Start: 2022-11-03 13:28:13 GMT [jessie] Package: ncbi-tools-x11 Source: ncbi-tools6 Version: 6.1.20120620-8 Installed-Size: 2797 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libvibrant6b (<< 6.1.20120620.1), libvibrant6b (>= 6.1.20120620), libc6 (>= 2.4) Suggests: blast2, ncbi-tools-bin Description: NCBI libraries for biology applications (X-based utilities) Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description-md5: d0eef02c68ea048bf0b8710f46afdc1e Tag: biology::peptidic, field::biology, field::biology:bioinformatics, field::biology:structural, implemented-in::c, interface::3d, interface::x11, network::client, role::program, science::visualisation, scope::utility, uitoolkit::motif, use::analysing, use::calculating, use::editing, use::searching, use::viewing, x11::application Section: science Priority: optional Filename: pool/main/n/ncbi-tools6/ncbi-tools-x11_6.1.20120620-8_amd64.deb Size: 1131148 MD5sum: 800b78a044deaf3f2529fdfda8020b07 SHA1: 655e4f3c257001f8eab0f8f6823a5f24c10d25c4 SHA256: 1efe89c91df5c6f2bbe2602dc8d423910373bf86f61812020e7c7dcce6369f2d [stretch] Package: ncbi-tools-x11 Source: ncbi-tools6 Version: 6.1.20170106+dfsg1-0+deb9u1 Installed-Size: 2745 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libvibrant6b (<< 6.1.20170106+dfsg1.1), libvibrant6b (>= 6.1.20170106+dfsg1), libc6 (>= 2.4) Suggests: ncbi-tools-bin Description: NCBI libraries for biology applications (X-based utilities) Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description-md5: d0eef02c68ea048bf0b8710f46afdc1e Tag: biology::peptidic, field::biology, field::biology:bioinformatics, field::biology:structural, implemented-in::c, interface::3d, interface::graphical, interface::x11, network::client, role::program, science::visualisation, scope::utility, uitoolkit::motif, use::analysing, use::calculating, use::editing, use::searching, use::viewing, x11::application Section: science Priority: optional Filename: pool/main/n/ncbi-tools6/ncbi-tools-x11_6.1.20170106+dfsg1-0+deb9u1_amd64.deb Size: 1119970 MD5sum: 1a514e81ab22766d9b6326b0eaecd437 SHA256: 2659cca9c7b5b2798945b321e78a2b9c9a280b929d449e9936332547b1bb8339 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt ncbi-tools-x11=6.1.20170106+dfsg1-0+deb9u1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt ncbi-tools-x11=6.1.20170106+dfsg1-0+deb9u1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp8p0dym4c 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp8p0dym4c 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp8p0dym4c/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', 'update'] 0m3.7s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', 'update'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s INFO: Running scripts post_setup 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_forbid_home'] 0m5.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_forbid_home'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat 0m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m6.0s INFO: Running scripts is_testable 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s INFO: Running scripts pre_test 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_test_root_password'] 0m6.0s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_test_root_password'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'show', '--no-all-versions', 'ncbi-tools-x11'] 0m6.1s DUMP: Package: ncbi-tools-x11 Source: ncbi-tools6 Version: 6.1.20120620-8 Installed-Size: 2797 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libvibrant6b (<< 6.1.20120620.1), libvibrant6b (>= 6.1.20120620), libc6 (>= 2.4) Suggests: blast2, ncbi-tools-bin Description-en: NCBI libraries for biology applications (X-based utilities) This package includes some X-based utilities distributed with the NCBI C SDK: Cn3D, Network Entrez, Sequin, ddv, and udv. These programs are not part of ncbi-tools-bin because they depend on several additional library packages. Description-md5: d0eef02c68ea048bf0b8710f46afdc1e Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Tag: biology::peptidic, field::biology, field::biology:bioinformatics, field::biology:structural, implemented-in::c, interface::3d, interface::x11, network::client, role::program, science::visualisation, scope::utility, uitoolkit::motif, use::analysing, use::calculating, use::editing, use::searching, use::viewing, x11::application Section: science Priority: optional Filename: pool/main/n/ncbi-tools6/ncbi-tools-x11_6.1.20120620-8_amd64.deb Size: 1131148 MD5sum: 800b78a044deaf3f2529fdfda8020b07 SHA1: 655e4f3c257001f8eab0f8f6823a5f24c10d25c4 SHA256: 1efe89c91df5c6f2bbe2602dc8d423910373bf86f61812020e7c7dcce6369f2d 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'show', '--no-all-versions', 'ncbi-tools-x11'] 0m6.1s INFO: apt-cache knows about the following packages: ncbi-tools-x11 0m6.1s INFO: Running scripts pre_install 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_database-server'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_database-server'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy'] 0m6.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy', 'ncbi-tools-x11'] 0m6.2s DUMP: ncbi-tools-x11: Installed: (none) Candidate: 6.1.20120620-8 Version table: 6.1.20120620-8 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy', 'ncbi-tools-x11'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-y', 'install', 'ncbi-tools-x11'] 0m13.4s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: fontconfig-config fonts-dejavu-core libbsd0 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglu1-mesa libice6 libjpeg62-turbo libllvm3.5 libmotif-common libncbi6 libpciaccess0 libpng12-0 libsm6 libtxc-dxtn-s2tc0 libvibrant6b libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxm4 libxmu6 libxrender1 libxshmfence1 libxt6 libxxf86vm1 ncbi-data ucf x11-common Suggested packages: pciutils blast2 ncbi-tools-bin The following NEW packages will be installed: fontconfig-config fonts-dejavu-core libbsd0 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglu1-mesa libice6 libjpeg62-turbo libllvm3.5 libmotif-common libncbi6 libpciaccess0 libpng12-0 libsm6 libtxc-dxtn-s2tc0 libvibrant6b libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxm4 libxmu6 libxrender1 libxshmfence1 libxt6 libxxf86vm1 ncbi-data ncbi-tools-x11 ucf x11-common 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. Need to get 27.1 MB of archives. After this operation, 106 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:2 http://deb.debian.org/debian/ jessie/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:3 http://deb.debian.org/debian/ jessie/main libdrm2 amd64 2.4.58-2 [29.9 kB] Get:4 http://deb.debian.org/debian/ jessie/main libpciaccess0 amd64 0.13.2-3+b1 [47.6 kB] Get:5 http://deb.debian.org/debian/ jessie/main libdrm-intel1 amd64 2.4.58-2 [64.9 kB] Get:6 http://deb.debian.org/debian/ jessie/main libdrm-nouveau2 amd64 2.4.58-2 [21.6 kB] Get:7 http://deb.debian.org/debian/ jessie/main libdrm-radeon1 amd64 2.4.58-2 [31.1 kB] Get:8 http://deb.debian.org/debian/ jessie/main libelf1 amd64 0.159-4.2 [160 kB] Get:9 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:10 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:11 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:12 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:13 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:14 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:15 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:16 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:17 http://deb.debian.org/debian/ jessie/main libllvm3.5 amd64 1:3.5-10 [7607 kB] Get:18 http://deb.debian.org/debian/ jessie/main libgl1-mesa-dri amd64 10.3.2-1+deb8u1 [3384 kB] Get:19 http://deb.debian.org/debian/ jessie/main libglapi-mesa amd64 10.3.2-1+deb8u1 [53.3 kB] Get:20 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:21 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:22 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:23 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:24 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:25 http://deb.debian.org/debian/ jessie/main libx11-xcb1 amd64 2:1.6.2-3+deb8u1 [163 kB] Get:26 http://deb.debian.org/debian/ jessie/main libxcb-dri2-0 amd64 1.10-3+b1 [12.9 kB] Get:27 http://deb.debian.org/debian/ jessie/main libxcb-dri3-0 amd64 1.10-3+b1 [11.1 kB] Get:28 http://deb.debian.org/debian/ jessie/main libxcb-glx0 amd64 1.10-3+b1 [27.4 kB] Get:29 http://deb.debian.org/debian/ jessie/main libxcb-present0 amd64 1.10-3+b1 [11.1 kB] Get:30 http://deb.debian.org/debian/ jessie/main libxcb-sync1 amd64 1.10-3+b1 [14.4 kB] Get:31 http://deb.debian.org/debian/ jessie/main libxfixes3 amd64 1:5.0.1-2+deb8u1 [21.1 kB] Get:32 http://deb.debian.org/debian/ jessie/main libxdamage1 amd64 1:1.1.4-2+b1 [14.7 kB] Get:33 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:34 http://deb.debian.org/debian/ jessie/main libxshmfence1 amd64 1.1-4 [6736 B] Get:35 http://deb.debian.org/debian/ jessie/main libxxf86vm1 amd64 1:1.1.3-1+b1 [19.6 kB] Get:36 http://deb.debian.org/debian/ jessie/main libgl1-mesa-glx amd64 10.3.2-1+deb8u1 [180 kB] Get:37 http://deb.debian.org/debian/ jessie/main libglu1-mesa amd64 9.0.0-2 [163 kB] Get:38 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:39 http://deb.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:40 http://deb.debian.org/debian/ jessie/main libmotif-common all 2.3.4-6+deb8u1 [28.1 kB] Get:41 http://deb.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:42 http://deb.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:43 http://deb.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:44 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:45 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:46 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:47 http://deb.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:48 http://deb.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:49 http://deb.debian.org/debian/ jessie/main libxm4 amd64 2.3.4-6+deb8u1 [1028 kB] Get:50 http://deb.debian.org/debian/ jessie/main libvibrant6b amd64 6.1.20120620-8 [1273 kB] Get:51 http://deb.debian.org/debian/ jessie/main libtxc-dxtn-s2tc0 amd64 0~git20131104-1.1 [51.6 kB] Get:52 http://deb.debian.org/debian/ jessie/main ncbi-tools-x11 amd64 6.1.20120620-8 [1131 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.1 MB in 0s (37.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20140620-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20140620-2) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../libdrm2_2.4.58-2_amd64.deb ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8114 files and directories currently installed.) Preparing to unpack .../libmotif-common_2.3.4-6+deb8u1_all.deb ... Unpacking libmotif-common (2.3.4-6+deb8u1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../ncbi-data_6.1.20120620-8_all.deb ... Unpacking ncbi-data (6.1.20120620-8) ... Selecting previously unselected package libncbi6:amd64. Preparing to unpack .../libncbi6_6.1.20120620-8_amd64.deb ... Unpacking libncbi6:amd64 (6.1.20120620-8) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.3.1-12) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../libxrender1_1%3a0.9.8-1+b1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.8-1+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../libxft2_2.3.2-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.4-1+b1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.4-1+b1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../libxmu6_2%3a1.1.2-1_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-1) ... Selecting previously unselected package libxm4:amd64. Preparing to unpack .../libxm4_2.3.4-6+deb8u1_amd64.deb ... Unpacking libxm4:amd64 (2.3.4-6+deb8u1) ... Selecting previously unselected package libvibrant6b:amd64. Preparing to unpack .../libvibrant6b_6.1.20120620-8_amd64.deb ... Unpacking libvibrant6b:amd64 (6.1.20120620-8) ... Selecting previously unselected package libtxc-dxtn-s2tc0:amd64. Preparing to unpack .../libtxc-dxtn-s2tc0_0~git20131104-1.1_amd64.deb ... Unpacking libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... Selecting previously unselected package ncbi-tools-x11. Preparing to unpack .../ncbi-tools-x11_6.1.20120620-8_amd64.deb ... Unpacking ncbi-tools-x11 (6.1.20120620-8) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libdrm2:amd64 (2.4.58-2) ... Setting up libpciaccess0:amd64 (0.13.2-3+b1) ... Setting up libdrm-intel1:amd64 (2.4.58-2) ... Setting up libdrm-nouveau2:amd64 (2.4.58-2) ... Setting up libdrm-radeon1:amd64 (2.4.58-2) ... Setting up libelf1:amd64 (0.159-4.2) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up libllvm3.5:amd64 (1:3.5-10) ... Setting up libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Setting up libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-dri2-0:amd64 (1.10-3+b1) ... Setting up libxcb-dri3-0:amd64 (1.10-3+b1) ... Setting up libxcb-glx0:amd64 (1.10-3+b1) ... Setting up libxcb-present0:amd64 (1.10-3+b1) ... Setting up libxcb-sync1:amd64 (1.10-3+b1) ... Setting up libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxshmfence1:amd64 (1.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Setting up libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Setting up libglu1-mesa:amd64 (9.0.0-2) ... Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libmotif-common (2.3.4-6+deb8u1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxm4:amd64 (2.3.4-6+deb8u1) ... Setting up libvibrant6b:amd64 (6.1.20120620-8) ... Setting up libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0 to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode Setting up ncbi-tools-x11 (6.1.20120620-8) ... update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-y', 'install', 'ncbi-tools-x11'] 0m13.4s INFO: Running scripts post_install 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_install_exceptions'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_install_exceptions'] 0m13.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m13.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m13.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp8p0dym4c to stretch 0m13.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m13.8s INFO: Running scripts pre_distupgrade 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', 'update'] 0m16.7s DUMP: Ign http://deb.debian.org stretch InRelease Get:1 http://deb.debian.org stretch Release.gpg [3177 B] Get:2 http://deb.debian.org stretch Release [118 kB] Get:3 http://deb.debian.org stretch/main amd64 Packages [7080 kB] Get:4 http://deb.debian.org stretch/main Translation-en [5377 kB] Fetched 12.6 MB in 1s (6902 kB/s) Reading package lists... W: There is no public key available for the following key IDs: 648ACFD622F3D138 NO_PUBKEY 0E98404D386FA1D9 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', 'update'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-y', 'upgrade'] 0m28.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages have been kept back: apt dmsetup gnupg init initscripts libaudit1 libc-bin libc6 libcryptsetup4 libdevmapper1.02.1 libfreetype6 libgcc1 libgl1-mesa-dri liblocale-gettext-perl libmotif-common libncbi6 libstdc++6 libsystemd0 libtext-charwidth-perl libtext-iconv-perl libudev1 libvibrant6b libxm4 ncbi-data ncbi-tools-x11 perl-base procps systemd sysv-rc sysvinit-utils udev util-linux The following packages will be upgraded: acl adduser base-files base-passwd bash bsdutils coreutils dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs findutils fontconfig-config fonts-dejavu-core gpgv grep gzip hostname insserv libacl1 libattr1 libaudit-common libblkid1 libbsd0 libbz2-1.0 libcap2 libcap2-bin libcomerr2 libdb5.3 libdebconfclient0 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libffi6 libfontconfig1 libgcrypt20 libgl1-mesa-glx libglapi-mesa libglu1-mesa libgpg-error0 libice6 libjpeg62-turbo libkmod2 liblzma5 libmount1 libncurses5 libncursesw5 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpciaccess0 libpcre3 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsm6 libsmartcols1 libss2 libtext-wrapi18n-perl libtinfo5 libusb-0.1-4 libustr-1.0-1 libuuid1 libx11-6 libx11-data libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxmu6 libxrender1 libxshmfence1 libxt6 libxxf86vm1 login lsb-base mawk mount multiarch-support ncurses-base ncurses-bin passwd readline-common sed sensible-utils startpar systemd-sysv tar tzdata ucf x11-common zlib1g 112 upgraded, 0 newly installed, 0 to remove and 32 not upgraded. Need to get 26.0 MB of archives. After this operation, 7663 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ stretch/main base-files amd64 9.9+deb9u13 [67.6 kB] Get:2 http://deb.debian.org/debian/ stretch/main libtinfo5 amd64 6.0+20161126-1+deb9u2 [300 kB] Get:3 http://deb.debian.org/debian/ stretch/main libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:4 http://deb.debian.org/debian/ stretch/main libncursesw5 amd64 6.0+20161126-1+deb9u2 [115 kB] Get:5 http://deb.debian.org/debian/ stretch/main sensible-utils all 0.0.9+deb9u1 [10.8 kB] Get:6 http://deb.debian.org/debian/ stretch/main debianutils amd64 4.8.1.1 [100 kB] Get:7 http://deb.debian.org/debian/ stretch/main bash amd64 4.4-5 [1427 kB] Get:8 http://deb.debian.org/debian/ stretch/main bsdutils amd64 1:2.29.2-1+deb9u1 [112 kB] Get:9 http://deb.debian.org/debian/ stretch/main coreutils amd64 8.26-3 [2870 kB] Get:10 http://deb.debian.org/debian/ stretch/main tar amd64 1.29b-1.1 [759 kB] Get:11 http://deb.debian.org/debian/ stretch/main liblzma5 amd64 5.2.2-1.2+b1 [234 kB] Get:12 http://deb.debian.org/debian/ stretch/main dpkg amd64 1.18.25 [2115 kB] Get:13 http://deb.debian.org/debian/ stretch/main dash amd64 0.5.8-2.4 [109 kB] Get:14 http://deb.debian.org/debian/ stretch/main diffutils amd64 1:3.5-3 [314 kB] Get:15 http://deb.debian.org/debian/ stretch/main e2fslibs amd64 1.43.4-2+deb9u1 [208 kB] Get:16 http://deb.debian.org/debian/ stretch/main e2fsprogs amd64 1.43.4-2+deb9u1 [947 kB] Get:17 http://deb.debian.org/debian/ stretch/main findutils amd64 4.6.0+git+20161106-2 [622 kB] Get:18 http://deb.debian.org/debian/ stretch/main grep amd64 2.27-2 [382 kB] Get:19 http://deb.debian.org/debian/ stretch/main gzip amd64 1.6-5+b1 [114 kB] Get:20 http://deb.debian.org/debian/ stretch/main hostname amd64 3.18+b1 [14.9 kB] Get:21 http://deb.debian.org/debian/ stretch/main login amd64 1:4.4-4.1 [790 kB] Get:22 http://deb.debian.org/debian/ stretch/main libpcre3 amd64 2:8.39-3 [337 kB] Get:23 http://deb.debian.org/debian/ stretch/main libselinux1 amd64 2.6-3+b3 [101 kB] Get:24 http://deb.debian.org/debian/ stretch/main libsmartcols1 amd64 2.29.2-1+deb9u1 [126 kB] Get:25 http://deb.debian.org/debian/ stretch/main mount amd64 2.29.2-1+deb9u1 [189 kB] Get:26 http://deb.debian.org/debian/ stretch/main ncurses-bin amd64 6.0+20161126-1+deb9u2 [366 kB] Get:27 http://deb.debian.org/debian/ stretch/main sed amd64 4.4-1 [280 kB] Get:28 http://deb.debian.org/debian/ stretch/main libdebconfclient0 amd64 0.227 [47.8 kB] Get:29 http://deb.debian.org/debian/ stretch/main base-passwd amd64 3.5.43 [57.7 kB] Get:30 http://deb.debian.org/debian/ stretch/main ncurses-base all 6.0+20161126-1+deb9u2 [238 kB] Get:31 http://deb.debian.org/debian/ stretch/main systemd-sysv amd64 232-25+deb9u12 [82.5 kB] Get:32 http://deb.debian.org/debian/ stretch/main libtext-wrapi18n-perl all 0.06-7.1 [8644 B] Get:33 http://deb.debian.org/debian/ stretch/main debconf-i18n all 1.5.61 [205 kB] Get:34 http://deb.debian.org/debian/ stretch/main debconf all 1.5.61 [159 kB] Get:35 http://deb.debian.org/debian/ stretch/main libpam0g amd64 1.1.8-3.6 [125 kB] Get:36 http://deb.debian.org/debian/ stretch/main libpam-modules-bin amd64 1.1.8-3.6 [105 kB] Get:37 http://deb.debian.org/debian/ stretch/main libpam-modules amd64 1.1.8-3.6 [308 kB] Get:38 http://deb.debian.org/debian/ stretch/main mawk amd64 1.3.3-17+b3 [84.6 kB] Get:39 http://deb.debian.org/debian/ stretch/main libsepol1 amd64 2.6-2 [241 kB] Get:40 http://deb.debian.org/debian/ stretch/main libsemanage-common all 2.6-2 [26.9 kB] Get:41 http://deb.debian.org/debian/ stretch/main libsemanage1 amd64 2.6-2 [103 kB] Get:42 http://deb.debian.org/debian/ stretch/main libbz2-1.0 amd64 1.0.6-8.1 [43.5 kB] Get:43 http://deb.debian.org/debian/ stretch/main libustr-1.0-1 amd64 1.0.4-6 [76.3 kB] Get:44 http://deb.debian.org/debian/ stretch/main passwd amd64 1:4.4-4.1 [996 kB] Get:45 http://deb.debian.org/debian/ stretch/main adduser all 3.115 [241 kB] Get:46 http://deb.debian.org/debian/ stretch/main libgpg-error0 amd64 1.26-2 [112 kB] Get:47 http://deb.debian.org/debian/ stretch/main libgcrypt20 amd64 1.7.6-2+deb9u3 [524 kB] Get:48 http://deb.debian.org/debian/ stretch/main zlib1g amd64 1:1.2.8.dfsg-5 [87.5 kB] Get:49 http://deb.debian.org/debian/ stretch/main gpgv amd64 2.1.18-8~deb9u4 [481 kB] Get:50 http://deb.debian.org/debian/ stretch/main debian-archive-keyring all 2017.5+deb9u1 [73.9 kB] Get:51 http://deb.debian.org/debian/ stretch/main libkmod2 amd64 23-2 [48.1 kB] Get:52 http://deb.debian.org/debian/ stretch/main libslang2 amd64 2.3.1-5 [503 kB] Get:53 http://deb.debian.org/debian/ stretch/main readline-common all 7.0-3 [70.4 kB] Get:54 http://deb.debian.org/debian/ stretch/main libattr1 amd64 1:2.4.47-2+b2 [18.4 kB] Get:55 http://deb.debian.org/debian/ stretch/main libacl1 amd64 2.2.52-3+b1 [28.1 kB] Get:56 http://deb.debian.org/debian/ stretch/main acl amd64 2.2.52-3+b1 [59.5 kB] Get:57 http://deb.debian.org/debian/ stretch/main libuuid1 amd64 2.29.2-1+deb9u1 [70.1 kB] Get:58 http://deb.debian.org/debian/ stretch/main libblkid1 amd64 2.29.2-1+deb9u1 [168 kB] Get:59 http://deb.debian.org/debian/ stretch/main libcomerr2 amd64 1.43.4-2+deb9u1 [63.5 kB] Get:60 http://deb.debian.org/debian/ stretch/main libmount1 amd64 2.29.2-1+deb9u1 [178 kB] Get:61 http://deb.debian.org/debian/ stretch/main libpam-runtime all 1.1.8-3.6 [212 kB] Get:62 http://deb.debian.org/debian/ stretch/main libss2 amd64 1.43.4-2+deb9u1 [67.8 kB] Get:63 http://deb.debian.org/debian/ stretch/main lsb-base all 9.20161125 [27.9 kB] Get:64 http://deb.debian.org/debian/ stretch/main multiarch-support amd64 2.24-11+deb9u4 [201 kB] Get:65 http://deb.debian.org/debian/ stretch/main tzdata all 2020a-0+deb9u1 [278 kB] Get:66 http://deb.debian.org/debian/ stretch/main libcap2 amd64 1:2.25-1 [16.8 kB] Get:67 http://deb.debian.org/debian/ stretch/main libdb5.3 amd64 5.3.28-12+deb9u1 [679 kB] Get:68 http://deb.debian.org/debian/ stretch/main insserv amd64 1.14.0-5.4+b1 [61.8 kB] Get:69 http://deb.debian.org/debian/ stretch/main libaudit-common all 1:2.6.7-2 [18.1 kB] Get:70 http://deb.debian.org/debian/ stretch/main libcap2-bin amd64 1:2.25-1 [26.5 kB] Get:71 http://deb.debian.org/debian/ stretch/main libusb-0.1-4 amd64 2:0.1.12-30 [22.9 kB] Get:72 http://deb.debian.org/debian/ stretch/main startpar amd64 0.59-3.1 [22.5 kB] Get:73 http://deb.debian.org/debian/ stretch/main libbsd0 amd64 0.8.3-1 [83.0 kB] Get:74 http://deb.debian.org/debian/ stretch/main libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:75 http://deb.debian.org/debian/ stretch/main ucf all 3.0036 [70.2 kB] Get:76 http://deb.debian.org/debian/ stretch/main fonts-dejavu-core all 2.37-1 [1068 kB] Get:77 http://deb.debian.org/debian/ stretch/main fontconfig-config all 2.11.0-6.7 [271 kB] Get:78 http://deb.debian.org/debian/ stretch/main libdrm2 amd64 2.4.74-1 [36.2 kB] Get:79 http://deb.debian.org/debian/ stretch/main libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:80 http://deb.debian.org/debian/ stretch/main libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:81 http://deb.debian.org/debian/ stretch/main libdrm-nouveau2 amd64 2.4.74-1 [25.1 kB] Get:82 http://deb.debian.org/debian/ stretch/main libdrm-radeon1 amd64 2.4.74-1 [30.2 kB] Get:83 http://deb.debian.org/debian/ stretch/main libelf1 amd64 0.168-1 [157 kB] Get:84 http://deb.debian.org/debian/ stretch/main libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:85 http://deb.debian.org/debian/ stretch/main libffi6 amd64 3.2.1-6 [20.4 kB] Get:86 http://deb.debian.org/debian/ stretch/main libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:87 http://deb.debian.org/debian/ stretch/main libgl1-mesa-glx amd64 13.0.6-1+b2 [167 kB] Get:88 http://deb.debian.org/debian/ stretch/main libglapi-mesa amd64 13.0.6-1+b2 [58.9 kB] Get:89 http://deb.debian.org/debian/ stretch/main libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:90 http://deb.debian.org/debian/ stretch/main libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:91 http://deb.debian.org/debian/ stretch/main libxcb1 amd64 1.12-1 [133 kB] Get:92 http://deb.debian.org/debian/ stretch/main libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:93 http://deb.debian.org/debian/ stretch/main libx11-xcb1 amd64 2:1.6.4-3+deb9u1 [183 kB] Get:94 http://deb.debian.org/debian/ stretch/main libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:95 http://deb.debian.org/debian/ stretch/main libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:96 http://deb.debian.org/debian/ stretch/main libxcb-glx0 amd64 1.12-1 [113 kB] Get:97 http://deb.debian.org/debian/ stretch/main libxcb-present0 amd64 1.12-1 [95.8 kB] Get:98 http://deb.debian.org/debian/ stretch/main libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:99 http://deb.debian.org/debian/ stretch/main libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:100 http://deb.debian.org/debian/ stretch/main libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:101 http://deb.debian.org/debian/ stretch/main libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:102 http://deb.debian.org/debian/ stretch/main libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:103 http://deb.debian.org/debian/ stretch/main libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:104 http://deb.debian.org/debian/ stretch/main libglu1-mesa amd64 9.0.0-2.1 [168 kB] Get:105 http://deb.debian.org/debian/ stretch/main x11-common all 1:7.7+19 [251 kB] Get:106 http://deb.debian.org/debian/ stretch/main libice6 amd64 2:1.0.9-2 [58.7 kB] Get:107 http://deb.debian.org/debian/ stretch/main libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:108 http://deb.debian.org/debian/ stretch/main libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:109 http://deb.debian.org/debian/ stretch/main libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:110 http://deb.debian.org/debian/ stretch/main libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:111 http://deb.debian.org/debian/ stretch/main libxt6 amd64 1:1.1.5-1 [188 kB] Get:112 http://deb.debian.org/debian/ stretch/main libxmu6 amd64 2:1.1.2-2 [60.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.0 MB in 1s (23.5 MB/s) (Reading database ... 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Removing obsolete conffile /etc/bash_completion.d/debconf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8447 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-3.6_amd64.deb ... Unpacking libpam0g:amd64 (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libpam0g:amd64 (1.1.8-3.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8450 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-3+b1_amd64.deb ... Unpacking libacl1:amd64 (2.2.52-3+b1) over (2.2.52-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libacl1:amd64 (2.2.52-3+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8449 files and directories currently installed.) Preparing to unpack .../libblkid1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libblkid1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libblkid1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8449 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.4-2+deb9u1_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u1) over (1.42.12-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8448 files and directories currently installed.) Preparing to unpack .../libmount1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libmount1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libmount1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8448 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.1.8-3.6_all.deb ... Unpacking libpam-runtime (1.1.8-3.6) over (1.1.8-3.1+deb8u2) ... Setting up libpam-runtime (1.1.8-3.6) ... (Reading database ... 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Preparing to unpack .../libjpeg62-turbo_1%3a1.5.1-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.1-2) over (1:1.3.1-12) ... Preparing to unpack .../libsm6_2%3a1.2.2-1+b3_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b3) over (2:1.2.2-1+b1) ... Preparing to unpack .../libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) over (1:0.9.8-1+b1) ... Preparing to unpack .../libxft2_2.3.2-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1+b2) over (2.3.2-1) ... Preparing to unpack .../libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) over (1:1.1.4-1+b1) ... Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-2) over (2:1.1.2-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libtext-wrapi18n-perl (0.06-7.1) ... Setting up debconf-i18n (1.5.61) ... Setting up mawk (1.3.3-17+b3) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libedit2:amd64 (3.1-20160903-3) ... Setting up ucf (3.0036) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up fontconfig-config (2.11.0-6.7) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libdrm2:amd64 (2.4.74-1) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up libdrm-intel1:amd64 (2.4.74-1) ... Setting up libdrm-nouveau2:amd64 (2.4.74-1) ... Setting up libdrm-radeon1:amd64 (2.4.74-1) ... Setting up libelf1:amd64 (0.168-1) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libglapi-mesa:amd64 (13.0.6-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libx11-xcb1:amd64 (2:1.6.4-3+deb9u1) ... Setting up libxcb-dri2-0:amd64 (1.12-1) ... Setting up libxcb-dri3-0:amd64 (1.12-1) ... Setting up libxcb-glx0:amd64 (1.12-1) ... Setting up libxcb-present0:amd64 (1.12-1) ... Setting up libxcb-sync1:amd64 (1.12-1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b3) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxshmfence1:amd64 (1.2-1+b2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libgl1-mesa-glx:amd64 (13.0.6-1+b2) ... Setting up libglu1-mesa:amd64 (9.0.0-2.1) ... Setting up x11-common (1:7.7+19) ... Installing new version of config file /etc/init.d/x11-common ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of restart. Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-y', 'upgrade'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-yf', 'dist-upgrade'] 0m44.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libllvm3.5 libpng12-0 Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: dirmngr gcc-6-base gnupg-agent gnupg-l10n init-system-helpers libapparmor1 libapt-pkg5.0 libassuan0 libcap-ng0 libdrm-amdgpu1 libfdisk1 libgmp10 libgnutls30 libhogweed4 libidn11 libip4tc0 libksba8 libldap-2.4-2 libldap-common libllvm3.9 liblz4-1 libnettle6 libnpth0 libp11-kit0 libpng16-16 libprocps6 libreadline7 libsasl2-2 libsasl2-modules libsasl2-modules-db libseccomp2 libsensors4 libsqlite3-0 libssl1.1 libtasn1-6 manpages pinentry-curses The following packages will be upgraded: apt dmsetup gnupg init initscripts libaudit1 libc-bin libc6 libcryptsetup4 libdevmapper1.02.1 libfreetype6 libgcc1 libgl1-mesa-dri liblocale-gettext-perl libmotif-common libncbi6 libstdc++6 libsystemd0 libtext-charwidth-perl libtext-iconv-perl libudev1 libvibrant6b libxm4 ncbi-data ncbi-tools-x11 perl-base procps systemd sysv-rc sysvinit-utils udev util-linux 32 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 50.7 MB of archives. After this operation, 178 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ stretch/main libc6 amd64 2.24-11+deb9u4 [2694 kB] Get:2 http://deb.debian.org/debian/ stretch/main libc-bin amd64 2.24-11+deb9u4 [782 kB] Get:3 http://deb.debian.org/debian/ stretch/main gcc-6-base amd64 6.3.0-18+deb9u1 [180 kB] Get:4 http://deb.debian.org/debian/ stretch/main libgcc1 amd64 1:6.3.0-18+deb9u1 [38.0 kB] Get:5 http://deb.debian.org/debian/ stretch/main libfdisk1 amd64 2.29.2-1+deb9u1 [203 kB] Get:6 http://deb.debian.org/debian/ stretch/main init-system-helpers all 1.48 [44.0 kB] Get:7 http://deb.debian.org/debian/ stretch/main util-linux amd64 2.29.2-1+deb9u1 [981 kB] Get:8 http://deb.debian.org/debian/ stretch/main sysvinit-utils amd64 2.88dsf-59.9 [68.4 kB] Get:9 http://deb.debian.org/debian/ stretch/main initscripts amd64 2.88dsf-59.9 [84.5 kB] Get:10 http://deb.debian.org/debian/ stretch/main sysv-rc all 2.88dsf-59.9 [67.4 kB] Get:11 http://deb.debian.org/debian/ stretch/main libtext-charwidth-perl amd64 0.04-7+b5 [9870 B] Get:12 http://deb.debian.org/debian/ stretch/main libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:13 http://deb.debian.org/debian/ stretch/main perl-base amd64 5.24.1-3+deb9u7 [1346 kB] Get:14 http://deb.debian.org/debian/ stretch/main liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:15 http://deb.debian.org/debian/ stretch/main init amd64 1.48 [12.0 kB] Get:16 http://deb.debian.org/debian/ stretch/main liblz4-1 amd64 0.0~r131-2+b1 [33.3 kB] Get:17 http://deb.debian.org/debian/ stretch/main libstdc++6 amd64 6.3.0-18+deb9u1 [396 kB] Get:18 http://deb.debian.org/debian/ stretch/main libapt-pkg5.0 amd64 1.4.10 [917 kB] Get:19 http://deb.debian.org/debian/ stretch/main apt amd64 1.4.10 [1232 kB] Get:20 http://deb.debian.org/debian/ stretch/main libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:21 http://deb.debian.org/debian/ stretch/main libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:22 http://deb.debian.org/debian/ stretch/main libip4tc0 amd64 1.6.0+snapshot20161117-6 [67.8 kB] Get:23 http://deb.debian.org/debian/ stretch/main libseccomp2 amd64 2.3.1-2.1+deb9u1 [40.7 kB] Get:24 http://deb.debian.org/debian/ stretch/main libudev1 amd64 232-25+deb9u12 [126 kB] Get:25 http://deb.debian.org/debian/ stretch/main libsystemd0 amd64 232-25+deb9u12 [282 kB] Get:26 http://deb.debian.org/debian/ stretch/main systemd amd64 232-25+deb9u12 [2469 kB] Get:27 http://deb.debian.org/debian/ stretch/main udev amd64 232-25+deb9u12 [1113 kB] Get:28 http://deb.debian.org/debian/ stretch/main libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:29 http://deb.debian.org/debian/ stretch/main procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:30 http://deb.debian.org/debian/ stretch/main libcap-ng0 amd64 0.7.7-3+b1 [13.8 kB] Get:31 http://deb.debian.org/debian/ stretch/main libaudit1 amd64 1:2.6.7-2 [51.3 kB] Get:32 http://deb.debian.org/debian/ stretch/main libdevmapper1.02.1 amd64 2:1.02.137-2 [170 kB] Get:33 http://deb.debian.org/debian/ stretch/main dmsetup amd64 2:1.02.137-2 [107 kB] Get:34 http://deb.debian.org/debian/ stretch/main libcryptsetup4 amd64 2:1.7.3-4 [109 kB] Get:35 http://deb.debian.org/debian/ stretch/main libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:36 http://deb.debian.org/debian/ stretch/main libxm4 amd64 2.3.4-13 [1017 kB] Get:37 http://deb.debian.org/debian/ stretch/main libmotif-common all 2.3.4-13 [28.4 kB] Get:38 http://deb.debian.org/debian/ stretch/main libassuan0 amd64 2.4.3-2 [42.5 kB] Get:39 http://deb.debian.org/debian/ stretch/main pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:40 http://deb.debian.org/debian/ stretch/main libnpth0 amd64 1.3-1 [14.6 kB] Get:41 http://deb.debian.org/debian/ stretch/main libreadline7 amd64 7.0-3 [151 kB] Get:42 http://deb.debian.org/debian/ stretch/main gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:43 http://deb.debian.org/debian/ stretch/main libksba8 amd64 1.3.5-2 [99.7 kB] Get:44 http://deb.debian.org/debian/ stretch/main libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:45 http://deb.debian.org/debian/ stretch/main gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:46 http://deb.debian.org/debian/ stretch/main libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:47 http://deb.debian.org/debian/ stretch/main libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:48 http://deb.debian.org/debian/ stretch/main libnettle6 amd64 3.3-1+b2 [192 kB] Get:49 http://deb.debian.org/debian/ stretch/main libhogweed4 amd64 3.3-1+b2 [136 kB] Get:50 http://deb.debian.org/debian/ stretch/main libp11-kit0 amd64 0.23.3-2 [111 kB] Get:51 http://deb.debian.org/debian/ stretch/main libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:52 http://deb.debian.org/debian/ stretch/main libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:53 http://deb.debian.org/debian/ stretch/main libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:54 http://deb.debian.org/debian/ stretch/main libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:55 http://deb.debian.org/debian/ stretch/main libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:56 http://deb.debian.org/debian/ stretch/main libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:57 http://deb.debian.org/debian/ stretch/main manpages all 4.10-2 [1222 kB] Get:58 http://deb.debian.org/debian/ stretch/main dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:59 http://deb.debian.org/debian/ stretch/main libdrm-amdgpu1 amd64 2.4.74-1 [26.4 kB] Get:60 http://deb.debian.org/debian/ stretch/main libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:61 http://deb.debian.org/debian/ stretch/main libllvm3.9 amd64 1:3.9.1-9 [11.3 MB] Get:62 http://deb.debian.org/debian/ stretch/main libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:63 http://deb.debian.org/debian/ stretch/main libgl1-mesa-dri amd64 13.0.6-1+b2 [4536 kB] Get:64 http://deb.debian.org/debian/ stretch/main ncbi-tools-x11 amd64 6.1.20170106+dfsg1-0+deb9u1 [1120 kB] Get:65 http://deb.debian.org/debian/ stretch/main libvibrant6b amd64 6.1.20170106+dfsg1-0+deb9u1 [1275 kB] Get:66 http://deb.debian.org/debian/ stretch/main libncbi6 amd64 6.1.20170106+dfsg1-0+deb9u1 [4024 kB] Get:67 http://deb.debian.org/debian/ stretch/main ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:68 http://deb.debian.org/debian/ stretch/main libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:69 http://deb.debian.org/debian/ stretch/main gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 50.7 MB in 1s (32.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8466 files and directories currently installed.) Preparing to unpack .../libc6_2.24-11+deb9u4_amd64.deb ... Unpacking libc6:amd64 (2.24-11+deb9u4) over (2.19-18+deb8u10) ... Setting up libc6:amd64 (2.24-11+deb9u4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8465 files and directories currently installed.) Preparing to unpack .../gcc-6-base_6.3.0-18+deb9u1_amd64.deb ... Unpacking gcc-6-base:amd64 (6.3.0-18+deb9u1) ... Setting up gcc-6-base:amd64 (6.3.0-18+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8472 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6.3.0-18+deb9u1_amd64.deb ... Unpacking libgcc1:amd64 (1:6.3.0-18+deb9u1) over (1:4.9.2-10+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libgcc1:amd64 (1:6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libfdisk1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8472 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8478 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.9_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59.9) over (2.88dsf-59) ... Replacing files in old package initscripts (2.88dsf-59) ... Selecting previously unselected package init-system-helpers. Preparing to unpack .../init-system-helpers_1.48_all.deb ... Unpacking init-system-helpers (1.48) ... Replacing files in old package sysv-rc (2.88dsf-59) ... Setting up init-system-helpers (1.48) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8482 files and directories currently installed.) Preparing to unpack .../util-linux_2.29.2-1+deb9u1_amd64.deb ... Unpacking util-linux (2.29.2-1+deb9u1) over (2.25.2-6) ... Replacing files in old package initscripts (2.88dsf-59) ... Setting up util-linux (2.29.2-1+deb9u1) ... Installing new version of config file /etc/init.d/hwclock.sh ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8513 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.9_amd64.deb ... Unpacking initscripts (2.88dsf-59.9) over (2.88dsf-59) ... Setting up sysvinit-utils (2.88dsf-59.9) ... Setting up initscripts (2.88dsf-59.9) ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/umountfs ... Installing new version of config file /etc/init.d/umountroot ... Installing new version of config file /etc/default/rcS ... Installing new version of config file /etc/default/tmpfs ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8513 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.9_all.deb ... Unpacking sysv-rc (2.88dsf-59.9) over (2.88dsf-59) ... Setting up sysv-rc (2.88dsf-59.9) ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8511 files and directories currently installed.) Preparing to unpack .../libtext-charwidth-perl_0.04-7+b5_amd64.deb ... Unpacking libtext-charwidth-perl (0.04-7+b5) over (0.04-7+b3) ... Preparing to unpack .../libtext-iconv-perl_1.7-5+b4_amd64.deb ... Unpacking libtext-iconv-perl (1.7-5+b4) over (1.7-5+b2) ... Preparing to unpack .../perl-base_5.24.1-3+deb9u7_amd64.deb ... Unpacking perl-base (5.24.1-3+deb9u7) over (5.20.2-3+deb8u11) ... Setting up perl-base (5.24.1-3+deb9u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8570 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-3+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b1) over (1.05-8+b1) ... Preparing to unpack .../archives/init_1.48_amd64.deb ... Unpacking init (1.48) over (1.22) ... Setting up init (1.48) ... Selecting previously unselected package liblz4-1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8568 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2+b1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8574 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.3.0-18+deb9u1_amd64.deb ... Unpacking libstdc++6:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libstdc++6:amd64 (6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8575 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.10_amd64.deb ... Unpacking apt (1.4.10) over (1.0.9.8.4) ... Selecting previously unselected package libapt-pkg5.0:amd64. Preparing to unpack .../libapt-pkg5.0_1.4.10_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libapt-pkg5.0:amd64 (1.4.10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8630 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.11.0-3+deb9u2_amd64.deb ... Unpacking libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libidn11:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8636 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-1+deb9u1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libip4tc0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8642 files and directories currently installed.) Preparing to unpack .../libip4tc0_1.6.0+snapshot20161117-6_amd64.deb ... Unpacking libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8648 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2.1+deb9u1_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8654 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u12_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u12) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libudev1:amd64 (232-25+deb9u12) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8653 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u12_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u12) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libsystemd0:amd64 (232-25+deb9u12) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: considering deconfiguration of systemd, which would be broken by installation of udev ... dpkg: yes, will deconfigure systemd (broken by udev) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8653 files and directories currently installed.) Preparing to unpack .../udev_232-25+deb9u12_amd64.deb ... De-configuring systemd (215-17+deb8u7) ... Unpacking udev (232-25+deb9u12) over (215-17+deb8u7) ... Replacing files in old package systemd (215-17+deb8u7) ... dpkg: warning: unable to delete old directory '/etc/modprobe.d': Directory not empty Preparing to unpack .../systemd_232-25+deb9u12_amd64.deb ... Unpacking systemd (232-25+deb9u12) over (215-17+deb8u7) ... Setting up systemd (232-25+deb9u12) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/timesyncd.conf ... Installing new version of config file /etc/systemd/user.conf ... Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service. addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.machine1.conf ... Removing obsolete conffile /etc/systemd/bootchart.conf ... Selecting previously unselected package libprocps6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8714 files and directories currently installed.) Preparing to unpack .../libprocps6_2%3a3.3.12-3+deb9u1_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8721 files and directories currently installed.) Preparing to unpack .../procps_2%3a3.3.12-3+deb9u1_amd64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-3+deb9u1) over (2:3.3.9-9+deb8u1) ... Setting up procps (2:3.3.12-3+deb9u1) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Processing triggers for systemd (232-25+deb9u12) ... Selecting previously unselected package libcap-ng0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8723 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.7-3+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.7-3+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcap-ng0:amd64 (0.7.7-3+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8730 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.6.7-2_amd64.deb ... Unpacking libaudit1:amd64 (1:2.6.7-2) over (1:2.4-1+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libaudit1:amd64 (1:2.6.7-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8729 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.137-2_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Preparing to unpack .../dmsetup_2%3a1.02.137-2_amd64.deb ... Unpacking dmsetup (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.137-2) ... Setting up dmsetup (2:1.02.137-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8733 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.3-4_amd64.deb ... Unpacking libcryptsetup4:amd64 (2:1.7.3-4) over (2:1.6.6-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcryptsetup4:amd64 (2:1.7.3-4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libpng16-16:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8733 files and directories currently installed.) Preparing to unpack .../libpng16-16_1.6.28-1+deb9u1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.28-1+deb9u1) ... Preparing to unpack .../libxm4_2.3.4-13_amd64.deb ... Unpacking libxm4:amd64 (2.3.4-13) over (2.3.4-6+deb8u1) ... Preparing to unpack .../libmotif-common_2.3.4-13_all.deb ... Unpacking libmotif-common (2.3.4-13) over (2.3.4-6+deb8u1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../libassuan0_2.4.3-2_amd64.deb ... Unpacking libassuan0:amd64 (2.4.3-2) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../pinentry-curses_1.0.0-2_amd64.deb ... Unpacking pinentry-curses (1.0.0-2) ... Selecting previously unselected package libnpth0:amd64. Preparing to unpack .../libnpth0_1.3-1_amd64.deb ... Unpacking libnpth0:amd64 (1.3-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Selecting previously unselected package gnupg-agent. Preparing to unpack .../gnupg-agent_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg-agent (2.1.18-8~deb9u4) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../libksba8_1.3.5-2_amd64.deb ... Unpacking libksba8:amd64 (1.3.5-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.16.2-5+deb9u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Preparing to unpack .../gnupg_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg (2.1.18-8~deb9u4) over (1.4.18-7+deb8u5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libnpth0:amd64 (1.3-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up gnupg-agent (2.1.18-8~deb9u4) ... Setting up libksba8:amd64 (1.3.5-2) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up gnupg (2.1.18-8~deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libssl1.1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8805 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.0l-1~deb9u1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../libnettle6_3.3-1+b2_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+b2) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../libhogweed4_3.3-1+b2_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+b2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.23.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.10-1.1+deb9u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Selecting previously unselected package libgnutls30:amd64. Preparing to unpack .../libgnutls30_3.5.8-5+deb9u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u5) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../libldap-common_2.4.44+dfsg-5+deb9u4_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.44+dfsg-5+deb9u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package manpages. Preparing to unpack .../manpages_4.10-2_all.deb ... Unpacking manpages (4.10-2) ... Selecting previously unselected package dirmngr. Preparing to unpack .../dirmngr_2.1.18-8~deb9u4_amd64.deb ... Unpacking dirmngr (2.1.18-8~deb9u4) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../libdrm-amdgpu1_2.4.74-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.74-1) ... Preparing to unpack .../libfreetype6_2.6.3-3.2+deb9u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u1) over (2.5.2-3+deb8u2) ... Selecting previously unselected package libllvm3.9:amd64. Preparing to unpack .../libllvm3.9_1%3a3.9.1-9_amd64.deb ... Unpacking libllvm3.9:amd64 (1:3.9.1-9) ... Selecting previously unselected package libsensors4:amd64. Preparing to unpack .../libsensors4_1%3a3.4.0-4_amd64.deb ... Unpacking libsensors4:amd64 (1:3.4.0-4) ... Preparing to unpack .../libgl1-mesa-dri_13.0.6-1+b2_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (13.0.6-1+b2) over (10.3.2-1+deb8u1) ... Preparing to unpack .../ncbi-tools-x11_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... Unpacking ncbi-tools-x11 (6.1.20170106+dfsg1-0+deb9u1) over (6.1.20120620-8) ... Preparing to unpack .../libvibrant6b_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... Unpacking libvibrant6b:amd64 (6.1.20170106+dfsg1-0+deb9u1) over (6.1.20120620-8) ... Preparing to unpack .../libncbi6_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... Unpacking libncbi6:amd64 (6.1.20170106+dfsg1-0+deb9u1) over (6.1.20120620-8) ... Preparing to unpack .../ncbi-data_6.1.20170106+dfsg1-0+deb9u1_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-0+deb9u1) over (6.1.20120620-8) ... Selecting previously unselected package libsasl2-modules:amd64. Preparing to unpack .../libsasl2-modules_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../gnupg-l10n_2.1.18-8~deb9u4_all.deb ... Unpacking gnupg-l10n (2.1.18-8~deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libtext-charwidth-perl (0.04-7+b5) ... Setting up libtext-iconv-perl (1.7-5+b4) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up apt (1.4.10) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Created symlink /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer → /lib/systemd/system/apt-daily-upgrade.timer. Created symlink /etc/systemd/system/timers.target.wants/apt-daily.timer → /lib/systemd/system/apt-daily.timer. Removing obsolete conffile /etc/cron.daily/apt ... Setting up udev (232-25+deb9u12) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udevmonitor.conf ... Installing new version of config file /etc/udev/udev.conf ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. Removing obsolete conffile /etc/init.d/udev-finish ... Removing obsolete conffile /etc/init/udev-finish.conf ... Removing obsolete conffile /etc/init/udev-fallback-graphics.conf ... Removing obsolete conffile /etc/modprobe.d/fbdev-blacklist.conf ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up libmotif-common (2.3.4-13) ... Setting up libxm4:amd64 (2.3.4-13) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up manpages (4.10-2) ... Setting up dirmngr (2.1.18-8~deb9u4) ... Setting up libdrm-amdgpu1:amd64 (2.4.74-1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libllvm3.9:amd64 (1:3.9.1-9) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... Installing new version of config file /etc/drirc ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libncbi6:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libvibrant6b:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Setting up ncbi-tools-x11 (6.1.20170106+dfsg1-0+deb9u1) ... update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up gnupg-l10n (2.1.18-8~deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for systemd (232-25+deb9u12) ... 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-yf', 'dist-upgrade'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m45.3s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m45.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m45.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'show', '--no-all-versions', 'ncbi-tools-x11'] 0m45.4s DUMP: Package: ncbi-tools-x11 Source: ncbi-tools6 Version: 6.1.20170106+dfsg1-0+deb9u1 Installed-Size: 2745 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libvibrant6b (<< 6.1.20170106+dfsg1.1), libvibrant6b (>= 6.1.20170106+dfsg1), libc6 (>= 2.4) Suggests: ncbi-tools-bin Description-en: NCBI libraries for biology applications (X-based utilities) This package includes some X-based utilities distributed with the NCBI C SDK: Cn3D, Network Entrez, Sequin, ddv, and udv. These programs are not part of ncbi-tools-bin because they depend on several additional library packages. Description-md5: d0eef02c68ea048bf0b8710f46afdc1e Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Tag: biology::peptidic, field::biology, field::biology:bioinformatics, field::biology:structural, implemented-in::c, interface::3d, interface::graphical, interface::x11, network::client, role::program, science::visualisation, scope::utility, uitoolkit::motif, use::analysing, use::calculating, use::editing, use::searching, use::viewing, x11::application Section: science Priority: optional Filename: pool/main/n/ncbi-tools6/ncbi-tools-x11_6.1.20170106+dfsg1-0+deb9u1_amd64.deb Size: 1119970 MD5sum: 1a514e81ab22766d9b6326b0eaecd437 SHA256: 2659cca9c7b5b2798945b321e78a2b9c9a280b929d449e9936332547b1bb8339 0m45.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'show', '--no-all-versions', 'ncbi-tools-x11'] 0m45.4s INFO: apt-cache knows about the following packages: ncbi-tools-x11 0m45.4s INFO: Running scripts pre_install 0m45.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_database-server'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_database-server'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_exceptions'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_exceptions'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_extras'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_extras'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy'] 0m45.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m45.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy'] 0m45.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy', 'ncbi-tools-x11'] 0m45.6s DUMP: ncbi-tools-x11: Installed: 6.1.20170106+dfsg1-0+deb9u1 Candidate: 6.1.20170106+dfsg1-0+deb9u1 Version table: *** 6.1.20170106+dfsg1-0+deb9u1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m45.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy', 'ncbi-tools-x11'] 0m45.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-y', 'install', 'ncbi-tools-x11'] 0m46.0s DUMP: Reading package lists... Building dependency tree... Reading state information... ncbi-tools-x11 is already the newest version (6.1.20170106+dfsg1-0+deb9u1). The following packages were automatically installed and are no longer required: libllvm3.5 libpng12-0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-y', 'install', 'ncbi-tools-x11'] 0m46.0s INFO: Running scripts post_install 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_install_exceptions'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_install_exceptions'] 0m46.0s INFO: Running scripts post_distupgrade 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_exceptions'] 0m46.1s DUMP: mode of '/usr/share/man/sl' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man1' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man8' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_exceptions'] 0m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_zz_backports'] 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_distupgrade_zz_backports'] 0m46.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m46.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m46.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m47.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m47.1s INFO: Running scripts pre_install 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_database-server'] 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_database-server'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_exceptions'] 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_exceptions'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_extras'] 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_extras'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy'] 0m47.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy'] 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy', 'ncbi-tools-x11'] 0m47.2s DUMP: ncbi-tools-x11: Installed: 6.1.20170106+dfsg1-0+deb9u1 Candidate: 6.1.20170106+dfsg1-0+deb9u1 Version table: *** 6.1.20170106+dfsg1-0+deb9u1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-cache', 'policy', 'ncbi-tools-x11'] 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-y', 'install', 'ncbi-tools-x11=6.1.20170106+dfsg1-0+deb9u1'] 0m47.5s DUMP: Reading package lists... Building dependency tree... Reading state information... ncbi-tools-x11 is already the newest version (6.1.20170106+dfsg1-0+deb9u1). The following packages were automatically installed and are no longer required: libllvm3.5 libpng12-0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', '-y', 'install', 'ncbi-tools-x11=6.1.20170106+dfsg1-0+deb9u1'] 0m47.5s INFO: Running scripts post_install 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_install_exceptions'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_install_exceptions'] 0m47.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m48.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m48.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', '-ac', '--ignore-obsolete'] 0m50.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', '-ac', '--ignore-obsolete'] 0m50.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m50.1s DUMP: 0.15.6 0m50.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m50.1s INFO: Running adequate version 0.15.6 now. 0m50.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'ncbi-tools-x11'] 0m50.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'ncbi-tools-x11'] 0m50.3s INFO: Running scripts pre_remove 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_exceptions'] 0m52.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/pre_remove_exceptions'] 0m52.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m52.4s DUMP: install ok installed acl acl 2.2.52-3+b1 install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debconf-i18n debconf-i18n 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dirmngr dirmngr 2.1.18-8~deb9u4 install ok installed dmsetup dmsetup 2:1.02.137-2 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gnupg gnupg 2.1.18-8~deb9u4 install ok installed gnupg-agent gnupg-agent 2.1.18-8~deb9u4 install ok installed gnupg-l10n gnupg-l10n 2.1.18-8~deb9u4 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init init 1.48 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed initscripts initscripts 2.88dsf-59.9 install ok installed insserv insserv 1.14.0-5.4+b1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapparmor1:amd64 libapparmor1 2.11.0-3+deb9u2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libassuan0:amd64 libassuan0 2.4.3-2 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcap2:amd64 libcap2 1:2.25-1 install ok installed libcap2-bin libcap2-bin 1:2.25-1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.7.3-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.137-2 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.74-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.74-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.74-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.74-1 install ok installed libdrm2:amd64 libdrm2 2.4.74-1 install ok installed libedit2:amd64 libedit2 3.1-20160903-3 install ok installed libelf1:amd64 libelf1 0.168-1 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u3 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 13.0.6-1+b2 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 13.0.6-1+b2 install ok installed libglapi-mesa:amd64 libglapi-mesa 13.0.6-1+b2 install ok installed libglu1-mesa:amd64 libglu1-mesa 9.0.0-2.1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+b2 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libip4tc0:amd64 libip4tc0 1.6.0+snapshot20161117-6 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2 install ok installed libkmod2:amd64 libkmod2 23-2 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u4 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u4 install ok installed libllvm3.5:amd64 libllvm3.5 1:3.5-10 install ok installed libllvm3.9:amd64 libllvm3.9 1:3.9.1-9 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b1 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmotif-common libmotif-common 2.3.4-13 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncbi6:amd64 libncbi6 6.1.20170106+dfsg1-0+deb9u1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnettle6:amd64 libnettle6 3.3-1+b2 install ok installed libnpth0:amd64 libnpth0 1.3-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.4-1+b2 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libseccomp2:amd64 libseccomp2 2.3.1-2.1+deb9u1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsensors4:amd64 libsensors4 1:3.4.0-4 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libslang2:amd64 libslang2 2.3.1-5 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b5 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7.1 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libtxc-dxtn-s2tc0:amd64 libtxc-dxtn-s2tc0 0~git20131104-1.1 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-30 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libvibrant6b:amd64 libvibrant6b 6.1.20170106+dfsg1-0+deb9u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u1 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.4-3+deb9u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.12-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.12-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.12-1 install ok installed libxcb-present0:amd64 libxcb-present0 1.12-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.12-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1+b2 install ok installed libxm4:amd64 libxm4 2.3.4-13 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.2-1+b2 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed login login 1:4.4-4.1 install ok installed lsb-base lsb-base 9.20161125 install ok installed manpages manpages 4.10-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb9u1 install ok installed ncbi-tools-x11 ncbi-tools-x11 6.1.20170106+dfsg1-0+deb9u1 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed pinentry-curses pinentry-curses 1.0.0-2 install ok installed procps procps 2:3.3.12-3+deb9u1 install ok installed readline-common readline-common 7.0-3 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed startpar startpar 0.59-3.1 install ok installed systemd systemd 232-25+deb9u12 install ok installed systemd-sysv systemd-sysv 232-25+deb9u12 install ok installed sysv-rc sysv-rc 2.88dsf-59.9 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed tzdata tzdata 2020a-0+deb9u1 install ok installed ucf ucf 3.0036 install ok installed udev udev 232-25+deb9u12 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed x11-common x11-common 1:7.7+19 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m52.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m52.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', 'remove', 'fontconfig-config', 'fonts-dejavu-core', 'gnupg', 'gnupg-agent', 'libbsd0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglu1-mesa:amd64', 'libice6:amd64', 'libjpeg62-turbo:amd64', 'libllvm3.5:amd64', 'libllvm3.9:amd64', 'libmotif-common', 'libncbi6:amd64', 'libpciaccess0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libprocps3:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libvibrant6b:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxm4:amd64', 'libxmu6:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'ncbi-data', 'pinentry-curses', 'ucf', 'x11-common', 'ncbi-tools-x11'] 0m53.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: dirmngr gnupg-l10n libassuan0 libffi6 libgmp10 libgnutls30 libhogweed4 libksba8 libldap-2.4-2 libldap-common libnettle6 libnpth0 libp11-kit0 libreadline7 libsasl2-2 libsasl2-modules libsasl2-modules-db libsqlite3-0 libssl1.1 libtasn1-6 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: fontconfig-config fonts-dejavu-core gnupg gnupg-agent libbsd0 libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglu1-mesa libice6 libjpeg62-turbo libllvm3.5 libllvm3.9 libmotif-common libncbi6 libpciaccess0 libpng12-0 libpng16-16 libprocps3 libsensors4 libsm6 libtxc-dxtn-s2tc0 libvibrant6b libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxm4 libxmu6 libxrender1 libxshmfence1 libxt6 libxxf86vm1 ncbi-data ncbi-tools-x11 pinentry-curses ucf x11-common 0 upgraded, 0 newly installed, 59 to remove and 0 not upgraded. After this operation, 262 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9326 files and directories currently installed.) Removing ncbi-tools-x11 (6.1.20170106+dfsg1-0+deb9u1) ... Removing libvibrant6b:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Removing libxm4:amd64 (2.3.4-13) ... Removing libxft2:amd64 (2.3.2-1+b2) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing fonts-dejavu-core (2.37-1) ... Removing gnupg (2.1.18-8~deb9u4) ... Removing gnupg-agent (2.1.18-8~deb9u4) ... Removing libglu1-mesa:amd64 (9.0.0-2.1) ... Removing libgl1-mesa-glx:amd64 (13.0.6-1+b2) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxcb-sync1:amd64 (1.12-1) ... Removing libxmu6:amd64 (2:1.1.2-2) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... Removing libdrm-amdgpu1:amd64 (2.4.74-1) ... Removing libdrm-intel1:amd64 (2.4.74-1) ... Removing libdrm-nouveau2:amd64 (2.4.74-1) ... Removing libdrm-radeon1:amd64 (2.4.74-1) ... Removing libdrm2:amd64 (2.4.74-1) ... Removing libllvm3.5:amd64 (1:3.5-10) ... Removing libllvm3.9:amd64 (1:3.9.1-9) ... Removing libedit2:amd64 (3.1-20160903-3) ... Removing libelf1:amd64 (0.168-1) ... Removing libexpat1:amd64 (2.2.0-2+deb9u3) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Removing libglapi-mesa:amd64 (13.0.6-1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2) ... Removing libmotif-common (2.3.4-13) ... Removing libncbi6:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Removing libpciaccess0:amd64 (0.13.4-1+b2) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Removing libsensors4:amd64 (1:3.4.0-4) ... Removing libsm6:amd64 (2:1.2.2-1+b3) ... Removing libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... Removing libx11-xcb1:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb-dri2-0:amd64 (1.12-1) ... Removing libxcb-dri3-0:amd64 (1.12-1) ... Removing libxcb-glx0:amd64 (1.12-1) ... Removing libxcb-present0:amd64 (1.12-1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b3) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxshmfence1:amd64 (1.2-1+b2) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Removing pinentry-curses (1.0.0-2) ... Removing ucf (3.0036) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libbsd0:amd64 (0.8.3-1) ... Removing libx11-data (2:1.6.4-3+deb9u1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing x11-common (1:7.7+19) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m53.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', 'remove', 'fontconfig-config', 'fonts-dejavu-core', 'gnupg', 'gnupg-agent', 'libbsd0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglu1-mesa:amd64', 'libice6:amd64', 'libjpeg62-turbo:amd64', 'libllvm3.5:amd64', 'libllvm3.9:amd64', 'libmotif-common', 'libncbi6:amd64', 'libpciaccess0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libprocps3:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libvibrant6b:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxm4:amd64', 'libxmu6:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'ncbi-data', 'pinentry-curses', 'ucf', 'x11-common', 'ncbi-tools-x11'] 0m53.7s INFO: Running scripts post_remove 0m53.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_remove_exceptions'] 0m53.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_remove_exceptions'] 0m53.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'gnupg', 'gnupg-agent', 'libbsd0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglu1-mesa:amd64', 'libice6:amd64', 'libjpeg62-turbo:amd64', 'libllvm3.5:amd64', 'libllvm3.9:amd64', 'libmotif-common', 'libncbi6:amd64', 'libpciaccess0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libprocps3:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libvibrant6b:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxm4:amd64', 'libxmu6:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'ncbi-data', 'pinentry-curses', 'ucf', 'x11-common'] 0m54.0s DUMP: (Reading database ... 8220 files and directories currently installed.) Purging configuration files for fontconfig-config (2.11.0-6.7) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: ignoring request to remove gnupg which isn't installed Purging configuration files for gnupg-agent (2.1.18-8~deb9u4) ... dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... dpkg: warning: ignoring request to remove libgl1-mesa-glx which isn't installed dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglu1-mesa:amd64 (9.0.0-2.1) ... dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libllvm3.5:amd64 (1:3.5-10) ... dpkg: warning: ignoring request to remove libllvm3.9 which isn't installed dpkg: warning: ignoring request to remove libmotif-common which isn't installed dpkg: warning: ignoring request to remove libncbi6 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... dpkg: warning: ignoring request to remove libpng16-16 which isn't installed Purging configuration files for libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Purging configuration files for libsensors4:amd64 (1:3.4.0-4) ... dpkg: warning: ignoring request to remove libsm6 which isn't installed Purging configuration files for libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... dpkg: warning: ignoring request to remove libvibrant6b which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxm4 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for ucf (3.0036) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed Processing triggers for systemd (232-25+deb9u12) ... 0m54.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'gnupg', 'gnupg-agent', 'libbsd0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglu1-mesa:amd64', 'libice6:amd64', 'libjpeg62-turbo:amd64', 'libllvm3.5:amd64', 'libllvm3.9:amd64', 'libmotif-common', 'libncbi6:amd64', 'libpciaccess0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libprocps3:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libvibrant6b:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxm4:amd64', 'libxmu6:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'ncbi-data', 'pinentry-curses', 'ucf', 'x11-common'] 0m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg', '--purge', 'ncbi-tools-x11'] 0m54.1s DUMP: dpkg: warning: ignoring request to remove ncbi-tools-x11 which isn't installed 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg', '--purge', 'ncbi-tools-x11'] 0m54.1s INFO: Running scripts post_purge 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_purge_exceptions'] 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_purge_exceptions'] 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg', '--purge', '--pending'] 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg', '--purge', '--pending'] 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg', '--remove', '--pending'] 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg', '--remove', '--pending'] 0m54.1s INFO: Running scripts post_test 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_test_exceptions'] 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'tmp/scripts/post_test_exceptions'] 0m54.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m54.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg-divert', '--list'] 0m54.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'dpkg-divert', '--list'] 0m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', 'clean'] 0m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c', 'apt-get', 'clean'] 0m54.5s DEBUG: Recording chroot state 0m55.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/shm'] 0m55.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/shm'] 0m55.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/console'] 0m55.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/console'] 0m55.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/ptmx'] 0m55.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/ptmx'] 0m55.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/pts'] 0m55.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/dev/pts'] 0m55.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/proc'] 0m55.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c/proc'] 0m55.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m55.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8p0dym4c'] 0m55.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp8p0dym4c 0m55.5s INFO: PASS: Upgrading between Debian distributions. 0m55.5s INFO: PASS: All tests. 0m55.5s INFO: piuparts run ends. ret=0 End: 2022-11-03 13:29:09 GMT