb.debian.org/debian/ stretch/main libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:91 http://deb.debian.org/debian/ stretch/main python-minimal amd64 2.7.13-2 [40.5 kB] Get:92 http://deb.debian.org/debian/ stretch/main python amd64 2.7.13-2 [154 kB] Get:93 http://deb.debian.org/debian/ stretch/main libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:94 http://deb.debian.org/debian/ stretch/main libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:95 http://deb.debian.org/debian/ stretch/main libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:96 http://deb.debian.org/debian/ stretch/main libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:97 http://deb.debian.org/debian/ stretch/main libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:98 http://deb.debian.org/debian/ stretch/main libaprutil1-ldap amd64 1.5.4-3 [17.4 kB] Get:99 http://deb.debian.org/debian/ stretch/main libaprutil1-dbd-sqlite3 amd64 1.5.4-3 [19.3 kB] Get:100 http://deb.debian.org/debian/ stretch/main libaprutil1 amd64 1.5.4-3 [85.8 kB] Get:101 http://deb.debian.org/debian/ stretch/main libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:102 http://deb.debian.org/debian/ stretch/main libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:103 http://deb.debian.org/debian/ stretch/main libpq5 amd64 9.6.17-0+deb9u1 [137 kB] Get:104 http://deb.debian.org/debian/ stretch/main libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:105 http://deb.debian.org/debian/ stretch/main libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:106 http://deb.debian.org/debian/ stretch/main libpsl5 amd64 0.17.0-3 [41.8 kB] Get:107 http://deb.debian.org/debian/ stretch/main librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:108 http://deb.debian.org/debian/ stretch/main libcurl3-gnutls amd64 7.52.1-5+deb9u10 [290 kB] Get:109 http://deb.debian.org/debian/ stretch/main libwebp6 amd64 0.5.2-1 [235 kB] Get:110 http://deb.debian.org/debian/ stretch/main libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:111 http://deb.debian.org/debian/ stretch/main libgd3 amd64 2.2.4-2+deb9u5 [132 kB] Get:112 http://deb.debian.org/debian/ stretch/main libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:113 http://deb.debian.org/debian/ stretch/main init amd64 1.48 [12.0 kB] Get:114 http://deb.debian.org/debian/ stretch/main liblz4-1 amd64 0.0~r131-2+b1 [33.3 kB] Get:115 http://deb.debian.org/debian/ stretch/main libapt-pkg5.0 amd64 1.4.10 [917 kB] Get:116 http://deb.debian.org/debian/ stretch/main apt amd64 1.4.10 [1232 kB] Get:117 http://deb.debian.org/debian/ stretch/main libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:118 http://deb.debian.org/debian/ stretch/main libip4tc0 amd64 1.6.0+snapshot20161117-6 [67.8 kB] Get:119 http://deb.debian.org/debian/ stretch/main libseccomp2 amd64 2.3.1-2.1+deb9u1 [40.7 kB] Get:120 http://deb.debian.org/debian/ stretch/main libsystemd0 amd64 232-25+deb9u12 [282 kB] Get:121 http://deb.debian.org/debian/ stretch/main libudev1 amd64 232-25+deb9u12 [126 kB] Get:122 http://deb.debian.org/debian/ stretch/main udev amd64 232-25+deb9u12 [1113 kB] Get:123 http://deb.debian.org/debian/ stretch/main systemd amd64 232-25+deb9u12 [2469 kB] Get:124 http://deb.debian.org/debian/ stretch/main ifupdown amd64 0.8.19 [76.8 kB] Get:125 http://deb.debian.org/debian/ stretch/main libelf1 amd64 0.168-1 [157 kB] Get:126 http://deb.debian.org/debian/ stretch/main libmnl0 amd64 1.0.4-2 [12.2 kB] Get:127 http://deb.debian.org/debian/ stretch/main iproute2 amd64 4.9.0-1+deb9u1 [635 kB] Get:128 http://deb.debian.org/debian/ stretch/main libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:129 http://deb.debian.org/debian/ stretch/main procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:130 http://deb.debian.org/debian/ stretch/main libdevmapper1.02.1 amd64 2:1.02.137-2 [170 kB] Get:131 http://deb.debian.org/debian/ stretch/main dmsetup amd64 2:1.02.137-2 [107 kB] Get:132 http://deb.debian.org/debian/ stretch/main libcryptsetup4 amd64 2:1.7.3-4 [109 kB] Get:133 http://deb.debian.org/debian/ stretch/main fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:134 http://deb.debian.org/debian/ stretch/main fonts-lato all 2.0-1 [2684 kB] Get:135 http://deb.debian.org/debian/ stretch/main libmpfr4 amd64 3.1.5-1 [556 kB] Get:136 http://deb.debian.org/debian/ stretch/main libsigsegv2 amd64 2.10-5 [28.9 kB] Get:137 http://deb.debian.org/debian/ stretch/main gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:138 http://deb.debian.org/debian/ stretch/main libassuan0 amd64 2.4.3-2 [42.5 kB] Get:139 http://deb.debian.org/debian/ stretch/main pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:140 http://deb.debian.org/debian/ stretch/main libnpth0 amd64 1.3-1 [14.6 kB] Get:141 http://deb.debian.org/debian/ stretch/main gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:142 http://deb.debian.org/debian/ stretch/main libksba8 amd64 1.3.5-2 [99.7 kB] Get:143 http://deb.debian.org/debian/ stretch/main gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:144 http://deb.debian.org/debian/ stretch/main libisc-export160 amd64 1:9.10.3.dfsg.P4-12.3+deb9u6 [335 kB] Get:145 http://deb.debian.org/debian/ stretch/main libdns-export162 amd64 1:9.10.3.dfsg.P4-12.3+deb9u6 [852 kB] Get:146 http://deb.debian.org/debian/ stretch/main isc-dhcp-client amd64 4.3.5-3+deb9u1 [325 kB] Get:147 http://deb.debian.org/debian/ stretch/main isc-dhcp-common amd64 4.3.5-3+deb9u1 [136 kB] Get:148 http://deb.debian.org/debian/ stretch/main bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:149 http://deb.debian.org/debian/ stretch/main dbus amd64 1.10.32-0+deb9u1 [213 kB] Get:150 http://deb.debian.org/debian/ stretch/main libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:151 http://deb.debian.org/debian/ stretch/main file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:152 http://deb.debian.org/debian/ stretch/main libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:153 http://deb.debian.org/debian/ stretch/main libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:154 http://deb.debian.org/debian/ stretch/main manpages all 4.10-2 [1222 kB] Get:155 http://deb.debian.org/debian/ stretch/main xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:156 http://deb.debian.org/debian/ stretch/main amap-align amd64 2.2-6 [129 kB] Get:157 http://deb.debian.org/debian/ stretch/main bedtools amd64 2.26.0+dfsg-3 [584 kB] Get:158 http://deb.debian.org/debian/ stretch/main bioperl-run all 1.7.1-3 [44.2 kB] Get:159 http://deb.debian.org/debian/ stretch/main libbio-perl-run-perl all 1.7.1-3 [816 kB] Get:160 http://deb.debian.org/debian/ stretch/main menu amd64 2.1.47+b1 [380 kB] Get:161 http://deb.debian.org/debian/ stretch/main blends-common all 0.6.96 [23.3 kB] Get:162 http://deb.debian.org/debian/ stretch/main clustalo amd64 1.2.4-1 [263 kB] Get:163 http://deb.debian.org/debian/ stretch/main clustalw amd64 2.1+lgpl-5 [286 kB] Get:164 http://deb.debian.org/debian/ stretch/main dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:165 http://deb.debian.org/debian/ stretch/main libhpdf-2.2.1 amd64 2.2.1-1.1+b1 [319 kB] Get:166 http://deb.debian.org/debian/ stretch/main emboss amd64 6.6.0+dfsg-6 [1058 kB] Get:167 http://deb.debian.org/debian/ stretch/main emboss-lib amd64 6.6.0+dfsg-6 [2773 kB] Get:168 http://deb.debian.org/debian/ stretch/main emboss-data all 6.6.0+dfsg-6 [61.1 MB] Get:169 http://deb.debian.org/debian/ stretch/main fonts-noto-mono all 20161116-1 [79.2 kB] Get:170 http://deb.debian.org/debian/ stretch/main mummer amd64 3.23+dfsg-2 [809 kB] Get:171 http://deb.debian.org/debian/ stretch/main fsa amd64 1.15.9+dfsg-3 [753 kB] Get:172 http://deb.debian.org/debian/ stretch/main libcupsimage2 amd64 2.2.1-8+deb9u6 [122 kB] Get:173 http://deb.debian.org/debian/ stretch/main libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:174 http://deb.debian.org/debian/ stretch/main libcups2 amd64 2.2.1-8+deb9u6 [307 kB] Get:175 http://deb.debian.org/debian/ stretch/main libopenjp2-7 amd64 2.1.2-1.1+deb9u4 [122 kB] Get:176 http://deb.debian.org/debian/ stretch/main ghostscript amd64 9.26a~dfsg-0+deb9u6 [99.2 kB] Get:177 http://deb.debian.org/debian/ stretch/main libgs9 amd64 9.26a~dfsg-0+deb9u6 [2213 kB] Get:178 http://deb.debian.org/debian/ stretch/main libgs9-common all 9.26a~dfsg-0+deb9u6 [5143 kB] Get:179 http://deb.debian.org/debian/ stretch/main libann0 amd64 1.1.2+doc-6 [24.9 kB] Get:180 http://deb.debian.org/debian/ stretch/main libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:181 http://deb.debian.org/debian/ stretch/main libcairo2 amd64 1.14.8-1 [771 kB] Get:182 http://deb.debian.org/debian/ stretch/main libgvc6 amd64 2.38.0-17 [639 kB] Get:183 http://deb.debian.org/debian/ stretch/main graphviz amd64 2.38.0-17 [802 kB] Get:184 http://deb.debian.org/debian/ stretch/main libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:185 http://deb.debian.org/debian/ stretch/main hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:186 http://deb.debian.org/debian/ stretch/main hyphy-common all 2.2.7+dfsg-1 [619 kB] Get:187 http://deb.debian.org/debian/ stretch/main libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:188 http://deb.debian.org/debian/ stretch/main libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:189 http://deb.debian.org/debian/ stretch/main libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:190 http://deb.debian.org/debian/ stretch/main libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:191 http://deb.debian.org/debian/ stretch/main librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:192 http://deb.debian.org/debian/ stretch/main libfabric1 amd64 1.4.0-1 [259 kB] Get:193 http://deb.debian.org/debian/ stretch/main libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:194 http://deb.debian.org/debian/ stretch/main libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:195 http://deb.debian.org/debian/ stretch/main libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:196 http://deb.debian.org/debian/ stretch/main libhwloc5 amd64 1.11.5-1 [105 kB] Get:197 http://deb.debian.org/debian/ stretch/main libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:198 http://deb.debian.org/debian/ stretch/main ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:199 http://deb.debian.org/debian/ stretch/main libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:200 http://deb.debian.org/debian/ stretch/main libopenmpi2 amd64 2.0.2-2 [2008 kB] Get:201 http://deb.debian.org/debian/ stretch/main hyphy-mpi amd64 2.2.7+dfsg-1+b2 [920 kB] Get:202 http://deb.debian.org/debian/ stretch/main libmodule-load-conditional-perl all 0.68-1 [17.3 kB] Get:203 http://deb.debian.org/debian/ stretch/main libarchive-extract-perl all 0.80-1 [24.9 kB] Get:204 http://deb.debian.org/debian/ stretch/main libtry-tiny-perl all 0.28-1 [22.7 kB] Get:205 http://deb.debian.org/debian/ stretch/main libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:206 http://deb.debian.org/debian/ stretch/main libvariable-magic-perl amd64 0.61-1 [45.1 kB] Get:207 http://deb.debian.org/debian/ stretch/main libb-hooks-endofscope-perl all 0.21-1 [16.3 kB] Get:208 http://deb.debian.org/debian/ stretch/main libcpan-changes-perl all 0.400002-1 [34.7 kB] Get:209 http://deb.debian.org/debian/ stretch/main libcupsfilters1 amd64 1.11.6-3+deb9u1 [129 kB] Get:210 http://deb.debian.org/debian/ stretch/main libdata-perl-perl all 0.002009-1 [50.5 kB] Get:211 http://deb.debian.org/debian/ stretch/main libdrm2 amd64 2.4.74-1 [36.2 kB] Get:212 http://deb.debian.org/debian/ stretch/main libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:213 http://deb.debian.org/debian/ stretch/main libfile-slurp-perl all 9999.19-6 [43.2 kB] Get:214 http://deb.debian.org/debian/ stretch/main libparams-validate-perl amd64 1.26-1 [66.0 kB] Get:215 http://deb.debian.org/debian/ stretch/main libgetopt-long-descriptive-perl all 0.100-1 [26.9 kB] Get:216 http://deb.debian.org/debian/ stretch/main libgts-bin amd64 0.7.6+darcs121130-4 [50.8 kB] Get:217 http://deb.debian.org/debian/ stretch/main libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:218 http://deb.debian.org/debian/ stretch/main beignet-opencl-icd amd64 1.3.0-4 [12.8 MB] Get:219 http://deb.debian.org/debian/ stretch/main libhmsbeagle1v5 amd64 2.1.2+20160831-5 [116 kB] Get:220 http://deb.debian.org/debian/ stretch/main libhts1 amd64 1.3.2-2 [257 kB] Get:221 http://deb.debian.org/debian/ stretch/main libmath-random-isaac-xs-perl amd64 1.004-2+b2 [17.5 kB] Get:222 http://deb.debian.org/debian/ stretch/main libmoox-handlesvia-perl all 0.001008-2 [22.1 kB] Get:223 http://deb.debian.org/debian/ stretch/main libpackage-stash-perl all 0.37-1 [20.8 kB] Get:224 http://deb.debian.org/debian/ stretch/main libsub-identify-perl amd64 0.12-2+b1 [11.5 kB] Get:225 http://deb.debian.org/debian/ stretch/main libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:226 http://deb.debian.org/debian/ stretch/main libnamespace-autoclean-perl all 0.28-1 [14.7 kB] Get:227 http://deb.debian.org/debian/ stretch/main libpackage-stash-xs-perl amd64 0.28-3+b1 [17.9 kB] Get:228 http://deb.debian.org/debian/ stretch/main libpath-tiny-perl all 0.100-1 [66.0 kB] Get:229 http://deb.debian.org/debian/ stretch/main libpod-markdown-perl all 3.005000-1 [32.7 kB] Get:230 http://deb.debian.org/debian/ stretch/main libpod-readme-perl all 1.1.2-1 [45.0 kB] Get:231 http://deb.debian.org/debian/ stretch/main libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:232 http://deb.debian.org/debian/ stretch/main libunicode-utf8-perl amd64 0.60-1+b3 [22.3 kB] Get:233 http://deb.debian.org/debian/ stretch/main libxtables12 amd64 1.6.0+snapshot20161117-6 [75.9 kB] Get:234 http://deb.debian.org/debian/ stretch/main lynx-cur all 2.8.9dev11-1 [240 kB] Get:235 http://deb.debian.org/debian/ stretch/main lynx amd64 2.8.9dev11-1 [632 kB] Get:236 http://deb.debian.org/debian/ stretch/main lynx-common all 2.8.9dev11-1 [1098 kB] Get:237 http://deb.debian.org/debian/ stretch/main maq amd64 0.7.1-7 [311 kB] Get:238 http://deb.debian.org/debian/ stretch/main mustang amd64 3.2.3-1 [113 kB] Get:239 http://deb.debian.org/debian/ stretch/main openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:240 http://deb.debian.org/debian/ stretch/main phylip amd64 1:3.696+dfsg-5 [942 kB] Get:241 http://deb.debian.org/debian/ stretch/main openmpi-common all 2.0.2-2 [149 kB] Get:242 http://deb.debian.org/debian/ stretch/main openmpi-bin amd64 2.0.2-2 [186 kB] Get:243 http://deb.debian.org/debian/ stretch/main phyml amd64 3:3.2.0+dfsg-7+b1 [1298 kB] Get:244 http://deb.debian.org/debian/ stretch/main prank amd64 0.0.150803-2 [374 kB] Get:245 http://deb.debian.org/debian/ stretch/main primer3 amd64 2.3.7-3 [173 kB] Get:246 http://deb.debian.org/debian/ stretch/main probalign amd64 1.4-5 [65.4 kB] Get:247 http://deb.debian.org/debian/ stretch/main probcons amd64 1.12-11 [107 kB] Get:248 http://deb.debian.org/debian/ stretch/main ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:249 http://deb.debian.org/debian/ stretch/main ruby-minitest all 5.9.0-1 [51.1 kB] Get:250 http://deb.debian.org/debian/ stretch/main ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:251 http://deb.debian.org/debian/ stretch/main ruby-power-assert all 0.3.0-1 [7902 B] Get:252 http://deb.debian.org/debian/ stretch/main ruby-test-unit all 3.1.7-2 [69.6 kB] Get:253 http://deb.debian.org/debian/ stretch/main libruby2.3 amd64 2.3.3-1+deb9u8 [3108 kB] Get:254 http://deb.debian.org/debian/ stretch/main ruby2.3 amd64 2.3.3-1+deb9u8 [189 kB] Get:255 http://deb.debian.org/debian/ stretch/main ruby amd64 1:2.3.3 [10.8 kB] Get:256 http://deb.debian.org/debian/ stretch/main rake all 10.5.0-2+deb9u1 [49.7 kB] Get:257 http://deb.debian.org/debian/ stretch/main raxml amd64 8.2.9+dfsg-1+b1 [1278 kB] Get:258 http://deb.debian.org/debian/ stretch/main samtools amd64 1.3.1-3 [254 kB] Get:259 http://deb.debian.org/debian/ stretch/main t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:260 http://deb.debian.org/debian/ stretch/main tigr-glimmer amd64 3.02b-1 [283 kB] Get:261 http://deb.debian.org/debian/ stretch/main unzip amd64 6.0-21+deb9u2 [172 kB] Get:262 http://deb.debian.org/debian/ stretch/main wise amd64 2.4.1-19 [993 kB] Get:263 http://deb.debian.org/debian/ stretch/main wise-data all 2.4.1-19 [108 kB] Get:264 http://deb.debian.org/debian/ stretch/main zip amd64 3.0-11+b1 [234 kB] Get:265 http://deb.debian.org/debian/ stretch/main bowtie amd64 1.1.2-6 [1618 kB] Get:266 http://deb.debian.org/debian/ stretch/main gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] Get:267 http://deb.debian.org/debian/ stretch/main med-config all 3.0.1 [17.1 kB] Get:268 http://deb.debian.org/debian/ stretch/main publicsuffix all 20190415.1030-0+deb9u1 [108 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 205 MB in 4s (47.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27430 files and directories currently installed.) Preparing to unpack .../libc6_2.24-11+deb9u4_amd64.deb ... Unpacking libc6:amd64 (2.24-11+deb9u4) over (2.19-18+deb8u10) ... Setting up libc6:amd64 (2.24-11+deb9u4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27429 files and directories currently installed.) Preparing to unpack .../gcc-6-base_6.3.0-18+deb9u1_amd64.deb ... Unpacking gcc-6-base:amd64 (6.3.0-18+deb9u1) ... Setting up gcc-6-base:amd64 (6.3.0-18+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27436 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6.3.0-18+deb9u1_amd64.deb ... Unpacking libgcc1:amd64 (1:6.3.0-18+deb9u1) over (1:4.9.2-10+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libgcc1:amd64 (1:6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libfdisk1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27436 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27442 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.9_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59.9) over (2.88dsf-59) ... Replacing files in old package initscripts (2.88dsf-59) ... Selecting previously unselected package init-system-helpers. Preparing to unpack .../init-system-helpers_1.48_all.deb ... Unpacking init-system-helpers (1.48) ... Replacing files in old package sysv-rc (2.88dsf-59) ... Setting up init-system-helpers (1.48) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27446 files and directories currently installed.) Preparing to unpack .../util-linux_2.29.2-1+deb9u1_amd64.deb ... Unpacking util-linux (2.29.2-1+deb9u1) over (2.25.2-6) ... Replacing files in old package initscripts (2.88dsf-59) ... Processing triggers for mime-support (3.58) ... Setting up util-linux (2.29.2-1+deb9u1) ... Installing new version of config file /etc/init.d/hwclock.sh ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27477 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.9_amd64.deb ... Unpacking initscripts (2.88dsf-59.9) over (2.88dsf-59) ... Setting up sysvinit-utils (2.88dsf-59.9) ... Setting up initscripts (2.88dsf-59.9) ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/umountfs ... Installing new version of config file /etc/init.d/umountroot ... Installing new version of config file /etc/default/rcS ... Installing new version of config file /etc/default/tmpfs ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27477 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.9_all.deb ... Unpacking sysv-rc (2.88dsf-59.9) over (2.88dsf-59) ... Setting up sysv-rc (2.88dsf-59.9) ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27475 files and directories currently installed.) Preparing to unpack .../perl-doc_5.24.1-3+deb9u7_all.deb ... Leaving 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.24.1-3+deb9u7) over (5.20.2-3+deb8u11) ... Preparing to unpack .../libclass-xsaccessor-perl_1.19-2+b7_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-2+b7) over (1.19-2+b4) ... Selecting previously unselected package liblua5.2-0:amd64. Preparing to unpack .../liblua5.2-0_5.2.4-1.1+b2_amd64.deb ... Unpacking liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../libnghttp2-14_1.18.1-1+deb9u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Selecting previously unselected package libssl1.0.2:amd64. Preparing to unpack .../libssl1.0.2_1.0.2u-1~deb9u1_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Preparing to unpack .../apache2-bin_2.4.25-3+deb9u9_amd64.deb ... Unpacking apache2-bin (2.4.25-3+deb9u9) over (2.4.10-10+deb8u12) ... Preparing to unpack .../libcpan-meta-perl_2.150010-1_all.deb ... Unpacking libcpan-meta-perl (2.150010-1) over (2.142690-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: perl-modules: dependency problems, but removing anyway as you requested: perl depends on perl-modules (>= 5.20.2-3+deb8u11). libmodule-build-perl depends on perl (>= 5.21.3) | libcpan-meta-perl (>= 2.142060); however: Version of perl on system is 5.20.2-3+deb8u11. Package libcpan-meta-perl is not configured yet. Package perl-modules which provides libcpan-meta-perl is to be removed. libcpan-meta-perl depends on perl (>= 5.21.5) | libjson-pp-perl (>= 2.27300); however: Version of perl on system is 5.20.2-3+deb8u11. Package libjson-pp-perl is not installed. Package perl-modules which provides libjson-pp-perl is to be removed. libcpan-meta-perl depends on perl (>= 5.21.5) | libjson-pp-perl (>= 2.27300); however: Version of perl on system is 5.20.2-3+deb8u11. Package libjson-pp-perl is not installed. Package perl-modules which provides libjson-pp-perl is to be removed. libcpan-meta-perl depends on perl (>= 5.21.5) | libjson-pp-perl (>= 2.27300); however: Version of perl on system is 5.20.2-3+deb8u11. Package libjson-pp-perl is not installed. Package perl-modules which provides libjson-pp-perl is to be removed. libmailtools-perl depends on libnet-perl; however: Package libnet-perl is not installed. Package perl-modules which provides libnet-perl is to be removed. libmodule-build-perl depends on perl (>= 5.21.3) | libcpan-meta-perl (>= 2.142060); however: Version of perl on system is 5.20.2-3+deb8u11. Package libcpan-meta-perl is not configured yet. Package perl-modules which provides libcpan-meta-perl is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27533 files and directories currently installed.) Removing perl-modules (5.20.2-3+deb8u11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26808 files and directories currently installed.) Preparing to unpack .../perl_5.24.1-3+deb9u7_amd64.deb ... Unpacking perl (5.24.1-3+deb9u7) over (5.20.2-3+deb8u11) ... Selecting previously unselected package perl-modules-5.24. Preparing to unpack .../perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libperl5.24:amd64. Preparing to unpack .../libperl5.24_5.24.1-3+deb9u7_amd64.deb ... Unpacking libperl5.24:amd64 (5.24.1-3+deb9u7) ... Preparing to unpack .../libapache2-mod-perl2_2.0.10-2+deb9u1_amd64.deb ... Unpacking libapache2-mod-perl2 (2.0.10-2+deb9u1) over (2.0.9~1624218-2+deb8u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28140 files and directories currently installed.) Removing libperl5.20 (5.20.2-3+deb8u11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28138 files and directories currently installed.) Preparing to unpack .../libfcgi-perl_0.78-2_amd64.deb ... Unpacking libfcgi-perl (0.78-2) over (0.77-1+deb8u1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../libnettle6_3.3-1+b2_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+b2) ... Selecting previously unselected package libhogweed4:amd64. 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Setting up python2.7-minimal (2.7.13-2+deb9u3) ... Setting up python-minimal (2.7.13-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28299 files and directories currently installed.) Preparing to unpack .../python_2.7.13-2_amd64.deb ... Unpacking python (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../libpython-stdlib_2.7.13-2_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../libgomp1_6.3.0-18+deb9u1_amd64.deb ... 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Unpacking init (1.48) over (1.22) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up init (1.48) ... Selecting previously unselected package liblz4-1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28361 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2+b1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28367 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.10_amd64.deb ... Unpacking apt (1.4.10) over (1.0.9.8.4) ... Selecting previously unselected package libapt-pkg5.0:amd64. Preparing to unpack .../libapt-pkg5.0_1.4.10_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libapt-pkg5.0:amd64 (1.4.10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28422 files and directories currently installed.) Removing fonts-droid (1:4.4.4r2-6) ... Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28388 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.11.0-3+deb9u2_amd64.deb ... Unpacking libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libip4tc0:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28400 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2.1+deb9u1_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... 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Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: considering deconfiguration of ifupdown, which would be broken by installation of systemd ... dpkg: yes, will deconfigure ifupdown (broken by systemd) dpkg: considering deconfiguration of udev, which would be broken by installation of systemd ... dpkg: yes, will deconfigure udev (broken by systemd) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28405 files and directories currently installed.) Preparing to unpack .../systemd_232-25+deb9u12_amd64.deb ... De-configuring udev (215-17+deb8u7) ... De-configuring ifupdown (0.7.53.1) ... Unpacking systemd (232-25+deb9u12) over (215-17+deb8u7) ... Preparing to unpack .../ifupdown_0.8.19_amd64.deb ... Unpacking ifupdown (0.8.19) over (0.7.53.1) ... Preparing to unpack .../udev_232-25+deb9u12_amd64.deb ... Unpacking udev (232-25+deb9u12) over (215-17+deb8u7) ... dpkg: warning: unable to delete old directory '/etc/modprobe.d': Directory not empty Selecting previously unselected package libelf1:amd64. Preparing to unpack .../libelf1_0.168-1_amd64.deb ... Unpacking libelf1:amd64 (0.168-1) ... Selecting previously unselected package libmnl0:amd64. Preparing to unpack .../libmnl0_1.0.4-2_amd64.deb ... Unpacking libmnl0:amd64 (1.0.4-2) ... Preparing to unpack .../iproute2_4.9.0-1+deb9u1_amd64.deb ... Unpacking iproute2 (4.9.0-1+deb9u1) over (3.16.0-2) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../libprocps6_2%3a3.3.12-3+deb9u1_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for dbus (1.8.22-0+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28538 files and directories currently installed.) Preparing to unpack .../procps_2%3a3.3.12-3+deb9u1_amd64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-3+deb9u1) over (2:3.3.9-9+deb8u1) ... Setting up procps (2:3.3.12-3+deb9u1) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28540 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.137-2_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Preparing to unpack .../dmsetup_2%3a1.02.137-2_amd64.deb ... Unpacking dmsetup (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.137-2) ... Setting up dmsetup (2:1.02.137-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28544 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.3-4_amd64.deb ... Unpacking libcryptsetup4:amd64 (2:1.7.3-4) over (2:1.6.6-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcryptsetup4:amd64 (2:1.7.3-4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package fonts-droid-fallback. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28544 files and directories currently installed.) Preparing to unpack .../fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../fonts-lato_2.0-1_all.deb ... Unpacking fonts-lato (2.0-1) ... Selecting previously unselected package libmpfr4:amd64. Preparing to unpack .../libmpfr4_3.1.5-1_amd64.deb ... Unpacking libmpfr4:amd64 (3.1.5-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-5_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libmpfr4:amd64 (3.1.5-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libsigsegv2:amd64 (2.10-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28601 files and directories currently installed.) Preparing to unpack .../gawk_1%3a4.1.4+dfsg-1_amd64.deb ... Unpacking gawk (1:4.1.4+dfsg-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../libassuan0_2.4.3-2_amd64.deb ... Unpacking libassuan0:amd64 (2.4.3-2) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../pinentry-curses_1.0.0-2_amd64.deb ... Unpacking pinentry-curses (1.0.0-2) ... Selecting previously unselected package libnpth0:amd64. Preparing to unpack .../libnpth0_1.3-1_amd64.deb ... Unpacking libnpth0:amd64 (1.3-1) ... Selecting previously unselected package gnupg-agent. Preparing to unpack .../gnupg-agent_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg-agent (2.1.18-8~deb9u4) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../libksba8_1.3.5-2_amd64.deb ... Unpacking libksba8:amd64 (1.3.5-2) ... Preparing to unpack .../gnupg_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg (2.1.18-8~deb9u4) over (1.4.18-7+deb8u5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libnpth0:amd64 (1.3-1) ... Setting up gnupg-agent (2.1.18-8~deb9u4) ... Setting up libksba8:amd64 (1.3.5-2) ... Setting up gnupg (2.1.18-8~deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libisc-export160. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28805 files and directories currently installed.) Preparing to unpack .../libisc-export160_1%3a9.10.3.dfsg.P4-12.3+deb9u6_amd64.deb ... Unpacking libisc-export160 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Selecting previously unselected package libdns-export162. Preparing to unpack .../libdns-export162_1%3a9.10.3.dfsg.P4-12.3+deb9u6_amd64.deb ... Unpacking libdns-export162 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Preparing to unpack .../isc-dhcp-client_4.3.5-3+deb9u1_amd64.deb ... Unpacking isc-dhcp-client (4.3.5-3+deb9u1) over (4.3.1-6+deb8u3) ... Preparing to unpack .../isc-dhcp-common_4.3.5-3+deb9u1_amd64.deb ... Unpacking isc-dhcp-common (4.3.5-3+deb9u1) over (4.3.1-6+deb8u3) ... Selecting previously unselected package bzip2. Preparing to unpack .../bzip2_1.0.6-8.1_amd64.deb ... Unpacking bzip2 (1.0.6-8.1) ... Preparing to unpack .../dbus_1.10.32-0+deb9u1_amd64.deb ... Unpacking dbus (1.10.32-0+deb9u1) over (1.8.22-0+deb8u1) ... Preparing to unpack .../libdbus-1-3_1.10.32-0+deb9u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.10.32-0+deb9u1) over (1.8.22-0+deb8u1) ... Preparing to unpack .../file_1%3a5.30-1+deb9u3_amd64.deb ... Unpacking file (1:5.30-1+deb9u3) over (1:5.22+15-2+deb8u4) ... Preparing to unpack .../libmagic1_1%3a5.30-1+deb9u3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.30-1+deb9u3) over (1:5.22+15-2+deb8u4) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../libmagic-mgc_1%3a5.30-1+deb9u3_amd64.deb ... Unpacking libmagic-mgc (1:5.30-1+deb9u3) ... Selecting previously unselected package manpages. Preparing to unpack .../manpages_4.10-2_all.deb ... Unpacking manpages (4.10-2) ... Selecting previously unselected package xz-utils. Preparing to unpack .../xz-utils_5.2.2-1.2+b1_amd64.deb ... Unpacking xz-utils (5.2.2-1.2+b1) ... Preparing to unpack .../amap-align_2.2-6_amd64.deb ... Unpacking amap-align (2.2-6) over (2.2-4) ... Preparing to unpack .../bedtools_2.26.0+dfsg-3_amd64.deb ... Unpacking bedtools (2.26.0+dfsg-3) over (2.21.0-1) ... Preparing to unpack .../bioperl-run_1.7.1-3_all.deb ... Unpacking bioperl-run (1.7.1-3) over (1.6.9-2) ... Preparing to unpack .../libbio-perl-run-perl_1.7.1-3_all.deb ... Unpacking libbio-perl-run-perl (1.7.1-3) over (1.6.9-2) ... Selecting previously unselected package menu. Preparing to unpack .../menu_2.1.47+b1_amd64.deb ... Unpacking menu (2.1.47+b1) ... Selecting previously unselected package blends-common. Preparing to unpack .../blends-common_0.6.96_all.deb ... Unpacking blends-common (0.6.96) ... Preparing to unpack .../clustalo_1.2.4-1_amd64.deb ... Unpacking clustalo (1.2.4-1) over (1.2.1-1) ... Preparing to unpack .../clustalw_2.1+lgpl-5_amd64.deb ... Unpacking clustalw (2.1+lgpl-5) over (2.1+lgpl-4) ... Selecting previously unselected package dirmngr. Preparing to unpack .../dirmngr_2.1.18-8~deb9u4_amd64.deb ... Unpacking dirmngr (2.1.18-8~deb9u4) ... Preparing to unpack .../libhpdf-2.2.1_2.2.1-1.1+b1_amd64.deb ... Unpacking libhpdf-2.2.1 (2.2.1-1.1+b1) over (2.2.1-1.1) ... Preparing to unpack .../emboss_6.6.0+dfsg-6_amd64.deb ... Unpacking emboss (6.6.0+dfsg-6) over (6.6.0+dfsg-1) ... Preparing to unpack .../emboss-lib_6.6.0+dfsg-6_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-6) over (6.6.0+dfsg-1) ... Preparing to unpack .../emboss-data_6.6.0+dfsg-6_all.deb ... Unpacking emboss-data (6.6.0+dfsg-6) over (6.6.0+dfsg-1) ... Selecting previously unselected package fonts-noto-mono. Preparing to unpack .../fonts-noto-mono_20161116-1_all.deb ... Unpacking fonts-noto-mono (20161116-1) ... Selecting previously unselected package mummer. Preparing to unpack .../mummer_3.23+dfsg-2_amd64.deb ... Unpacking mummer (3.23+dfsg-2) ... Selecting previously unselected package fsa. Preparing to unpack .../fsa_1.15.9+dfsg-3_amd64.deb ... Unpacking fsa (1.15.9+dfsg-3) ... Preparing to unpack .../libcupsimage2_2.2.1-8+deb9u6_amd64.deb ... Unpacking libcupsimage2:amd64 (2.2.1-8+deb9u6) over (1.7.5-11+deb8u2) ... Preparing to unpack .../libavahi-client3_0.6.32-2_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.32-2) over (0.6.31-5) ... Preparing to unpack .../libcups2_2.2.1-8+deb9u6_amd64.deb ... Unpacking libcups2:amd64 (2.2.1-8+deb9u6) over (1.7.5-11+deb8u2) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../libopenjp2-7_2.1.2-1.1+deb9u4_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.1.2-1.1+deb9u4) ... Preparing to unpack .../ghostscript_9.26a~dfsg-0+deb9u6_amd64.deb ... Unpacking ghostscript (9.26a~dfsg-0+deb9u6) over (9.06~dfsg-2+deb8u7) ... Preparing to unpack .../libgs9_9.26a~dfsg-0+deb9u6_amd64.deb ... Unpacking libgs9:amd64 (9.26a~dfsg-0+deb9u6) over (9.06~dfsg-2+deb8u7) ... Preparing to unpack .../libgs9-common_9.26a~dfsg-0+deb9u6_all.deb ... Unpacking libgs9-common (9.26a~dfsg-0+deb9u6) over (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package libann0. Preparing to unpack .../libann0_1.1.2+doc-6_amd64.deb ... Unpacking libann0 (1.1.2+doc-6) ... Selecting previously unselected package libgts-0.7-5:amd64. Preparing to unpack .../libgts-0.7-5_0.7.6+darcs121130-4_amd64.deb ... Unpacking libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Preparing to unpack .../libcairo2_1.14.8-1_amd64.deb ... Unpacking libcairo2:amd64 (1.14.8-1) over (1.14.0-2.1+deb8u2) ... Preparing to unpack .../libgvc6_2.38.0-17_amd64.deb ... Unpacking libgvc6 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../graphviz_2.38.0-17_amd64.deb ... Unpacking graphviz (2.38.0-17) over (2.38.0-7) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../libdivsufsort3_2.0.1-2_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-2) ... Preparing to unpack .../hmmer_3.1b2+dfsg-5_amd64.deb ... Unpacking hmmer (3.1b2+dfsg-5) over (3.1b1-3) ... Selecting previously unselected package hyphy-common. Preparing to unpack .../hyphy-common_2.2.7+dfsg-1_all.deb ... Unpacking hyphy-common (2.2.7+dfsg-1) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../libnl-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-3-200:amd64 (3.2.27-2) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../libnl-route-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.2.27-2) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../libibverbs1_1.2.1-2_amd64.deb ... Unpacking libibverbs1 (1.2.1-2) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../libpsm-infinipath1_3.3+19.g67c0807.open-3_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Selecting previously unselected package librdmacm1. Preparing to unpack .../librdmacm1_1.1.0-2_amd64.deb ... Unpacking librdmacm1 (1.1.0-2) ... Selecting previously unselected package libfabric1. Preparing to unpack .../libfabric1_1.4.0-1_amd64.deb ... Unpacking libfabric1 (1.4.0-1) ... Preparing to unpack .../libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../libnuma1_2.0.11-2.1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.11-2.1) ... Selecting previously unselected package libhwloc5:amd64. Preparing to unpack .../libhwloc5_1.11.5-1_amd64.deb ... Unpacking libhwloc5:amd64 (1.11.5-1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../libpciaccess0_0.13.4-1+b2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.13.4-1+b2) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../ocl-icd-libopencl1_2.2.11-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../libhwloc-plugins_1.11.5-1_amd64.deb ... Unpacking libhwloc-plugins (1.11.5-1) ... Selecting previously unselected package libopenmpi2:amd64. Preparing to unpack .../libopenmpi2_2.0.2-2_amd64.deb ... Unpacking libopenmpi2:amd64 (2.0.2-2) ... Selecting previously unselected package hyphy-mpi. Preparing to unpack .../hyphy-mpi_2.2.7+dfsg-1+b2_amd64.deb ... Unpacking hyphy-mpi (2.2.7+dfsg-1+b2) ... Selecting previously unselected package libmodule-load-conditional-perl. Preparing to unpack .../libmodule-load-conditional-perl_0.68-1_all.deb ... Unpacking libmodule-load-conditional-perl (0.68-1) ... Preparing to unpack .../libarchive-extract-perl_0.80-1_all.deb ... Unpacking libarchive-extract-perl (0.80-1) over (0.72-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../libtry-tiny-perl_0.28-1_all.deb ... Unpacking libtry-tiny-perl (0.28-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../libmodule-implementation-perl_0.09-1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../libvariable-magic-perl_0.61-1_amd64.deb ... Unpacking libvariable-magic-perl (0.61-1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../libb-hooks-endofscope-perl_0.21-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.21-1) ... Selecting previously unselected package libcpan-changes-perl. Preparing to unpack .../libcpan-changes-perl_0.400002-1_all.deb ... Unpacking libcpan-changes-perl (0.400002-1) ... Preparing to unpack .../libcupsfilters1_1.11.6-3+deb9u1_amd64.deb ... Unpacking libcupsfilters1:amd64 (1.11.6-3+deb9u1) over (1.0.61-5+deb8u3) ... Selecting previously unselected package libdata-perl-perl. Preparing to unpack .../libdata-perl-perl_0.002009-1_all.deb ... Unpacking libdata-perl-perl (0.002009-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../libdrm2_2.4.74-1_amd64.deb ... 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Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../libpackage-stash-perl_0.37-1_all.deb ... Unpacking libpackage-stash-perl (0.37-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../libsub-identify-perl_0.12-2+b1_amd64.deb ... Unpacking libsub-identify-perl (0.12-2+b1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../libnamespace-clean-perl_0.27-1_all.deb ... Unpacking libnamespace-clean-perl (0.27-1) ... Selecting previously unselected package libnamespace-autoclean-perl. Preparing to unpack .../libnamespace-autoclean-perl_0.28-1_all.deb ... Unpacking libnamespace-autoclean-perl (0.28-1) ... Selecting previously unselected package libpackage-stash-xs-perl. Preparing to unpack .../libpackage-stash-xs-perl_0.28-3+b1_amd64.deb ... Unpacking libpackage-stash-xs-perl (0.28-3+b1) ... Selecting previously unselected package libpath-tiny-perl. 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Preparing to unpack .../ruby_1%3a2.3.3_amd64.deb ... Unpacking ruby (1:2.3.3) over (1:2.1.5+deb8u2) ... Selecting previously unselected package rake. Preparing to unpack .../rake_10.5.0-2+deb9u1_all.deb ... Unpacking rake (10.5.0-2+deb9u1) ... Selecting previously unselected package raxml. Preparing to unpack .../raxml_8.2.9+dfsg-1+b1_amd64.deb ... Unpacking raxml (8.2.9+dfsg-1+b1) ... Preparing to unpack .../samtools_1.3.1-3_amd64.deb ... Unpacking samtools (1.3.1-3) over (0.1.19-1) ... Preparing to unpack .../t-coffee_11.00.8cbe486-5_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-5) over (11.00.8cbe486-1) ... Preparing to unpack .../tigr-glimmer_3.02b-1_amd64.deb ... Unpacking tigr-glimmer (3.02b-1) over (3.02-3) ... Selecting previously unselected package unzip. Preparing to unpack .../unzip_6.0-21+deb9u2_amd64.deb ... Unpacking unzip (6.0-21+deb9u2) ... Preparing to unpack .../wise_2.4.1-19_amd64.deb ... Unpacking wise (2.4.1-19) over (2.4.1-17) ... Preparing to unpack .../wise-data_2.4.1-19_all.deb ... Unpacking wise-data (2.4.1-19) over (2.4.1-17) ... Selecting previously unselected package zip. Preparing to unpack .../zip_3.0-11+b1_amd64.deb ... Unpacking zip (3.0-11+b1) ... Preparing to unpack .../bowtie_1.1.2-6_amd64.deb ... Unpacking bowtie (1.1.2-6) over (1.1.1-2) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../gnupg-l10n_2.1.18-8~deb9u4_all.deb ... Unpacking gnupg-l10n (2.1.18-8~deb9u4) ... Selecting previously unselected package med-config. Preparing to unpack .../med-config_3.0.1_all.deb ... Unpacking med-config (3.0.1) ... Selecting previously unselected package publicsuffix. Preparing to unpack .../publicsuffix_20190415.1030-0+deb9u1_all.deb ... Unpacking publicsuffix (20190415.1030-0+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up perl-modules-5.24 (5.24.1-3+deb9u7) ... Setting up libperl5.24:amd64 (5.24.1-3+deb9u7) ... Setting up perl (5.24.1-3+deb9u7) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Setting up perl-doc (5.24.1-3+deb9u7) ... Setting up libclass-xsaccessor-perl (1.19-2+b7) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libaprutil1:amd64 (1.5.4-3) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libaprutil1-ldap:amd64 (1.5.4-3) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up apache2-bin (2.4.25-3+deb9u9) ... Setting up libcpan-meta-perl (2.150010-1) ... Setting up libapache2-mod-perl2 (2.0.10-2+deb9u1) ... Setting up libfcgi-perl (0.78-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Setting up mime-support (3.60) ... Installing new version of config file /etc/mime.types ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up python (2.7.13-2) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up libmariadbclient18:amd64 (10.1.45-0+deb9u1) ... Setting up libdbi-perl (1.636-1+b1) ... Setting up libdbd-mysql-perl (4.041-2) ... Setting up libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcrypt-random-seed-perl (0.03-1) ... Setting up libmath-random-isaac-perl (1.003-1) ... Setting up libbytes-random-secure-perl (0.28-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libcrypt-ssleay-perl (0.73.04-2) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libyaml-libyaml-perl (0.63-2) ... Setting up libsub-name-perl (0.21-1) ... Setting up libindirect-perl (0.37-1+b1) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up perl-tk (1:804.033-1+b3) ... Setting up libpq5:amd64 (9.6.17-0+deb9u1) ... Setting up libdbd-pg-perl (3.5.3-1+b2) ... Setting up libbit-vector-perl (7.4-1+b2) ... Setting up libdate-calc-perl (6.4-1) ... Setting up libdate-calc-xs-perl (6.4-1+b2) ... Setting up libdbd-sqlite3-perl (1.54-1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Setting up libstaden-read11:amd64 (1.14.8-2) ... Setting up libbio-scf-perl (1.03-3) ... Setting up libparams-classify-perl (0.013-6+b1) ... Setting up libparams-util-perl (1.07-3+b1) ... Setting up libpadwalker-perl (2.2-2+b1) ... Setting up libconvert-binary-c-perl (0.78-1+b1) ... Setting up libb-hooks-op-check-perl (0.19-3+b1) ... Setting up liblexical-sealrequirehints-perl (0.010-1+b1) ... Setting up libmultidimensional-perl (0.012-1+b1) ... Setting up libtext-charwidth-perl (0.04-7+b5) ... Setting up libbareword-filehandles-perl (0.004-1+b1) ... Setting up libclone-perl (0.38-2+b1) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libace-perl (1.92-4+b1) ... Setting up libtext-iconv-perl (1.7-5+b4) ... Setting up libxml-libxslt-perl (1.95-1+b1) ... Setting up libbsd-resource-perl (1.2910-1+b1) ... Setting up libalgorithm-diff-xs-perl (0.04-4+b2) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libwebp6:amd64 (0.5.2-1) ... Setting up libgd3:amd64 (2.2.4-2+deb9u5) ... Setting up libgd-perl (2.53-3) ... Setting up libdevel-caller-perl (2.06-1+b4) ... Setting up libunicode-map-perl (0.112-11+b3) ... Setting up libtype-tiny-xs-perl (0.012-1+b2) ... Setting up libtext-soundex-perl (3.4-1+b4) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Setting up libossp-uuid-perl (1.6.2-1.5+b4) ... Setting up libio-pty-perl (1:1.08-1.1+b2) ... Setting up libipc-sharelite-perl (0.17-4) ... Setting up libclass-c3-xs-perl (0.14-1+b1) ... Setting up libdevel-lexalias-perl (0.05-1+b4) ... Setting up liblist-moreutils-perl (0.416-1+b1) ... Setting up ncbi-blast+-legacy (2.6.0-1) ... Setting up blast2 (1:2.6.0-1) ... Setting up libncbi6:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Setting up apt (1.4.10) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Created symlink /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer → /lib/systemd/system/apt-daily-upgrade.timer. Created symlink /etc/systemd/system/timers.target.wants/apt-daily.timer → /lib/systemd/system/apt-daily.timer. Removing obsolete conffile /etc/cron.daily/apt ... Setting up udev (232-25+deb9u12) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udevmonitor.conf ... Installing new version of config file /etc/udev/udev.conf ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. Removing obsolete conffile /etc/init.d/udev-finish ... Removing obsolete conffile /etc/init/udev-finish.conf ... Removing obsolete conffile /etc/init/udev-fallback-graphics.conf ... Removing obsolete conffile /etc/modprobe.d/fbdev-blacklist.conf ... Setting up systemd (232-25+deb9u12) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/timesyncd.conf ... Installing new version of config file /etc/systemd/user.conf ... Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service. addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.machine1.conf ... Removing obsolete conffile /etc/systemd/bootchart.conf ... Setting up libelf1:amd64 (0.168-1) ... Setting up libmnl0:amd64 (1.0.4-2) ... Setting up iproute2 (4.9.0-1+deb9u1) ... Installing new version of config file /etc/iproute2/rt_dsfield ... Installing new version of config file /etc/iproute2/rt_protos ... Setting up ifupdown (0.8.19) ... Installing new version of config file /etc/init.d/networking ... Created symlink /etc/systemd/system/multi-user.target.wants/networking.service → /lib/systemd/system/networking.service. Created symlink /etc/systemd/system/network-online.target.wants/networking.service → /lib/systemd/system/networking.service. Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up fonts-lato (2.0-1) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libisc-export160 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Setting up libdns-export162 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Setting up isc-dhcp-client (4.3.5-3+deb9u1) ... Installing new version of config file /etc/dhcp/dhclient-exit-hooks.d/rfc3442-classless-routes ... Installing new version of config file /etc/dhcp/dhclient.conf ... Setting up isc-dhcp-common (4.3.5-3+deb9u1) ... Setting up bzip2 (1.0.6-8.1) ... Setting up libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Setting up dbus (1.10.32-0+deb9u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Removing obsolete conffile /etc/dbus-1/session.conf ... Removing obsolete conffile /etc/dbus-1/system.conf ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Setting up file (1:5.30-1+deb9u3) ... Setting up manpages (4.10-2) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up amap-align (2.2-6) ... Setting up bedtools (2.26.0+dfsg-3) ... Setting up libbio-perl-run-perl (1.7.1-3) ... Setting up bioperl-run (1.7.1-3) ... Setting up menu (2.1.47+b1) ... Setting up clustalo (1.2.4-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up dirmngr (2.1.18-8~deb9u4) ... Setting up libhpdf-2.2.1 (2.2.1-1.1+b1) ... Setting up emboss-lib (6.6.0+dfsg-6) ... Setting up emboss-data (6.6.0+dfsg-6) ... Setting up emboss (6.6.0+dfsg-6) ... Setting up fonts-noto-mono (20161116-1) ... Setting up mummer (3.23+dfsg-2) ... Setting up fsa (1.15.9+dfsg-3) ... Setting up libavahi-client3:amd64 (0.6.32-2) ... Setting up libcups2:amd64 (2.2.1-8+deb9u6) ... Setting up libcupsimage2:amd64 (2.2.1-8+deb9u6) ... Setting up libopenjp2-7:amd64 (2.1.2-1.1+deb9u4) ... Setting up libgs9-common (9.26a~dfsg-0+deb9u6) ... Setting up libgs9:amd64 (9.26a~dfsg-0+deb9u6) ... Setting up ghostscript (9.26a~dfsg-0+deb9u6) ... Setting up libann0 (1.1.2+doc-6) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libgvc6 (2.38.0-17) ... Setting up graphviz (2.38.0-17) ... Setting up libdivsufsort3:amd64 (2.0.1-2) ... Setting up hmmer (3.1b2+dfsg-5) ... Setting up hyphy-common (2.2.7+dfsg-1) ... Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up libibverbs1 (1.2.1-2) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up librdmacm1 (1.1.0-2) ... Setting up libfabric1 (1.4.0-1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up libopenmpi2:amd64 (2.0.2-2) ... Setting up hyphy-mpi (2.2.7+dfsg-1+b2) ... Setting up libmodule-load-conditional-perl (0.68-1) ... Setting up libarchive-extract-perl (0.80-1) ... Setting up libtry-tiny-perl (0.28-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libvariable-magic-perl (0.61-1) ... Setting up libb-hooks-endofscope-perl (0.21-1) ... Setting up libcpan-changes-perl (0.400002-1) ... Setting up libcupsfilters1:amd64 (1.11.6-3+deb9u1) ... Setting up libdata-perl-perl (0.002009-1) ... Setting up libdrm2:amd64 (2.4.74-1) ... Setting up libdrm-intel1:amd64 (2.4.74-1) ... Setting up libfile-slurp-perl (9999.19-6) ... Setting up libparams-validate-perl (1.26-1) ... Setting up libgetopt-long-descriptive-perl (0.100-1) ... Setting up libgts-bin (0.7.6+darcs121130-4) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up beignet-opencl-icd:amd64 (1.3.0-4) ... Setting up libhmsbeagle1v5 (2.1.2+20160831-5) ... Setting up libhts1:amd64 (1.3.2-2) ... Setting up libmath-random-isaac-xs-perl (1.004-2+b2) ... Setting up libmoox-handlesvia-perl (0.001008-2) ... Setting up libpackage-stash-perl (0.37-1) ... Setting up libsub-identify-perl (0.12-2+b1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libnamespace-autoclean-perl (0.28-1) ... Setting up libpackage-stash-xs-perl (0.28-3+b1) ... Setting up libpath-tiny-perl (0.100-1) ... Setting up libpod-markdown-perl (3.005000-1) ... Setting up libpod-readme-perl (1.1.2-1) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libunicode-utf8-perl (0.60-1+b3) ... Setting up libxtables12:amd64 (1.6.0+snapshot20161117-6) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up lynx (2.8.9dev11-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx-cur (2.8.9dev11-1) ... Setting up maq (0.7.1-7) ... Setting up mustang (3.2.3-1) ... Setting up openssl (1.1.0l-1~deb9u1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up phylip (1:3.696+dfsg-5) ... Setting up openmpi-common (2.0.2-2) ... Setting up openmpi-bin (2.0.2-2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up phyml (3:3.2.0+dfsg-7+b1) ... Setting up prank (0.0.150803-2) ... Setting up primer3 (2.3.7-3) ... Installing new version of config file /etc/primer3_config/interpretations/stack_i.dh ... Installing new version of config file /etc/primer3_config/interpretations/stack_i.ds ... Installing new version of config file /etc/primer3_config/interpretations/stackmm_i_mm.dh ... Installing new version of config file /etc/primer3_config/interpretations/stackmm_i_mm.ds ... Installing new version of config file /etc/primer3_config/interpretations/tstack2_i.ds ... Installing new version of config file /etc/primer3_config/stackmm.dh ... Installing new version of config file /etc/primer3_config/stackmm.ds ... Installing new version of config file /etc/primer3_config/tstack2.ds ... Setting up probalign (1.4-5) ... Setting up probcons (1.12-11) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up ruby-minitest (5.9.0-1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up rake (10.5.0-2+deb9u1) ... Setting up libruby2.3:amd64 (2.3.3-1+deb9u8) ... Setting up ruby2.3 (2.3.3-1+deb9u8) ... Setting up ruby (1:2.3.3) ... Setting up raxml (8.2.9+dfsg-1+b1) ... Setting up samtools (1.3.1-3) ... Setting up t-coffee (11.00.8cbe486-5) ... Setting up tigr-glimmer (3.02b-1) ... Setting up unzip (6.0-21+deb9u2) ... Setting up wise-data (2.4.1-19) ... Setting up wise (2.4.1-19) ... Setting up zip (3.0-11+b1) ... Setting up bowtie (1.1.2-6) ... Setting up gnupg-l10n (2.1.18-8~deb9u4) ... Setting up publicsuffix (20190415.1030-0+deb9u1) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.6.96) ... Setting up med-config (3.0.1) ... Adding group `med' (GID 153) ... Done. Processing triggers for shared-mime-info (1.8-1+deb9u1) ... Processing triggers for fontconfig (2.11.0-6.7+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for systemd (232-25+deb9u12) ... 2m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-yf', 'dist-upgrade'] 2m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m11.4s DUMP: 660e5103244a20b75ca08c3f8741e16e - 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'show', '--no-all-versions', 'libbio-graphics-perl'] 2m11.6s DUMP: Package: libbio-graphics-perl Version: 2.40-1 Installed-Size: 1773 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, bioperl, libgd-gd2-perl Recommends: libbio-scf-perl, libgd-svg-perl, libstatistics-descriptive-perl Description-en: Generate GD images of Bio::Seq objects The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature, Das::Segment::Feature and Bio::DB::Graphics objects. It can be used to draw sequence annotations, physical (contig) maps, protein domains, or any other type of map in which a set of discrete ranges need to be laid out on the number line. Description-md5: 4c1e302f07a2493ac85971b05ef00176 Homepage: http://search.cpan.org/dist/Bio-Graphics/ Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::perl, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-graphics-perl/libbio-graphics-perl_2.40-1_all.deb Size: 611214 MD5sum: 32bbd008cf0597d007f023d25aabf9a2 SHA256: 3c8762debb178b713df7bc151a4b3d2fb755618910e83db89d8181a86e48f8c8 2m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'show', '--no-all-versions', 'libbio-graphics-perl'] 2m11.6s INFO: apt-cache knows about the following packages: libbio-graphics-perl 2m11.6s INFO: Running scripts pre_install 2m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_database-server'] 2m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_database-server'] 2m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_exceptions'] 2m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_exceptions'] 2m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_extras'] 2m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_extras'] 2m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture'] 2m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture'] 2m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy'] 2m11.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy'] 2m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy', 'libbio-graphics-perl'] 2m11.7s DUMP: libbio-graphics-perl: Installed: 2.40-1 Candidate: 2.40-1 Version table: *** 2.40-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 2m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy', 'libbio-graphics-perl'] 2m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-y', 'install', 'libbio-graphics-perl'] 2m12.0s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-graphics-perl is already the newest version (2.40-1). The following packages were automatically installed and are no longer required: ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libb-hooks-endofscope-perl libclass-c3-perl libclass-c3-xs-perl libcpan-changes-perl libcpan-meta-perl libdata-optlist-perl libdata-perl-perl libdata-section-perl libdns-export100 libdns-export162 libelf1 libfile-slurp-perl libgetopt-long-descriptive-perl libgnutls-deb0-28 libheap-perl libhogweed2 libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjasper1 liblog-message-perl liblog-message-simple-perl liblua5.1-0 libmnl0 libmodule-build-perl libmodule-implementation-perl libmodule-load-conditional-perl libmodule-pluggable-perl libmodule-signature-perl libmoox-handlesvia-perl libmro-compat-perl libmysqlclient18 libnamespace-autoclean-perl libnamespace-clean-perl libncbi6 libnettle4 libpackage-constants-perl libpackage-stash-perl libpackage-stash-xs-perl libparams-util-perl libparams-validate-perl libpath-tiny-perl libpng12-0 libpod-latex-perl libpod-markdown-perl libpod-readme-perl libregexp-common-perl libsoftware-license-perl libstaden-read1 libsub-exporter-perl libsub-identify-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libtry-tiny-perl libunicode-utf8-perl libvariable-magic-perl libvpx1 libxtables10 libxtables12 lynx-cur Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-y', 'install', 'libbio-graphics-perl'] 2m12.0s INFO: Running scripts post_install 2m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_install_exceptions'] 2m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_install_exceptions'] 2m12.0s INFO: Running scripts post_distupgrade 2m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_exceptions'] 2m12.0s DUMP: mode of '/usr/share/man/sl' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man1' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man8' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) 2m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_exceptions'] 2m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_zz_backports'] 2m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_distupgrade_zz_backports'] 2m12.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m13.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m13.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m14.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m14.7s INFO: Running scripts pre_install 2m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_database-server'] 2m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_database-server'] 2m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_exceptions'] 2m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_exceptions'] 2m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_extras'] 2m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_extras'] 2m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture'] 2m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture'] 2m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy'] 2m14.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy'] 2m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy', 'libbio-graphics-perl'] 2m14.9s DUMP: libbio-graphics-perl: Installed: 2.40-1 Candidate: 2.40-1 Version table: *** 2.40-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 2m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-cache', 'policy', 'libbio-graphics-perl'] 2m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-y', 'install', 'libbio-graphics-perl=2.40-1'] 2m15.2s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-graphics-perl is already the newest version (2.40-1). The following packages were automatically installed and are no longer required: ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libatm1 libb-hooks-endofscope-perl libclass-c3-perl libclass-c3-xs-perl libcpan-changes-perl libcpan-meta-perl libdata-optlist-perl libdata-perl-perl libdata-section-perl libdns-export100 libdns-export162 libelf1 libfile-slurp-perl libgetopt-long-descriptive-perl libgnutls-deb0-28 libheap-perl libhogweed2 libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjasper1 liblog-message-perl liblog-message-simple-perl liblua5.1-0 libmnl0 libmodule-build-perl libmodule-implementation-perl libmodule-load-conditional-perl libmodule-pluggable-perl libmodule-signature-perl libmoox-handlesvia-perl libmro-compat-perl libmysqlclient18 libnamespace-autoclean-perl libnamespace-clean-perl libncbi6 libnettle4 libpackage-constants-perl libpackage-stash-perl libpackage-stash-xs-perl libparams-util-perl libparams-validate-perl libpath-tiny-perl libpng12-0 libpod-latex-perl libpod-markdown-perl libpod-readme-perl libregexp-common-perl libsoftware-license-perl libstaden-read1 libsub-exporter-perl libsub-identify-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libtry-tiny-perl libunicode-utf8-perl libvariable-magic-perl libvpx1 libxtables10 libxtables12 lynx-cur Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', '-y', 'install', 'libbio-graphics-perl=2.40-1'] 2m15.2s INFO: Running scripts post_install 2m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_install_exceptions'] 2m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_install_exceptions'] 2m15.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m16.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m18.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', '-ac', '--ignore-obsolete'] 2m22.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', '-ac', '--ignore-obsolete'] 2m22.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m22.2s DUMP: 0.15.6 2m22.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m22.2s INFO: Running adequate version 0.15.6 now. 2m22.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'libbio-graphics-perl'] 2m22.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'libbio-graphics-perl'] 2m22.3s INFO: Running scripts pre_remove 2m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_exceptions'] 2m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/pre_remove_exceptions'] 2m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m31.4s DUMP: install ok installed acl acl 2.2.52-3+b1 install ok installed adduser adduser 3.115 install ok installed amap-align amap-align 2.2-6 install ok installed apache2-bin apache2-bin 2.4.25-3+deb9u9 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bedtools bedtools 2.26.0+dfsg-3 install ok installed beignet-opencl-icd:amd64 beignet-opencl-icd 1.3.0-4 install ok installed bioperl bioperl 1.7.1-2 install ok installed bioperl-run bioperl-run 1.7.1-3 install ok installed blast2 blast2 1:2.6.0-1 install ok installed blends-common blends-common 0.6.96 install ok installed bowtie bowtie 1.1.2-6 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed bwa bwa 0.7.15-2+deb9u1 install ok installed bzip2 bzip2 1.0.6-8.1 install ok installed ca-certificates ca-certificates 20200601~deb9u1 install ok installed clustalo clustalo 1.2.4-1 install ok installed clustalw clustalw 2.1+lgpl-5 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed dbus dbus 1.10.32-0+deb9u1 install ok installed debconf debconf 1.5.61 install ok installed debconf-i18n debconf-i18n 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed dialign dialign 2.2.1-8 install ok installed dialign-tx dialign-tx 1.0.2-9 install ok installed dialign-tx-data dialign-tx-data 1.0.2-9 install ok installed diffutils diffutils 1:3.5-3 install ok installed dirmngr dirmngr 2.1.18-8~deb9u4 install ok installed dmsetup dmsetup 2:1.02.137-2 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed emboss emboss 6.6.0+dfsg-6 install ok installed emboss-data emboss-data 6.6.0+dfsg-6 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-6 install ok installed exonerate exonerate 2.4.0-2 install ok installed file file 1:5.30-1+deb9u3 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fontconfig fontconfig 2.11.0-6.7+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 deinstall ok config-files fonts-droid fonts-droid 1:4.4.4r2-6 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-lato fonts-lato 2.0-1 install ok installed fonts-liberation fonts-liberation 1:1.07.4-2 install ok installed fonts-noto-mono fonts-noto-mono 20161116-1 install ok installed fsa fsa 1.15.9+dfsg-3 install ok installed gawk gawk 1:4.1.4+dfsg-1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed ghostscript ghostscript 9.26a~dfsg-0+deb9u6 install ok installed gnupg gnupg 2.1.18-8~deb9u4 install ok installed gnupg-agent gnupg-agent 2.1.18-8~deb9u4 install ok installed gnupg-l10n gnupg-l10n 2.1.18-8~deb9u4 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed graphviz graphviz 2.38.0-17 install ok installed grep grep 2.27-2 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.3 install ok installed gzip gzip 1.6-5+b1 install ok installed hmmer hmmer 3.1b2+dfsg-5 install ok installed hostname hostname 3.18+b1 install ok installed hyphy-common hyphy-common 2.2.7+dfsg-1 install ok installed hyphy-mpi hyphy-mpi 2.2.7+dfsg-1+b2 install ok installed ifupdown ifupdown 0.8.19 install ok installed infernal infernal 1.1.2-1 install ok installed init init 1.48 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed initscripts initscripts 2.88dsf-59.9 install ok installed insserv insserv 1.14.0-5.4+b1 install ok installed iproute2 iproute2 4.9.0-1+deb9u1 install ok installed isc-dhcp-client isc-dhcp-client 4.3.5-3+deb9u1 install ok installed isc-dhcp-common isc-dhcp-common 4.3.5-3+deb9u1 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-3 install ok installed krb5-locales krb5-locales 1.15-1+deb9u1 install ok installed libace-perl libace-perl 1.92-4+b1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.10-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-4+b2 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-3 install ok installed libann0 libann0 1.1.2+doc-6 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-1 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.10-2+deb9u1 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-1 install ok installed libapparmor1:amd64 libapparmor1 2.11.0-3+deb9u2 install ok installed libapr1:amd64 libapr1 1.5.2-5 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-3 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-3 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-3 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libarchive-extract-perl libarchive-extract-perl 0.80-1 install ok installed libargtable2-0 libargtable2-0 13-1 install ok installed libarray-compare-perl libarray-compare-perl 3.0.0-1 install ok installed libassuan0:amd64 libassuan0 2.4.3-2 install ok installed libatm1:amd64 libatm1 1:2.5.1-2 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.32-2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.32-2 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.32-2 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.21-1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.19-3+b1 install ok installed libbareword-filehandles-perl libbareword-filehandles-perl 0.004-1+b1 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.720-1 install ok installed libbio-graphics-perl libbio-graphics-perl 2.40-1 install ok installed libbio-perl-perl libbio-perl-perl 1.7.1-2 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.1-3 install ok installed libbio-scf-perl libbio-scf-perl 1.03-3 install ok installed libbit-vector-perl libbit-vector-perl 7.4-1+b2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2910-1+b1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1 install ok installed libbytes-random-secure-perl libbytes-random-secure-perl 0.28-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcache-cache-perl libcache-cache-perl 1.08-2 install ok installed libcairo2:amd64 libcairo2 1.14.8-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcap2:amd64 libcap2 1:2.25-1 install ok installed libcap2-bin libcap2-bin 1:2.25-1 install ok installed libcarp-clan-perl libcarp-clan-perl 6.06-1 install ok installed libcdt5 libcdt5 2.38.0-17 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.12-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.35-1 install ok installed libcgraph6 libcgraph6 2.38.0-17 install ok installed libclass-c3-perl libclass-c3-perl 0.32-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.14-1+b1 install ok installed libclass-inspector-perl libclass-inspector-perl 1.31-1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.12-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-2+b7 install ok installed libclone-perl libclone-perl 0.38-2+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.78-1+b1 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libcpan-changes-perl libcpan-changes-perl 0.400002-1 install ok installed libcpan-meta-perl libcpan-meta-perl 2.150010-1 install ok installed libcrypt-random-seed-perl libcrypt-random-seed-perl 0.03-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-2 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.73.04-2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.7.3-4 install ok installed libcups2:amd64 libcups2 2.2.1-8+deb9u6 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.11.6-3+deb9u1 install ok installed libcupsimage2:amd64 libcupsimage2 2.2.1-8+deb9u6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.52.1-5+deb9u10 install ok installed libdata-optlist-perl libdata-optlist-perl 0.110-1 install ok installed libdata-perl-perl libdata-perl-perl 0.002009-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdate-calc-perl libdate-calc-perl 6.4-1 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.4-1+b2 install ok installed libdate-manip-perl libdate-manip-perl 6.57-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.10-4+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.041-2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.5.3-1+b2 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.54-1 install ok installed libdbi-perl libdbi-perl 1.636-1+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.10.32-0+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-1+b4 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.14-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-1+b4 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.17-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.137-2 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-2 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libdns-export162 libdns-export162 1:9.10.3.dfsg.P4-12.3+deb9u6 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.74-1 install ok installed libdrm2:amd64 libdrm2 2.4.74-1 install ok installed libelf1:amd64 libelf1 0.168-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed liberror-perl liberror-perl 0.17024-1 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u3 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.042-1 install ok installed libfabric1 libfabric1 1.4.0-1 install ok installed libfcgi-perl libfcgi-perl 0.78-2 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-slurp-perl libfile-slurp-perl 9999.19-6 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.003-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u1 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgd-perl libgd-perl 2.53-3 install ok installed libgd-svg-perl libgd-svg-perl 0.33-1 install ok installed libgd3:amd64 libgd3 2.2.4-2+deb9u5 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgetopt-long-descriptive-perl libgetopt-long-descriptive-perl 0.100-1 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.50.3-2+deb9u2 install ok installed libglib2.0-data libglib2.0-data 2.50.3-2+deb9u2 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u5 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgraph-perl libgraph-perl 1:0.96-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1 install ok installed libgraphviz-perl libgraphviz-perl 2.22-1 install ok installed libgs9:amd64 libgs9 9.26a~dfsg-0+deb9u6 install ok installed libgs9-common libgs9-common 9.26a~dfsg-0+deb9u6 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.15-1+deb9u1 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4 install ok installed libgvc6 libgvc6 2.38.0-17 install ok installed libgvpr2 libgvpr2 2.38.0-17 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 1.4.2-1 install ok installed libheap-perl libheap-perl 0.80-3 install ok installed libhmsbeagle1v5 libhmsbeagle1v5 2.1.2+20160831-5 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+b2 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1+b1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.13-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-2 install ok installed libhts1:amd64 libhts1 1.3.2-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.11-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libhwloc-plugins libhwloc-plugins 1.11.5-1 install ok installed libhwloc5:amd64 libhwloc5 1.11.5-1 install ok installed libibverbs1 libibverbs1 1.2.1-2 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libidn2-0:amd64 libidn2-0 0.16-1+deb9u1 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-12 install ok installed libimport-into-perl libimport-into-perl 1.002005-1 install ok installed libindirect-perl libindirect-perl 0.37-1+b1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1.1+b2 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.044-1 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.111-2 install ok installed libip4tc0:amd64 libip4tc0 1.6.0+snapshot20161117-6 install ok installed libipc-run-perl libipc-run-perl 0.94-1+deb9u1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export160 libisc-export160 1:9.10.3.dfsg.P4-12.3+deb9u6 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.13-4.1 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2 install ok installed libjs-jquery libjs-jquery 3.1.1-2+deb9u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.15-1+deb9u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9 install ok installed libkmod2:amd64 libkmod2 23-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.15-1+deb9u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.15-1+deb9u1 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.8-4+deb9u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u4 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u4 install ok installed liblexical-sealrequirehints-perl liblexical-sealrequirehints-perl 0.010-1+b1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.416-1+b1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed libltdl7:amd64 libltdl7 2.4.6-2 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-8.1+b2 install ok installed liblua5.2-0:amd64 liblua5.2-0 5.2.4-1.1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmagic-mgc libmagic-mgc 1:5.30-1+deb9u3 install ok installed libmagic1:amd64 libmagic1 1:5.30-1+deb9u3 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmariadbclient18:amd64 libmariadbclient18 10.1.45-0+deb9u1 install ok installed libmath-derivative-perl libmath-derivative-perl 0.04-2 install ok installed libmath-random-isaac-perl libmath-random-isaac-perl 1.003-1 install ok installed libmath-random-isaac-xs-perl libmath-random-isaac-xs-perl 1.004-2+b2 install ok installed libmath-spline-perl libmath-spline-perl 0.02-1 install ok installed libmime-tools-perl libmime-tools-perl 5.508-1 install ok installed libmldbm-perl libmldbm-perl 2.05-2 install ok installed libmnl0:amd64 libmnl0 1.0.4-2 install ok installed libmodule-build-perl libmodule-build-perl 0.422000-1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-load-conditional-perl libmodule-load-conditional-perl 0.68-1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.2-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-2 install ok installed libmodule-signature-perl libmodule-signature-perl 0.81-1 install ok installed libmoo-perl libmoo-perl 2.002005-1 install ok installed libmoox-handlesvia-perl libmoox-handlesvia-perl 0.001008-2 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libmultidimensional-perl libmultidimensional-perl 0.012-1+b1 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.60-0+deb8u1 install ok installed libnamespace-autoclean-perl libnamespace-autoclean-perl 0.28-1 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-1 install ok installed libncbi6:amd64 libncbi6 6.1.20170106+dfsg1-0+deb9u1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnet-http-perl libnet-http-perl 6.12-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.80-1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnettle6:amd64 libnettle6 3.3-1+b2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.18.1-1+deb9u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.2.27-2 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.2.27-2 install ok installed libnpth0:amd64 libnpth0 1.3-1 install ok installed libnuma1:amd64 libnuma1 2.0.11-2.1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-1+deb9u1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.1.2-1.1+deb9u4 install ok installed libopenmpi2:amd64 libopenmpi2 2.0.2-2 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b4 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2 install ok installed libpackage-constants-perl libpackage-constants-perl 0.06-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.37-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.28-3+b1 install ok installed libpadwalker-perl libpadwalker-perl 2.2-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.40.5-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.40.5-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.40.5-1 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu5 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu5 install ok installed libparams-classify-perl libparams-classify-perl 0.013-6+b1 install ok installed libparams-util-perl libparams-util-perl 1.07-3+b1 install ok installed libparams-validate-perl libparams-validate-perl 1.26-1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967013+dfsg-1 install ok installed libpath-tiny-perl libpath-tiny-perl 0.100-1 install ok installed libpathplan4 libpathplan4 2.38.0-17 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.4-1+b2 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.34.0-1 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libpod-latex-perl libpod-latex-perl 0.61-2 install ok installed libpod-markdown-perl libpod-markdown-perl 3.005000-1 install ok installed libpod-readme-perl libpod-readme-perl 1.1.2-1 install ok installed libpostscript-perl libpostscript-perl 0.06-2 install ok installed libpq5:amd64 libpq5 9.6.17-0+deb9u1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libpsl5:amd64 libpsl5 0.17.0-3 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+19.g67c0807.open-3 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.13-2 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.13-2+deb9u3 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.13-2+deb9u3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed librdmacm1 librdmacm1 1.1.0-2 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed libregexp-common-perl libregexp-common-perl 2016060801-1 install ok installed librole-tiny-perl librole-tiny-perl 2.000005-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-1+b1 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libruby2.3:amd64 libruby2.3 2.3.3-1+deb9u8 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libseccomp2:amd64 libseccomp2 2.3.1-2.1+deb9u1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libset-scalar-perl libset-scalar-perl 1.29-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.10-5 install ok installed libslang2:amd64 libslang2 2.3.1-5 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.20-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103012-1 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libssh2-1:amd64 libssh2-1 1.7.0-1+deb9u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u1 install ok installed libstaden-read1 libstaden-read1 1.13.7-1 install ok installed libstaden-read11:amd64 libstaden-read11 1.14.8-2 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0612-1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libstrictures-perl libstrictures-perl 2.000003-1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-identify-perl libsub-identify-perl 0.12-2+b1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.21-1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-2 install ok installed libsvg-perl libsvg-perl 2.64-1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libterm-ui-perl libterm-ui-perl 0.46-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b5 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b4 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b4 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7.1 install ok installed libthai-data libthai-data 0.1.26-1 install ok installed libthai0:amd64 libthai0 0.1.26-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2 install ok installed libtiff5:amd64 libtiff5 4.0.8-2+deb9u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb9u1 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.29-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.28-1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.000005-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.012-1+b2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libunicode-map-perl libunicode-map-perl 0.112-11+b3 install ok installed libunicode-utf8-perl libunicode-utf8-perl 0.60-1+b3 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed liburi-perl liburi-perl 1.71-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-30 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libvariable-magic-perl libvariable-magic-perl 0.61-1 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u1 install ok installed libwebp6:amd64 libwebp6 0.5.2-1 install ok installed libwww-perl libwww-perl 6.15-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u1 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.12-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.12-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.38.0-17 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1+b2 install ok installed libxml-dom-perl libxml-dom-perl 1.44-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-2 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-5 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0128+dfsg-1+deb9u1 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.95-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-2+b1 install ok installed libxml-perl libxml-perl 0.08-2 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.56-1 install ok installed libxml-simple-perl libxml-simple-perl 2.22-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.40-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u2 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.29-2.1+deb9u2 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libxtables12:amd64 libxtables12 1.6.0+snapshot20161117-6 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.7-2 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.63-2 install ok installed libyaml-perl libyaml-perl 1.21-1 install ok installed login login 1:4.4-4.1 install ok installed lsb-base lsb-base 9.20161125 install ok installed lynx lynx 2.8.9dev11-1 install ok installed lynx-common lynx-common 2.8.9dev11-1 install ok installed lynx-cur lynx-cur 2.8.9dev11-1 install ok installed mafft mafft 7.307-1 install ok installed manpages manpages 4.10-2 install ok installed maq maq 0.7.1-7 install ok installed mawk mawk 1.3.3-17+b3 install ok installed med-config med-config 3.0.1 install ok installed menu menu 2.1.47+b1 install ok installed mime-support mime-support 3.60 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed mummer mummer 3.23+dfsg-2 install ok installed muscle muscle 1:3.8.31+dfsg-2 install ok installed mustang mustang 3.2.3-1 install ok installed mysql-common mysql-common 5.8+1.0.2 install ok installed ncbi-blast+ ncbi-blast+ 2.6.0-1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.6.0-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb9u1 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed netbase netbase 5.4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.11-1 install ok installed openmpi-bin openmpi-bin 2.0.2-2 install ok installed openmpi-common openmpi-common 2.0.2-2 install ok installed openssl openssl 1.1.0l-1~deb9u1 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl perl 5.24.1-3+deb9u7 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed perl-doc perl-doc 5.24.1-3+deb9u7 deinstall ok config-files perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed perl-tk perl-tk 1:804.033-1+b3 install ok installed phylip phylip 1:3.696+dfsg-5 install ok installed phyml phyml 3:3.2.0+dfsg-7+b1 install ok installed pinentry-curses pinentry-curses 1.0.0-2 install ok installed poa poa 2.0+20060928-4+b1 install ok installed poppler-data poppler-data 0.4.7-8 install ok installed prank prank 0.0.150803-2 install ok installed primer3 primer3 2.3.7-3 install ok installed probalign probalign 1.4-5 install ok installed probcons probcons 1.12-11 install ok installed procps procps 2:3.3.12-3+deb9u1 install ok installed proda proda 1.0-10 install ok installed publicsuffix publicsuffix 20190415.1030-0+deb9u1 install ok installed python python 2.7.13-2 install ok installed python-minimal python-minimal 2.7.13-2 install ok installed python2.7 python2.7 2.7.13-2+deb9u3 install ok installed python2.7-minimal python2.7-minimal 2.7.13-2+deb9u3 install ok installed rake rake 10.5.0-2+deb9u1 install ok installed raxml raxml 8.2.9+dfsg-1+b1 install ok installed readline-common readline-common 7.0-3 install ok installed rename rename 0.20-4 install ok installed ruby ruby 1:2.3.3 install ok installed ruby-did-you-mean ruby-did-you-mean 1.0.0-2 install ok installed ruby-minitest ruby-minitest 5.9.0-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 0.3.0-1 install ok installed ruby-test-unit ruby-test-unit 3.1.7-2 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed ruby2.3 ruby2.3 2.3.3-1+deb9u8 install ok installed rubygems-integration rubygems-integration 1.11 install ok installed samtools samtools 1.3.1-3 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.8-1+deb9u1 install ok installed sim4 sim4 0.0.20121010-4 install ok installed startpar startpar 0.59-3.1 install ok installed systemd systemd 232-25+deb9u12 install ok installed systemd-sysv systemd-sysv 232-25+deb9u12 install ok installed sysv-rc sysv-rc 2.88dsf-59.9 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed t-coffee t-coffee 11.00.8cbe486-5 install ok installed tar tar 1.29b-1.1 install ok installed tigr-glimmer tigr-glimmer 3.02b-1 install ok installed tm-align tm-align 20160521+dfsg-2 install ok installed tzdata tzdata 2020a-0+deb9u1 install ok installed ucf ucf 3.0036 install ok installed udev udev 232-25+deb9u12 install ok installed unzip unzip 6.0-21+deb9u2 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed wise wise 2.4.1-19 install ok installed wise-data wise-data 2.4.1-19 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2+b1 install ok installed xml-core xml-core 0.17 install ok installed xz-utils xz-utils 5.2.2-1.2+b1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 2m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', 'remove', 'amap-align', 'apache2-bin', 'bedtools', 'beignet-opencl-icd:amd64', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'gawk', 'ghostscript', 'gnupg', 'gnupg-agent', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ifupdown', 'infernal', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libargtable2-0', 'libarray-compare-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbareword-filehandles-perl', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbytes-random-secure-perl', 'libcache-cache-perl', 'libcairo2:amd64', 'libcarp-clan-perl', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-changes-perl', 'libcpan-meta-perl', 'libcrypt-random-seed-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libdata-optlist-perl', 'libdata-perl-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdns-export100', 'libdns-export162', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'liberror-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgetopt-long-descriptive-perl', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhmsbeagle1v5', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libice6:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libindirect-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libirs-export91', 'libisc-export160', 'libisc-export95', 'libisccfg-export90', 'libjasper1:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-moreutils-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadbclient18:amd64', 'libmath-derivative-perl', 'libmath-random-isaac-perl', 'libmath-random-isaac-xs-perl', 'libmath-spline-perl', 'libmime-tools-perl', 'libmldbm-perl', 'libmnl0:amd64', 'libmodule-build-perl', 'libmodule-implementation-perl', 'libmodule-load-conditional-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmoox-handlesvia-perl', 'libmpfr4:amd64', 'libmro-compat-perl', 'libmultidimensional-perl', 'libmysqlclient18:amd64', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi2:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-constants-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparse-recdescent-perl', 'libpath-tiny-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libpod-latex-perl', 'libpod-markdown-perl', 'libpod-readme-perl', 'libpostscript-perl', 'libpq5:amd64', 'libprocps3:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1', 'libregexp-common-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.1:amd64', 'libruby2.3:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libstaden-read1', 'libstaden-read11:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libunicode-map-perl', 'libunicode-utf8-perl', 'libunistring0:amd64', 'liburi-perl', 'libvariable-magic-perl', 'libvpx1:amd64', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxtables10', 'libxtables12:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'lynx-cur', 'mafft', 'maq', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssl', 'perl', 'perl-doc', 'perl-modules', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'pinentry-curses', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'raxml', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby2.1', 'ruby2.3', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip', 'libbio-graphics-perl'] 2m36.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'perl-modules' is not installed, so not removed Package 'fonts-droid' is not installed, so not removed The following packages were automatically installed and are no longer required: dirmngr gnupg-l10n libassuan0 libffi6 libgmp10 libgnutls30 libhogweed4 libksba8 libldap-2.4-2 libldap-common libnettle6 libnpth0 libp11-kit0 libreadline7 libsasl2-2 libsasl2-modules libsasl2-modules-db libsqlite3-0 libssl1.1 libtasn1-6 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: amap-align apache2-bin bedtools beignet-opencl-icd bioperl bioperl-run blast2 blends-common bowtie bwa bzip2 ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fsa gawk ghostscript gnupg gnupg-agent graphviz gsfonts hmmer hyphy-common hyphy-mpi ifupdown infernal iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libbytes-random-secure-perl libcache-cache-perl libcairo2 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-changes-perl libcpan-meta-perl libcrypt-random-seed-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-optlist-perl libdata-perl-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdns-export100 libdns-export162 libdrm-intel1 libdrm2 libelf1 libencode-locale-perl liberror-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-perl libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgetopt-long-descriptive-perl libgfortran3 libglib2.0-0 libglib2.0-data libgnutls-deb0-28 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhmsbeagle1v5 libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu57 libidn2-0 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadbclient18 libmath-derivative-perl libmath-random-isaac-perl libmath-random-isaac-xs-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmnl0 libmodule-build-perl libmodule-implementation-perl libmodule-load-conditional-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmoox-handlesvia-perl libmpfr4 libmro-compat-perl libmultidimensional-perl libmysqlclient18 libnamespace-autoclean-perl libnamespace-clean-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi2 libossp-uuid-perl libossp-uuid16 libpackage-constants-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpath-tiny-perl libpathplan4 libpciaccess0 libperl5.24 libpixman-1-0 libpng12-0 libpng16-16 libpod-latex-perl libpod-markdown-perl libpod-readme-perl libpostscript-perl libpq5 libprocps3 libpsl5 libpsm-infinipath1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librdmacm1 libregexp-common-perl librole-tiny-perl librtmp1 libruby2.1 libruby2.3 libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libssh2-1 libssl1.0.0 libssl1.0.2 libstaden-read1 libstaden-read11 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl libunicode-utf8-perl libunistring0 liburi-perl libvariable-magic-perl libvpx1 libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libxtables12 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-common lynx-cur mafft maq med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-doc perl-modules-5.24 perl-openssl-defaults perl-tk phylip phyml pinentry-curses poa poppler-data prank primer3 probalign probcons proda publicsuffix python python-minimal python2.7 python2.7-minimal rake raxml rename ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.1 ruby2.3 rubygems-integration samtools sgml-base shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xdg-user-dirs xml-core xz-utils zip 0 upgraded, 0 newly installed, 451 to remove and 0 not upgraded. After this operation, 1183 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 32910 files and directories currently installed.) Removing amap-align (2.2-6) ... Removing libapache2-reload-perl (0.13-1) ... Removing libapache-dbi-perl (1.12-1) ... Removing libapache2-mod-perl2 (2.0.10-2+deb9u1) ... Removing apache2-bin (2.4.25-3+deb9u9) ... Removing bedtools (2.26.0+dfsg-3) ... Removing phyml (3:3.2.0+dfsg-7+b1) ... Removing libhmsbeagle1v5 (2.1.2+20160831-5) ... Removing beignet-opencl-icd:amd64 (1.3.0-4) ... Removing libbio-graphics-perl (2.40-1) ... Removing bioperl-run (1.7.1-3) ... Removing bioperl (1.7.1-2) ... Removing blast2 (1:2.6.0-1) ... Removing med-config (3.0.1) ... Removing blends-common (0.6.96) ... Removing bowtie (1.1.2-6) ... Removing bwa (0.7.15-2+deb9u1) ... Removing bzip2 (1.0.6-8.1) ... Removing ruby (1:2.3.3) ... Removing ruby2.3 (2.3.3-1+deb9u8) ... Removing libruby2.3:amd64 (2.3.3-1+deb9u8) ... Removing libxml-simple-perl (2.22-1) ... Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing clustalo (1.2.4-1) ... Removing clustalw (2.1+lgpl-5) ... Removing dbus (1.10.32-0+deb9u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing dialign (2.2.1-8) ... Removing dialign-tx (1.0.2-9) ... Removing dialign-tx-data (1.0.2-9) ... Removing emboss (6.6.0+dfsg-6) ... Removing emboss-data (6.6.0+dfsg-6) ... Removing emboss-lib (6.6.0+dfsg-6) ... Removing fsa (1.15.9+dfsg-3) ... Removing exonerate (2.4.0-2) ... Removing file (1:5.30-1+deb9u3) ... Removing libgraphviz-perl (2.22-1) ... Removing graphviz (2.38.0-17) ... Removing libgvc6 (2.38.0-17) ... Removing libpangocairo-1.0-0:amd64 (1.40.5-1) ... Removing libpangoft2-1.0-0:amd64 (1.40.5-1) ... Removing libpango-1.0-0:amd64 (1.40.5-1) ... Removing fontconfig (2.11.0-6.7+b1) ... Removing perl-tk (1:804.033-1+b3) ... Removing libxft2:amd64 (2.3.2-1+b2) ... Removing libgd-svg-perl (0.33-1) ... Removing libgd-perl (2.53-3) ... Removing libgd3:amd64 (2.2.4-2+deb9u5) ... Removing fonts-dejavu-core (2.37-1) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing fonts-lato (2.0-1) ... Removing fonts-noto-mono (20161116-1) ... Removing mummer (3.23+dfsg-2) ... Removing gawk (1:4.1.4+dfsg-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing ghostscript (9.26a~dfsg-0+deb9u6) ... Removing gnupg (2.1.18-8~deb9u4) ... Removing gnupg-agent (2.1.18-8~deb9u4) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... Removing hmmer (3.1b2+dfsg-5) ... Removing hyphy-mpi (2.2.7+dfsg-1+b2) ... Removing hyphy-common (2.2.7+dfsg-1) ... Removing ifupdown (0.8.19) ... Removing infernal (1.1.2-1) ... Removing isc-dhcp-client (4.3.5-3+deb9u1) ... Removing iproute2 (4.9.0-1+deb9u1) ... Removing isc-dhcp-common (4.3.5-3+deb9u1) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-3) ... Removing krb5-locales (1.15-1+deb9u1) ... Removing libace-perl (1.92-4+b1) ... Removing libsoftware-license-perl (0.103012-1) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.32-1) ... Removing libalgorithm-c3-perl (0.10-1) ... Removing libalgorithm-diff-xs-perl (0.04-4+b2) ... Removing libalgorithm-diff-perl (1.19.03-1) ... Removing libalgorithm-munkres-perl (0.08-3) ... Removing libann0 (1.1.2+doc-6) ... Removing libaprutil1-ldap:amd64 (1.5.4-3) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Removing libaprutil1:amd64 (1.5.4-3) ... Removing libapr1:amd64 (1.5.2-5) ... Removing libarchive-extract-perl (0.80-1) ... Removing libargtable2-0 (13-1) ... Removing libarray-compare-perl (3.0.0-1) ... Removing libatm1:amd64 (1:2.5.1-2) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libgs9:amd64 (9.26a~dfsg-0+deb9u6) ... Removing libcupsfilters1:amd64 (1.11.6-3+deb9u1) ... Removing libpod-readme-perl (1.1.2-1) ... Removing libnamespace-autoclean-perl (0.28-1) ... Removing libnamespace-clean-perl (0.27-1) ... Removing libb-hooks-endofscope-perl (0.21-1) ... Removing libmultidimensional-perl (0.012-1+b1) ... Removing libbareword-filehandles-perl (0.004-1+b1) ... Removing libb-hooks-op-check-perl (0.19-3+b1) ... Removing libbio-asn1-entrezgene-perl (1.720-1) ... Removing libbio-perl-run-perl (1.7.1-3) ... Removing libbio-perl-perl (1.7.1-2) ... Removing libbio-scf-perl (1.03-3) ... Removing libdate-calc-xs-perl (6.4-1+b2) ... Removing libdate-calc-perl (6.4-1) ... Removing libbit-vector-perl (7.4-1+b2) ... Removing libbsd-resource-perl (1.2910-1+b1) ... Removing lynx-cur (2.8.9dev11-1) ... Removing lynx (2.8.9dev11-1) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libcrypt-ssleay-perl (0.73.04-2) ... Removing libbytes-random-secure-perl (0.28-1) ... Removing libcache-cache-perl (1.08-2) ... Removing libcairo2:amd64 (1.14.8-1) ... Removing libcarp-clan-perl (6.06-1) ... Removing libgvpr2 (2.38.0-17) ... Removing libcgraph6 (2.38.0-17) ... Removing libcdt5 (2.38.0-17) ... Removing libcgi-fast-perl (1:2.12-1) ... Removing libcgi-pm-perl (4.35-1) ... Removing libclass-c3-xs-perl (0.14-1+b1) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.20-1) ... Removing libclass-inspector-perl (1.31-1) ... Removing libmoox-handlesvia-perl (0.001008-2) ... Removing libmoo-perl (2.002005-1) ... Removing libdata-perl-perl (0.002009-1) ... Removing librole-tiny-perl (2.000005-1) ... Removing libclass-method-modifiers-perl (2.12-1) ... Removing libclass-xsaccessor-perl (1.19-2+b7) ... Removing libclone-perl (0.38-2+b1) ... Removing libconvert-binary-c-perl (0.78-1+b1) ... Removing libmime-tools-perl (5.508-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libcpan-changes-perl (0.400002-1) ... Removing libmodule-build-perl (0.422000-1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.150010-1) ... Removing libcrypt-random-seed-perl (0.03-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-2) ... Removing libcupsimage2:amd64 (2.2.1-8+deb9u6) ... Removing libstaden-read1 (1.13.7-1) ... Removing libstaden-read11:amd64 (1.14.8-2) ... Removing libgetopt-long-descriptive-perl (0.100-1) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.110-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libdate-manip-perl (6.57-1) ... Removing libthai0:amd64 (0.1.26-1) ... Removing libdatrie1:amd64 (0.2.10-4+b1) ... Removing libdbd-mysql-perl (4.041-2) ... Removing libdbd-pg-perl (3.5.3-1+b2) ... Removing libdbd-sqlite3-perl (1.54-1) ... Removing libdbi-perl (1.636-1+b1) ... Removing libdevel-lexalias-perl (0.05-1+b4) ... Removing libdevel-caller-perl (2.06-1+b4) ... Removing libdevel-globaldestruction-perl (0.14-1) ... Removing libdevel-symdump-perl (2.17-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libdivsufsort3:amd64 (2.0.1-2) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export162 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Removing libdrm-intel1:amd64 (2.4.74-1) ... Removing libdrm2:amd64 (2.4.74-1) ... Removing libelf1:amd64 (0.168-1) ... Removing liberror-perl (0.17024-1) ... Removing ncbi-blast+-legacy (2.6.0-1) ... Removing ncbi-blast+ (2.6.0-1) ... Removing python (2.7.13-2) ... Removing python2.7 (2.7.13-2+deb9u3) ... Removing libpython-stdlib:amd64 (2.7.13-2) ... Removing libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Removing libtype-tiny-perl (1.000005-1) ... Removing libsvg-graph-perl (0.02-2) ... Removing libstatistics-descriptive-perl (3.0612-1) ... Removing liblist-moreutils-perl (0.416-1+b1) ... Removing libexporter-tiny-perl (0.042-1) ... Removing openmpi-bin (2.0.2-2) ... Removing libopenmpi2:amd64 (2.0.2-2) ... Removing libfabric1 (1.4.0-1) ... Removing libfcgi-perl (0.78-2) ... Removing libfile-slurp-perl (9999.19-6) ... Removing libtree-dagnode-perl (1.29-1) ... Removing libfile-slurp-tiny-perl (0.003-1) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing libharfbuzz0b:amd64 (1.4.2-1) ... Removing libfreezethaw-perl (0.5001-1) ... Removing rename (0.20-4) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing mafft (7.307-1) ... Removing tm-align (20160521+dfsg-2) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing wise (2.4.1-19) ... Removing shared-mime-info (1.8-1+deb9u1) ... Removing libglib2.0-data (2.50.3-2+deb9u2) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libgraph-perl (1:0.96-2) ... Removing libgraphite2-3:amd64 (1.3.10-1) ... Removing libgs9-common (9.26a~dfsg-0+deb9u6) ... Removing libpq5:amd64 (9.6.17-0+deb9u1) ... Removing libgts-bin (0.7.6+darcs121130-4) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libheap-perl (0.80-3) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libhpdf-2.2.1 (2.2.1-1.1+b1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.13-1) ... Removing samtools (1.3.1-3) ... Removing libhts1:amd64 (1.3.2-2) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libhwloc-plugins (1.11.5-1) ... Removing libhwloc5:amd64 (1.11.5-1) ... Removing librdmacm1 (1.1.0-2) ... Removing libibverbs1 (1.2.1-2) ... Removing libsm6:amd64 (2:1.2.2-1+b3) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libxml-libxslt-perl (1.95-1+b1) ... Removing libxslt1.1:amd64 (1.1.29-2.1+deb9u2) ... Removing libijs-0.35:amd64 (0.35-12) ... Removing libimport-into-perl (1.002005-1) ... Removing libindirect-perl (0.37-1+b1) ... Removing libipc-run-perl (0.94-1+deb9u1) ... Removing libio-pty-perl (1:1.08-1.1+b2) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libmailtools-perl (2.18-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libio-string-perl (1.08-3) ... Removing libole-storage-lite-perl (0.19-1+deb9u1) ... Removing libio-stringy-perl (2.111-2) ... Removing libipc-sharelite-perl (0.17-4) ... Removing libisc-export160 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libtiff5:amd64 (4.0.8-2+deb9u5) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjbig2dec0:amd64 (0.13-4.1) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2) ... Removing libjs-jquery (3.1.1-2+deb9u1) ... Removing liblcms2-2:amd64 (2.8-4+deb9u1) ... Removing liblexical-sealrequirehints-perl (0.010-1+b1) ... Removing libterm-ui-perl (0.46-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing libltdl7:amd64 (2.4.6-2) ... Removing liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Removing liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Removing libmagic1:amd64 (1:5.30-1+deb9u3) ... Removing libmagic-mgc (1:5.30-1+deb9u3) ... Removing libmariadbclient18:amd64 (10.1.45-0+deb9u1) ... Removing libmath-spline-perl (0.02-1) ... Removing libmath-derivative-perl (0.04-2) ... Removing libmath-random-isaac-perl (1.003-1) ... Removing libmath-random-isaac-xs-perl (1.004-2+b2) ... Removing libmldbm-perl (2.05-2) ... Removing libmnl0:amd64 (1.0.4-2) ... Removing libparams-validate-perl (1.26-1) ... Removing libpackage-stash-perl (0.37-1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-load-conditional-perl (0.68-1) ... Removing libmodule-pluggable-perl (5.2-1) ... Removing libmodule-runtime-perl (0.014-2) ... Removing libmodule-signature-perl (0.81-1) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Removing libncbi6:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libnl-route-3-200:amd64 (3.2.27-2) ... Removing libnl-3-200:amd64 (3.2.27-2) ... Removing libnuma1:amd64 (2.0.11-2.1) ... Removing libopenjp2-7:amd64 (2.1.2-1.1+deb9u4) ... Removing libossp-uuid-perl (1.6.2-1.5+b4) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Removing libpackage-constants-perl (0.06-1) ... Removing libpackage-stash-xs-perl (0.28-3+b1) ... Removing libpadwalker-perl (2.2-2+b1) ... Removing libpaper-utils (1.1.24+nmu5) ... Removing libpaper1:amd64 (1.1.24+nmu5) ... Removing libparams-classify-perl (0.013-6+b1) ... Removing libparams-util-perl (1.07-3+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967013+dfsg-1) ... Removing libpath-tiny-perl (0.100-1) ... Removing libpathplan4 (2.38.0-17) ... Removing libpciaccess0:amd64 (0.13.4-1+b2) ... Removing libpixman-1-0:amd64 (0.34.0-1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libpod-latex-perl (0.61-2) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-markdown-perl (3.005000-1) ... Removing libpostscript-perl (0.06-2) ... Removing libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Removing libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Removing python-minimal (2.7.13-2) ... Removing python2.7-minimal (2.7.13-2+deb9u3) ... Removing libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing libregexp-common-perl (2016060801-1) ... Removing libset-scalar-perl (1.29-2) ... Removing libsigsegv2:amd64 (2.10-5) ... Removing libsort-naturally-perl (1.03-1) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libstrictures-perl (2.000003-1) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-identify-perl (0.12-2+b1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.21-1) ... Removing libsvg-perl (2.64-1) ... Removing libtask-weaken-perl (1.04-1) ... Removing libtext-soundex-perl (3.4-1+b4) ... Removing libtext-template-perl (1.46-1) ... Removing libthai-data (0.1.26-1) ... Removing libtie-ixhash-perl (1.23-2) ... Removing libtry-tiny-perl (0.28-1) ... Removing libtype-tiny-xs-perl (0.012-1+b2) ... Removing libunicode-map-perl (0.112-11+b3) ... Removing libunicode-utf8-perl (0.60-1+b3) ... Removing libvariable-magic-perl (0.61-1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libwebp6:amd64 (0.5.2-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxcb-shm0:amd64 (1.12-1) ... Removing libxcb-render0:amd64 (1.12-1) ... Removing libxdot4 (2.38.0-17) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxml-dom-xpath-perl (0.14-2) ... Removing libxml-dom-perl (1.44-2) ... Removing libxml-sax-writer-perl (0.56-1) ... Removing libxml-filter-buffertext-perl (1.01-5) ... Removing libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-perl (0.08-2) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml-twig-perl (1:3.50-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpath-perl (1.40-1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libxtables12:amd64 (1.6.0+snapshot20161117-6) ... Removing libyaml-libyaml-perl (0.63-2) ... Removing libyaml-perl (1.21-1) ... Removing lynx-common (2.8.9dev11-1) ... Removing maq (0.7.1-7) ... Removing menu (2.1.47+b1) ... Removing mime-support (3.60) ... Removing muscle (1:3.8.31+dfsg-2) ... Removing mustang (3.2.3-1) ... Removing mysql-common (5.8+1.0.2) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Removing ocl-icd-libopencl1:amd64 (2.2.11-1) ... Removing openmpi-common (2.0.2-2) ... Removing perl-doc (5.24.1-3+deb9u7) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing phylip (1:3.696+dfsg-5) ... Removing pinentry-curses (1.0.0-2) ... Removing poa (2.0+20060928-4+b1) ... Removing poppler-data (0.4.7-8) ... Removing prank (0.0.150803-2) ... Removing primer3 (2.3.7-3) ... Removing probalign (1.4-5) ... Removing probcons (1.12-11) ... Removing proda (1.0-10) ... Removing publicsuffix (20190415.1030-0+deb9u1) ... Removing raxml (8.2.9+dfsg-1+b1) ... Removing ruby-did-you-mean (1.0.0-2) ... Removing ruby-minitest (5.9.0-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.1.7-2) ... Removing ruby-power-assert (0.3.0-1) ... Removing xml-core (0.17) ... Removing sgml-base (1.29) ... Removing sim4 (0.0.20121010-4) ... Removing t-coffee (11.00.8cbe486-5) ... Removing tigr-glimmer (3.02b-1) ... Removing unzip (6.0-21+deb9u2) ... Removing wise-data (2.4.1-19) ... Removing x11-common (1:7.7+19) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.15-2+b1) ... Removing xz-utils (5.2.2-1.2+b1) ... Removing zip (3.0-11+b1) ... Removing rake (10.5.0-2+deb9u1) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing rubygems-integration (1.11) ... Removing libxml-parser-perl (2.44-2+b1) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing fonts-liberation (1:1.07.4-2) ... Removing libcups2:amd64 (2.2.1-8+deb9u6) ... Removing libavahi-client3:amd64 (0.6.32-2) ... Removing libavahi-common3:amd64 (0.6.32-2) ... Removing libavahi-common-data:amd64 (0.6.32-2) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1) ... Removing libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Removing libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Removing libexpat1:amd64 (2.2.0-2+deb9u3) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Removing libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libpsl5:amd64 (0.17.0-3) ... Removing libidn2-0:amd64 (0.16-1+deb9u1) ... Removing libkrb5-3:amd64 (1.15-1+deb9u1) ... Removing libk5crypto3:amd64 (1.15-1+deb9u1) ... Removing libkrb5support0:amd64 (1.15-1+deb9u1) ... Removing libkeyutils1:amd64 (1.5.9-9) ... Removing libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Removing libssh2-1:amd64 (1.7.0-1+deb9u1) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libx11-data (2:1.6.4-3+deb9u1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libyaml-0-2:amd64 (0.1.7-2) ... Removing ucf (3.0036) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libio-socket-ssl-perl (2.044-1) ... Removing libnet-ssleay-perl (1.80-1) ... Removing perl-openssl-defaults:amd64 (3) ... Removing libwww-perl (6.15-1) ... Removing ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-2) ... Removing libhtml-parser-perl (3.72-3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.01-1) ... Removing libnet-http-perl (6.12-1) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.4) ... Removing openssl (1.1.0l-1~deb9u1) ... Removing libhttp-message-perl (6.11-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2+deb9u1) ... Removing liburi-perl (1.71-1) ... Removing perl (5.24.1-3+deb9u7) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', 'remove', 'amap-align', 'apache2-bin', 'bedtools', 'beignet-opencl-icd:amd64', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'gawk', 'ghostscript', 'gnupg', 'gnupg-agent', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ifupdown', 'infernal', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libargtable2-0', 'libarray-compare-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbareword-filehandles-perl', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbytes-random-secure-perl', 'libcache-cache-perl', 'libcairo2:amd64', 'libcarp-clan-perl', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-changes-perl', 'libcpan-meta-perl', 'libcrypt-random-seed-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libdata-optlist-perl', 'libdata-perl-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdns-export100', 'libdns-export162', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'liberror-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgetopt-long-descriptive-perl', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhmsbeagle1v5', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libice6:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libindirect-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libirs-export91', 'libisc-export160', 'libisc-export95', 'libisccfg-export90', 'libjasper1:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-moreutils-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadbclient18:amd64', 'libmath-derivative-perl', 'libmath-random-isaac-perl', 'libmath-random-isaac-xs-perl', 'libmath-spline-perl', 'libmime-tools-perl', 'libmldbm-perl', 'libmnl0:amd64', 'libmodule-build-perl', 'libmodule-implementation-perl', 'libmodule-load-conditional-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmoox-handlesvia-perl', 'libmpfr4:amd64', 'libmro-compat-perl', 'libmultidimensional-perl', 'libmysqlclient18:amd64', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi2:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-constants-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparse-recdescent-perl', 'libpath-tiny-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libpod-latex-perl', 'libpod-markdown-perl', 'libpod-readme-perl', 'libpostscript-perl', 'libpq5:amd64', 'libprocps3:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1', 'libregexp-common-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.1:amd64', 'libruby2.3:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libstaden-read1', 'libstaden-read11:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libunicode-map-perl', 'libunicode-utf8-perl', 'libunistring0:amd64', 'liburi-perl', 'libvariable-magic-perl', 'libvpx1:amd64', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxtables10', 'libxtables12:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'lynx-cur', 'mafft', 'maq', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssl', 'perl', 'perl-doc', 'perl-modules', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'pinentry-curses', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'raxml', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby2.1', 'ruby2.3', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip', 'libbio-graphics-perl'] 2m36.5s INFO: Running scripts post_remove 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_remove_exceptions'] 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_remove_exceptions'] 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg', '--purge', 'amap-align', 'apache2-bin', 'bedtools', 'beignet-opencl-icd:amd64', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'gawk', 'ghostscript', 'gnupg', 'gnupg-agent', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ifupdown', 'infernal', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libargtable2-0', 'libarray-compare-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbareword-filehandles-perl', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbytes-random-secure-perl', 'libcache-cache-perl', 'libcairo2:amd64', 'libcarp-clan-perl', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-changes-perl', 'libcpan-meta-perl', 'libcrypt-random-seed-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libdata-optlist-perl', 'libdata-perl-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdns-export100', 'libdns-export162', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'liberror-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgetopt-long-descriptive-perl', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhmsbeagle1v5', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libice6:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libindirect-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libirs-export91', 'libisc-export160', 'libisc-export95', 'libisccfg-export90', 'libjasper1:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-moreutils-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadbclient18:amd64', 'libmath-derivative-perl', 'libmath-random-isaac-perl', 'libmath-random-isaac-xs-perl', 'libmath-spline-perl', 'libmime-tools-perl', 'libmldbm-perl', 'libmnl0:amd64', 'libmodule-build-perl', 'libmodule-implementation-perl', 'libmodule-load-conditional-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmoox-handlesvia-perl', 'libmpfr4:amd64', 'libmro-compat-perl', 'libmultidimensional-perl', 'libmysqlclient18:amd64', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi2:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-constants-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparse-recdescent-perl', 'libpath-tiny-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libpod-latex-perl', 'libpod-markdown-perl', 'libpod-readme-perl', 'libpostscript-perl', 'libpq5:amd64', 'libprocps3:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1', 'libregexp-common-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.1:amd64', 'libruby2.3:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libstaden-read1', 'libstaden-read11:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libunicode-map-perl', 'libunicode-utf8-perl', 'libunistring0:amd64', 'liburi-perl', 'libvariable-magic-perl', 'libvpx1:amd64', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxtables10', 'libxtables12:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'lynx-cur', 'mafft', 'maq', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssl', 'perl', 'perl-doc', 'perl-modules', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'pinentry-curses', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'raxml', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby2.1', 'ruby2.3', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip'] 2m38.1s DUMP: dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove apache2-bin which isn't installed (Reading database ... 8363 files and directories currently installed.) Purging configuration files for bedtools (2.26.0+dfsg-3) ... Purging configuration files for beignet-opencl-icd:amd64 (1.3.0-4) ... dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed Purging configuration files for blends-common (0.6.96) ... dpkg: warning: ignoring request to remove bowtie which isn't installed Purging configuration files for bwa (0.7.15-2+deb9u1) ... dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-5) ... Purging configuration files for dbus (1.10.32-0+deb9u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.11.0-6.7+b1) ... Purging configuration files for fontconfig-config (2.11.0-6.7) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... Purging configuration files for fonts-droid (1:4.4.4r2-6) ... Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed Purging configuration files for fonts-noto-mono (20161116-1) ... dpkg: warning: ignoring request to remove fsa which isn't installed dpkg: warning: ignoring request to remove gawk which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed Purging configuration files for gnupg-agent (2.1.18-8~deb9u4) ... Purging configuration files for graphviz (2.38.0-17) ... Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove hyphy-common which isn't installed dpkg: warning: ignoring request to remove hyphy-mpi which isn't installed Purging configuration files for ifupdown (0.8.19) ... dpkg: warning: ignoring request to remove infernal which isn't installed Purging configuration files for iproute2 (4.9.0-1+deb9u1) ... Purging configuration files for isc-dhcp-client (4.3.5-3+deb9u1) ... dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed Purging configuration files for javascript-common (11) ... Purging configuration files for kalign (1:2.03+20110620-3) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.10-2+deb9u1) ... dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libarchive-extract-perl which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libatm1 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libb-hooks-endofscope-perl which isn't installed dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove libbareword-filehandles-perl which isn't installed dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libbio-scf-perl which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libbytes-random-secure-perl which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libcpan-changes-perl which isn't installed dpkg: warning: ignoring request to remove libcpan-meta-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-random-seed-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcupsfilters1 which isn't installed dpkg: warning: ignoring request to remove libcupsimage2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libdata-perl-perl which isn't installed dpkg: warning: ignoring request to remove libdata-section-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-xs-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-globaldestruction-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-lexalias-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed Purging configuration files for libdivsufsort3:amd64 (2.0.1-2) ... Purging configuration files for libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libdns-export162 which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd-svg-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed dpkg: warning: ignoring request to remove libgetopt-long-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libgs9 which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed Purging configuration files for libgvc6 (2.38.0-17) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libheap-perl which isn't installed dpkg: warning: ignoring request to remove libhmsbeagle1v5 which isn't installed Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libhpdf-2.2.1 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhts1 which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libijs-0.35 which isn't installed dpkg: warning: ignoring request to remove libimport-into-perl which isn't installed dpkg: warning: ignoring request to remove libindirect-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libipc-sharelite-perl which isn't installed Purging configuration files for libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libisc-export160 which isn't installed Purging configuration files for libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjbig2dec0 which isn't installed dpkg: warning: ignoring request to remove libjcode-pm-perl which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblexical-sealrequirehints-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove liblua5.1-0 which isn't installed dpkg: warning: ignoring request to remove liblua5.2-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.30-1+deb9u3) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmariadbclient18 which isn't installed dpkg: warning: ignoring request to remove libmath-derivative-perl which isn't installed dpkg: warning: ignoring request to remove libmath-random-isaac-perl which isn't installed dpkg: warning: ignoring request to remove libmath-random-isaac-xs-perl which isn't installed dpkg: warning: ignoring request to remove libmath-spline-perl which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed dpkg: warning: ignoring request to remove libmnl0 which isn't installed Purging configuration files for libmodule-build-perl (0.422000-1) ... dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-load-conditional-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-pluggable-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-signature-perl which isn't installed dpkg: warning: ignoring request to remove libmoo-perl which isn't installed dpkg: warning: ignoring request to remove libmoox-handlesvia-perl which isn't installed dpkg: warning: ignoring request to remove libmpfr4 which isn't installed dpkg: warning: ignoring request to remove libmro-compat-perl which isn't installed dpkg: warning: ignoring request to remove libmultidimensional-perl which isn't installed Purging configuration files for libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... dpkg: warning: ignoring request to remove libnamespace-autoclean-perl which isn't installed dpkg: warning: ignoring request to remove libnamespace-clean-perl which isn't installed dpkg: warning: ignoring request to remove libncbi6 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.2.27-2) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libopenmpi2 which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid16 which isn't installed dpkg: warning: ignoring request to remove libpackage-constants-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed dpkg: warning: ignoring request to remove libpadwalker-perl which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.24+nmu5) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparams-util-perl which isn't installed dpkg: warning: ignoring request to remove libparams-validate-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libpath-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... dpkg: warning: ignoring request to remove libpng16-16 which isn't installed Purging configuration files for libpod-latex-perl (0.61-2) ... dpkg: warning: ignoring request to remove libpod-markdown-perl which isn't installed dpkg: warning: ignoring request to remove libpod-readme-perl which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed Purging configuration files for libprocps3:amd64 (2:3.3.9-9+deb8u1) ... dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpsm-infinipath1 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed Purging configuration files for libruby2.1:amd64 (2.1.5-2+deb8u3) ... dpkg: warning: ignoring request to remove libruby2.3 which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsoftware-license-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Purging configuration files for libstaden-read1 (1.13.7-1) ... dpkg: warning: ignoring request to remove libstaden-read11 which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove libterm-ui-perl which isn't installed dpkg: warning: ignoring request to remove libtext-soundex-perl which isn't installed dpkg: warning: ignoring request to remove libtext-template-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed dpkg: warning: ignoring request to remove libunicode-utf8-perl which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed Purging configuration files for libvpx1:amd64 (1.3.0-3+deb8u1) ... dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxdot4 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml-dom-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-filter-buffertext-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (0.99+dfsg-2) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed Purging configuration files for libxtables10 (1.4.21-2+b1) ... dpkg: warning: ignoring request to remove libxtables12 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed Purging configuration files for lynx (2.8.9dev11-1) ... Purging configuration files for lynx-common (2.8.9dev11-1) ... dpkg: warning: ignoring request to remove lynx-cur which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove maq which isn't installed Purging configuration files for med-config (3.0.1) ... Purging configuration files for menu (2.1.47+b1) ... Purging configuration files for mime-support (3.60) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Purging configuration files for mysql-common (5.8+1.0.2) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Purging configuration files for netbase (5.4) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openmpi-bin (2.0.2-2) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssl (1.1.0l-1~deb9u1) ... Purging configuration files for perl (5.24.1-3+deb9u7) ... Purging configuration files for perl-doc (5.24.1-3+deb9u7) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for poppler-data (0.4.7-8) ... dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for primer3 (2.3.7-3) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python (2.7.13-2) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.13-2+deb9u3) ... dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby2.1 which isn't installed dpkg: warning: ignoring request to remove ruby2.3 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed Purging configuration files for samtools (1.3.1-3) ... Purging configuration files for sgml-base (1.29) ... Purging configuration files for shared-mime-info (1.8-1+deb9u1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for ucf (3.0036) ... Purging configuration files for unzip (6.0-21+deb9u2) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+19) ... Purging configuration files for xdg-user-dirs (0.15-2+b1) ... dpkg: warning: while removing xdg-user-dirs, directory '/etc/X11' not empty so not removed Purging configuration files for xml-core (0.17) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed Processing triggers for systemd (232-25+deb9u12) ... 2m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg', '--purge', 'amap-align', 'apache2-bin', 'bedtools', 'beignet-opencl-icd:amd64', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'gawk', 'ghostscript', 'gnupg', 'gnupg-agent', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ifupdown', 'infernal', 'iproute2', 'isc-dhcp-client', 'isc-dhcp-common', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libargtable2-0', 'libarray-compare-perl', 'libatm1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbareword-filehandles-perl', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbytes-random-secure-perl', 'libcache-cache-perl', 'libcairo2:amd64', 'libcarp-clan-perl', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-changes-perl', 'libcpan-meta-perl', 'libcrypt-random-seed-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libdata-optlist-perl', 'libdata-perl-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdns-export100', 'libdns-export162', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'liberror-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgetopt-long-descriptive-perl', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhmsbeagle1v5', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libice6:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libindirect-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libirs-export91', 'libisc-export160', 'libisc-export95', 'libisccfg-export90', 'libjasper1:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-moreutils-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadbclient18:amd64', 'libmath-derivative-perl', 'libmath-random-isaac-perl', 'libmath-random-isaac-xs-perl', 'libmath-spline-perl', 'libmime-tools-perl', 'libmldbm-perl', 'libmnl0:amd64', 'libmodule-build-perl', 'libmodule-implementation-perl', 'libmodule-load-conditional-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmoox-handlesvia-perl', 'libmpfr4:amd64', 'libmro-compat-perl', 'libmultidimensional-perl', 'libmysqlclient18:amd64', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncbi6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle4:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi2:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-constants-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparse-recdescent-perl', 'libpath-tiny-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libpod-latex-perl', 'libpod-markdown-perl', 'libpod-readme-perl', 'libpostscript-perl', 'libpq5:amd64', 'libprocps3:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1', 'libregexp-common-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.1:amd64', 'libruby2.3:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libstaden-read1', 'libstaden-read11:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libterm-ui-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libunicode-map-perl', 'libunicode-utf8-perl', 'libunistring0:amd64', 'liburi-perl', 'libvariable-magic-perl', 'libvpx1:amd64', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxtables10', 'libxtables12:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'lynx-cur', 'mafft', 'maq', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssl', 'perl', 'perl-doc', 'perl-modules', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'pinentry-curses', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'raxml', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby2.1', 'ruby2.3', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip'] 2m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg', '--purge', 'libbio-graphics-perl'] 2m38.1s DUMP: dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed 2m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg', '--purge', 'libbio-graphics-perl'] 2m38.1s INFO: Running scripts post_purge 2m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_purge_exceptions'] 2m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_purge_exceptions'] 2m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg', '--purge', '--pending'] 2m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg', '--purge', '--pending'] 2m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg', '--remove', '--pending'] 2m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg', '--remove', '--pending'] 2m38.1s INFO: Running scripts post_test 2m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_test_exceptions'] 2m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'tmp/scripts/post_test_exceptions'] 2m38.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m38.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg-divert', '--list'] 2m38.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'dpkg-divert', '--list'] 2m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', 'clean'] 2m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66', 'apt-get', 'clean'] 2m38.7s DEBUG: Recording chroot state 2m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/shm'] 2m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/shm'] 2m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/console'] 2m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/console'] 2m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/ptmx'] 2m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/ptmx'] 2m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/pts'] 2m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/dev/pts'] 2m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/proc'] 2m39.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66/proc'] 2m39.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m39.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2dgqrx66'] 2m39.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2dgqrx66 2m39.8s INFO: PASS: Upgrading between Debian distributions. 2m39.8s INFO: PASS: All tests. 2m39.8s INFO: piuparts run ends. ret=0 End: 2022-11-17 16:24:28 GMT