Start: 2022-10-30 10:09:20 GMT [jessie] Package: science-biology Source: debian-science Version: 1.4 Installed-Size: 62 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.4), science-config (= 1.4) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description: Debian Science Biology packages Homepage: http://wiki.debian.org/DebianScience/ Description-md5: 59633f821572a37f2f07d2231a8d2300 Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.4_all.deb Size: 11496 MD5sum: 934a233a64acd884aa51c4d37c29c5cb SHA1: eeb072018c533a88563320bb5694f8ab62c44672 SHA256: 3872561aaf7cabd3db6b1a2aa54fd109c702b61f53086099f0f00345700e5d3d [stretch] Package: science-biology Source: debian-science Version: 1.7 Installed-Size: 37 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.7), science-config (= 1.7) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description: Debian Science Biology packages Homepage: http://wiki.debian.org/DebianScience/ Description-md5: 59633f821572a37f2f07d2231a8d2300 Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.7_all.deb Size: 16416 MD5sum: 00327a3b7447eb2e28e3e6f0eefae35b SHA256: 7675e9023e8d241f3df72bcb4fa7cabb2b6045594a2cdf341e88c13b54f54b1c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt science-biology=1.7 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat --apt science-biology=1.7 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpz80oq68m 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpz80oq68m 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpz80oq68m/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', 'update'] 0m3.0s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2Xstretch-rcmd/reference-chroot-metadata.dat 0m4.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 0m4.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 0m4.4s INFO: Running scripts is_testable 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_test_root_password'] 0m4.5s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_test_root_password'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'show', '--no-all-versions', 'science-biology'] 0m4.5s DUMP: Package: science-biology Source: debian-science Version: 1.4 Installed-Size: 62 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.4), science-config (= 1.4) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description-en: Debian Science Biology packages This metapackage will install Debian Science packages related to Biology. You might also be interested in the field::biology debtag. . This metapackage makes use of the packages med-bio and med-bio-dev (for development of biological applications) which are maintained by Debian Med - another Debian Pure Blend. If you are a biologist you are most probably interested in the Debian Med project which deals with biology and medicine in much more detail then the more general Debian Science. Description-md5: 59633f821572a37f2f07d2231a8d2300 Homepage: http://wiki.debian.org/DebianScience/ Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.4_all.deb Size: 11496 MD5sum: 934a233a64acd884aa51c4d37c29c5cb SHA1: eeb072018c533a88563320bb5694f8ab62c44672 SHA256: 3872561aaf7cabd3db6b1a2aa54fd109c702b61f53086099f0f00345700e5d3d 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'show', '--no-all-versions', 'science-biology'] 0m4.5s INFO: apt-cache knows about the following packages: science-biology 0m4.5s INFO: Running scripts pre_install 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_database-server'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_database-server'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_extras'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_extras'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy'] 0m4.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy', 'science-biology'] 0m4.6s DUMP: science-biology: Installed: (none) Candidate: 1.4 Version table: 1.4 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy', 'science-biology'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-y', 'install', 'science-biology'] 6m19.0s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: abacas acedb-other acedb-other-belvu acedb-other-dotter adun.app adwaita-icon-theme aevol aglfn alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2 apache2-bin apache2-data apache2-utils apbs aragorn arden aspell aspell-en at-spi2-core autodock autodock-vina autogrid autopoint autotools-dev ballview bamtools bauble bc bedtools binfmt-support binutils biomaj bioperl bioperl-run biosquid blast2 blends-common blt bowtie bowtie2 boxshade bsdmainutils build-essential bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cassiopee cd-hit cdbfasta cdbs chimeraslayer circos circos-tools clearcut clonalframe clustalo clustalw clustalx colord colord-data concavity conservation-code cpp cpp-4.9 critterding curl cython dbus dconf-gsettings-backend dconf-service debhelper default-jre default-jre-headless dh-python dialign dialign-tx dialign-tx-data dictionaries-common discosnp disulfinder disulfinder-data dmidecode dnaclust docutils-common docutils-doc dpkg-dev dssp dvipng edtsurf emacsen-common embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exonerate fakeroot fastaq fastdnaml fastjar fastlink fastqc fasttree fastx-toolkit ffindex figtree file filo fitgcp flexbar fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-droid fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix fonts-texgyre freecontact freeglut3 g++ g++-4.9 gamgi garlic gasic gawk gbrowse gcc gcc-4.9 gdpc genometools genometools-common gentle gettext gettext-base gff2aplot gff2ps gfortran gfortran-4.9 ghostscript giira glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnuplot gnuplot-data gnuplot-qt gnuplot-tex gnustep-back-common gnustep-back0.24 gnustep-back0.24-cairo gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gui-common gnustep-gui-runtime graphviz grinder groff-base gromacs gromacs-data gsettings-desktop-schemas gsfonts gstreamer1.0-plugins-base hhsuite hhsuite-data hicolor-icon-theme hmmer hmmer2 icedtea-netx-common idba ifupdown imagemagick imagemagick-6.q16 imagemagick-common infernal init-system-helpers intltool-debian ipig iproute2 ipython isc-dhcp-client isc-dhcp-common iso-codes jalview jarwrapper java-common java-wrappers javahelp2 javascript-common jellyfish jmol jmol-applet junit junit4 kalign king kissplice krb5-locales ksh laptop-detect last-align libace-perl libai-fann-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libamd2.3.1 libanfo0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libao-common libao4 libapache-dbi-perl libapache-mime4j-java libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libarchive13 libargtable2-0 libarray-compare-perl libart-2.0-2 libasan1 libasound2 libasound2-data libaspell15 libasprintf-dev libasprintf0c2 libasync-interrupt-perl libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatm1 libatomic1 libatspi2.0-0 libaudio2 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libb-hooks-op-check-perl libball1.4 libball1.4-data libballview1.4 libbambamc0 libbamtools2.3.0 libbareword-filehandles-perl libbcmail-java libbcpkix-java libbcprov-java libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libblas-dev libblas3 libboost-chrono1.55.0 libboost-date-time1.55.0 libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-math1.55.0 libboost-mpi1.55.0 libboost-program-options1.55.0 libboost-random1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libboost-timer1.55.0 libbsd-resource-perl libbsd0 libbytecode-java libbz2-dev libc-dev-bin libc6-dev libcaca0 libcache-cache-perl libcairo-gobject2 libcairo2 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcap-ng0 libcarp-always-perl libcarp-clan-perl libcassie1 libcastor-core-java libcastor-xml-java libcbf0 libcdparanoia0 libcdt5 libcfitsio2 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcloog-isl4 libcneartree5 libcofoja-java libcolamd2.8.0 libcolord2 libcolorhug2 libcommon-sense-perl libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-compress-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-math3-java libcommons-net1-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconfig-inifiles-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcqrlib2 libcr0 libcroco3 libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libcvector2 libdata-dumper-simple-perl libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdconf1 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdirectfb-1.2-9 libdjvulibre-text libdjvulibre21 libdns-export100 libdom4j-java libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libelfg0 libelk0 libencode-locale-perl liberror-perl libev-perl libexif12 libexpat1 libexpat1-dev libexporter-tiny-perl libfakeroot libfann2 libfcgi-perl libffi6 libffindex0 libfftw3-double3 libfftw3-single3 libfile-basedir-perl libfile-chdir-perl libfile-copy-recursive-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-homedir-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-which-perl libflac8 libflite1 libfltk-images1.3 libfltk1.3 libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreecontact0 libfreehep-export-java libfreehep-graphics2d-java libfreehep-graphicsio-emf-java libfreehep-graphicsio-java libfreehep-graphicsio-pdf-java libfreehep-graphicsio-ps-java libfreehep-graphicsio-svg-java libfreehep-graphicsio-swf-java libfreehep-graphicsio-tests-java libfreehep-io-java libfreehep-swing-java libfreehep-util-java libfreehep-xml-java libfreetype6 libfreezethaw-perl libftgl2 libg20 libgcc-4.9-dev libgd-graph-perl libgd-perl libgd-svg-perl libgd-text-perl libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgenometools0 libgetopt-euclid-perl libgetopt-simple-perl libgettextpo-dev libgettextpo0 libgflags2 libgfortran-4.9-dev libgfortran3 libgif4 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglew1.10 libglib2.0-0 libglib2.0-data libglpk-java libglpk36 libglu1-mesa libgmp-dev libgmp10 libgmpxx4ldbl libgnuinet-java libgnumail-java libgnustep-base1.24 libgnustep-gui0.24 libgnutls-deb0-28 libgo-perl libgomp1 libgoogle-glog0 libgphoto2-6 libgphoto2-l10n libgphoto2-port10 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgtextutils0 libgtk-3-0 libgtk-3-bin libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgtkglext1 libguard-perl libgudev-1.0-0 libgusb2 libgvc6 libgvpr2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libhdf5-8 libheap-perl libhmsbeagle1 libhogweed2 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttpclient-java libhttpcore-java libhttpmime-java libhwloc-plugins libhwloc5 libibverbs1 libice-dev libice6 libicu52 libidn11 libieee1284-3 libijs-0.35 libilmbase6 libimport-into-perl libindirect-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libisorelax-java libitext-java libitext5-java libitm1 libjaba-client-java libjam-java libjas-plotter-java libjasper1 libjava-xmlbuilder-java libjaxen-java libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjcommon-java libjdom1-java libjebl2-java libjellyfish-2.0-2 libjets3t-java libjgoodies-common-java libjgoodies-forms-java libjmol-java libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-prototype libjs-scriptaculous libjs-sphinxdoc libjs-underscore libjsch-java libjson-c2 libjson-glib-1.0-0 libjson-glib-1.0-common libjson-perl libjson-xs-perl libjsoncpp0 libjswingreader-java libjzlib-java libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-allutils-perl liblist-moreutils-perl libllvm3.5 liblog-message-perl liblog-message-simple-perl liblog4cpp5 liblog4j1.2-java liblqr-1-0 liblsan0 libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic1 libmagickcore-6.q16-2 libmagickcore-6.q16-2-extra libmagickwand-6.q16-2 libmail-java libmail-sendmail-perl libmailtools-perl libmaloc1 libmath-bezier-perl libmath-derivative-perl libmath-random-mt-perl libmath-round-perl libmath-spline-perl libmath-tamuanova-perl libmath-vec-perl libmath-vecstat-perl libmiglayout-java libmime-tools-perl libmldbm-perl libmng1 libmodule-build-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmotif-common libmpc3 libmpdec2 libmpfr4 libmro-compat-perl libmsv-java libmultidimensional-perl libmysql-java libmysqlclient18 libnb-org-openide-util-java libnb-org-openide-util-lookup-java libncbi6 libncurses5-dev libncursesw5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetpbm10 libnettle4 libnotify4 libnspr4 libnss3 libnuma1 libobjc4 libogg0 libole-storage-lite-perl libopenexr6 libopenjpeg5 libopenmpi1.6 libopenms1.11 liborc-0.4-0 liboro-java libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpam-systemd libpango-1.0-0 libpango1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3-dev libpcrecpp0 libpcsclite1 libperl4-corelibs-perl libperl5.20 libperlio-gzip-perl libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpod-coverage-perl libpod-latex-perl libpod-readme-perl libpolkit-agent-1-0 libpolkit-backend-1-0 libpolkit-gobject-1-0 libpoppler-qt4-4 libpoppler46 libpopt0 libpostscript-perl libpotrace0 libpq5 libprotobuf9 libproxy1 libptexenc1 libpth20 libpthread-stubs0-dev libpulse0 libpvm3 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libqt4-network libqt4-opengl libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libqtwebkit4 libquadmath0 libreadline-dev libreadline6-dev libreadonly-perl libregexp-common-perl libregexp-java librelaxng-datatype-java librelion-1.3-1 librest-0.7-0 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libruby2.1 libsam-java libsane libsane-common libsane-extras libsane-extras-common libsasl2-2 libsasl2-modules libsasl2-modules-db libsaxonb-java libsctp1 libsdl1.2debian libservlet2.5-java libset-intspan-perl libset-scalar-perl libsigsegv2 libsm-dev libsm6 libsndfile1 libsnp-sites1 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsprng2 libsqlite0 libsqlite3-0 libsquizz libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstdc++-4.9-dev libstrictures-perl libstring-approx-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libsvm3 libsynctex1 libsys-hostname-long-perl libtablelayout-java libtamuanova-0.2 libtask-weaken-perl libtasn1-6 libtbb2 libtcl8.5 libtcl8.6 libtcmalloc-minimal4 libtdb1 libterm-readkey-perl libterm-ui-perl libtest-pod-perl libtext-format-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtheora0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtinyxml2.6.2 libtk8.5 libtk8.6 libtre5 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libunicode-map-perl libunistring0 libunwind8 liburi-perl libusb-1.0-0 libutempter0 libv4l-0 libv4lconvert0 libvamsas-client-java libvibrant6b libvisual-0.4-0 libvisual-0.4-plugins libvm-ec2-perl libvorbis0a libvorbisenc2 libvorbisfile3 libvpx1 libvte-common libvte9 libwayland-client0 libwayland-cursor0 libwebp5 libwebpdemux1 libwebpmux1 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase3.0-0 libwxgtk3.0-0 libx11-6 libx11-data libx11-dev libx11-doc libx11-protocol-perl libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxm4 libxml-checker-perl libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt-dev libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzeep3.0 libzzip-0-13 linux-libc-dev littler lksctp-tools lmodern logol-bin loki ltrsift lua-filesystem lua-lpeg lua-md5 lynx lynx-cur macs mafft make man-db manpages manpages-dev mapsembler2 maq maqview massxpert massxpert-data med-bio med-config med-tasks melting menu metastudent metastudent-data metastudent-data-2 microbiomeutil microbiomeutil-data mime-support minia mipe mira-assembler mknfonts.tool mlv-smile mothur mpi-default-bin mrbayes mrs mummer muscle mustang mysql-client mysql-client-5.5 mysql-common nast-ier ncbi-blast+ ncbi-data ncbi-epcr ncbi-seg ncbi-tools-bin ncbi-tools-x11 ncoils neobio netbase netpbm njplot norsnet norsp notification-daemon ocl-icd-libopencl1 openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless openmpi-bin openmpi-common openms openms-common openssh-client openssl paraclu parsinsert patch pdb2pqr perl perl-doc perl-modules perl-tk perlprimer perm phylip phyml phyutility picard-tools plasmidomics plink po-debconf poa policykit-1 poppler-data populations pp-popularity-contest prank predictnls predictprotein prerex preview-latex-style prime-phylo primer3 proalign probabel probalign probcons proda prodigal profbval profisis profnet-bval profnet-chop profnet-con profnet-isis profnet-md profnet-norsnet profnet-prof profnet-snapfun profphd profphd-net profphd-utils proftmb prosper ps2eps pvm pycorrfit pymol pynast pyqi pyscanfcs python python-all python-all-dev python-ball python-ballview python-biom-format python-biopython python-biopython-doc python-cairo python-chardet python-cogent python-crypto python-dateutil python-decorator python-dev python-docutils python-egenix-mxdatetime python-egenix-mxtools python-gdata python-glade2 python-gmpy python-gobject-2 python-gtk2 python-h5py python-htseq python-imaging python-jinja2 python-lxml python-mako python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-mock python-mpi4py python-mpmath python-multipletau python-mysqldb python-nose python-numpy python-pexpect python-pil python-pkg-resources python-pmw python-pyfits python-pyglet python-pygments python-pyparsing python-pyrex python-pysam python-pysqlite2 python-qcli python-renderpm python-reportlab python-reportlab-accel python-roman python-scipy python-simplegeneric python-sip python-six python-sphinx python-sqlalchemy python-sqlalchemy-ext python-support python-sympy python-tk python-tz python-wxgtk3.0 python-wxversion python-yaml python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3-nose python3-pkg-resources python3.4 python3.4-minimal qiime qiime-data qtcore4-l10n r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-hilbertvis r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-ape r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-boot r-cran-brew r-cran-checkmate r-cran-chron r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-domc r-cran-doparallel r-cran-evaluate r-cran-fail r-cran-fastcluster r-cran-foreach r-cran-foreign r-cran-formula r-cran-g.data r-cran-genabel r-cran-genabel.data r-cran-getopt r-cran-ggplot2 r-cran-gtable r-cran-hmisc r-cran-hwriter r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-mapproj r-cran-maps r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nnet r-cran-optparse r-cran-permute r-cran-pkgkitten r-cran-plyr r-cran-proto r-cran-qtl r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-sp r-cran-spatial r-cran-stringr r-cran-survival r-cran-tcltk2 r-cran-testthat r-cran-vegan r-cran-xml r-doc-html r-other-bio3d r-other-mott-happy.hbrem r-recommended rasmol raster3d rate4site raxml ray readseq relion-bin rename reprof rnahybrid rsync rtax ruby ruby2.1 rubygems-integration saint samtools sane-utils science-config science-tasks seaview seqan-apps seqtk sgml-base shared-mime-info sibsim4 sigma-align sim4 smalt snap snp-sites soapdenovo soapdenovo2 sphinx-common sphinx-doc sqlite3 squizz sra-toolkit sra-toolkit-libs0 ssake ssl-cert staden staden-common staden-io-lib-utils swi-prolog swi-prolog-nox swi-prolog-x t-coffee tabix tasksel tasksel-data tcl tcl8.6 tcllib tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-math-extra texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc theseus tigr-glimmer tipa tk tk-table tk8.6 tk8.6-blt2.5 tklib tm-align tophat topp transtermhp tree-puzzle tree-puzzle-doc treeviewx trimmomatic ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-dejavu ttf-dejavu-core ttf-dejavu-extra tzdata-java uc-echo ucf unzip update-inetd vcftools velvet velvetoptimiser vprerex wigeon wise wise-data x11-common x11-utils x11-xserver-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev xauth xbitmaps xdg-user-dirs xdg-utils xkb-data xml-core xorg-sgml-doctools xsltproc xterm xtrans-dev xz-utils zalign zip zlib1g-dev Suggested packages: altree-examples ant-doc ant-gcj default-jdk java-compiler java-sdk libbcel-java ivy ant-optional-gcj antlr javacc jython libbsf-java libcommons-net-java libjaxp1.3-java libjdepend-java libxalan2-java www-browser apache2-doc apache2-suexec-pristine apache2-suexec-custom aspell-doc spellutils autodocktools binutils-doc mysql-server gmap paml ncbi-rrna-data blends-doc blt-demo bowtie-examples bowtie2-examples xfig wamerican wordlist whois vacation devscripts cpp-doc gcc-4.9-locales dbus-x11 dh-make debian-keyring meshlab embassy emboss-doc emboss-test fastlink-doc fontforge bash-completion g++-multilib g++-4.9-multilib gcc-4.9-doc libstdc++6-4.9-dbg gamgi-data gamgi-doc garlic-doc openbabel gawk-doc gbrowse-data gbrowse-calign libfile-nfslock-perl gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-4.9-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath0-dbg gdpc-examples gqview gettext-doc postscript-viewer gfortran-multilib gfortran-doc gfortran-4.9-multilib gfortran-4.9-doc libgfortran3-dbg ghostscript-x feedgnuplot gnuplot-doc libgnuplot-iostream-dev python-gnuplot gnustep-base-doc graphviz-doc groff tcsh c-shell gvfs hmmer-doc hmmer2-doc hmmer2-pvm ppp rdnssd net-tools imagemagick-doc autotrace cups-bsd lpr lprng enscript ffmpeg gimp grads hp2xx html2ps libwmf-bin mplayer povray radiance texlive-base-bin transfig ufraw-batch iproute2-doc ipython-doc ipython-notebook ipython-qtconsole python-profiler python-zmq resolvconf avahi-autoipd isoquery equivs javahelp2-doc junit-doc parallel libevent-perl libio-async-perl libpoe-perl libesd0 libesd-alsa0 lrzip libasound2-plugins alsa-utils nas libdigest-hmac-perl libgssapi-perl libaxis-java-doc libbcmail-java-doc libbcpkix-java-doc libbcprov-java-doc libxml-sax-expatxs-perl java-virtual-machine libjgrapht-java libbiojava-java-doc glibc-doc libcanberra-gtk0 libcanberra-pulse libcastor-java-doc libcommons-collections3-java-doc libxz-java libcommons-dbcp-java-doc libgeronimo-jta-1.1-spec-java libcommons-discovery-java-doc libcommons-httpclient-java-doc libcommons-io-java-doc libcommons-jexl2-java-doc libcommons-lang-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java libcommons-net2-java-doc blcr-dkms cups-common libnet-daemon-perl libsql-statement-perl libdom4j-java-doc libfann-dev libfann-doc libfftw3-bin libfftw3-dev alsa-base fonts-dustin libgd-tools glew-utils libiodbc2-dev libmysqlclient-dev libgmp10-doc libmpfr-dev libgnumail-java-doc gnutls-bin gphoto2 gtkam gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html krb5-doc krb5-user gstreamer-codec-install gnome-codec-install gstreamer1.0-tools libhsqldb-java-doc libdata-dump-perl libhtml-element-extended-perl libhwloc-contrib-plugins libice-doc libdb-file-lock-perl libfile-readbackwards-perl libitext-java-gcj libxml-security-java libitext5-java-doc libjasper-runtime libjava-xmlbuilder-java-doc libjcommon-java-doc libjdom1-java-doc libjgoodies-common-java-doc libjgoodies-forms-java-doc libjmol-java-doc libjs-jquery-ui-docs liblcms2-utils liblog4j1.2-java-doc liblzma-doc inkscape libmail-java-doc libswt-gtk-3-java libslf4j-java ncurses-doc libmime-base64-perl openms-doc uuid libscalar-number-perl pciutils pcscd pulseaudio libqt4-dev qt4-qtconfig readline-doc librsvg2-bin avahi-daemon hplip hpoj libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libsaxonb-java-doc libsm-doc libmime-lite-perl libnet-jabber-perl libstdc++-4.9-doc tcl8.5 tk8.5 tre-agrep libdevel-stacktrace-perl libauthen-ntlm-perl libxcb-doc libxerces2-java-doc libxerces2-java-gcj libxml-commons-resolver1.1-java-doc libunicode-map8-perl libunicode-string-perl xml-twig-tools libxom-java-doc libxt-doc libyaml-shell-perl loki-doc make-doc less man-browser massxpert-doc abyss acacia act amos-assembler amoscmp apollo arachne arb artemis asap augustus axparafit axpcoords bagpipe bambus beads beast-mcmc biceps big-blast bigsdb biomaj-watcher bitseq blat blimps-utils blixem btk-core cactus caftools cain cap3 cdna-db cinema clonalorigin clustalw-mpi cluster3 cmap coalesce codonw compclust contralign coot copycat crac crossbow cufflinks cytoscape das-proserver dazzle decipher e-hive ecell eigensoft elph embassy-phylip emboss-explorer emmax emperor ensembl est-db estferret estscan exalt excavator fasta figaro finex fluctuate forester freebayes fsa galaxy gassst gbioseq gbrowse-syn genemark genesplicer genetrack genezilla genographer ghemical glimmerhmm gmv grabix grogui haploview hawkeye hexamer hilbertvisgui igv jbrowse jigsaw jstreeview kclust kempbasu lagan lamarc logomat-m lucy mach-haplotyper mage2tab maker2 martj maude mauvealigner maxd melting-gui meme mesquite metarep migrate minimus mirbase mobyle mobyle-programs mobyle-tutorials modeller molekel mosaik-aligner mpsqed msatfinder mugsy mummergpu murasaki mview ngila ngsqctoolkit nw-align oases obo-edit oligoarrayaux omegamap operondb pal2nal partigene patman patristic pcma pfaat pftools phagefinder phpphylotree phylographer phyloviz-core phylowin plato profit prot4est pscan-tfbs psipred pyrophosphate-tools python-orange python-reaper qtlcart r-cran-boolnet r-other-valdar-bagphenotype.library raccoon rbs-finder rdp-classifier recombine relion-bin-mpi relion-gui repeatmasker rmblast roche454ace2caf rose rosetta seq-gen sequenceconverter.app sga sift situs snpeff spades spice splitstree spread-phy ssaha strap strap-base tacg taverna taxinspector tetra tigr-assembler tigr-glimmer-mg trace2dbest tracetuner treebuilder3d treetime tripal trnascan-se twain ugene unc-fish uniprime varscan vienna-rna vmd wgs-assembler x-tandem-pipeline zodiac-zeden menu-l10n gksu kde-runtime ktsuss mira-examples mira-doc mrbayes-doc mustang-testdata opencl-icd openjdk-7-demo openjdk-7-source visualvm icedtea-7-plugin icedtea-7-jre-jamvm libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic openmpi-checkpoint openms-doc1.11 ssh-askpass libpam-ssh keychain monkeysphere diffutils-doc libterm-readline-gnu-perl libterm-readline-perl-perl libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl perlprimer-doc phylip-doc libmail-box-perl poppler-utils fonts-arphic-ukai fonts-arphic-uming fonts-nanum pp-cache-mgr predictprotein-nonfree probcons-extra profchop profcon metadisorder snapfun pdf-viewer uclust python-rdflib python-psycopg2 python-cogent-doc python-crypto-dbg python-crypto-doc texlive-lang-french python-egenix-mxdatetime-dbg python-egenix-mxdatetime-doc python-egenix-mxtools-dbg python-egenix-mxtools-doc python-gdata-doc python-twisted-core python-gtk2-doc python-gobject-2-dbg python-jinja2-doc python-lxml-dbg python-beaker python-mako-doc gir1.2-gtk-3.0 python-cairocffi python-configobj python-excelerator python-gobject python-matplotlib-doc python-qt4 python-tornado python-traits ttf-staypuft python-mock-doc python-gmpy2 python-mpmath-doc python-mysqldb-dbg python-coverage python-nose-doc python-numpy-dbg python-numpy-doc python-pexpect-doc python-pil-doc python-pil-dbg python-distribute python-distribute-doc python-pmw-doc pyfits-utils ttf-bitstream-vera python-pysqlite2-doc python-pysqlite2-dbg python-renderpm-dbg python-egenix-mxtexttools python-reportlab-doc libjs-mathjax python-sqlalchemy-doc python-kinterbasdb python-pymssql tix python-tk-dbg python2.7-doc python3-doc python3-tk python3-venv python3-setuptools python3.4-venv python3.4-doc torque-client r-doc-info r-doc-pdf r-mathlib r-base-html texinfo r-bioc-snpstats r-cran-expm r-cran-rmysql r-cran-genetics r-cran-haplo.stats r-bioc-qvalue r-cran-mapdata r-cran-snow r-cran-inline r-cran-runit r-cran-rgdal r-cran-rgeos r-cran-devtools r-cran-scatterplot3d r-cran-rgl r-cran-ncdf r-cran-bigmemory r-cran-rocr rasmol-doc raster3d-doc openssh-server ri ruby-dev bundler unpaper avida-base genesis med-bio-dev sgml-base-doc sqlite3-doc ssake-examples openssl-blacklist staden-doc staden-io-lib-examples prolog-el t-coffee-examples tcl-tclreadline latexdiff latexmk dvidvi fragmaster lacheck purifyeps xindy chktex psutils t1utils cm-super libtcltk-ruby dot2tex treetool velvet-example wise-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin xfonts-cyrillic Recommended packages: libgd-gd2-perl libstorable-perl libstdc++-4.8-dev libstdc++-dev libarchive-tar-perl libcompress-zlib-perl python-ctypes r-cran-vr wish The following NEW packages will be installed: abacas acedb-other acedb-other-belvu acedb-other-dotter adun.app adwaita-icon-theme aevol aglfn alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2 apache2-bin apache2-data apache2-utils apbs aragorn arden aspell aspell-en at-spi2-core autodock autodock-vina autogrid autopoint autotools-dev ballview bamtools bauble bc bedtools binfmt-support binutils biomaj bioperl bioperl-run biosquid blast2 blends-common blt bowtie bowtie2 boxshade bsdmainutils build-essential bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cassiopee cd-hit cdbfasta cdbs chimeraslayer circos circos-tools clearcut clonalframe clustalo clustalw clustalx colord colord-data concavity conservation-code cpp cpp-4.9 critterding curl cython dbus dconf-gsettings-backend dconf-service debhelper default-jre default-jre-headless dh-python dialign dialign-tx dialign-tx-data dictionaries-common discosnp disulfinder disulfinder-data dmidecode dnaclust docutils-common docutils-doc dpkg-dev dssp dvipng edtsurf emacsen-common embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exonerate fakeroot fastaq fastdnaml fastjar fastlink fastqc fasttree fastx-toolkit ffindex figtree file filo fitgcp flexbar fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-droid fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix fonts-texgyre freecontact freeglut3 g++ g++-4.9 gamgi garlic gasic gawk gbrowse gcc gcc-4.9 gdpc genometools genometools-common gentle gettext gettext-base gff2aplot gff2ps gfortran gfortran-4.9 ghostscript giira glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnuplot gnuplot-data gnuplot-qt gnuplot-tex gnustep-back-common gnustep-back0.24 gnustep-back0.24-cairo gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gui-common gnustep-gui-runtime graphviz grinder groff-base gromacs gromacs-data gsettings-desktop-schemas gsfonts gstreamer1.0-plugins-base hhsuite hhsuite-data hicolor-icon-theme hmmer hmmer2 icedtea-netx-common idba ifupdown imagemagick imagemagick-6.q16 imagemagick-common infernal init-system-helpers intltool-debian ipig iproute2 ipython isc-dhcp-client isc-dhcp-common iso-codes jalview jarwrapper java-common java-wrappers javahelp2 javascript-common jellyfish jmol jmol-applet junit junit4 kalign king kissplice krb5-locales ksh laptop-detect last-align libace-perl libai-fann-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libamd2.3.1 libanfo0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libao-common libao4 libapache-dbi-perl libapache-mime4j-java libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libarchive13 libargtable2-0 libarray-compare-perl libart-2.0-2 libasan1 libasound2 libasound2-data libaspell15 libasprintf-dev libasprintf0c2 libasync-interrupt-perl libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatm1 libatomic1 libatspi2.0-0 libaudio2 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libb-hooks-op-check-perl libball1.4 libball1.4-data libballview1.4 libbambamc0 libbamtools2.3.0 libbareword-filehandles-perl libbcmail-java libbcpkix-java libbcprov-java libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libblas-dev libblas3 libboost-chrono1.55.0 libboost-date-time1.55.0 libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-math1.55.0 libboost-mpi1.55.0 libboost-program-options1.55.0 libboost-random1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libboost-timer1.55.0 libbsd-resource-perl libbsd0 libbytecode-java libbz2-dev libc-dev-bin libc6-dev libcaca0 libcache-cache-perl libcairo-gobject2 libcairo2 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcap-ng0 libcarp-always-perl libcarp-clan-perl libcassie1 libcastor-core-java libcastor-xml-java libcbf0 libcdparanoia0 libcdt5 libcfitsio2 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcloog-isl4 libcneartree5 libcofoja-java libcolamd2.8.0 libcolord2 libcolorhug2 libcommon-sense-perl libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-compress-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-math3-java libcommons-net1-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconfig-inifiles-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcqrlib2 libcr0 libcroco3 libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libcvector2 libdata-dumper-simple-perl libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdconf1 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdirectfb-1.2-9 libdjvulibre-text libdjvulibre21 libdns-export100 libdom4j-java libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libelfg0 libelk0 libencode-locale-perl liberror-perl libev-perl libexif12 libexpat1 libexpat1-dev libexporter-tiny-perl libfakeroot libfann2 libfcgi-perl libffi6 libffindex0 libfftw3-double3 libfftw3-single3 libfile-basedir-perl libfile-chdir-perl libfile-copy-recursive-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-homedir-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-which-perl libflac8 libflite1 libfltk-images1.3 libfltk1.3 libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreecontact0 libfreehep-export-java libfreehep-graphics2d-java libfreehep-graphicsio-emf-java libfreehep-graphicsio-java libfreehep-graphicsio-pdf-java libfreehep-graphicsio-ps-java libfreehep-graphicsio-svg-java libfreehep-graphicsio-swf-java libfreehep-graphicsio-tests-java libfreehep-io-java libfreehep-swing-java libfreehep-util-java libfreehep-xml-java libfreetype6 libfreezethaw-perl libftgl2 libg20 libgcc-4.9-dev libgd-graph-perl libgd-perl libgd-svg-perl libgd-text-perl libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgenometools0 libgetopt-euclid-perl libgetopt-simple-perl libgettextpo-dev libgettextpo0 libgflags2 libgfortran-4.9-dev libgfortran3 libgif4 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglew1.10 libglib2.0-0 libglib2.0-data libglpk-java libglpk36 libglu1-mesa libgmp-dev libgmp10 libgmpxx4ldbl libgnuinet-java libgnumail-java libgnustep-base1.24 libgnustep-gui0.24 libgnutls-deb0-28 libgo-perl libgomp1 libgoogle-glog0 libgphoto2-6 libgphoto2-l10n libgphoto2-port10 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgtextutils0 libgtk-3-0 libgtk-3-bin libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgtkglext1 libguard-perl libgudev-1.0-0 libgusb2 libgvc6 libgvpr2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libhdf5-8 libheap-perl libhmsbeagle1 libhogweed2 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttpclient-java libhttpcore-java libhttpmime-java libhwloc-plugins libhwloc5 libibverbs1 libice-dev libice6 libicu52 libidn11 libieee1284-3 libijs-0.35 libilmbase6 libimport-into-perl libindirect-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libisorelax-java libitext-java libitext5-java libitm1 libjaba-client-java libjam-java libjas-plotter-java libjasper1 libjava-xmlbuilder-java libjaxen-java libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjcommon-java libjdom1-java libjebl2-java libjellyfish-2.0-2 libjets3t-java libjgoodies-common-java libjgoodies-forms-java libjmol-java libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-prototype libjs-scriptaculous libjs-sphinxdoc libjs-underscore libjsch-java libjson-c2 libjson-glib-1.0-0 libjson-glib-1.0-common libjson-perl libjson-xs-perl libjsoncpp0 libjswingreader-java libjzlib-java libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-allutils-perl liblist-moreutils-perl libllvm3.5 liblog-message-perl liblog-message-simple-perl liblog4cpp5 liblog4j1.2-java liblqr-1-0 liblsan0 libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic1 libmagickcore-6.q16-2 libmagickcore-6.q16-2-extra libmagickwand-6.q16-2 libmail-java libmail-sendmail-perl libmailtools-perl libmaloc1 libmath-bezier-perl libmath-derivative-perl libmath-random-mt-perl libmath-round-perl libmath-spline-perl libmath-tamuanova-perl libmath-vec-perl libmath-vecstat-perl libmiglayout-java libmime-tools-perl libmldbm-perl libmng1 libmodule-build-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmotif-common libmpc3 libmpdec2 libmpfr4 libmro-compat-perl libmsv-java libmultidimensional-perl libmysql-java libmysqlclient18 libnb-org-openide-util-java libnb-org-openide-util-lookup-java libncbi6 libncurses5-dev libncursesw5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetpbm10 libnettle4 libnotify4 libnspr4 libnss3 libnuma1 libobjc4 libogg0 libole-storage-lite-perl libopenexr6 libopenjpeg5 libopenmpi1.6 libopenms1.11 liborc-0.4-0 liboro-java libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpam-systemd libpango-1.0-0 libpango1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3-dev libpcrecpp0 libpcsclite1 libperl4-corelibs-perl libperl5.20 libperlio-gzip-perl libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpod-coverage-perl libpod-latex-perl libpod-readme-perl libpolkit-agent-1-0 libpolkit-backend-1-0 libpolkit-gobject-1-0 libpoppler-qt4-4 libpoppler46 libpopt0 libpostscript-perl libpotrace0 libpq5 libprotobuf9 libproxy1 libptexenc1 libpth20 libpthread-stubs0-dev libpulse0 libpvm3 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libqt4-network libqt4-opengl libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libqtwebkit4 libquadmath0 libreadline-dev libreadline6-dev libreadonly-perl libregexp-common-perl libregexp-java librelaxng-datatype-java librelion-1.3-1 librest-0.7-0 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libruby2.1 libsam-java libsane libsane-common libsane-extras libsane-extras-common libsasl2-2 libsasl2-modules libsasl2-modules-db libsaxonb-java libsctp1 libsdl1.2debian libservlet2.5-java libset-intspan-perl libset-scalar-perl libsigsegv2 libsm-dev libsm6 libsndfile1 libsnp-sites1 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsprng2 libsqlite0 libsqlite3-0 libsquizz libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstdc++-4.9-dev libstrictures-perl libstring-approx-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libsvm3 libsynctex1 libsys-hostname-long-perl libtablelayout-java libtamuanova-0.2 libtask-weaken-perl libtasn1-6 libtbb2 libtcl8.5 libtcl8.6 libtcmalloc-minimal4 libtdb1 libterm-readkey-perl libterm-ui-perl libtest-pod-perl libtext-format-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtheora0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtinyxml2.6.2 libtk8.5 libtk8.6 libtre5 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libunicode-map-perl libunistring0 libunwind8 liburi-perl libusb-1.0-0 libutempter0 libv4l-0 libv4lconvert0 libvamsas-client-java libvibrant6b libvisual-0.4-0 libvisual-0.4-plugins libvm-ec2-perl libvorbis0a libvorbisenc2 libvorbisfile3 libvpx1 libvte-common libvte9 libwayland-client0 libwayland-cursor0 libwebp5 libwebpdemux1 libwebpmux1 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase3.0-0 libwxgtk3.0-0 libx11-6 libx11-data libx11-dev libx11-doc libx11-protocol-perl libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxm4 libxml-checker-perl libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt-dev libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzeep3.0 libzzip-0-13 linux-libc-dev littler lksctp-tools lmodern logol-bin loki ltrsift lua-filesystem lua-lpeg lua-md5 lynx lynx-cur macs mafft make man-db manpages manpages-dev mapsembler2 maq maqview massxpert massxpert-data med-bio med-config med-tasks melting menu metastudent metastudent-data metastudent-data-2 microbiomeutil microbiomeutil-data mime-support minia mipe mira-assembler mknfonts.tool mlv-smile mothur mpi-default-bin mrbayes mrs mummer muscle mustang mysql-client mysql-client-5.5 mysql-common nast-ier ncbi-blast+ ncbi-data ncbi-epcr ncbi-seg ncbi-tools-bin ncbi-tools-x11 ncoils neobio netbase netpbm njplot norsnet norsp notification-daemon ocl-icd-libopencl1 openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless openmpi-bin openmpi-common openms openms-common openssh-client openssl paraclu parsinsert patch pdb2pqr perl perl-doc perl-modules perl-tk perlprimer perm phylip phyml phyutility picard-tools plasmidomics plink po-debconf poa policykit-1 poppler-data populations pp-popularity-contest prank predictnls predictprotein prerex preview-latex-style prime-phylo primer3 proalign probabel probalign probcons proda prodigal profbval profisis profnet-bval profnet-chop profnet-con profnet-isis profnet-md profnet-norsnet profnet-prof profnet-snapfun profphd profphd-net profphd-utils proftmb prosper ps2eps pvm pycorrfit pymol pynast pyqi pyscanfcs python python-all python-all-dev python-ball python-ballview python-biom-format python-biopython python-biopython-doc python-cairo python-chardet python-cogent python-crypto python-dateutil python-decorator python-dev python-docutils python-egenix-mxdatetime python-egenix-mxtools python-gdata python-glade2 python-gmpy python-gobject-2 python-gtk2 python-h5py python-htseq python-imaging python-jinja2 python-lxml python-mako python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-mock python-mpi4py python-mpmath python-multipletau python-mysqldb python-nose python-numpy python-pexpect python-pil python-pkg-resources python-pmw python-pyfits python-pyglet python-pygments python-pyparsing python-pyrex python-pysam python-pysqlite2 python-qcli python-renderpm python-reportlab python-reportlab-accel python-roman python-scipy python-simplegeneric python-sip python-six python-sphinx python-sqlalchemy python-sqlalchemy-ext python-support python-sympy python-tk python-tz python-wxgtk3.0 python-wxversion python-yaml python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3-nose python3-pkg-resources python3.4 python3.4-minimal qiime qiime-data qtcore4-l10n r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-hilbertvis r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-ape r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-boot r-cran-brew r-cran-checkmate r-cran-chron r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-domc r-cran-doparallel r-cran-evaluate r-cran-fail r-cran-fastcluster r-cran-foreach r-cran-foreign r-cran-formula r-cran-g.data r-cran-genabel r-cran-genabel.data r-cran-getopt r-cran-ggplot2 r-cran-gtable r-cran-hmisc r-cran-hwriter r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-mapproj r-cran-maps r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nnet r-cran-optparse r-cran-permute r-cran-pkgkitten r-cran-plyr r-cran-proto r-cran-qtl r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-sp r-cran-spatial r-cran-stringr r-cran-survival r-cran-tcltk2 r-cran-testthat r-cran-vegan r-cran-xml r-doc-html r-other-bio3d r-other-mott-happy.hbrem r-recommended rasmol raster3d rate4site raxml ray readseq relion-bin rename reprof rnahybrid rsync rtax ruby ruby2.1 rubygems-integration saint samtools sane-utils science-biology science-config science-tasks seaview seqan-apps seqtk sgml-base shared-mime-info sibsim4 sigma-align sim4 smalt snap snp-sites soapdenovo soapdenovo2 sphinx-common sphinx-doc sqlite3 squizz sra-toolkit sra-toolkit-libs0 ssake ssl-cert staden staden-common staden-io-lib-utils swi-prolog swi-prolog-nox swi-prolog-x t-coffee tabix tasksel tasksel-data tcl tcl8.6 tcllib tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-math-extra texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc theseus tigr-glimmer tipa tk tk-table tk8.6 tk8.6-blt2.5 tklib tm-align tophat topp transtermhp tree-puzzle tree-puzzle-doc treeviewx trimmomatic ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-dejavu ttf-dejavu-core ttf-dejavu-extra tzdata-java uc-echo ucf unzip update-inetd vcftools velvet velvetoptimiser vprerex wigeon wise wise-data x11-common x11-utils x11-xserver-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev xauth xbitmaps xdg-user-dirs xdg-utils xkb-data xml-core xorg-sgml-doctools xsltproc xterm xtrans-dev xz-utils zalign zip zlib1g-dev 0 upgraded, 1445 newly installed, 0 to remove and 0 not upgraded. Need to get 2091 MB of archives. After this operation, 5928 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libboost-iostreams1.55.0 amd64 1.55.0+dfsg-3 [48.9 kB] Get:2 http://deb.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:3 http://deb.debian.org/debian/ jessie/main libjson-c2 amd64 0.11-4 [24.8 kB] Get:4 http://deb.debian.org/debian/ jessie/main libpipeline1 amd64 1.4.0-1 [27.9 kB] Get:5 http://deb.debian.org/debian/ jessie/main libpopt0 amd64 1.16-10 [49.2 kB] Get:6 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:7 http://deb.debian.org/debian/ jessie/main groff-base amd64 1.22.2-8 [1183 kB] Get:8 http://deb.debian.org/debian/ jessie/main bsdmainutils amd64 9.0.6 [183 kB] Get:9 http://deb.debian.org/debian/ jessie/main man-db amd64 2.7.0.2-5 [1000 kB] Get:10 http://deb.debian.org/debian/ jessie/main tasksel-data all 3.31+deb8u1 [18.0 kB] Get:11 http://deb.debian.org/debian/ jessie/main tasksel all 3.31+deb8u1 [95.9 kB] Get:12 http://deb.debian.org/debian/ jessie/main libasprintf0c2 amd64 0.19.3-2 [31.3 kB] Get:13 http://deb.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:14 http://deb.debian.org/debian/ jessie/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:15 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:16 http://deb.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:17 http://deb.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:18 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:19 http://deb.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:20 http://deb.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:21 http://deb.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:22 http://deb.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:23 http://deb.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:24 http://deb.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:25 http://deb.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:26 http://deb.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:27 http://deb.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:28 http://deb.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:29 http://deb.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:30 http://deb.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:31 http://deb.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u4 [250 kB] Get:32 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:33 http://deb.debian.org/debian/ jessie/main libwrap0 amd64 7.6.q-25 [58.5 kB] Get:34 http://deb.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:35 http://deb.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:36 http://deb.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:37 http://deb.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:38 http://deb.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:39 http://deb.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:40 http://deb.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:41 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:42 http://deb.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:43 http://deb.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:44 http://deb.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:45 http://deb.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:46 http://deb.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:47 http://deb.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:48 http://deb.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:49 http://deb.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:50 http://deb.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:51 http://deb.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u12 [1042 kB] Get:52 http://deb.debian.org/debian/ jessie/main apache2-utils amd64 2.4.10-10+deb8u12 [196 kB] Get:53 http://deb.debian.org/debian/ jessie/main apache2-data all 2.4.10-10+deb8u12 [163 kB] Get:54 http://deb.debian.org/debian/ jessie/main apache2 amd64 2.4.10-10+deb8u12 [208 kB] Get:55 http://deb.debian.org/debian/ jessie/main fonts-circos-symbols all 0.66-1 [31.6 kB] Get:56 http://deb.debian.org/debian/ jessie/main fonts-cmu all 0.7.0-3 [4874 kB] Get:57 http://deb.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:58 http://deb.debian.org/debian/ jessie/main libcarp-always-perl all 0.12-1 [9142 B] Get:59 http://deb.debian.org/debian/ jessie/main libconfig-general-perl all 2.56-1 [70.0 kB] Get:60 http://deb.debian.org/debian/ jessie/main libdata-dumper-simple-perl all 0.11-4 [13.1 kB] Get:61 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:62 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:63 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:64 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:65 http://deb.debian.org/debian/ jessie/main fonts-liberation all 1.07.4-1 [835 kB] Get:66 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:67 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:68 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:69 http://deb.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:70 http://deb.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:71 http://deb.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:72 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:73 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:74 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:75 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:76 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:77 http://deb.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:78 http://deb.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:79 http://deb.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:80 http://deb.debian.org/debian/ jessie/main libgetopt-simple-perl all 1.52-4 [14.4 kB] Get:81 http://deb.debian.org/debian/ jessie/main libmath-bezier-perl all 0.01-1 [7950 B] Get:82 http://deb.debian.org/debian/ jessie/main libmath-round-perl all 0.06-4 [10.1 kB] Get:83 http://deb.debian.org/debian/ jessie/main libparams-classify-perl amd64 0.013-4+b2 [24.1 kB] Get:84 http://deb.debian.org/debian/ jessie/main libmodule-runtime-perl all 0.014-1 [17.9 kB] Get:85 http://deb.debian.org/debian/ jessie/main libtry-tiny-perl all 0.22-1 [19.6 kB] Get:86 http://deb.debian.org/debian/ jessie/main libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:87 http://deb.debian.org/debian/ jessie/main libparams-validate-perl amd64 1.13-1+b1 [65.2 kB] Get:88 http://deb.debian.org/debian/ jessie/main libreadonly-perl all 2.000-1 [20.8 kB] Get:89 http://deb.debian.org/debian/ jessie/main libset-intspan-perl all 1.19-1 [26.7 kB] Get:90 http://deb.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:91 http://deb.debian.org/debian/ jessie/main liblist-allutils-perl all 0.09-1 [20.4 kB] Get:92 http://deb.debian.org/debian/ jessie/main libfile-basedir-perl all 0.03-1 [10.4 kB] Get:93 http://deb.debian.org/debian/ jessie/main libmath-vec-perl all 1.01-2 [17.7 kB] Get:94 http://deb.debian.org/debian/ jessie/main libspiffy-perl all 0.41-1 [26.1 kB] Get:95 http://deb.debian.org/debian/ jessie/main libio-all-perl all 0.79-1 [68.2 kB] Get:96 http://deb.debian.org/debian/ jessie/main libmath-vecstat-perl all 0.08-1 [9148 B] Get:97 http://deb.debian.org/debian/ jessie/main libgraphics-colornames-perl all 2.11-6 [37.7 kB] Get:98 http://deb.debian.org/debian/ jessie/main libgraphics-colorobject-perl all 0.5.0-6 [28.7 kB] Get:99 http://deb.debian.org/debian/ jessie/main libtext-format-perl all 0.59-1 [19.6 kB] Get:100 http://deb.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:101 http://deb.debian.org/debian/ jessie/main libfont-ttf-perl all 1.04-1 [355 kB] Get:102 http://deb.debian.org/debian/ jessie/main libclone-perl amd64 0.37-1+b1 [14.2 kB] Get:103 http://deb.debian.org/debian/ jessie/main circos all 0.66-1 [19.2 MB] Get:104 http://deb.debian.org/debian/ jessie/main circos-tools all 0.18-1 [13.3 MB] Get:105 http://deb.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:106 http://deb.debian.org/debian/ jessie/main fonts-droid all 1:4.4.4r2-6 [3729 kB] Get:107 http://deb.debian.org/debian/ jessie/main fonts-lato all 2.0-1 [2684 kB] Get:108 http://deb.debian.org/debian/ jessie/main libdrm2 amd64 2.4.58-2 [29.9 kB] Get:109 http://deb.debian.org/debian/ jessie/main libglapi-mesa amd64 10.3.2-1+deb8u1 [53.3 kB] Get:110 http://deb.debian.org/debian/ jessie/main libx11-xcb1 amd64 2:1.6.2-3+deb8u1 [163 kB] Get:111 http://deb.debian.org/debian/ jessie/main libxcb-dri2-0 amd64 1.10-3+b1 [12.9 kB] Get:112 http://deb.debian.org/debian/ jessie/main libxcb-dri3-0 amd64 1.10-3+b1 [11.1 kB] Get:113 http://deb.debian.org/debian/ jessie/main libxcb-glx0 amd64 1.10-3+b1 [27.4 kB] Get:114 http://deb.debian.org/debian/ jessie/main libxcb-present0 amd64 1.10-3+b1 [11.1 kB] Get:115 http://deb.debian.org/debian/ jessie/main libxcb-sync1 amd64 1.10-3+b1 [14.4 kB] Get:116 http://deb.debian.org/debian/ jessie/main libxfixes3 amd64 1:5.0.1-2+deb8u1 [21.1 kB] Get:117 http://deb.debian.org/debian/ jessie/main libxdamage1 amd64 1:1.1.4-2+b1 [14.7 kB] Get:118 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:119 http://deb.debian.org/debian/ jessie/main libxshmfence1 amd64 1.1-4 [6736 B] Get:120 http://deb.debian.org/debian/ jessie/main libxxf86vm1 amd64 1:1.1.3-1+b1 [19.6 kB] Get:121 http://deb.debian.org/debian/ jessie/main libgl1-mesa-glx amd64 10.3.2-1+deb8u1 [180 kB] Get:122 http://deb.debian.org/debian/ jessie/main libxi6 amd64 2:1.7.4-1+deb8u1 [79.9 kB] Get:123 http://deb.debian.org/debian/ jessie/main freeglut3 amd64 2.8.1-2 [124 kB] Get:124 http://deb.debian.org/debian/ jessie/main libmpfr4 amd64 3.1.2-2 [527 kB] Get:125 http://deb.debian.org/debian/ jessie/main libsigsegv2 amd64 2.10-4+b1 [29.2 kB] Get:126 http://deb.debian.org/debian/ jessie/main gawk amd64 1:4.1.1+dfsg-1 [520 kB] Get:127 http://deb.debian.org/debian/ jessie/main imagemagick-common all 8:6.8.9.9-5+deb8u12 [154 kB] Get:128 http://deb.debian.org/debian/ jessie/main libamd2.3.1 amd64 1:4.2.1-3 [26.3 kB] Get:129 http://deb.debian.org/debian/ jessie/main liblzo2-2 amd64 2.08-1.2 [54.6 kB] Get:130 http://deb.debian.org/debian/ jessie/main libarchive13 amd64 3.1.2-11+deb8u3 [271 kB] Get:131 http://deb.debian.org/debian/ jessie/main libart-2.0-2 amd64 2.3.21-2 [72.7 kB] Get:132 http://deb.debian.org/debian/ jessie/main libasan1 amd64 4.9.2-10+deb8u1 [195 kB] Get:133 http://deb.debian.org/debian/ jessie/main libasound2-data all 1.0.28-1 [64.8 kB] Get:134 http://deb.debian.org/debian/ jessie/main libasound2 amd64 1.0.28-1 [374 kB] Get:135 http://deb.debian.org/debian/ jessie/main libaspell15 amd64 0.60.7~20110707-1.3 [359 kB] Get:136 http://deb.debian.org/debian/ jessie/main libasyncns0 amd64 0.8-5 [12.5 kB] Get:137 http://deb.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:138 http://deb.debian.org/debian/ jessie/main libatk1.0-data all 2.14.0-1 [181 kB] Get:139 http://deb.debian.org/debian/ jessie/main libatk1.0-0 amd64 2.14.0-1 [92.0 kB] Get:140 http://deb.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:141 http://deb.debian.org/debian/ jessie/main libatspi2.0-0 amd64 2.14.0-1 [57.7 kB] Get:142 http://deb.debian.org/debian/ jessie/main libatk-bridge2.0-0 amd64 2.14.0-2 [54.8 kB] Get:143 http://deb.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:144 http://deb.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:145 http://deb.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:146 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:147 http://deb.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:148 http://deb.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:149 http://deb.debian.org/debian/ jessie/main libgdk-pixbuf2.0-common all 2.31.1-2+deb8u7 [294 kB] Get:150 http://deb.debian.org/debian/ jessie/main libgdk-pixbuf2.0-0 amd64 2.31.1-2+deb8u7 [167 kB] Get:151 http://deb.debian.org/debian/ jessie/main libgtk2.0-common all 2.24.25-3+deb8u2 [3137 kB] Get:152 http://deb.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:153 http://deb.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:154 http://deb.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:155 http://deb.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:156 http://deb.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:157 http://deb.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:158 http://deb.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:159 http://deb.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:160 http://deb.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:161 http://deb.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:162 http://deb.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:163 http://deb.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:164 http://deb.debian.org/debian/ jessie/main libxcomposite1 amd64 1:0.4.4-1 [17.4 kB] Get:165 http://deb.debian.org/debian/ jessie/main libxcursor1 amd64 1:1.1.14-1+deb8u1 [35.0 kB] Get:166 http://deb.debian.org/debian/ jessie/main libxinerama1 amd64 2:1.1.3-1+b1 [16.9 kB] Get:167 http://deb.debian.org/debian/ jessie/main libxrandr2 amd64 2:1.4.2-1+deb8u1 [35.5 kB] Get:168 http://deb.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:169 http://deb.debian.org/debian/ jessie/main libgtk2.0-0 amd64 2.24.25-3+deb8u2 [2302 kB] Get:170 http://deb.debian.org/debian/ jessie/main libatk-wrapper-java all 0.30.5-1 [30.3 kB] Get:171 http://deb.debian.org/debian/ jessie/main libatk-wrapper-java-jni amd64 0.30.5-1 [24.8 kB] Get:172 http://deb.debian.org/debian/ jessie/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:173 http://deb.debian.org/debian/ jessie/main libatomic1 amd64 4.9.2-10+deb8u1 [9014 B] Get:174 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:175 http://deb.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:176 http://deb.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:177 http://deb.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:178 http://deb.debian.org/debian/ jessie/main libaudio2 amd64 1.9.4-3 [79.8 kB] Get:179 http://deb.debian.org/debian/ jessie/main libboost-system1.55.0 amd64 1.55.0+dfsg-3 [30.2 kB] Get:180 http://deb.debian.org/debian/ jessie/main libboost-chrono1.55.0 amd64 1.55.0+dfsg-3 [35.1 kB] Get:181 http://deb.debian.org/debian/ jessie/main libboost-date-time1.55.0 amd64 1.55.0+dfsg-3 [41.5 kB] Get:182 http://deb.debian.org/debian/ jessie/main libboost-filesystem1.55.0 amd64 1.55.0+dfsg-3 [58.8 kB] Get:183 http://deb.debian.org/debian/ jessie/main libboost-math1.55.0 amd64 1.55.0+dfsg-3 [282 kB] Get:184 http://deb.debian.org/debian/ jessie/main libboost-serialization1.55.0 amd64 1.55.0+dfsg-3 [153 kB] Get:185 http://deb.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:186 http://deb.debian.org/debian/ jessie/main libnuma1 amd64 2.0.10-1 [32.5 kB] Get:187 http://deb.debian.org/debian/ jessie/main libhwloc5 amd64 1.10.0-3 [86.9 kB] Get:188 http://deb.debian.org/debian/ jessie/main libcr0 amd64 0.8.5-2.2 [32.7 kB] Get:189 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:190 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:191 http://deb.debian.org/debian/ jessie/main libibverbs1 amd64 1.1.8-1.1 [32.2 kB] Get:192 http://deb.debian.org/debian/ jessie/main libopenmpi1.6 amd64 1.6.5-9.1+deb8u1 [1455 kB] Get:193 http://deb.debian.org/debian/ jessie/main libboost-mpi1.55.0 amd64 1.55.0+dfsg-3 [69.7 kB] Get:194 http://deb.debian.org/debian/ jessie/main libboost-program-options1.55.0 amd64 1.55.0+dfsg-3 [143 kB] Get:195 http://deb.debian.org/debian/ jessie/main libboost-random1.55.0 amd64 1.55.0+dfsg-3 [30.3 kB] Get:196 http://deb.debian.org/debian/ jessie/main libicu52 amd64 52.1-8+deb8u7 [6807 kB] Get:197 http://deb.debian.org/debian/ jessie/main libboost-regex1.55.0 amd64 1.55.0+dfsg-3 [293 kB] Get:198 http://deb.debian.org/debian/ jessie/main libboost-thread1.55.0 amd64 1.55.0+dfsg-3 [53.4 kB] Get:199 http://deb.debian.org/debian/ jessie/main libboost-timer1.55.0 amd64 1.55.0+dfsg-3 [32.5 kB] Get:200 http://deb.debian.org/debian/ jessie/main libcaca0 amd64 0.99.beta19-2 [346 kB] Get:201 http://deb.debian.org/debian/ jessie/main libcairo-gobject2 amd64 1.14.0-2.1+deb8u2 [304 kB] Get:202 http://deb.debian.org/debian/ jessie/main libogg0 amd64 1.3.2-1 [19.9 kB] Get:203 http://deb.debian.org/debian/ jessie/main libtdb1 amd64 1.3.6-0+deb8u1 [42.6 kB] Get:204 http://deb.debian.org/debian/ jessie/main libvorbis0a amd64 1.3.4-2+deb8u1 [92.5 kB] Get:205 http://deb.debian.org/debian/ jessie/main libvorbisfile3 amd64 1.3.4-2+deb8u1 [23.7 kB] Get:206 http://deb.debian.org/debian/ jessie/main libcanberra0 amd64 0.30-2.1 [36.8 kB] Get:207 http://deb.debian.org/debian/ jessie/main libdconf1 amd64 0.22.0-1 [35.2 kB] Get:208 http://deb.debian.org/debian/ jessie/main dconf-service amd64 0.22.0-1 [41.6 kB] Get:209 http://deb.debian.org/debian/ jessie/main dconf-gsettings-backend amd64 0.22.0-1 [33.9 kB] Get:210 http://deb.debian.org/debian/ jessie/main hicolor-icon-theme all 0.13-1 [8600 B] Get:211 http://deb.debian.org/debian/ jessie/main libwayland-client0 amd64 1.6.0-2 [23.4 kB] Get:212 http://deb.debian.org/debian/ jessie/main libwayland-cursor0 amd64 1.6.0-2 [12.5 kB] Get:213 http://deb.debian.org/debian/ jessie/main xkb-data all 2.12-1 [597 kB] Get:214 http://deb.debian.org/debian/ jessie/main libxkbcommon0 amd64 0.4.3-2 [115 kB] Get:215 http://deb.debian.org/debian/ jessie/main libgtk-3-bin amd64 3.14.5-1+deb8u1 [93.7 kB] Get:216 http://deb.debian.org/debian/ jessie/main libcroco3 amd64 0.6.8-3+b1 [135 kB] Get:217 http://deb.debian.org/debian/ jessie/main librsvg2-2 amd64 2.40.5-1+deb8u2 [249 kB] Get:218 http://deb.debian.org/debian/ jessie/main librsvg2-common amd64 2.40.5-1+deb8u2 [170 kB] Get:219 http://deb.debian.org/debian/ jessie/main adwaita-icon-theme all 3.14.0-2 [9978 kB] Get:220 http://deb.debian.org/debian/ jessie/main libgtk-3-common all 3.14.5-1+deb8u1 [3155 kB] Get:221 http://deb.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:222 http://deb.debian.org/debian/ jessie/main libcolord2 amd64 1.2.1-1+b2 [229 kB] Get:223 http://deb.debian.org/debian/ jessie/main libjson-glib-1.0-common all 1.0.2-1 [147 kB] Get:224 http://deb.debian.org/debian/ jessie/main libjson-glib-1.0-0 amd64 1.0.2-1 [158 kB] Get:225 http://deb.debian.org/debian/ jessie/main libproxy1 amd64 0.4.11-4+b2 [56.8 kB] Get:226 http://deb.debian.org/debian/ jessie/main glib-networking-common all 2.42.0-2 [52.1 kB] Get:227 http://deb.debian.org/debian/ jessie/main glib-networking-services amd64 2.42.0-2 [17.0 kB] Get:228 http://deb.debian.org/debian/ jessie/main gsettings-desktop-schemas all 3.14.1-1 [391 kB] Get:229 http://deb.debian.org/debian/ jessie/main glib-networking amd64 2.42.0-2 [51.9 kB] Get:230 http://deb.debian.org/debian/ jessie/main libsoup2.4-1 amd64 2.48.0-1+deb8u1 [259 kB] Get:231 http://deb.debian.org/debian/ jessie/main libsoup-gnome2.4-1 amd64 2.48.0-1+deb8u1 [57.4 kB] Get:232 http://deb.debian.org/debian/ jessie/main librest-0.7-0 amd64 0.7.92-3 [33.2 kB] Get:233 http://deb.debian.org/debian/ jessie/main libgtk-3-0 amd64 3.14.5-1+deb8u1 [2249 kB] Get:234 http://deb.debian.org/debian/ jessie/main libcanberra-gtk3-0 amd64 0.30-2.1 [14.9 kB] Get:235 http://deb.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:236 http://deb.debian.org/debian/ jessie/main libcdparanoia0 amd64 3.10.2+debian-11 [56.6 kB] Get:237 http://deb.debian.org/debian/ jessie/main libcfitsio2 amd64 3.370-2+deb8u1 [506 kB] Get:238 http://deb.debian.org/debian/ jessie/main libcilkrts5 amd64 4.9.2-10+deb8u1 [40.1 kB] Get:239 http://deb.debian.org/debian/ jessie/main libisl10 amd64 0.12.2-2 [440 kB] Get:240 http://deb.debian.org/debian/ jessie/main libcloog-isl4 amd64 0.18.2-1+b2 [61.8 kB] Get:241 http://deb.debian.org/debian/ jessie/main libcolamd2.8.0 amd64 1:4.2.1-3 [20.4 kB] Get:242 http://deb.debian.org/debian/ jessie/main libgudev-1.0-0 amd64 215-17+deb8u7 [42.6 kB] Get:243 http://deb.debian.org/debian/ jessie/main libusb-1.0-0 amd64 2:1.0.19-1 [48.1 kB] Get:244 http://deb.debian.org/debian/ jessie/main libgusb2 amd64 0.1.6-5 [17.7 kB] Get:245 http://deb.debian.org/debian/ jessie/main libcolorhug2 amd64 1.2.1-1+b2 [154 kB] Get:246 http://deb.debian.org/debian/ jessie/main libcupsimage2 amd64 1.7.5-11+deb8u2 [117 kB] Get:247 http://deb.debian.org/debian/ jessie/main libcupsfilters1 amd64 1.0.61-5+deb8u3 [106 kB] Get:248 http://deb.debian.org/debian/ jessie/main librtmp1 amd64 2.4+20150115.gita107cef-1+deb8u1 [60.0 kB] Get:249 http://deb.debian.org/debian/ jessie/main libssh2-1 amd64 1.4.3-4.1+deb8u1 [125 kB] Get:250 http://deb.debian.org/debian/ jessie/main libcurl3 amd64 7.38.0-4+deb8u11 [260 kB] Get:251 http://deb.debian.org/debian/ jessie/main libcurl3-gnutls amd64 7.38.0-4+deb8u11 [253 kB] Get:252 http://deb.debian.org/debian/ jessie/main libdirectfb-1.2-9 amd64 1.2.10.0-5.1 [1040 kB] Get:253 http://deb.debian.org/debian/ jessie/main libdjvulibre-text all 3.5.25.4-4 [59.8 kB] Get:254 http://deb.debian.org/debian/ jessie/main libdjvulibre21 amd64 3.5.25.4-4+b1 [578 kB] Get:255 http://deb.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:256 http://deb.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:257 http://deb.debian.org/debian/ jessie/main libpciaccess0 amd64 0.13.2-3+b1 [47.6 kB] Get:258 http://deb.debian.org/debian/ jessie/main libdrm-intel1 amd64 2.4.58-2 [64.9 kB] Get:259 http://deb.debian.org/debian/ jessie/main libdrm-nouveau2 amd64 2.4.58-2 [21.6 kB] Get:260 http://deb.debian.org/debian/ jessie/main libdrm-radeon1 amd64 2.4.58-2 [31.1 kB] Get:261 http://deb.debian.org/debian/ jessie/main libelf1 amd64 0.159-4.2 [160 kB] Get:262 http://deb.debian.org/debian/ jessie/main libelfg0 amd64 0.8.13-5 [51.6 kB] Get:263 http://deb.debian.org/debian/ jessie/main libexif12 amd64 0.6.21-2 [324 kB] Get:264 http://deb.debian.org/debian/ jessie/main libfann2 amd64 2.1.0~beta+dfsg-1 [67.2 kB] Get:265 http://deb.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:266 http://deb.debian.org/debian/ jessie/main libfftw3-double3 amd64 3.3.4-2 [722 kB] Get:267 http://deb.debian.org/debian/ jessie/main libfftw3-single3 amd64 3.3.4-2 [754 kB] Get:268 http://deb.debian.org/debian/ jessie/main libflac8 amd64 1.3.0-3 [89.3 kB] Get:269 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:270 http://deb.debian.org/debian/ jessie/main libfltk1.3 amd64 1.3.2-6+b1 [644 kB] Get:271 http://deb.debian.org/debian/ jessie/main libfltk-images1.3 amd64 1.3.2-6+b1 [96.7 kB] Get:272 http://deb.debian.org/debian/ jessie/main libfontenc1 amd64 1:1.1.2-1+b2 [23.9 kB] Get:273 http://deb.debian.org/debian/ jessie/main libglu1-mesa amd64 9.0.0-2 [163 kB] Get:274 http://deb.debian.org/debian/ jessie/main libftgl2 amd64 2.1.3~rc5-4+nmu1 [93.2 kB] Get:275 http://deb.debian.org/debian/ jessie/main libunistring0 amd64 0.9.3-5.2+b1 [288 kB] Get:276 http://deb.debian.org/debian/ jessie/main libgettextpo0 amd64 0.19.3-2 [138 kB] Get:277 http://deb.debian.org/debian/ jessie/main libgflags2 amd64 2.0-2.1 [72.8 kB] Get:278 http://deb.debian.org/debian/ jessie/main libgif4 amd64 4.1.6-11+deb8u1 [40.0 kB] Get:279 http://deb.debian.org/debian/ jessie/main libllvm3.5 amd64 1:3.5-10 [7607 kB] Get:280 http://deb.debian.org/debian/ jessie/main libgl1-mesa-dri amd64 10.3.2-1+deb8u1 [3384 kB] Get:281 http://deb.debian.org/debian/ jessie/main libglade2-0 amd64 1:2.6.4-2 [81.8 kB] Get:282 http://deb.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:283 http://deb.debian.org/debian/ jessie/main libglew1.10 amd64 1.10.0-3 [139 kB] Get:284 http://deb.debian.org/debian/ jessie/main libglpk36 amd64 4.55-1 [424 kB] Get:285 http://deb.debian.org/debian/ jessie/main libgmpxx4ldbl amd64 2:6.0.0+dfsg-6 [22.1 kB] Get:286 http://deb.debian.org/debian/ jessie/main libunwind8 amd64 1.1-3.2 [50.8 kB] Get:287 http://deb.debian.org/debian/ jessie/main libgoogle-glog0 amd64 0.3.3-2 [52.9 kB] Get:288 http://deb.debian.org/debian/ jessie/main libgphoto2-port10 amd64 2.5.4-1.1+b2 [146 kB] Get:289 http://deb.debian.org/debian/ jessie/main libgphoto2-6 amd64 2.5.4-1.1+b2 [823 kB] Get:290 http://deb.debian.org/debian/ jessie/main libgstreamer1.0-0 amd64 1.4.4-2+deb8u1 [1662 kB] Get:291 http://deb.debian.org/debian/ jessie/main liborc-0.4-0 amd64 1:0.4.22-1 [141 kB] Get:292 http://deb.debian.org/debian/ jessie/main iso-codes all 3.57-1 [2265 kB] Get:293 http://deb.debian.org/debian/ jessie/main libgstreamer-plugins-base1.0-0 amd64 1.4.4-2+deb8u1 [1298 kB] Get:294 http://deb.debian.org/debian/ jessie/main libharfbuzz-icu0 amd64 0.9.35-2 [360 kB] Get:295 http://deb.debian.org/debian/ jessie/main libhdf5-8 amd64 1.8.13+docs-15+deb8u1 [1061 kB] Get:296 http://deb.debian.org/debian/ jessie/main libieee1284-3 amd64 0.2.11-12 [28.9 kB] Get:297 http://deb.debian.org/debian/ jessie/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:298 http://deb.debian.org/debian/ jessie/main libilmbase6 amd64 1.0.1-6.1 [64.1 kB] Get:299 http://deb.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:300 http://deb.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:301 http://deb.debian.org/debian/ jessie/main libitm1 amd64 4.9.2-10+deb8u1 [29.3 kB] Get:302 http://deb.debian.org/debian/ jessie/main liblqr-1-0 amd64 0.4.2-2 [24.6 kB] Get:303 http://deb.debian.org/debian/ jessie/main liblsan0 amd64 4.9.2-10+deb8u1 [92.7 kB] Get:304 http://deb.debian.org/debian/ jessie/main libmagickcore-6.q16-2 amd64 8:6.8.9.9-5+deb8u12 [1696 kB] Get:305 http://deb.debian.org/debian/ jessie/main libmagickwand-6.q16-2 amd64 8:6.8.9.9-5+deb8u12 [409 kB] Get:306 http://deb.debian.org/debian/ jessie/main libmng1 amd64 1.0.10+dfsg-3.1+b3 [217 kB] Get:307 http://deb.debian.org/debian/ jessie/main libmotif-common all 2.3.4-6+deb8u1 [28.1 kB] Get:308 http://deb.debian.org/debian/ jessie/main libmpdec2 amd64 2.4.1-1 [85.7 kB] Get:309 http://deb.debian.org/debian/ jessie/main mysql-common all 5.5.60-0+deb8u1 [75.4 kB] Get:310 http://deb.debian.org/debian/ jessie/main libmysqlclient18 amd64 5.5.60-0+deb8u1 [671 kB] Get:311 http://deb.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:312 http://deb.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:313 http://deb.debian.org/debian/ jessie/main libnotify4 amd64 0.7.6-2 [28.3 kB] Get:314 http://deb.debian.org/debian/ jessie/main libnspr4 amd64 2:4.12-1+debu8u1 [117 kB] Get:315 http://deb.debian.org/debian/ jessie/main libnss3 amd64 2:3.26-1+debu8u3 [1159 kB] Get:316 http://deb.debian.org/debian/ jessie/main libobjc4 amd64 4.9.2-10+deb8u1 [113 kB] Get:317 http://deb.debian.org/debian/ jessie/main libopenexr6 amd64 1.6.1-8 [183 kB] Get:318 http://deb.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:319 http://deb.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:320 http://deb.debian.org/debian/ jessie/main libpam-systemd amd64 215-17+deb8u7 [126 kB] Get:321 http://deb.debian.org/debian/ jessie/main libpangoxft-1.0-0 amd64 1.36.8-3 [195 kB] Get:322 http://deb.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:323 http://deb.debian.org/debian/ jessie/main libpcrecpp0 amd64 2:8.35-3.3+deb8u4 [142 kB] Get:324 http://deb.debian.org/debian/ jessie/main libpcsclite1 amd64 1.8.13-1+deb8u1 [56.2 kB] Get:325 http://deb.debian.org/debian/ jessie/main libpolkit-gobject-1-0 amd64 0.105-15~deb8u2 [43.1 kB] Get:326 http://deb.debian.org/debian/ jessie/main libpolkit-agent-1-0 amd64 0.105-15~deb8u2 [24.0 kB] Get:327 http://deb.debian.org/debian/ jessie/main libpolkit-backend-1-0 amd64 0.105-15~deb8u2 [45.2 kB] Get:328 http://deb.debian.org/debian/ jessie/main libopenjpeg5 amd64 1:1.5.2-3 [111 kB] Get:329 http://deb.debian.org/debian/ jessie/main libpoppler46 amd64 0.26.5-2+deb8u4 [1211 kB] Get:330 http://deb.debian.org/debian/ jessie/main qtcore4-l10n all 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [654 kB] Get:331 http://deb.debian.org/debian/ jessie/main libqtcore4 amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [1606 kB] Get:332 http://deb.debian.org/debian/ jessie/main libqt4-xml amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [136 kB] Get:333 http://deb.debian.org/debian/ jessie/main libqtgui4 amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [4189 kB] Get:334 http://deb.debian.org/debian/ jessie/main libpoppler-qt4-4 amd64 0.26.5-2+deb8u4 [127 kB] Get:335 http://deb.debian.org/debian/ jessie/main libpq5 amd64 9.4.18-0+deb8u1 [128 kB] Get:336 http://deb.debian.org/debian/ jessie/main libpth20 amd64 2.0.7-20 [78.1 kB] Get:337 http://deb.debian.org/debian/ jessie/main libvorbisenc2 amd64 1.3.4-2+deb8u1 [77.8 kB] Get:338 http://deb.debian.org/debian/ jessie/main libsndfile1 amd64 1.0.25-9.1+deb8u1 [215 kB] Get:339 http://deb.debian.org/debian/ jessie/main libxtst6 amd64 2:1.2.2-1+deb8u1 [27.2 kB] Get:340 http://deb.debian.org/debian/ jessie/main libpulse0 amd64 5.0-13 [255 kB] Get:341 http://deb.debian.org/debian/ jessie/main libpython2.7 amd64 2.7.9-2+deb8u1 [1081 kB] Get:342 http://deb.debian.org/debian/ jessie/main libc-dev-bin amd64 2.19-18+deb8u10 [238 kB] Get:343 http://deb.debian.org/debian/ jessie/main linux-libc-dev amd64 3.16.56-1+deb8u1 [1096 kB] Get:344 http://deb.debian.org/debian/ jessie/main libc6-dev amd64 2.19-18+deb8u10 [2003 kB] Get:345 http://deb.debian.org/debian/ jessie/main libexpat1-dev amd64 2.1.0-6+deb8u4 [126 kB] Get:346 http://deb.debian.org/debian/ jessie/main libpython2.7-dev amd64 2.7.9-2+deb8u1 [18.6 MB] Get:347 http://deb.debian.org/debian/ jessie/main libpython3.4-minimal amd64 3.4.2-1 [492 kB] Get:348 http://deb.debian.org/debian/ jessie/main libpython3.4-stdlib amd64 3.4.2-1 [2088 kB] Get:349 http://deb.debian.org/debian/ jessie/main libqtdbus4 amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [223 kB] Get:350 http://deb.debian.org/debian/ jessie/main libqt4-network amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [605 kB] Get:351 http://deb.debian.org/debian/ jessie/main libqt4-opengl amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [343 kB] Get:352 http://deb.debian.org/debian/ jessie/main libqt4-sql amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [139 kB] Get:353 http://deb.debian.org/debian/ jessie/main libqt4-sql-mysql amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [69.7 kB] Get:354 http://deb.debian.org/debian/ jessie/main libqt4-svg amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [177 kB] Get:355 http://deb.debian.org/debian/ jessie/main libqt4-test amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [101 kB] Get:356 http://deb.debian.org/debian/ jessie/main libqt4-xmlpatterns amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [1099 kB] Get:357 http://deb.debian.org/debian/ jessie/main libqtwebkit4 amd64 2.3.4.dfsg-3 [9054 kB] Get:358 http://deb.debian.org/debian/ jessie/main librelion-1.3-1 amd64 1.3+dfsg-2 [557 kB] Get:359 http://deb.debian.org/debian/ jessie/main libsane-common all 1.0.24-8+deb8u2 [1000 kB] Get:360 http://deb.debian.org/debian/ jessie/main libv4lconvert0 amd64 1.6.0-2 [108 kB] Get:361 http://deb.debian.org/debian/ jessie/main libv4l-0 amd64 1.6.0-2 [71.8 kB] Get:362 http://deb.debian.org/debian/ jessie/main libsane amd64 1.0.24-8+deb8u2 [2039 kB] Get:363 http://deb.debian.org/debian/ jessie/main libsctp1 amd64 1.0.16+dfsg-2 [27.6 kB] Get:364 http://deb.debian.org/debian/ jessie/main libsdl1.2debian amd64 1.2.15-10+b1 [189 kB] Get:365 http://deb.debian.org/debian/ jessie/main libtcl8.5 amd64 8.5.17-1 [737 kB] Get:366 http://deb.debian.org/debian/ jessie/main libtcl8.6 amd64 8.6.2+dfsg-2 [978 kB] Get:367 http://deb.debian.org/debian/ jessie/main libtheora0 amd64 1.1.1+dfsg.1-6 [171 kB] Get:368 http://deb.debian.org/debian/ jessie/main libtinyxml2.6.2 amd64 2.6.2-2 [43.0 kB] Get:369 http://deb.debian.org/debian/ jessie/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:370 http://deb.debian.org/debian/ jessie/main libtk8.5 amd64 8.5.17-1 [749 kB] Get:371 http://deb.debian.org/debian/ jessie/main libtk8.6 amd64 8.6.2-1 [771 kB] Get:372 http://deb.debian.org/debian/ jessie/main libtre5 amd64 0.8.0-4+deb8u1 [57.8 kB] Get:373 http://deb.debian.org/debian/ jessie/main libtsan0 amd64 4.9.2-10+deb8u1 [212 kB] Get:374 http://deb.debian.org/debian/ jessie/main libubsan0 amd64 4.9.2-10+deb8u1 [82.4 kB] Get:375 http://deb.debian.org/debian/ jessie/main libxm4 amd64 2.3.4-6+deb8u1 [1028 kB] Get:376 http://deb.debian.org/debian/ jessie/main libvibrant6b amd64 6.1.20120620-8 [1273 kB] Get:377 http://deb.debian.org/debian/ jessie/main libvisual-0.4-0 amd64 0.4.0-6 [121 kB] Get:378 http://deb.debian.org/debian/ jessie/main libwmf0.2-7 amd64 0.2.8.4-10.3+deb8u2 [163 kB] Get:379 http://deb.debian.org/debian/ jessie/main libwxbase3.0-0 amd64 3.0.2-1+b1 [1103 kB] Get:380 http://deb.debian.org/debian/ jessie/main libwxgtk3.0-0 amd64 3.0.2-1+b1 [4608 kB] Get:381 http://deb.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:382 http://deb.debian.org/debian/ jessie/main libxcb-shape0 amd64 1.10-3+b1 [11.6 kB] Get:383 http://deb.debian.org/debian/ jessie/main libxmuu1 amd64 2:1.1.2-1 [23.3 kB] Get:384 http://deb.debian.org/debian/ jessie/main libxslt1.1 amd64 1.1.28-2+deb8u3 [232 kB] Get:385 http://deb.debian.org/debian/ jessie/main libxv1 amd64 2:1.0.10-1+deb8u1 [23.9 kB] Get:386 http://deb.debian.org/debian/ jessie/main libxxf86dga1 amd64 2:1.1.4-1+b1 [22.3 kB] Get:387 http://deb.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:388 http://deb.debian.org/debian/ jessie/main libzzip-0-13 amd64 0.13.62-3+deb8u1 [55.6 kB] Get:389 http://deb.debian.org/debian/ jessie/main lua-filesystem amd64 1.6.2-3 [10.1 kB] Get:390 http://deb.debian.org/debian/ jessie/main lua-lpeg amd64 0.12-1 [26.7 kB] Get:391 http://deb.debian.org/debian/ jessie/main lua-md5 amd64 1.2+git+1+8d87fee-1 [13.1 kB] Get:392 http://deb.debian.org/debian/ jessie/main metastudent-data all 1.0.1-2 [138 MB] Get:393 http://deb.debian.org/debian/ jessie/main metastudent-data-2 all 1.0.0-1 [227 kB] Get:394 http://deb.debian.org/debian/ jessie/main poppler-data all 0.4.7-1 [1491 kB] Get:395 http://deb.debian.org/debian/ jessie/main python3.4-minimal amd64 3.4.2-1 [1646 kB] Get:396 http://deb.debian.org/debian/ jessie/main sgml-base all 1.26+nmu4 [14.6 kB] Get:397 http://deb.debian.org/debian/ jessie/main libcbf0 amd64 0.9.2.2-1 [168 kB] Get:398 http://deb.debian.org/debian/ jessie/main libcvector2 amd64 1.0.3.1-1.1 [5930 B] Get:399 http://deb.debian.org/debian/ jessie/main libcneartree5 amd64 3.1.1-2.1 [24.1 kB] Get:400 http://deb.debian.org/debian/ jessie/main libcqrlib2 amd64 1.1.2-2.1 [13.6 kB] Get:401 http://deb.debian.org/debian/ jessie/main libflite1 amd64 1.4-release-12 [13.1 MB] Get:402 http://deb.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:403 http://deb.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:404 http://deb.debian.org/debian/ jessie/main libatlas3-base amd64 3.10.2-7 [2725 kB] Get:405 http://deb.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:406 http://deb.debian.org/debian/ jessie/main libfreecontact0 amd64 1.0.21-3+b1 [85.9 kB] Get:407 http://deb.debian.org/debian/ jessie/main libhmsbeagle1 amd64 2.1.2-1 [72.4 kB] Get:408 http://deb.debian.org/debian/ jessie/main libmpc3 amd64 1.0.2-1 [39.3 kB] Get:409 http://deb.debian.org/debian/ jessie/main libpangox-1.0-0 amd64 0.0.2-5 [42.0 kB] Get:410 http://deb.debian.org/debian/ jessie/main libtxc-dxtn-s2tc0 amd64 0~git20131104-1.1 [51.6 kB] Get:411 http://deb.debian.org/debian/ jessie/main libwebp5 amd64 0.4.1-1.2+b2 [201 kB] Get:412 http://deb.debian.org/debian/ jessie/main libwebpdemux1 amd64 0.4.1-1.2+b2 [50.7 kB] Get:413 http://deb.debian.org/debian/ jessie/main libwebpmux1 amd64 0.4.1-1.2+b2 [57.2 kB] Get:414 http://deb.debian.org/debian/ jessie/main ocl-icd-libopencl1 amd64 2.2.3-1+deb8u1 [33.6 kB] Get:415 http://deb.debian.org/debian/ jessie/main rate4site amd64 3.0.0-1 [304 kB] Get:416 http://deb.debian.org/debian/ jessie/main dmidecode amd64 2.12-3 [64.4 kB] Get:417 http://deb.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:418 http://deb.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:419 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:420 http://deb.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:421 http://deb.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:422 http://deb.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:423 http://deb.debian.org/debian/ jessie/main manpages all 3.74-1 [997 kB] Get:424 http://deb.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:425 http://deb.debian.org/debian/ jessie/main bc amd64 1.06.95-9 [103 kB] Get:426 http://deb.debian.org/debian/ jessie/main bzip2 amd64 1.0.6-7+b3 [46.9 kB] Get:427 http://deb.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u4 [60.5 kB] Get:428 http://deb.debian.org/debian/ jessie/main gettext-base amd64 0.19.3-2 [121 kB] Get:429 http://deb.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:430 http://deb.debian.org/debian/ jessie/main openssh-client amd64 1:6.7p1-5+deb8u4 [693 kB] Get:431 http://deb.debian.org/debian/ jessie/main patch amd64 2.7.5-1+deb8u1 [109 kB] Get:432 http://deb.debian.org/debian/ jessie/main python-support all 1.0.15 [33.6 kB] Get:433 http://deb.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] Get:434 http://deb.debian.org/debian/ jessie/main mummer amd64 3.23~dfsg-2 [469 kB] Get:435 http://deb.debian.org/debian/ jessie/main abacas all 1.3.1-2 [23.9 kB] Get:436 http://deb.debian.org/debian/ jessie/main gnustep-common amd64 2.6.6-3 [119 kB] Get:437 http://deb.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:438 http://deb.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:439 http://deb.debian.org/debian/ jessie/main gnustep-base-common all 1.24.7-1 [244 kB] Get:440 http://deb.debian.org/debian/ jessie/main libgnustep-base1.24 amd64 1.24.7-1 [1254 kB] Get:441 http://deb.debian.org/debian/ jessie/main gnustep-base-runtime amd64 1.24.7-1 [189 kB] Get:442 http://deb.debian.org/debian/ jessie/main mknfonts.tool amd64 0.5-11+b4 [14.3 kB] Get:443 http://deb.debian.org/debian/ jessie/main fonts-freefont-ttf all 20120503-4 [4262 kB] Get:444 http://deb.debian.org/debian/ jessie/main gnustep-gui-common all 0.24.0-3 [764 kB] Get:445 http://deb.debian.org/debian/ jessie/main libao-common amd64 1.1.0-3 [11.1 kB] Get:446 http://deb.debian.org/debian/ jessie/main libao4 amd64 1.1.0-3 [36.7 kB] Get:447 http://deb.debian.org/debian/ jessie/main libgnustep-gui0.24 amd64 0.24.0-3 [1372 kB] Get:448 http://deb.debian.org/debian/ jessie/main gnustep-gui-runtime amd64 0.24.0-3 [154 kB] Get:449 http://deb.debian.org/debian/ jessie/main gnustep-back-common amd64 0.24.0-4 [103 kB] Get:450 http://deb.debian.org/debian/ jessie/main gnustep-back0.24-cairo amd64 0.24.0-4 [244 kB] Get:451 http://deb.debian.org/debian/ jessie/main gnustep-back0.24 all 0.24.0-4 [79.4 kB] Get:452 http://deb.debian.org/debian/ jessie/main libgsl0ldbl amd64 1.16+dfsg-2 [819 kB] Get:453 http://deb.debian.org/debian/ jessie/main adun.app amd64 0.81-6+b1 [1203 kB] Get:454 http://deb.debian.org/debian/ jessie/main aevol amd64 4.4-1 [403 kB] Get:455 http://deb.debian.org/debian/ jessie/main ca-certificates-java all 20140324 [13.7 kB] Get:456 http://deb.debian.org/debian/ jessie/main tzdata-java all 2018e-0+deb8u1 [82.8 kB] Get:457 http://deb.debian.org/debian/ jessie/main java-common all 0.52 [136 kB] Get:458 http://deb.debian.org/debian/ jessie/main openjdk-7-jre-headless amd64 7u181-2.6.14-1~deb8u1 [39.9 MB] Get:459 http://deb.debian.org/debian/ jessie/main default-jre-headless amd64 2:1.7-52 [9072 B] Get:460 http://deb.debian.org/debian/ jessie/main openjdk-7-jre amd64 7u181-2.6.14-1~deb8u1 [176 kB] Get:461 http://deb.debian.org/debian/ jessie/main default-jre amd64 2:1.7-52 [968 B] Get:462 http://deb.debian.org/debian/ jessie/main libbytecode-java all 0.92.svn.20090106-1.1 [87.7 kB] Get:463 http://deb.debian.org/debian/ jessie/main libcommons-pool-java all 1.6-2 [105 kB] Get:464 http://deb.debian.org/debian/ jessie/main libcommons-collections3-java all 3.2.1-7+deb8u1 [597 kB] Get:465 http://deb.debian.org/debian/ jessie/main libcommons-dbcp-java all 1.4-5 [155 kB] Get:466 http://deb.debian.org/debian/ jessie/main libservlet2.5-java all 6.0.45+dfsg-1~deb8u1 [220 kB] Get:467 http://deb.debian.org/debian/ jessie/main libhsqldb-java all 2.2.9+dfsg-4 [1405 kB] Get:468 http://deb.debian.org/debian/ jessie/main libbiojava1.7-java all 1:1.7.1-5 [3160 kB] Get:469 http://deb.debian.org/debian/ jessie/main libbiojava-java all 1:1.7.1-5 [48.4 kB] Get:470 http://deb.debian.org/debian/ jessie/main libapache-pom-java all 10-2 [3870 B] Get:471 http://deb.debian.org/debian/ jessie/main libcommons-parent-java all 22-2 [6786 B] Get:472 http://deb.debian.org/debian/ jessie/main libcommons-lang-java all 2.6-4 [269 kB] Get:473 http://deb.debian.org/debian/ jessie/main libcommons-cli-java all 1.2-3 [39.2 kB] Get:474 http://deb.debian.org/debian/ jessie/main alien-hunter all 1.7-3 [27.9 kB] Get:475 http://deb.debian.org/debian/ jessie/main libtamuanova-0.2 amd64 0.2-3 [8214 B] Get:476 http://deb.debian.org/debian/ jessie/main libmath-tamuanova-perl amd64 1.0.2-2+b2 [14.3 kB] Get:477 http://deb.debian.org/debian/ jessie/main altree amd64 1.3.1-2+b1 [341 kB] Get:478 http://deb.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:479 http://deb.debian.org/debian/ jessie/main libelk0 amd64 3.99.8-2.1 [163 kB] Get:480 http://deb.debian.org/debian/ jessie/main libprotobuf9 amd64 2.6.1-1 [361 kB] Get:481 http://deb.debian.org/debian/ jessie/main libanfo0 amd64 0.98-4+b1 [289 kB] Get:482 http://deb.debian.org/debian/ jessie/main anfo amd64 0.98-4+b1 [119 kB] Get:483 http://deb.debian.org/debian/ jessie/main ant all 1.9.4-3 [1888 kB] Get:484 http://deb.debian.org/debian/ jessie/main ant-optional all 1.9.4-3 [316 kB] Get:485 http://deb.debian.org/debian/ jessie/main libmaloc1 amd64 0.2-3 [49.0 kB] Get:486 http://deb.debian.org/debian/ jessie/main apbs amd64 1.4-1 [211 kB] Get:487 http://deb.debian.org/debian/ jessie/main aragorn amd64 1.2.36-4 [96.8 kB] Get:488 http://deb.debian.org/debian/ jessie/main python-decorator all 3.4.0-2 [22.3 kB] Get:489 http://deb.debian.org/debian/ jessie/main python-numpy amd64 1:1.8.2-2 [1630 kB] Get:490 http://deb.debian.org/debian/ jessie/main python-scipy amd64 0.14.0-2 [8144 kB] Get:491 http://deb.debian.org/debian/ jessie/main python-htseq amd64 0.5.4p3-2 [168 kB] Get:492 http://deb.debian.org/debian/ jessie/main python-six all 1.8.0-1 [12.6 kB] Get:493 http://deb.debian.org/debian/ jessie/main python-dateutil all 2.2-2 [51.3 kB] Get:494 http://deb.debian.org/debian/ jessie/main fonts-lyx all 2.1.2-2 [176 kB] Get:495 http://deb.debian.org/debian/ jessie/main python-matplotlib-data all 1.4.2-3.1 [3041 kB] Get:496 http://deb.debian.org/debian/ jessie/main python-pyparsing all 2.0.3+dfsg1-1 [64.0 kB] Get:497 http://deb.debian.org/debian/ jessie/main python-tz all 2012c+dfsg-0.1 [31.9 kB] Get:498 http://deb.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:499 http://deb.debian.org/debian/ jessie/main libjs-jquery-ui all 1.10.1+dfsg-1 [499 kB] Get:500 http://deb.debian.org/debian/ jessie/main python-mock all 1.0.1-3 [33.2 kB] Get:501 http://deb.debian.org/debian/ jessie/main python-pkg-resources all 5.5.1-1 [64.4 kB] Get:502 http://deb.debian.org/debian/ jessie/main python-nose all 1.3.4-1 [134 kB] Get:503 http://deb.debian.org/debian/ jessie/main python-matplotlib amd64 1.4.2-3.1 [3780 kB] Get:504 http://deb.debian.org/debian/ jessie/main arden amd64 1.0-1 [90.5 kB] Get:505 http://deb.debian.org/debian/ jessie/main emacsen-common all 2.0.8 [21.2 kB] Get:506 http://deb.debian.org/debian/ jessie/main dictionaries-common all 1.23.17 [249 kB] Get:507 http://deb.debian.org/debian/ jessie/main aspell amd64 0.60.7~20110707-1.3 [230 kB] Get:508 http://deb.debian.org/debian/ jessie/main aspell-en all 7.1-0-1.1 [266 kB] Get:509 http://deb.debian.org/debian/ jessie/main at-spi2-core amd64 2.14.0-1 [46.6 kB] Get:510 http://deb.debian.org/debian/ jessie/main autodock amd64 4.2.6-2 [158 kB] Get:511 http://deb.debian.org/debian/ jessie/main autogrid amd64 4.2.6-2 [45.8 kB] Get:512 http://deb.debian.org/debian/ jessie/main autopoint all 0.19.3-2 [413 kB] Get:513 http://deb.debian.org/debian/ jessie/main autotools-dev all 20140911.1 [70.5 kB] Get:514 http://deb.debian.org/debian/ jessie/main libball1.4-data all 1.4.2+20140406-1 [30.3 MB] Get:515 http://deb.debian.org/debian/ jessie/main libball1.4 amd64 1.4.2+20140406-1+b2 [2958 kB] Get:516 http://deb.debian.org/debian/ jessie/main libballview1.4 amd64 1.4.2+20140406-1+b2 [1266 kB] Get:517 http://deb.debian.org/debian/ jessie/main python-sip amd64 4.16.4+dfsg-1 [85.7 kB] Get:518 http://deb.debian.org/debian/ jessie/main python-ball amd64 1.4.2+20140406-1+b2 [562 kB] Get:519 http://deb.debian.org/debian/ jessie/main python-ballview amd64 1.4.2+20140406-1+b2 [214 kB] Get:520 http://deb.debian.org/debian/ jessie/main ballview amd64 1.4.2+20140406-1+b2 [2510 kB] Get:521 http://deb.debian.org/debian/ jessie/main libbamtools2.3.0 amd64 2.3.0+dfsg-2 [164 kB] Get:522 http://deb.debian.org/debian/ jessie/main libjsoncpp0 amd64 0.6.0~rc2-3.1 [71.8 kB] Get:523 http://deb.debian.org/debian/ jessie/main bamtools amd64 2.3.0+dfsg-2 [182 kB] Get:524 http://deb.debian.org/debian/ jessie/main bedtools amd64 2.21.0-1 [608 kB] Get:525 http://deb.debian.org/debian/ jessie/main binfmt-support amd64 2.1.5-1 [58.2 kB] Get:526 http://deb.debian.org/debian/ jessie/main binutils amd64 2.25-5+deb8u1 [3496 kB] Get:527 http://deb.debian.org/debian/ jessie/main ant-contrib all 1.0~b3+svn177-6 [255 kB] Get:528 http://deb.debian.org/debian/ jessie/main libhamcrest-java all 1.3-5 [387 kB] Get:529 http://deb.debian.org/debian/ jessie/main junit4 all 4.11-3 [224 kB] Get:530 http://deb.debian.org/debian/ jessie/main libcommons-codec-java all 1.9-1 [215 kB] Get:531 http://deb.debian.org/debian/ jessie/main libcommons-logging-java all 1.2-1 [62.1 kB] Get:532 http://deb.debian.org/debian/ jessie/main libcommons-httpclient-java all 3.1-11+deb8u1 [298 kB] Get:533 http://deb.debian.org/debian/ jessie/main libcommons-net2-java all 2.2-2 [193 kB] Get:534 http://deb.debian.org/debian/ jessie/main libmail-java all 1.5.2-3 [601 kB] Get:535 http://deb.debian.org/debian/ jessie/main libjcommon-java all 1.0.16-4 [455 kB] Get:536 http://deb.debian.org/debian/ jessie/main libjaxen-java all 1.1.6-1 [209 kB] Get:537 http://deb.debian.org/debian/ jessie/main libjdom1-java all 1.1.3-1 [150 kB] Get:538 http://deb.debian.org/debian/ jessie/main libwsdl4j-java all 1.6.3-1 [177 kB] Get:539 http://deb.debian.org/debian/ jessie/main libcommons-discovery-java all 0.5-3 [136 kB] Get:540 http://deb.debian.org/debian/ jessie/main libaxis-java all 1.4-22 [1495 kB] Get:541 http://deb.debian.org/debian/ jessie/main libjava-xmlbuilder-java all 0.4-2 [20.2 kB] Get:542 http://deb.debian.org/debian/ jessie/main libjets3t-java all 0.8.1+dfsg-1 [479 kB] Get:543 http://deb.debian.org/debian/ jessie/main libjgoodies-common-java all 1.4.0-2 [32.4 kB] Get:544 http://deb.debian.org/debian/ jessie/main libjgoodies-forms-java all 1.6.0-4 [126 kB] Get:545 http://deb.debian.org/debian/ jessie/main libjzlib-java all 1.1.3-1 [69.9 kB] Get:546 http://deb.debian.org/debian/ jessie/main libjsch-java all 0.1.51-1 [268 kB] Get:547 http://deb.debian.org/debian/ jessie/main liblog4j1.2-java all 1.2.17-5 [386 kB] Get:548 http://deb.debian.org/debian/ jessie/main libmysql-java all 5.1.42-1~deb8u1 [1037 kB] Get:549 http://deb.debian.org/debian/ jessie/main liboro-java all 2.0.8a-9 [70.2 kB] Get:550 http://deb.debian.org/debian/ jessie/main libregexp-java all 1.5-3 [35.5 kB] Get:551 http://deb.debian.org/debian/ jessie/main libisorelax-java all 20041111-8 [63.3 kB] Get:552 http://deb.debian.org/debian/ jessie/main librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] Get:553 http://deb.debian.org/debian/ jessie/main libxml-commons-resolver1.1-java all 1.2-7 [91.9 kB] Get:554 http://deb.debian.org/debian/ jessie/main libxml-commons-external-java all 1.4.01-2 [245 kB] Get:555 http://deb.debian.org/debian/ jessie/main libxerces2-java all 2.11.0-7 [1365 kB] Get:556 http://deb.debian.org/debian/ jessie/main libmsv-java all 2009.1+dfsg1-4 [788 kB] Get:557 http://deb.debian.org/debian/ jessie/main libxpp2-java all 2.1.10-7 [147 kB] Get:558 http://deb.debian.org/debian/ jessie/main libxpp3-java all 1.1.4c-2 [349 kB] Get:559 http://deb.debian.org/debian/ jessie/main libdom4j-java all 1.6.1+dfsg.3-2 [353 kB] Get:560 http://deb.debian.org/debian/ jessie/main libxom-java all 1.2.10-1 [170 kB] Get:561 http://deb.debian.org/debian/ jessie/main libsaxonb-java all 9.1.0.8+dfsg-1 [1871 kB] Get:562 http://deb.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:563 http://deb.debian.org/debian/ jessie/main libdbd-mysql-perl amd64 4.028-2+deb8u2 [119 kB] Get:564 http://deb.debian.org/debian/ jessie/main libterm-readkey-perl amd64 2.32-1+b1 [28.0 kB] Get:565 http://deb.debian.org/debian/ jessie/main mysql-client-5.5 amd64 5.5.60-0+deb8u1 [1657 kB] Get:566 http://deb.debian.org/debian/ jessie/main mysql-client all 5.5.60-0+deb8u1 [73.6 kB] Get:567 http://deb.debian.org/debian/ jessie/main biomaj all 1.2.3-4 [4279 kB] Get:568 http://deb.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:569 http://deb.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:570 http://deb.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:571 http://deb.debian.org/debian/ jessie/main libbio-perl-run-perl all 1.6.9-2 [753 kB] Get:572 http://deb.debian.org/debian/ jessie/main bioperl-run all 1.6.9-2 [44.0 kB] Get:573 http://deb.debian.org/debian/ jessie/main biosquid amd64 1.9g+cvs20050121-4 [183 kB] Get:574 http://deb.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:575 http://deb.debian.org/debian/ jessie/main menu amd64 2.1.47 [381 kB] Get:576 http://deb.debian.org/debian/ jessie/main blends-common all 0.6.92.2 [22.3 kB] Get:577 http://deb.debian.org/debian/ jessie/main tk8.6-blt2.5 amd64 2.5.3+dfsg-1 [586 kB] Get:578 http://deb.debian.org/debian/ jessie/main blt amd64 2.5.3+dfsg-1 [14.3 kB] Get:579 http://deb.debian.org/debian/ jessie/main boxshade amd64 3.3.1-8 [52.5 kB] Get:580 http://deb.debian.org/debian/ jessie/main cpp-4.9 amd64 4.9.2-10+deb8u1 [5002 kB] Get:581 http://deb.debian.org/debian/ jessie/main cpp amd64 4:4.9.2-2 [17.3 kB] Get:582 http://deb.debian.org/debian/ jessie/main libgcc-4.9-dev amd64 4.9.2-10+deb8u1 [2066 kB] Get:583 http://deb.debian.org/debian/ jessie/main gcc-4.9 amd64 4.9.2-10+deb8u1 [5184 kB] Get:584 http://deb.debian.org/debian/ jessie/main gcc amd64 4:4.9.2-2 [5136 B] Get:585 http://deb.debian.org/debian/ jessie/main libstdc++-4.9-dev amd64 4.9.2-10+deb8u1 [1120 kB] Get:586 http://deb.debian.org/debian/ jessie/main g++-4.9 amd64 4.9.2-10+deb8u1 [17.3 MB] Get:587 http://deb.debian.org/debian/ jessie/main g++ amd64 4:4.9.2-2 [1530 B] Get:588 http://deb.debian.org/debian/ jessie/main make amd64 4.0-8.1 [349 kB] Get:589 http://deb.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:590 http://deb.debian.org/debian/ jessie/main libdpkg-perl all 1.17.27 [1075 kB] Get:591 http://deb.debian.org/debian/ jessie/main dpkg-dev all 1.17.27 [1548 kB] Get:592 http://deb.debian.org/debian/ jessie/main build-essential amd64 11.7 [7114 B] Get:593 http://deb.debian.org/debian/ jessie/main bwa amd64 0.7.10-1 [169 kB] Get:594 http://deb.debian.org/debian/ jessie/main bzip2-doc all 1.0.6-7 [307 kB] Get:595 http://deb.debian.org/debian/ jessie/main libcassie1 amd64 1.0.1+dfsg-3+b1 [36.5 kB] Get:596 http://deb.debian.org/debian/ jessie/main cassiopee amd64 1.0.1+dfsg-3+b1 [12.3 kB] Get:597 http://deb.debian.org/debian/ jessie/main cd-hit amd64 4.6.1-2012-08-27-2 [417 kB] Get:598 http://deb.debian.org/debian/ jessie/main cdbfasta amd64 0.99-20100722-1 [82.4 kB] Get:599 http://deb.debian.org/debian/ jessie/main cdbs all 0.4.130+deb8u1 [77.1 kB] Get:600 http://deb.debian.org/debian/ jessie/main microbiomeutil-data all 20101212+dfsg-1 [2167 kB] Get:601 http://deb.debian.org/debian/ jessie/main chimeraslayer all 20101212+dfsg-1 [33.1 kB] Get:602 http://deb.debian.org/debian/ jessie/main clearcut amd64 1.0.9-1 [282 kB] Get:603 http://deb.debian.org/debian/ jessie/main clonalframe amd64 1.2-3 [55.0 kB] Get:604 http://deb.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:605 http://deb.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:606 http://deb.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:607 http://deb.debian.org/debian/ jessie/main clustalx amd64 2.1+lgpl-3 [433 kB] Get:608 http://deb.debian.org/debian/ jessie/main policykit-1 amd64 0.105-15~deb8u2 [62.2 kB] Get:609 http://deb.debian.org/debian/ jessie/main colord-data all 1.2.1-1 [1213 kB] Get:610 http://deb.debian.org/debian/ jessie/main colord amd64 1.2.1-1+b2 [297 kB] Get:611 http://deb.debian.org/debian/ jessie/main curl amd64 7.38.0-4+deb8u11 [201 kB] Get:612 http://deb.debian.org/debian/ jessie/main cython amd64 0.21.1-1 [1518 kB] Get:613 http://deb.debian.org/debian/ jessie/main gettext amd64 0.19.3-2 [1240 kB] Get:614 http://deb.debian.org/debian/ jessie/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:615 http://deb.debian.org/debian/ jessie/main po-debconf all 1.0.16+nmu3 [220 kB] Get:616 http://deb.debian.org/debian/ jessie/main debhelper all 9.20150101+deb8u2 [817 kB] Get:617 http://deb.debian.org/debian/ jessie/main python3.4 amd64 3.4.2-1 [204 kB] Get:618 http://deb.debian.org/debian/ jessie/main python3-minimal amd64 3.4.2-2 [34.7 kB] Get:619 http://deb.debian.org/debian/ jessie/main libpython3-stdlib amd64 3.4.2-2 [18.1 kB] Get:620 http://deb.debian.org/debian/ jessie/main python3 amd64 3.4.2-2 [21.2 kB] Get:621 http://deb.debian.org/debian/ jessie/main dh-python all 1.20141111-2 [66.4 kB] Get:622 http://deb.debian.org/debian/ jessie/main dialign amd64 2.2.1-7 [135 kB] Get:623 http://deb.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:624 http://deb.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:625 http://deb.debian.org/debian/ jessie/main discosnp amd64 1.2.5-1 [140 kB] Get:626 http://deb.debian.org/debian/ jessie/main dnaclust amd64 3-2+b1 [86.2 kB] Get:627 http://deb.debian.org/debian/ jessie/main xml-core all 0.13+nmu2 [24.2 kB] Get:628 http://deb.debian.org/debian/ jessie/main docutils-common all 0.12+dfsg-1 [185 kB] Get:629 http://deb.debian.org/debian/ jessie/main docutils-doc all 0.12+dfsg-1 [896 kB] Get:630 http://deb.debian.org/debian/ jessie/main dssp amd64 2.2.1-2+b1 [167 kB] Get:631 http://deb.debian.org/debian/ jessie/main libkpathsea6 amd64 2014.20140926.35254-6 [154 kB] Get:632 http://deb.debian.org/debian/ jessie/main libptexenc1 amd64 2014.20140926.35254-6 [54.1 kB] Get:633 http://deb.debian.org/debian/ jessie/main libjbig2dec0 amd64 0.13-4~deb8u2 [60.2 kB] Get:634 http://deb.debian.org/debian/ jessie/main libgs9-common all 9.06~dfsg-2+deb8u7 [1981 kB] Get:635 http://deb.debian.org/debian/ jessie/main libgs9 amd64 9.06~dfsg-2+deb8u7 [1918 kB] Get:636 http://deb.debian.org/debian/ jessie/main libpotrace0 amd64 1.12-1+deb8u1 [25.2 kB] Get:637 http://deb.debian.org/debian/ jessie/main libsynctex1 amd64 2014.20140926.35254-6 [61.1 kB] Get:638 http://deb.debian.org/debian/ jessie/main tex-common all 5.03 [625 kB] Get:639 http://deb.debian.org/debian/ jessie/main texlive-binaries amd64 2014.20140926.35254-6 [6782 kB] Get:640 http://deb.debian.org/debian/ jessie/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB] Get:641 http://deb.debian.org/debian/ jessie/main ghostscript amd64 9.06~dfsg-2+deb8u7 [85.1 kB] Get:642 http://deb.debian.org/debian/ jessie/main dvipng amd64 1.14-2+b1 [84.4 kB] Get:643 http://deb.debian.org/debian/ jessie/main libhpdf-2.2.1 amd64 2.2.1-1.1 [322 kB] Get:644 http://deb.debian.org/debian/ jessie/main emboss-lib amd64 6.6.0+dfsg-1 [3102 kB] Get:645 http://deb.debian.org/debian/ jessie/main embassy-domainatrix amd64 0.1.650-1 [61.2 kB] Get:646 http://deb.debian.org/debian/ jessie/main embassy-domalign amd64 0.1.650-1 [66.6 kB] Get:647 http://deb.debian.org/debian/ jessie/main embassy-domsearch amd64 1:0.1.650-1 [60.6 kB] Get:648 http://deb.debian.org/debian/ jessie/main emboss-data all 6.6.0+dfsg-1 [60.8 MB] Get:649 http://deb.debian.org/debian/ jessie/main emboss amd64 6.6.0+dfsg-1 [1023 kB] Get:650 http://deb.debian.org/debian/ jessie/main exonerate amd64 2.2.0-6 [3053 kB] Get:651 http://deb.debian.org/debian/ jessie/main libfakeroot amd64 1.20.2-1 [44.7 kB] Get:652 http://deb.debian.org/debian/ jessie/main fakeroot amd64 1.20.2-1 [84.7 kB] Get:653 http://deb.debian.org/debian/ jessie/main python3-pkg-resources all 5.5.1-1 [34.2 kB] Get:654 http://deb.debian.org/debian/ jessie/main python3-nose all 1.3.4-1 [131 kB] Get:655 http://deb.debian.org/debian/ jessie/main fastaq all 1.5.0-1 [50.0 kB] Get:656 http://deb.debian.org/debian/ jessie/main fastdnaml amd64 1.2.2-10 [64.3 kB] Get:657 http://deb.debian.org/debian/ jessie/main fastjar amd64 2:0.98-5 [90.2 kB] Get:658 http://deb.debian.org/debian/ jessie/main fastlink amd64 4.1P-fix95-3 [415 kB] Get:659 http://deb.debian.org/debian/ jessie/main libcommons-math3-java all 3.3-1 [1729 kB] Get:660 http://deb.debian.org/debian/ jessie/main libjbzip2-java all 0.9.1-3 [39.9 kB] Get:661 http://deb.debian.org/debian/ jessie/main libsam-java all 1.113-1 [200 kB] Get:662 http://deb.debian.org/debian/ jessie/main fastqc all 0.11.2+dfsg-3 [360 kB] Get:663 http://deb.debian.org/debian/ jessie/main libgtextutils0 amd64 0.7-2 [18.9 kB] Get:664 http://deb.debian.org/debian/ jessie/main libgd-text-perl all 0.86-9 [41.4 kB] Get:665 http://deb.debian.org/debian/ jessie/main libgd-graph-perl all 1.48-2 [389 kB] Get:666 http://deb.debian.org/debian/ jessie/main libperlio-gzip-perl amd64 0.18-3+b1 [17.9 kB] Get:667 http://deb.debian.org/debian/ jessie/main fastx-toolkit amd64 0.0.14-1 [85.2 kB] Get:668 http://deb.debian.org/debian/ jessie/main jarwrapper all 0.48+deb8u1 [17.2 kB] Get:669 http://deb.debian.org/debian/ jessie/main junit all 3.8.2-8 [107 kB] Get:670 http://deb.debian.org/debian/ jessie/main libnb-org-openide-util-lookup-java all 7.4+dfsg1-2 [77.0 kB] Get:671 http://deb.debian.org/debian/ jessie/main libnb-org-openide-util-java all 7.4+dfsg1-2 [160 kB] Get:672 http://deb.debian.org/debian/ jessie/main libfreehep-util-java all 2.0.2-5 [47.7 kB] Get:673 http://deb.debian.org/debian/ jessie/main libfreehep-swing-java all 2.0.3-3 [190 kB] Get:674 http://deb.debian.org/debian/ jessie/main libfreehep-export-java all 2.1.1-2 [21.1 kB] Get:675 http://deb.debian.org/debian/ jessie/main libfreehep-graphics2d-java all 2.1.1-4 [121 kB] Get:676 http://deb.debian.org/debian/ jessie/main libfreehep-io-java all 2.0.2-4 [60.6 kB] Get:677 http://deb.debian.org/debian/ jessie/main libfreehep-graphicsio-java all 2.1.1-3 [344 kB] Get:678 http://deb.debian.org/debian/ jessie/main javahelp2 all 2.0.05.ds1-7 [886 kB] Get:679 http://deb.debian.org/debian/ jessie/main libtablelayout-java all 20090826-2 [50.3 kB] Get:680 http://deb.debian.org/debian/ jessie/main libjas-plotter-java all 2.2.6+dfsg1-2 [602 kB] Get:681 http://deb.debian.org/debian/ jessie/main libfreehep-graphicsio-tests-java all 2.1.1+dfsg1-3 [104 kB] Get:682 http://deb.debian.org/debian/ jessie/main libfreehep-graphicsio-emf-java all 2.1.1-emfplus+dfsg1-2 [370 kB] Get:683 http://deb.debian.org/debian/ jessie/main libfreehep-graphicsio-pdf-java all 2.1.1+dfsg-1 [71.6 kB] Get:684 http://deb.debian.org/debian/ jessie/main libfreehep-graphicsio-ps-java all 2.1.1-1 [46.6 kB] Get:685 http://deb.debian.org/debian/ jessie/main libfreehep-xml-java all 2.1.2+dfsg1-3 [133 kB] Get:686 http://deb.debian.org/debian/ jessie/main libfreehep-graphicsio-svg-java all 2.1.1-3 [24.8 kB] Get:687 http://deb.debian.org/debian/ jessie/main libfreehep-graphicsio-swf-java all 2.1.1+dfsg-1 [160 kB] Get:688 http://deb.debian.org/debian/ jessie/main libitext5-java all 5.5.3-2 [2043 kB] Get:689 http://deb.debian.org/debian/ jessie/main libjam-java all 0.0.r304-1 [164 kB] Get:690 http://deb.debian.org/debian/ jessie/main libjebl2-java all 0.0.r22-1 [495 kB] Get:691 http://deb.debian.org/debian/ jessie/main figtree all 1.4-2 [929 kB] Get:692 http://deb.debian.org/debian/ jessie/main filo amd64 1.1+2011123001.1 [44.6 kB] Get:693 http://deb.debian.org/debian/ jessie/main python-pyrex all 0.9.8.5-2.1 [222 kB] Get:694 http://deb.debian.org/debian/ jessie/main python-pysam amd64 0.7.7-1 [596 kB] Get:695 http://deb.debian.org/debian/ jessie/main fitgcp amd64 0.0.20130418-2 [12.2 kB] Get:696 http://deb.debian.org/debian/ jessie/main libtbb2 amd64 4.2~20140122-5 [121 kB] Get:697 http://deb.debian.org/debian/ jessie/main flexbar amd64 2.50-1 [238 kB] Get:698 http://deb.debian.org/debian/ jessie/main fonts-cabin all 1.5-2 [139 kB] Get:699 http://deb.debian.org/debian/ jessie/main fonts-comfortaa all 2.003-1 [133 kB] Get:700 http://deb.debian.org/debian/ jessie/main fonts-crosextra-caladea all 20130214-1 [82.1 kB] Get:701 http://deb.debian.org/debian/ jessie/main fonts-crosextra-carlito all 20130920-1 [745 kB] Get:702 http://deb.debian.org/debian/ jessie/main fonts-dejavu-extra all 2.34-1 [1771 kB] Get:703 http://deb.debian.org/debian/ jessie/main fonts-dejavu all 2.34-1 [30.8 kB] Get:704 http://deb.debian.org/debian/ jessie/main fonts-ebgaramond all 0.015+git20130628-3 [415 kB] Get:705 http://deb.debian.org/debian/ jessie/main fonts-ebgaramond-extra all 0.015+git20130628-3 [680 kB] Get:706 http://deb.debian.org/debian/ jessie/main fonts-font-awesome all 4.2.0~dfsg-1 [346 kB] Get:707 http://deb.debian.org/debian/ jessie/main fonts-freefont-otf all 20120503-4 [3186 kB] Get:708 http://deb.debian.org/debian/ jessie/main fonts-gfs-artemisia all 1.1-5 [259 kB] Get:709 http://deb.debian.org/debian/ jessie/main fonts-gfs-complutum all 1.1-6 [41.6 kB] Get:710 http://deb.debian.org/debian/ jessie/main fonts-gfs-didot all 1.1-6 [278 kB] Get:711 http://deb.debian.org/debian/ jessie/main fonts-gfs-neohellenic all 1.1-6 [215 kB] Get:712 http://deb.debian.org/debian/ jessie/main fonts-gfs-olga all 1.1-5 [33.2 kB] Get:713 http://deb.debian.org/debian/ jessie/main fonts-gfs-solomos all 1.1-5 [40.6 kB] Get:714 http://deb.debian.org/debian/ jessie/main fonts-inconsolata all 001.010-5 [61.6 kB] Get:715 http://deb.debian.org/debian/ jessie/main fonts-junicode all 0.7.8-2 [643 kB] Get:716 http://deb.debian.org/debian/ jessie/main fonts-linuxlibertine all 5.3.0-2 [1713 kB] Get:717 http://deb.debian.org/debian/ jessie/main fonts-lmodern all 2.004.4-5 [4539 kB] Get:718 http://deb.debian.org/debian/ jessie/main fonts-lobster all 2.0-2 [39.5 kB] Get:719 http://deb.debian.org/debian/ jessie/main fonts-lobstertwo all 2.0-2 [94.0 kB] Get:720 http://deb.debian.org/debian/ jessie/main fonts-oflb-asana-math all 000.907-6 [245 kB] Get:721 http://deb.debian.org/debian/ jessie/main fonts-sil-gentium all 20081126:1.02-13 [241 kB] Get:722 http://deb.debian.org/debian/ jessie/main fonts-sil-gentium-basic all 1.1-7 [382 kB] Get:723 http://deb.debian.org/debian/ jessie/main fonts-texgyre all 20140520-1 [7943 kB] Get:724 http://deb.debian.org/debian/ jessie/main ttf-dejavu-core all 2.34-1 [30.7 kB] Get:725 http://deb.debian.org/debian/ jessie/main ttf-dejavu-extra all 2.34-1 [30.8 kB] Get:726 http://deb.debian.org/debian/ jessie/main ttf-dejavu all 2.34-1 [30.5 kB] Get:727 http://deb.debian.org/debian/ jessie/main libgtkglext1 amd64 1.2.0-3.2 [89.1 kB] Get:728 http://deb.debian.org/debian/ jessie/main gamgi amd64 0.17.1-1 [673 kB] Get:729 http://deb.debian.org/debian/ jessie/main garlic amd64 1.6-1.1 [273 kB] Get:730 http://deb.debian.org/debian/ jessie/main python-reportlab-accel amd64 3.1.8-3+deb8u1 [25.7 kB] Get:731 http://deb.debian.org/debian/ jessie/main python-reportlab all 3.1.8-3+deb8u1 [453 kB] Get:732 http://deb.debian.org/debian/ jessie/main python-biopython amd64 1.64+dfsg-5 [1165 kB] Get:733 http://deb.debian.org/debian/ jessie/main bowtie amd64 1.1.1-2 [1369 kB] Get:734 http://deb.debian.org/debian/ jessie/main bowtie2 amd64 2.2.4-1 [1086 kB] Get:735 http://deb.debian.org/debian/ jessie/main seqan-apps amd64 1.4.1+dfsg-2 [7487 kB] Get:736 http://deb.debian.org/debian/ jessie/main gasic amd64 0.0.r18-2 [19.9 kB] Get:737 http://deb.debian.org/debian/ jessie/main libbio-graphics-perl all 2.39-2 [606 kB] Get:738 http://deb.debian.org/debian/ jessie/main libcgi-session-perl all 4.48-1+deb8u1 [119 kB] Get:739 http://deb.debian.org/debian/ jessie/main libjson-perl all 2.61-1 [84.7 kB] Get:740 http://deb.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:741 http://deb.debian.org/debian/ jessie/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:742 http://deb.debian.org/debian/ jessie/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:743 http://deb.debian.org/debian/ jessie/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:744 http://deb.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:745 http://deb.debian.org/debian/ jessie/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:746 http://deb.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:747 http://deb.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:748 http://deb.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:749 http://deb.debian.org/debian/ jessie/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:750 http://deb.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:751 http://deb.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:752 http://deb.debian.org/debian/ jessie/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:753 http://deb.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:754 http://deb.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:755 http://deb.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:756 http://deb.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:757 http://deb.debian.org/debian/ jessie/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:758 http://deb.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:759 http://deb.debian.org/debian/ jessie/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:760 http://deb.debian.org/debian/ jessie/main sqlite3 amd64 3.8.7.1-1+deb8u2 [101 kB] Get:761 http://deb.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:762 http://deb.debian.org/debian/ jessie/main libjs-prototype all 1.7.1-3 [44.3 kB] Get:763 http://deb.debian.org/debian/ jessie/main libjs-scriptaculous all 1.9.0-2 [129 kB] Get:764 http://deb.debian.org/debian/ jessie/main libanyevent-perl amd64 7.070-3 [404 kB] Get:765 http://deb.debian.org/debian/ jessie/main libanyevent-cachedns-perl all 0.08-1 [7040 B] Get:766 http://deb.debian.org/debian/ jessie/main libcommon-sense-perl amd64 3.73-2+b3 [23.7 kB] Get:767 http://deb.debian.org/debian/ jessie/main libanyevent-http-perl all 2.21-1 [34.5 kB] Get:768 http://deb.debian.org/debian/ jessie/main libstring-approx-perl amd64 3.27-1+b2 [40.8 kB] Get:769 http://deb.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:770 http://deb.debian.org/debian/ jessie/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:771 http://deb.debian.org/debian/ jessie/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:772 http://deb.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:773 http://deb.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:774 http://deb.debian.org/debian/ jessie/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:775 http://deb.debian.org/debian/ jessie/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:776 http://deb.debian.org/debian/ jessie/main libvm-ec2-perl all 1.28-1 [768 kB] Get:777 http://deb.debian.org/debian/ jessie/main gbrowse all 2.54+dfsg-3 [2316 kB] Get:778 http://deb.debian.org/debian/ jessie/main gdpc amd64 2.2.5-3 [33.2 kB] Get:779 http://deb.debian.org/debian/ jessie/main libsqlite0 amd64 2.8.17-12 [140 kB] Get:780 http://deb.debian.org/debian/ jessie/main gentle amd64 1.9+cvs20100605+dfsg1-3 [3717 kB] Get:781 http://deb.debian.org/debian/ jessie/main gff2aplot amd64 2.0-7 [328 kB] Get:782 http://deb.debian.org/debian/ jessie/main gff2ps all 0.98d-4 [51.3 kB] Get:783 http://deb.debian.org/debian/ jessie/main libgfortran-4.9-dev amd64 4.9.2-10+deb8u1 [281 kB] Get:784 http://deb.debian.org/debian/ jessie/main gfortran-4.9 amd64 4.9.2-10+deb8u1 [5303 kB] Get:785 http://deb.debian.org/debian/ jessie/main gfortran amd64 4:4.9.2-2 [1292 B] Get:786 http://deb.debian.org/debian/ jessie/main libglpk-java amd64 1.0.37-1 [784 kB] Get:787 http://deb.debian.org/debian/ jessie/main glpk-utils amd64 4.55-1 [159 kB] Get:788 http://deb.debian.org/debian/ jessie/main tophat amd64 2.0.13+dfsg-1 [717 kB] Get:789 http://deb.debian.org/debian/ jessie/main giira amd64 0.0.20140210-2 [141 kB] Get:790 http://deb.debian.org/debian/ jessie/main glam2 amd64 1064-3 [235 kB] Get:791 http://deb.debian.org/debian/ jessie/main aglfn all 1.7-3 [29.2 kB] Get:792 http://deb.debian.org/debian/ jessie/main gnuplot-tex all 4.6.6-2 [103 kB] Get:793 http://deb.debian.org/debian/ jessie/main gnuplot-data all 4.6.6-2 [149 kB] Get:794 http://deb.debian.org/debian/ jessie/main gnuplot-qt amd64 4.6.6-2 [951 kB] Get:795 http://deb.debian.org/debian/ jessie/main gnuplot all 4.6.6-2 [100 kB] Get:796 http://deb.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:797 http://deb.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:798 http://deb.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:799 http://deb.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:800 http://deb.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:801 http://deb.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:802 http://deb.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:803 http://deb.debian.org/debian/ jessie/main libgetopt-euclid-perl all 0.4.5-1 [47.3 kB] Get:804 http://deb.debian.org/debian/ jessie/main libmath-random-mt-perl amd64 1.16-1+b2 [15.7 kB] Get:805 http://deb.debian.org/debian/ jessie/main grinder all 0.5.3-3 [81.6 kB] Get:806 http://deb.debian.org/debian/ jessie/main gstreamer1.0-plugins-base amd64 1.4.4-2+deb8u1 [1285 kB] Get:807 http://deb.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:808 http://deb.debian.org/debian/ jessie/main libpvm3 amd64 3.4.5-12.6 [87.0 kB] Get:809 http://deb.debian.org/debian/ jessie/main hmmer2 amd64 2.3.2-8 [294 kB] Get:810 http://deb.debian.org/debian/ jessie/main idba amd64 1.1.2-1 [279 kB] Get:811 http://deb.debian.org/debian/ jessie/main imagemagick-6.q16 amd64 8:6.8.9.9-5+deb8u12 [515 kB] Get:812 http://deb.debian.org/debian/ jessie/main imagemagick amd64 8:6.8.9.9-5+deb8u12 [160 kB] Get:813 http://deb.debian.org/debian/ jessie/main infernal amd64 1.1.1-2 [1862 kB] Get:814 http://deb.debian.org/debian/ jessie/main libcommons-compress-java all 1.9-1 [344 kB] Get:815 http://deb.debian.org/debian/ jessie/main libcommons-net1-java all 1.4.1-5 [566 kB] Get:816 http://deb.debian.org/debian/ jessie/main ipig amd64 0.0.r5-1 [166 kB] Get:817 http://deb.debian.org/debian/ jessie/main python-pexpect all 3.2-1 [38.4 kB] Get:818 http://deb.debian.org/debian/ jessie/main python-simplegeneric all 0.8.1-1 [11.9 kB] Get:819 http://deb.debian.org/debian/ jessie/main ipython all 2.3.0-2 [616 kB] Get:820 http://deb.debian.org/debian/ jessie/main unzip amd64 6.0-16+deb8u3 [162 kB] Get:821 http://deb.debian.org/debian/ jessie/main java-wrappers all 0.1.28 [10.7 kB] Get:822 http://deb.debian.org/debian/ jessie/main libjmol-java all 12.2.32+dfsg2-1 [8308 kB] Get:823 http://deb.debian.org/debian/ jessie/main icedtea-netx-common all 1.5.3-1 [1131 kB] Get:824 http://deb.debian.org/debian/ jessie/main jmol-applet all 12.2.32+dfsg2-1 [4793 kB] Get:825 http://deb.debian.org/debian/ jessie/main libcommons-io-java all 2.4-2 [176 kB] Get:826 http://deb.debian.org/debian/ jessie/main libapache-mime4j-java all 0.7.2-3 [381 kB] Get:827 http://deb.debian.org/debian/ jessie/main libcastor-core-java all 1.3.2-3 [51.8 kB] Get:828 http://deb.debian.org/debian/ jessie/main libcastor-xml-java all 1.3.2-3 [713 kB] Get:829 http://deb.debian.org/debian/ jessie/main libhttpcore-java all 4.3.3-1 [539 kB] Get:830 http://deb.debian.org/debian/ jessie/main libhttpclient-java all 4.3.5-2 [549 kB] Get:831 http://deb.debian.org/debian/ jessie/main libhttpmime-java all 4.3.5-2 [73.8 kB] Get:832 http://deb.debian.org/debian/ jessie/main libjaba-client-java all 0+dfsg-1 [65.0 kB] Get:833 http://deb.debian.org/debian/ jessie/main libgnuinet-java all 1.1.2-2 [397 kB] Get:834 http://deb.debian.org/debian/ jessie/main libgnumail-java all 1.1.2-9 [287 kB] Get:835 http://deb.debian.org/debian/ jessie/main libjswingreader-java all 0.3-1 [80.0 kB] Get:836 http://deb.debian.org/debian/ jessie/main libmiglayout-java all 4.2-1 [97.9 kB] Get:837 http://deb.debian.org/debian/ jessie/main libvamsas-client-java all 0.2~git2011.10.17+1b42648-1 [521 kB] Get:838 http://deb.debian.org/debian/ jessie/main openjdk-7-jdk amd64 7u181-2.6.14-1~deb8u1 [16.2 MB] Get:839 http://deb.debian.org/debian/ jessie/main jalview all 2.7.dfsg-4 [3382 kB] Get:840 http://deb.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:841 http://deb.debian.org/debian/ jessie/main libjellyfish-2.0-2 amd64 2.1.4-1 [63.6 kB] Get:842 http://deb.debian.org/debian/ jessie/main jellyfish amd64 2.1.4-1 [347 kB] Get:843 http://deb.debian.org/debian/ jessie/main jmol all 12.2.32+dfsg2-1 [259 kB] Get:844 http://deb.debian.org/debian/ jessie/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:845 http://deb.debian.org/debian/ jessie/main libbcprov-java all 1.49+dfsg-3+deb8u2 [2002 kB] Get:846 http://deb.debian.org/debian/ jessie/main libbcpkix-java all 1.49+dfsg-3+deb8u2 [533 kB] Get:847 http://deb.debian.org/debian/ jessie/main libbcmail-java all 1.49+dfsg-3+deb8u2 [116 kB] Get:848 http://deb.debian.org/debian/ jessie/main libitext-java all 2.1.7-9 [1070 kB] Get:849 http://deb.debian.org/debian/ jessie/main king all 2.21.120420+dfsg-1 [1779 kB] Get:850 http://deb.debian.org/debian/ jessie/main kissplice amd64 2.2.1-3 [601 kB] Get:851 http://deb.debian.org/debian/ jessie/main ksh amd64 93u+20120801-1 [1583 kB] Get:852 http://deb.debian.org/debian/ jessie/main laptop-detect amd64 0.13.7 [5224 B] Get:853 http://deb.debian.org/debian/ jessie/main last-align amd64 490-1 [458 kB] Get:854 http://deb.debian.org/debian/ jessie/main liberror-perl all 0.17-1.1 [22.4 kB] Get:855 http://deb.debian.org/debian/ jessie/main libipc-sharelite-perl amd64 0.17-3+b2 [24.9 kB] Get:856 http://deb.debian.org/debian/ jessie/main libcache-cache-perl all 1.07-2 [76.2 kB] Get:857 http://deb.debian.org/debian/ jessie/main libace-perl amd64 1.92-3+b1 [310 kB] Get:858 http://deb.debian.org/debian/ jessie/main libai-fann-perl amd64 0.10-2+b1 [29.4 kB] Get:859 http://deb.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:860 http://deb.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:861 http://deb.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:862 http://deb.debian.org/debian/ jessie/main libalgorithm-merge-perl all 0.08-2 [13.5 kB] Get:863 http://deb.debian.org/debian/ jessie/main libalgorithm-munkres-perl all 0.08-2 [12.5 kB] Get:864 http://deb.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u11 [1362 B] Get:865 http://deb.debian.org/debian/ jessie/main libdevel-symdump-perl all 2.12-1 [17.1 kB] Get:866 http://deb.debian.org/debian/ jessie/main libapache2-mod-perl2 amd64 2.0.9~1624218-2+deb8u2 [903 kB] Get:867 http://deb.debian.org/debian/ jessie/main libapache-dbi-perl all 1.12-1 [54.6 kB] Get:868 http://deb.debian.org/debian/ jessie/main libapache2-reload-perl all 0.12-3 [17.3 kB] Get:869 http://deb.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:870 http://deb.debian.org/debian/ jessie/main libclass-method-modifiers-perl all 2.11-1 [18.5 kB] Get:871 http://deb.debian.org/debian/ jessie/main libsub-exporter-progressive-perl all 0.001011-1 [7748 B] Get:872 http://deb.debian.org/debian/ jessie/main libdevel-globaldestruction-perl all 0.13-1 [8676 B] Get:873 http://deb.debian.org/debian/ jessie/main libimport-into-perl all 1.002004-1 [11.5 kB] Get:874 http://deb.debian.org/debian/ jessie/main librole-tiny-perl all 1.003004-1 [19.4 kB] Get:875 http://deb.debian.org/debian/ jessie/main libstrictures-perl all 1.005005-1 [13.5 kB] Get:876 http://deb.debian.org/debian/ jessie/main libmoo-perl all 1.006001-1 [62.7 kB] Get:877 http://deb.debian.org/debian/ jessie/main libexporter-tiny-perl all 0.038-2 [28.7 kB] Get:878 http://deb.debian.org/debian/ jessie/main libtype-tiny-perl all 1.000004-1 [269 kB] Get:879 http://deb.debian.org/debian/ jessie/main libarray-compare-perl all 2.11-1 [14.2 kB] Get:880 http://deb.debian.org/debian/ jessie/main libasprintf-dev amd64 0.19.3-2 [31.1 kB] Get:881 http://deb.debian.org/debian/ jessie/main libasync-interrupt-perl amd64 1.20-1+b1 [33.8 kB] Get:882 http://deb.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:883 http://deb.debian.org/debian/ jessie/main libb-hooks-op-check-perl amd64 0.19-2+b1 [11.3 kB] Get:884 http://deb.debian.org/debian/ jessie/main libbambamc0 amd64 0.0.50-1 [35.4 kB] Get:885 http://deb.debian.org/debian/ jessie/main liblexical-sealrequirehints-perl amd64 0.007-1+b2 [14.4 kB] Get:886 http://deb.debian.org/debian/ jessie/main libbareword-filehandles-perl amd64 0.003-1+b2 [8922 B] Get:887 http://deb.debian.org/debian/ jessie/main libbio-asn1-entrezgene-perl all 1.700-1 [40.9 kB] Get:888 http://deb.debian.org/debian/ jessie/main libstaden-read1 amd64 1.13.7-1 [260 kB] Get:889 http://deb.debian.org/debian/ jessie/main libbio-scf-perl amd64 1.03-2+b1 [21.3 kB] Get:890 http://deb.debian.org/debian/ jessie/main libcarp-clan-perl all 6.04-1 [15.8 kB] Get:891 http://deb.debian.org/debian/ jessie/main libbit-vector-perl amd64 7.3-1+b2 [146 kB] Get:892 http://deb.debian.org/debian/ jessie/main libblas-dev amd64 1.2.20110419-10 [163 kB] Get:893 http://deb.debian.org/debian/ jessie/main libbsd-resource-perl amd64 1.2907-1+b2 [33.1 kB] Get:894 http://deb.debian.org/debian/ jessie/main libbz2-dev amd64 1.0.6-7+b3 [29.0 kB] Get:895 http://deb.debian.org/debian/ jessie/main libcanberra-gtk3-module amd64 0.30-2.1 [16.8 kB] Get:896 http://deb.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:897 http://deb.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:898 http://deb.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:899 http://deb.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:900 http://deb.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:901 http://deb.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:902 http://deb.debian.org/debian/ jessie/main libclass-xsaccessor-perl amd64 1.19-2+b4 [39.0 kB] Get:903 http://deb.debian.org/debian/ jessie/main libcofoja-java all 1.1-r150-2 [608 kB] Get:904 http://deb.debian.org/debian/ jessie/main libcommons-jexl2-java all 2.1.1-2 [245 kB] Get:905 http://deb.debian.org/debian/ jessie/main libconvert-binary-c-perl amd64 0.76-3+b2 [274 kB] Get:906 http://deb.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:907 http://deb.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:908 http://deb.debian.org/debian/ jessie/main libcrypt-rc4-perl all 2.02-2 [8150 B] Get:909 http://deb.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:910 http://deb.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:911 http://deb.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:912 http://deb.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:913 http://deb.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:914 http://deb.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:915 http://deb.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:916 http://deb.debian.org/debian/ jessie/main libdate-calc-perl all 6.3-2 [194 kB] Get:917 http://deb.debian.org/debian/ jessie/main libdate-calc-xs-perl amd64 6.3-2 [54.0 kB] Get:918 http://deb.debian.org/debian/ jessie/main libdate-manip-perl all 6.47-1 [923 kB] Get:919 http://deb.debian.org/debian/ jessie/main libdbd-pg-perl amd64 3.4.2-1 [203 kB] Get:920 http://deb.debian.org/debian/ jessie/main libpadwalker-perl amd64 1.98-1+b1 [20.7 kB] Get:921 http://deb.debian.org/debian/ jessie/main libdevel-caller-perl amd64 2.06-1+b2 [12.7 kB] Get:922 http://deb.debian.org/debian/ jessie/main libdevel-lexalias-perl amd64 0.05-1+b2 [9686 B] Get:923 http://deb.debian.org/debian/ jessie/main libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:924 http://deb.debian.org/debian/ jessie/main libfile-chdir-perl all 0.1008-1 [13.3 kB] Get:925 http://deb.debian.org/debian/ jessie/main libfile-copy-recursive-perl all 0.38-1 [20.6 kB] Get:926 http://deb.debian.org/debian/ jessie/main libfile-desktopentry-perl all 0.07-1 [18.5 kB] Get:927 http://deb.debian.org/debian/ jessie/main libfile-fcntllock-perl amd64 0.22-1+b1 [36.4 kB] Get:928 http://deb.debian.org/debian/ jessie/main libfile-which-perl all 1.09-1 [13.1 kB] Get:929 http://deb.debian.org/debian/ jessie/main libfile-homedir-perl all 1.00-1 [48.9 kB] Get:930 http://deb.debian.org/debian/ jessie/main libfile-mimeinfo-perl all 0.26-1 [50.1 kB] Get:931 http://deb.debian.org/debian/ jessie/main libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:932 http://deb.debian.org/debian/ jessie/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:933 http://deb.debian.org/debian/ jessie/main libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:934 http://deb.debian.org/debian/ jessie/main libg20 amd64 0.72-5+b1 [42.6 kB] Get:935 http://deb.debian.org/debian/ jessie/main libsvg-perl all 2.59-1 [75.2 kB] Get:936 http://deb.debian.org/debian/ jessie/main libgd-svg-perl all 0.33-1 [64.8 kB] Get:937 http://deb.debian.org/debian/ jessie/main libgettextpo-dev amd64 0.19.3-2 [153 kB] Get:938 http://deb.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:939 http://deb.debian.org/debian/ jessie/main libgmp-dev amd64 2:6.0.0+dfsg-6 [621 kB] Get:940 http://deb.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:941 http://deb.debian.org/debian/ jessie/main libipc-run-perl all 0.92-1+deb8u1 [101 kB] Get:942 http://deb.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:943 http://deb.debian.org/debian/ jessie/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:944 http://deb.debian.org/debian/ jessie/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:945 http://deb.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:946 http://deb.debian.org/debian/ jessie/main libgo-perl all 0.15-1 [311 kB] Get:947 http://deb.debian.org/debian/ jessie/main libgphoto2-l10n all 2.5.4-1.1 [440 kB] Get:948 http://deb.debian.org/debian/ jessie/main libheap-perl all 0.80-2 [43.0 kB] Get:949 http://deb.debian.org/debian/ jessie/main libgraph-perl all 1:0.96-1.1 [126 kB] Get:950 http://deb.debian.org/debian/ jessie/main libgtk2.0-bin amd64 2.24.25-3+deb8u2 [535 kB] Get:951 http://deb.debian.org/debian/ jessie/main libguard-perl amd64 1.022-2+b1 [16.5 kB] Get:952 http://deb.debian.org/debian/ jessie/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:953 http://deb.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:954 http://deb.debian.org/debian/ jessie/main libhtml-tableextract-perl all 2.11-1 [32.0 kB] Get:955 http://deb.debian.org/debian/ jessie/main xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:956 http://deb.debian.org/debian/ jessie/main x11proto-core-dev all 7.0.26-1 [729 kB] Get:957 http://deb.debian.org/debian/ jessie/main libice-dev amd64 2:1.0.9-1+b1 [66.3 kB] Get:958 http://deb.debian.org/debian/ jessie/main libindirect-perl amd64 0.33-1 [26.4 kB] Get:959 http://deb.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:960 http://deb.debian.org/debian/ jessie/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:961 http://deb.debian.org/debian/ jessie/main libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:962 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo-dev amd64 1:1.3.1-12 [455 kB] Get:963 http://deb.debian.org/debian/ jessie/main libjpeg-dev all 1:1.3.1-12 [49.3 kB] Get:964 http://deb.debian.org/debian/ jessie/main libjs-underscore all 1.7.0~dfsg-1 [49.9 kB] Get:965 http://deb.debian.org/debian/ jessie/main libjs-sphinxdoc all 1.2.3+dfsg-1 [41.1 kB] Get:966 http://deb.debian.org/debian/ jessie/main libjson-xs-perl amd64 2.340-1+b2 [85.9 kB] Get:967 http://deb.debian.org/debian/ jessie/main liblapack-dev amd64 3.5.0-4 [1884 kB] Get:968 http://deb.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:969 http://deb.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:970 http://deb.debian.org/debian/ jessie/main liblog4cpp5 amd64 1.0-4 [129 kB] Get:971 http://deb.debian.org/debian/ jessie/main liblzma-dev amd64 5.1.1alpha+20120614-2+b3 [256 kB] Get:972 http://deb.debian.org/debian/ jessie/main libmagickcore-6.q16-2-extra amd64 8:6.8.9.9-5+deb8u12 [175 kB] Get:973 http://deb.debian.org/debian/ jessie/main libsys-hostname-long-perl all 1.4-3 [11.6 kB] Get:974 http://deb.debian.org/debian/ jessie/main libmail-sendmail-perl all 0.79.16-1 [26.6 kB] Get:975 http://deb.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:976 http://deb.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:977 http://deb.debian.org/debian/ jessie/main libmath-derivative-perl all 0.01-6 [6214 B] Get:978 http://deb.debian.org/debian/ jessie/main libmath-spline-perl all 0.02-1 [7992 B] Get:979 http://deb.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:980 http://deb.debian.org/debian/ jessie/main libmldbm-perl all 2.05-1 [18.3 kB] Get:981 http://deb.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:982 http://deb.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:983 http://deb.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:984 http://deb.debian.org/debian/ jessie/main libmultidimensional-perl amd64 0.010-1+b2 [8506 B] Get:985 http://deb.debian.org/debian/ jessie/main libtinfo-dev amd64 5.9+20140913-1+deb8u3 [77.2 kB] Get:986 http://deb.debian.org/debian/ jessie/main libncurses5-dev amd64 5.9+20140913-1+deb8u3 [175 kB] Get:987 http://deb.debian.org/debian/ jessie/main libncursesw5-dev amd64 5.9+20140913-1+deb8u3 [203 kB] Get:988 http://deb.debian.org/debian/ jessie/main libnet-dbus-perl amd64 1.0.0-2+b2 [193 kB] Get:989 http://deb.debian.org/debian/ jessie/main libnetpbm10 amd64 2:10.0-15.2 [84.4 kB] Get:990 http://deb.debian.org/debian/ jessie/main libole-storage-lite-perl all 0.19-1 [26.1 kB] Get:991 http://deb.debian.org/debian/ jessie/main libsvm3 amd64 3.12-1 [48.4 kB] Get:992 http://deb.debian.org/debian/ jessie/main libxerces-c3.1 amd64 3.1.1-5.1+deb8u4 [864 kB] Get:993 http://deb.debian.org/debian/ jessie/main openms-common all 1.11.1-5 [28.4 MB] Get:994 http://deb.debian.org/debian/ jessie/main libopenms1.11 amd64 1.11.1-5 [5113 kB] Get:995 http://deb.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:996 http://deb.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:997 http://deb.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:998 http://deb.debian.org/debian/ jessie/main libpcre3-dev amd64 2:8.35-3.3+deb8u4 [441 kB] Get:999 http://deb.debian.org/debian/ jessie/main libperl4-corelibs-perl all 0.003-1 [43.6 kB] Get:1000 http://deb.debian.org/debian/ jessie/main zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:1001 http://deb.debian.org/debian/ jessie/main libpng12-dev amd64 1.2.50-2+deb8u3 [248 kB] Get:1002 http://deb.debian.org/debian/ jessie/main libpod-coverage-perl all 0.23-1 [23.9 kB] Get:1003 http://deb.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:1004 http://deb.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:1005 http://deb.debian.org/debian/ jessie/main libpostscript-perl all 0.06-2 [31.4 kB] Get:1006 http://deb.debian.org/debian/ jessie/main libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:1007 http://deb.debian.org/debian/ jessie/main libpython-dev amd64 2.7.9-1 [19.6 kB] Get:1008 http://deb.debian.org/debian/ jessie/main libpython-all-dev amd64 2.7.9-1 [1008 B] Get:1009 http://deb.debian.org/debian/ jessie/main libreadline6-dev amd64 6.3-8+b3 [124 kB] Get:1010 http://deb.debian.org/debian/ jessie/main libreadline-dev amd64 6.3-8+b3 [1002 B] Get:1011 http://deb.debian.org/debian/ jessie/main libsane-extras-common amd64 1.0.22.3 [12.8 kB] Get:1012 http://deb.debian.org/debian/ jessie/main libsane-extras amd64 1.0.22.3 [67.4 kB] Get:1013 http://deb.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:1014 http://deb.debian.org/debian/ jessie/main libsm-dev amd64 2:1.2.2-1+b1 [35.8 kB] Get:1015 http://deb.debian.org/debian/ jessie/main libsnp-sites1 amd64 1.5.0-1 [11.0 kB] Get:1016 http://deb.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:1017 http://deb.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:1018 http://deb.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:1019 http://deb.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:1020 http://deb.debian.org/debian/ jessie/main libsort-naturally-perl all 1.03-1 [13.9 kB] Get:1021 http://deb.debian.org/debian/ jessie/main libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:1022 http://deb.debian.org/debian/ jessie/main libunicode-map-perl amd64 0.112-11+b1 [146 kB] Get:1023 http://deb.debian.org/debian/ jessie/main libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:1024 http://deb.debian.org/debian/ jessie/main libsprng2 amd64 2.0a-8 [95.9 kB] Get:1025 http://deb.debian.org/debian/ jessie/main libsquizz amd64 0.99b+dfsg-3 [273 kB] Get:1026 http://deb.debian.org/debian/ jessie/main libsub-name-perl amd64 0.12-1 [12.1 kB] Get:1027 http://deb.debian.org/debian/ jessie/main libtree-dagnode-perl all 1.22-1 [59.5 kB] Get:1028 http://deb.debian.org/debian/ jessie/main libsvg-graph-perl all 0.02-2 [130 kB] Get:1029 http://deb.debian.org/debian/ jessie/main libtcmalloc-minimal4 amd64 2.2.1-0.2 [128 kB] Get:1030 http://deb.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:1031 http://deb.debian.org/debian/ jessie/main libtest-pod-perl all 1.48-1 [14.0 kB] Get:1032 http://deb.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:1033 http://deb.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:1034 http://deb.debian.org/debian/ jessie/main libtype-tiny-xs-perl amd64 0.010-1 [27.1 kB] Get:1035 http://deb.debian.org/debian/ jessie/main libutempter0 amd64 1.1.5-4 [8020 B] Get:1036 http://deb.debian.org/debian/ jessie/main libvisual-0.4-plugins amd64 0.4.0.dfsg.1-7 [147 kB] Get:1037 http://deb.debian.org/debian/ jessie/main libvte-common all 1:0.28.2-5 [435 kB] Get:1038 http://deb.debian.org/debian/ jessie/main libpango1.0-0 amd64 1.36.8-3 [183 kB] Get:1039 http://deb.debian.org/debian/ jessie/main libvte9 amd64 1:0.28.2-5 [726 kB] Get:1040 http://deb.debian.org/debian/ jessie/main libxau-dev amd64 1:1.0.8-1 [23.6 kB] Get:1041 http://deb.debian.org/debian/ jessie/main libxdmcp-dev amd64 1:1.1.1-1+b1 [40.2 kB] Get:1042 http://deb.debian.org/debian/ jessie/main x11proto-input-dev all 2.3.1-1 [157 kB] Get:1043 http://deb.debian.org/debian/ jessie/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:1044 http://deb.debian.org/debian/ jessie/main xtrans-dev all 1.3.4-1 [99.3 kB] Get:1045 http://deb.debian.org/debian/ jessie/main libxcb1-dev amd64 1.10-3+b1 [83.8 kB] Get:1046 http://deb.debian.org/debian/ jessie/main libx11-dev amd64 2:1.6.2-3+deb8u1 [799 kB] Get:1047 http://deb.debian.org/debian/ jessie/main libx11-doc all 2:1.6.2-3+deb8u1 [2025 kB] Get:1048 http://deb.debian.org/debian/ jessie/main libx11-protocol-perl all 0.56-6 [150 kB] Get:1049 http://deb.debian.org/debian/ jessie/main libxml-perl all 0.08-2 [113 kB] Get:1050 http://deb.debian.org/debian/ jessie/main libxml-regexp-perl all 0.04-1 [8370 B] Get:1051 http://deb.debian.org/debian/ jessie/main libxml-dom-perl all 1.44-1 [184 kB] Get:1052 http://deb.debian.org/debian/ jessie/main libxml-checker-perl all 0.13-6 [44.9 kB] Get:1053 http://deb.debian.org/debian/ jessie/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:1054 http://deb.debian.org/debian/ jessie/main libxml-dom-xpath-perl all 0.14-1 [9622 B] Get:1055 http://deb.debian.org/debian/ jessie/main libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:1056 http://deb.debian.org/debian/ jessie/main libxml-libxslt-perl amd64 1.92-1+b1 [47.7 kB] Get:1057 http://deb.debian.org/debian/ jessie/main libxml-sax-writer-perl all 0.54-1 [23.4 kB] Get:1058 http://deb.debian.org/debian/ jessie/main libxml-writer-perl all 0.625-1 [29.7 kB] Get:1059 http://deb.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:1060 http://deb.debian.org/debian/ jessie/main libxt-dev amd64 1:1.1.4-1+b1 [421 kB] Get:1061 http://deb.debian.org/debian/ jessie/main libyaml-libyaml-perl amd64 0.41-6 [67.0 kB] Get:1062 http://deb.debian.org/debian/ jessie/main libyaml-perl all 1.13-1 [69.7 kB] Get:1063 http://deb.debian.org/debian/ jessie/main libyaml-tiny-perl all 1.64-1 [31.8 kB] Get:1064 http://deb.debian.org/debian/ jessie/main libzeep3.0 amd64 3.0.2-1+b2 [418 kB] Get:1065 http://deb.debian.org/debian/ jessie/main zip amd64 3.0-8 [228 kB] Get:1066 http://deb.debian.org/debian/ jessie/main xdg-utils all 1.1.0~rc1+git20111210-7.4+deb8u1 [65.1 kB] Get:1067 http://deb.debian.org/debian/ jessie/main r-base-core amd64 3.1.1-1+deb8u1 [19.9 MB] Get:1068 http://deb.debian.org/debian/ jessie/main littler amd64 0.2.1-1 [36.2 kB] Get:1069 http://deb.debian.org/debian/ jessie/main lksctp-tools amd64 1.0.16+dfsg-2 [62.6 kB] Get:1070 http://deb.debian.org/debian/ jessie/main lmodern all 2.004.4-5 [9469 kB] Get:1071 http://deb.debian.org/debian/ jessie/main swi-prolog-nox amd64 6.6.6-5 [2818 kB] Get:1072 http://deb.debian.org/debian/ jessie/main swi-prolog-x amd64 6.6.6-5 [2010 kB] Get:1073 http://deb.debian.org/debian/ jessie/main swi-prolog amd64 6.6.6-5 [16.0 kB] Get:1074 http://deb.debian.org/debian/ jessie/main logol-bin amd64 1.7.0-2 [138 kB] Get:1075 http://deb.debian.org/debian/ jessie/main loki amd64 2.4.7.4-5 [342 kB] Get:1076 http://deb.debian.org/debian/ jessie/main genometools-common all 1.5.3-2 [139 kB] Get:1077 http://deb.debian.org/debian/ jessie/main libgenometools0 amd64 1.5.3-2 [1664 kB] Get:1078 http://deb.debian.org/debian/ jessie/main ltrsift amd64 1.0.2-1 [127 kB] Get:1079 http://deb.debian.org/debian/ jessie/main macs amd64 2.0.9.1-1 [484 kB] Get:1080 http://deb.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:1081 http://deb.debian.org/debian/ jessie/main manpages-dev all 3.74-1 [1865 kB] Get:1082 http://deb.debian.org/debian/ jessie/main mapsembler2 amd64 2.1.6+dfsg-1 [279 kB] Get:1083 http://deb.debian.org/debian/ jessie/main maq amd64 0.7.1-5 [321 kB] Get:1084 http://deb.debian.org/debian/ jessie/main maqview amd64 0.2.5-6 [301 kB] Get:1085 http://deb.debian.org/debian/ jessie/main massxpert-data all 3.4.1-1 [244 kB] Get:1086 http://deb.debian.org/debian/ jessie/main massxpert amd64 3.4.1-1 [1172 kB] Get:1087 http://deb.debian.org/debian/ jessie/main melting amd64 4.3.1+dfsg-1 [663 kB] Get:1088 http://deb.debian.org/debian/ jessie/main metastudent all 1.0.11-2 [5946 kB] Get:1089 http://deb.debian.org/debian/ jessie/main nast-ier amd64 20101212+dfsg-1 [20.0 kB] Get:1090 http://deb.debian.org/debian/ jessie/main wigeon all 20101212+dfsg-1 [29.5 kB] Get:1091 http://deb.debian.org/debian/ jessie/main microbiomeutil all 20101212+dfsg-1 [18.6 kB] Get:1092 http://deb.debian.org/debian/ jessie/main minia amd64 1.6088-1 [67.9 kB] Get:1093 http://deb.debian.org/debian/ jessie/main mipe all 1.1-4 [67.5 kB] Get:1094 http://deb.debian.org/debian/ jessie/main mira-assembler amd64 4.0.2-1+b1 [1403 kB] Get:1095 http://deb.debian.org/debian/ jessie/main mlv-smile amd64 1.47-3 [256 kB] Get:1096 http://deb.debian.org/debian/ jessie/main mothur amd64 1.33.3+dfsg-2 [3740 kB] Get:1097 http://deb.debian.org/debian/ jessie/main mrbayes amd64 3.2.3+dfsg-1 [576 kB] Get:1098 http://deb.debian.org/debian/ jessie/main rsync amd64 3.1.1-3+deb8u1 [390 kB] Get:1099 http://deb.debian.org/debian/ jessie/main mrs amd64 6.0.5+dfsg-1 [904 kB] Get:1100 http://deb.debian.org/debian/ jessie/main muscle amd64 1:3.8.31-1 [169 kB] Get:1101 http://deb.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:1102 http://deb.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:1103 http://deb.debian.org/debian/ jessie/main ncbi-epcr amd64 2.3.12-1-2 [122 kB] Get:1104 http://deb.debian.org/debian/ jessie/main ncbi-tools-bin amd64 6.1.20120620-8 [501 kB] Get:1105 http://deb.debian.org/debian/ jessie/main ncbi-tools-x11 amd64 6.1.20120620-8 [1131 kB] Get:1106 http://deb.debian.org/debian/ jessie/main ncoils amd64 2002-4 [21.0 kB] Get:1107 http://deb.debian.org/debian/ jessie/main netpbm amd64 2:10.0-15.2 [994 kB] Get:1108 http://deb.debian.org/debian/ jessie/main njplot amd64 2.4-2+b1 [89.6 kB] Get:1109 http://deb.debian.org/debian/ jessie/main notification-daemon amd64 0.7.6-2 [51.4 kB] Get:1110 http://deb.debian.org/debian/ jessie/main topp amd64 1.11.1-5 [7258 kB] Get:1111 http://deb.debian.org/debian/ jessie/main openms all 1.11.1-5 [30.0 kB] Get:1112 http://deb.debian.org/debian/ jessie/main paraclu amd64 9-1 [9976 B] Get:1113 http://deb.debian.org/debian/ jessie/main parsinsert amd64 1.04-1 [63.5 kB] Get:1114 http://deb.debian.org/debian/ jessie/main pdb2pqr amd64 1.9.0+dfsg-1 [367 kB] Get:1115 http://deb.debian.org/debian/ jessie/main perl-doc all 5.20.2-3+deb8u11 [7347 kB] Get:1116 http://deb.debian.org/debian/ jessie/main perl-tk amd64 1:804.032-3+b3 [2031 kB] Get:1117 http://deb.debian.org/debian/ jessie/main perlprimer all 1.1.21-2 [96.3 kB] Get:1118 http://deb.debian.org/debian/ jessie/main perm amd64 0.4.0-1 [114 kB] Get:1119 http://deb.debian.org/debian/ jessie/main phylip amd64 1:3.696+dfsg-1 [681 kB] Get:1120 http://deb.debian.org/debian/ jessie/main phyml amd64 2:20120412-2 [939 kB] Get:1121 http://deb.debian.org/debian/ jessie/main phyutility amd64 2.7.3-1 [897 kB] Get:1122 http://deb.debian.org/debian/ jessie/main picard-tools all 1.113-1 [650 kB] Get:1123 http://deb.debian.org/debian/ jessie/main python-tk amd64 2.7.8-2+b1 [26.7 kB] Get:1124 http://deb.debian.org/debian/ jessie/main plasmidomics all 0.2.0-3 [6574 B] Get:1125 http://deb.debian.org/debian/ jessie/main plink amd64 1.07-3 [1286 kB] Get:1126 http://deb.debian.org/debian/ jessie/main poa amd64 2.0+20060928-3 [50.8 kB] Get:1127 http://deb.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:1128 http://deb.debian.org/debian/ jessie/main texlive-base all 2014.20141024-2+deb8u1 [17.7 MB] Get:1129 http://deb.debian.org/debian/ jessie/main texlive-latex-base all 2014.20141024-2+deb8u1 [858 kB] Get:1130 http://deb.debian.org/debian/ jessie/main texlive-latex-recommended all 2014.20141024-2+deb8u1 [7630 kB] Get:1131 http://deb.debian.org/debian/ jessie/main texlive-pictures all 2014.20141024-2+deb8u1 [3039 kB] Get:1132 http://deb.debian.org/debian/ jessie/main texlive-generic-recommended all 2014.20141024-2+deb8u1 [2143 kB] Get:1133 http://deb.debian.org/debian/ jessie/main prerex amd64 6.5.3-1 [598 kB] Get:1134 http://deb.debian.org/debian/ jessie/main preview-latex-style all 11.87-3+deb8u1 [318 kB] Get:1135 http://deb.debian.org/debian/ jessie/main prime-phylo amd64 1.0.11-2 [877 kB] Get:1136 http://deb.debian.org/debian/ jessie/main primer3 amd64 2.3.6-1 [168 kB] Get:1137 http://deb.debian.org/debian/ jessie/main proalign amd64 0.603-1 [150 kB] Get:1138 http://deb.debian.org/debian/ jessie/main probabel amd64 0.4.3-2 [524 kB] Get:1139 http://deb.debian.org/debian/ jessie/main probalign amd64 1.4-3 [67.9 kB] Get:1140 http://deb.debian.org/debian/ jessie/main probcons amd64 1.12-9 [196 kB] Get:1141 http://deb.debian.org/debian/ jessie/main proda amd64 1.0-8 [58.3 kB] Get:1142 http://deb.debian.org/debian/ jessie/main prodigal amd64 1:2.6.1-1 [690 kB] Get:1143 http://deb.debian.org/debian/ jessie/main texlive-pstricks all 2014.20141024-1 [26.2 MB] Get:1144 http://deb.debian.org/debian/ jessie/main prosper all 1.00.4+cvs.2007.05.01-4 [461 kB] Get:1145 http://deb.debian.org/debian/ jessie/main ps2eps amd64 1.68+binaryfree-1 [37.7 kB] Get:1146 http://deb.debian.org/debian/ jessie/main python-wxversion all 3.0.1.1+dfsg-2 [113 kB] Get:1147 http://deb.debian.org/debian/ jessie/main python-wxgtk3.0 amd64 3.0.1.1+dfsg-2 [5195 kB] Get:1148 http://deb.debian.org/debian/ jessie/main python-yaml amd64 3.11-2 [112 kB] Get:1149 http://deb.debian.org/debian/ jessie/main pycorrfit all 0.8.3-2 [761 kB] Get:1150 http://deb.debian.org/debian/ jessie/main python-pmw all 1.3.2-6 [120 kB] Get:1151 http://deb.debian.org/debian/ jessie/main pymol amd64 1.7.2.1-1 [4867 kB] Get:1152 http://deb.debian.org/debian/ jessie/main sphinx-common all 1.2.3+dfsg-1 [407 kB] Get:1153 http://deb.debian.org/debian/ jessie/main pyqi all 0.3.2+dfsg-1 [73.6 kB] Get:1154 http://deb.debian.org/debian/ jessie/main python-pyfits amd64 1:3.3-2+b1 [394 kB] Get:1155 http://deb.debian.org/debian/ jessie/main python-multipletau all 0.1.4-1 [7318 B] Get:1156 http://deb.debian.org/debian/ jessie/main pyscanfcs amd64 0.2.2-2 [518 kB] Get:1157 http://deb.debian.org/debian/ jessie/main python-all amd64 2.7.9-1 [996 B] Get:1158 http://deb.debian.org/debian/ jessie/main python2.7-dev amd64 2.7.9-2+deb8u1 [290 kB] Get:1159 http://deb.debian.org/debian/ jessie/main python-dev amd64 2.7.9-1 [1182 B] Get:1160 http://deb.debian.org/debian/ jessie/main python-all-dev amd64 2.7.9-1 [1024 B] Get:1161 http://deb.debian.org/debian/ jessie/main python-cogent amd64 1.5.3-2 [1269 kB] Get:1162 http://deb.debian.org/debian/ jessie/main python-h5py amd64 2.2.1-1.1+b1 [511 kB] Get:1163 http://deb.debian.org/debian/ jessie/main python-biom-format amd64 2.1+dfsg-1 [214 kB] Get:1164 http://deb.debian.org/debian/ jessie/main python-biopython-doc all 1.64+dfsg-5 [9763 kB] Get:1165 http://deb.debian.org/debian/ jessie/main python-cairo amd64 1.8.8-1+b2 [84.2 kB] Get:1166 http://deb.debian.org/debian/ jessie/main python-chardet all 2.3.0-1 [96.2 kB] Get:1167 http://deb.debian.org/debian/ jessie/main python-crypto amd64 2.6.1-5+deb8u1 [256 kB] Get:1168 http://deb.debian.org/debian/ jessie/main python-roman all 2.0.0-1 [7898 B] Get:1169 http://deb.debian.org/debian/ jessie/main python-docutils all 0.12+dfsg-1 [361 kB] Get:1170 http://deb.debian.org/debian/ jessie/main python-egenix-mxtools amd64 3.2.8-1 [77.7 kB] Get:1171 http://deb.debian.org/debian/ jessie/main python-egenix-mxdatetime amd64 3.2.8-1 [71.3 kB] Get:1172 http://deb.debian.org/debian/ jessie/main python-gobject-2 amd64 2.28.6-12+b1 [348 kB] Get:1173 http://deb.debian.org/debian/ jessie/main python-gtk2 amd64 2.24.0-4 [637 kB] Get:1174 http://deb.debian.org/debian/ jessie/main python-glade2 amd64 2.24.0-4 [43.3 kB] Get:1175 http://deb.debian.org/debian/ jessie/main python-gmpy amd64 1.15-1 [171 kB] Get:1176 http://deb.debian.org/debian/ jessie/main python-pil amd64 2.6.1-2+deb8u3 [304 kB] Get:1177 http://deb.debian.org/debian/ jessie/main python-imaging all 2.6.1-2+deb8u3 [9846 B] Get:1178 http://deb.debian.org/debian/ jessie/main python-markupsafe amd64 0.23-1+b1 [15.9 kB] Get:1179 http://deb.debian.org/debian/ jessie/main python-jinja2 all 2.7.3-1 [170 kB] Get:1180 http://deb.debian.org/debian/ jessie/main python-lxml amd64 3.4.0-1 [754 kB] Get:1181 http://deb.debian.org/debian/ jessie/main python-mako all 1.0.0+dfsg-0.1 [61.4 kB] Get:1182 http://deb.debian.org/debian/ jessie/main python-mpmath all 0.19-1 [402 kB] Get:1183 http://deb.debian.org/debian/ jessie/main python-mysqldb amd64 1.2.3-2.1 [62.2 kB] Get:1184 http://deb.debian.org/debian/ jessie/main python-pyglet all 1.1.4.dfsg-2 [970 kB] Get:1185 http://deb.debian.org/debian/ jessie/main python-pygments all 2.0.1+dfsg-1.1+deb8u1 [482 kB] Get:1186 http://deb.debian.org/debian/ jessie/main python-pysqlite2 amd64 2.6.3-3 [69.6 kB] Get:1187 http://deb.debian.org/debian/ jessie/main python-qcli amd64 0.1.0-1 [13.4 kB] Get:1188 http://deb.debian.org/debian/ jessie/main python-renderpm amd64 3.1.8-3+deb8u1 [35.6 kB] Get:1189 http://deb.debian.org/debian/ jessie/main python-sphinx all 1.2.3+dfsg-1 [271 kB] Get:1190 http://deb.debian.org/debian/ jessie/main python-sqlalchemy all 0.9.8+dfsg-0.1 [604 kB] Get:1191 http://deb.debian.org/debian/ jessie/main python-sqlalchemy-ext amd64 0.9.8+dfsg-0.1 [18.6 kB] Get:1192 http://deb.debian.org/debian/ jessie/main python-sympy all 0.7.5-3 [2448 kB] Get:1193 http://deb.debian.org/debian/ jessie/main qiime-data all 1.8.0+dfsg-4 [1360 kB] Get:1194 http://deb.debian.org/debian/ jessie/main r-base-dev all 3.1.1-1+deb8u1 [4024 B] Get:1195 http://deb.debian.org/debian/ jessie/main r-cran-dbi amd64 0.3.1-1 [157 kB] Get:1196 http://deb.debian.org/debian/ jessie/main r-cran-rsqlite amd64 0.11.4-3 [305 kB] Get:1197 http://deb.debian.org/debian/ jessie/main r-bioc-biocgenerics all 0.10.0-1 [397 kB] Get:1198 http://deb.debian.org/debian/ jessie/main r-bioc-biobase amd64 2.24.0-1 [2198 kB] Get:1199 http://deb.debian.org/debian/ jessie/main r-bioc-iranges amd64 1.22.10-1 [1827 kB] Get:1200 http://deb.debian.org/debian/ jessie/main r-bioc-genomeinfodb all 1.0.2-2 [221 kB] Get:1201 http://deb.debian.org/debian/ jessie/main r-bioc-annotationdbi all 1.26.1-1 [4178 kB] Get:1202 http://deb.debian.org/debian/ jessie/main r-cran-codetools all 0.2-9-1 [45.7 kB] Get:1203 http://deb.debian.org/debian/ jessie/main r-cran-iterators all 1.0.7-1 [306 kB] Get:1204 http://deb.debian.org/debian/ jessie/main r-cran-foreach all 1.4.2-1 [371 kB] Get:1205 http://deb.debian.org/debian/ jessie/main r-cran-checkmate amd64 1.5.0-1 [255 kB] Get:1206 http://deb.debian.org/debian/ jessie/main r-cran-bbmisc amd64 1.7-1 [264 kB] Get:1207 http://deb.debian.org/debian/ jessie/main r-cran-brew amd64 1.0-6-1 [61.4 kB] Get:1208 http://deb.debian.org/debian/ jessie/main r-cran-digest amd64 0.6.4-1 [81.5 kB] Get:1209 http://deb.debian.org/debian/ jessie/main r-cran-pkgkitten all 0.1.2-1 [17.1 kB] Get:1210 http://deb.debian.org/debian/ jessie/main r-cran-rcpp amd64 0.11.3-1 [2044 kB] Get:1211 http://deb.debian.org/debian/ jessie/main r-cran-plyr amd64 1.8.1-2 [738 kB] Get:1212 http://deb.debian.org/debian/ jessie/main r-cran-stringr all 0.6.2-2 [71.8 kB] Get:1213 http://deb.debian.org/debian/ jessie/main r-cran-base64enc amd64 0.1-2-1 [19.9 kB] Get:1214 http://deb.debian.org/debian/ jessie/main r-cran-sendmailr amd64 1.2-1-1 [29.0 kB] Get:1215 http://deb.debian.org/debian/ jessie/main r-cran-fail amd64 1.2-1 [42.5 kB] Get:1216 http://deb.debian.org/debian/ jessie/main r-cran-batchjobs amd64 1.4-1 [407 kB] Get:1217 http://deb.debian.org/debian/ jessie/main r-bioc-biocparallel all 0.6.1-1 [321 kB] Get:1218 http://deb.debian.org/debian/ jessie/main r-cran-xml amd64 3.98-1.1-1 [1809 kB] Get:1219 http://deb.debian.org/debian/ jessie/main r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:1220 http://deb.debian.org/debian/ jessie/main r-cran-rcurl amd64 1.95-4.3-1+deb8u1 [527 kB] Get:1221 http://deb.debian.org/debian/ jessie/main r-bioc-biomart all 2.20.0-1 [365 kB] Get:1222 http://deb.debian.org/debian/ jessie/main r-bioc-xvector amd64 0.4.0-1 [333 kB] Get:1223 http://deb.debian.org/debian/ jessie/main r-bioc-biostrings amd64 2.32.1-1 [2251 kB] Get:1224 http://deb.debian.org/debian/ jessie/main r-cran-dichromat all 2.0.0-3 [146 kB] Get:1225 http://deb.debian.org/debian/ jessie/main r-cran-foreign amd64 0.8.61-1 [213 kB] Get:1226 http://deb.debian.org/debian/ jessie/main r-cran-chron amd64 2.3-45-1 [102 kB] Get:1227 http://deb.debian.org/debian/ jessie/main r-cran-lattice amd64 0.20-29-1 [713 kB] Get:1228 http://deb.debian.org/debian/ jessie/main r-cran-cluster amd64 1.15.3-1 [475 kB] Get:1229 http://deb.debian.org/debian/ jessie/main r-cran-survival amd64 2.37-7-1 [4443 kB] Get:1230 http://deb.debian.org/debian/ jessie/main r-cran-formula all 1.1-2-1 [159 kB] Get:1231 http://deb.debian.org/debian/ jessie/main r-cran-rpart amd64 4.1-8-1 [862 kB] Get:1232 http://deb.debian.org/debian/ jessie/main r-cran-rcolorbrewer all 1.0-5-2 [25.5 kB] Get:1233 http://deb.debian.org/debian/ jessie/main r-cran-latticeextra amd64 0.6-26-1 [2065 kB] Get:1234 http://deb.debian.org/debian/ jessie/main r-cran-hmisc amd64 3.14-5-1 [1526 kB] Get:1235 http://deb.debian.org/debian/ jessie/main r-cran-nnet amd64 7.3-8-1 [94.2 kB] Get:1236 http://deb.debian.org/debian/ jessie/main r-cran-colorspace amd64 1.2-4-1 [348 kB] Get:1237 http://deb.debian.org/debian/ jessie/main r-cran-munsell all 0.4.2-1 [116 kB] Get:1238 http://deb.debian.org/debian/ jessie/main r-cran-labeling all 0.3-1 [39.9 kB] Get:1239 http://deb.debian.org/debian/ jessie/main r-cran-scales all 0.2.4-1 [153 kB] Get:1240 http://deb.debian.org/debian/ jessie/main r-bioc-genomicranges amd64 1.16.4-2 [1120 kB] Get:1241 http://deb.debian.org/debian/ jessie/main r-bioc-rsamtools amd64 1.16.1-2 [3132 kB] Get:1242 http://deb.debian.org/debian/ jessie/main r-bioc-bsgenome all 1.32.0-1 [763 kB] Get:1243 http://deb.debian.org/debian/ jessie/main r-bioc-genomicalignments amd64 1.0.6-1 [1244 kB] Get:1244 http://deb.debian.org/debian/ jessie/main r-bioc-rtracklayer amd64 1.24.2-1 [1776 kB] Get:1245 http://deb.debian.org/debian/ jessie/main r-bioc-genomicfeatures all 1.16.3-1 [886 kB] Get:1246 http://deb.debian.org/debian/ jessie/main r-bioc-variantannotation amd64 1.10.5-1 [1788 kB] Get:1247 http://deb.debian.org/debian/ jessie/main r-bioc-biovizbase amd64 1.12.3-1 [2524 kB] Get:1248 http://deb.debian.org/debian/ jessie/main r-cran-reshape2 amd64 1.4-1 [83.5 kB] Get:1249 http://deb.debian.org/debian/ jessie/main r-cran-gtable all 0.1.2-1.1 [62.3 kB] Get:1250 http://deb.debian.org/debian/ jessie/main r-cran-mass amd64 7.3-34-1 [1015 kB] Get:1251 http://deb.debian.org/debian/ jessie/main r-cran-proto amd64 0.3-10-1 [462 kB] Get:1252 http://deb.debian.org/debian/ jessie/main r-cran-ggplot2 all 1.0.0-1 [2660 kB] Get:1253 http://deb.debian.org/debian/ jessie/main r-cran-fastcluster amd64 1.1.13-1 [175 kB] Get:1254 http://deb.debian.org/debian/ jessie/main r-cran-r.methodss3 amd64 1.6.1-1 [54.4 kB] Get:1255 http://deb.debian.org/debian/ jessie/main r-cran-matrixstats amd64 0.10.3-1 [206 kB] Get:1256 http://deb.debian.org/debian/ jessie/main r-bioc-gviz all 1.8.4-1 [3111 kB] Get:1257 http://deb.debian.org/debian/ jessie/main r-bioc-cummerbund all 2.6.1-1 [1851 kB] Get:1258 http://deb.debian.org/debian/ jessie/main r-bioc-hilbertvis amd64 1.24.0-1 [971 kB] Get:1259 http://deb.debian.org/debian/ jessie/main r-cran-hwriter all 1.3.2-1 [137 kB] Get:1260 http://deb.debian.org/debian/ jessie/main r-bioc-shortread amd64 1.22.0-1 [4163 kB] Get:1261 http://deb.debian.org/debian/ jessie/main r-cran-abind all 1.4-0-2 [36.5 kB] Get:1262 http://deb.debian.org/debian/ jessie/main r-cran-nlme amd64 3.1.117-1 [1995 kB] Get:1263 http://deb.debian.org/debian/ jessie/main r-cran-ape amd64 3.1-4-1 [1234 kB] Get:1264 http://deb.debian.org/debian/ jessie/main r-cran-boot all 1.3-13-1 [571 kB] Get:1265 http://deb.debian.org/debian/ jessie/main r-cran-class amd64 7.3-11-1 [81.3 kB] Get:1266 http://deb.debian.org/debian/ jessie/main r-cran-multicore amd64 0.2-1 [19.2 kB] Get:1267 http://deb.debian.org/debian/ jessie/main r-cran-domc all 1.3.3-1 [157 kB] Get:1268 http://deb.debian.org/debian/ jessie/main r-cran-doparallel amd64 1.0.8-1 [182 kB] Get:1269 http://deb.debian.org/debian/ jessie/main r-cran-evaluate all 0.5.5-1 [45.0 kB] Get:1270 http://deb.debian.org/debian/ jessie/main r-cran-g.data all 2.4-1 [86.1 kB] Get:1271 http://deb.debian.org/debian/ jessie/main r-cran-genabel.data amd64 1.0.0-1 [2423 kB] Get:1272 http://deb.debian.org/debian/ jessie/main r-cran-genabel amd64 1.8-0-1 [2894 kB] Get:1273 http://deb.debian.org/debian/ jessie/main r-cran-getopt amd64 1.20.0-1 [24.3 kB] Get:1274 http://deb.debian.org/debian/ jessie/main r-cran-kernsmooth amd64 2.23-13-1 [81.4 kB] Get:1275 http://deb.debian.org/debian/ jessie/main r-cran-maps amd64 2.3-7-1 [1399 kB] Get:1276 http://deb.debian.org/debian/ jessie/main r-cran-mapproj amd64 1.2-2-1 [50.0 kB] Get:1277 http://deb.debian.org/debian/ jessie/main r-cran-matrix amd64 1.1-4-1 [2918 kB] Get:1278 http://deb.debian.org/debian/ jessie/main r-cran-mgcv amd64 1.8-3-1 [1728 kB] Get:1279 http://deb.debian.org/debian/ jessie/main r-cran-optparse all 1.2.0-1 [54.8 kB] Get:1280 http://deb.debian.org/debian/ jessie/main r-cran-permute all 0.8-3-1 [510 kB] Get:1281 http://deb.debian.org/debian/ jessie/main r-cran-qtl amd64 1.33-7-1 [4406 kB] Get:1282 http://deb.debian.org/debian/ jessie/main r-cran-sp amd64 1:1.0-15-1 [1447 kB] Get:1283 http://deb.debian.org/debian/ jessie/main r-cran-spatial amd64 7.3-8-1 [119 kB] Get:1284 http://deb.debian.org/debian/ jessie/main tk8.6 amd64 8.6.2-1 [71.1 kB] Get:1285 http://deb.debian.org/debian/ jessie/main tcl8.6 amd64 8.6.2+dfsg-2 [122 kB] Get:1286 http://deb.debian.org/debian/ jessie/main tcl amd64 8.6.0+8 [5366 B] Get:1287 http://deb.debian.org/debian/ jessie/main tk amd64 8.6.0+8 [5388 B] Get:1288 http://deb.debian.org/debian/ jessie/main tk-table amd64 2.10-2 [116 kB] Get:1289 http://deb.debian.org/debian/ jessie/main r-cran-tcltk2 all 1.2-10-1 [674 kB] Get:1290 http://deb.debian.org/debian/ jessie/main r-cran-testthat amd64 0.9.1-1 [243 kB] Get:1291 http://deb.debian.org/debian/ jessie/main r-cran-vegan amd64 2.0-10-1 [2389 kB] Get:1292 http://deb.debian.org/debian/ jessie/main r-doc-html all 3.1.1-1+deb8u1 [529 kB] Get:1293 http://deb.debian.org/debian/ jessie/main r-other-bio3d all 1.1-5-1 [9460 kB] Get:1294 http://deb.debian.org/debian/ jessie/main r-other-mott-happy.hbrem amd64 2.4-1 [145 kB] Get:1295 http://deb.debian.org/debian/ jessie/main r-recommended all 3.1.1-1+deb8u1 [2856 B] Get:1296 http://deb.debian.org/debian/ jessie/main rasmol amd64 2.7.5.2-2 [1688 kB] Get:1297 http://deb.debian.org/debian/ jessie/main raster3d amd64 3.0-3-1 [162 kB] Get:1298 http://deb.debian.org/debian/ jessie/main raxml amd64 8.1.1-3 [1079 kB] Get:1299 http://deb.debian.org/debian/ jessie/main readseq amd64 1-11 [54.5 kB] Get:1300 http://deb.debian.org/debian/ jessie/main relion-bin amd64 1.3+dfsg-2 [172 kB] Get:1301 http://deb.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:1302 http://deb.debian.org/debian/ jessie/main rnahybrid amd64 2.1.1-2 [285 kB] Get:1303 http://deb.debian.org/debian/ jessie/main rtax all 0.984-2 [25.8 kB] Get:1304 http://deb.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:1305 http://deb.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:1306 http://deb.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:1307 http://deb.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:1308 http://deb.debian.org/debian/ jessie/main saint amd64 2.4.0+dfsg-1 [84.1 kB] Get:1309 http://deb.debian.org/debian/ jessie/main samtools amd64 0.1.19-1 [563 kB] Get:1310 http://deb.debian.org/debian/ jessie/main update-inetd all 4.43 [21.8 kB] Get:1311 http://deb.debian.org/debian/ jessie/main sane-utils amd64 1.0.24-8+deb8u2 [223 kB] Get:1312 http://deb.debian.org/debian/ jessie/main seaview amd64 1:4.5.3.1-2 [365 kB] Get:1313 http://deb.debian.org/debian/ jessie/main seqtk amd64 1.0-1 [19.6 kB] Get:1314 http://deb.debian.org/debian/ jessie/main sibsim4 amd64 0.20-2 [28.8 kB] Get:1315 http://deb.debian.org/debian/ jessie/main sigma-align amd64 1.1.3-3 [25.9 kB] Get:1316 http://deb.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:1317 http://deb.debian.org/debian/ jessie/main smalt amd64 0.7.6-4 [109 kB] Get:1318 http://deb.debian.org/debian/ jessie/main snp-sites amd64 1.5.0-1 [7038 B] Get:1319 http://deb.debian.org/debian/ jessie/main soapdenovo amd64 1.05-2 [318 kB] Get:1320 http://deb.debian.org/debian/ jessie/main soapdenovo2 amd64 240+dfsg-2 [444 kB] Get:1321 http://deb.debian.org/debian/ jessie/main sphinx-doc all 1.2.3+dfsg-1 [1002 kB] Get:1322 http://deb.debian.org/debian/ jessie/main squizz amd64 0.99b+dfsg-3 [30.2 kB] Get:1323 http://deb.debian.org/debian/ jessie/main sra-toolkit-libs0 amd64 2.3.5-2+dfsg-1 [1122 kB] Get:1324 http://deb.debian.org/debian/ jessie/main sra-toolkit amd64 2.3.5-2+dfsg-1 [905 kB] Get:1325 http://deb.debian.org/debian/ jessie/main ssake all 3.8.2-1 [41.9 kB] Get:1326 http://deb.debian.org/debian/ jessie/main ssl-cert all 1.0.35 [20.9 kB] Get:1327 http://deb.debian.org/debian/ jessie/main staden-common all 2.0.0+b10-1.1 [1939 kB] Get:1328 http://deb.debian.org/debian/ jessie/main staden-io-lib-utils amd64 1.13.7-1 [210 kB] Get:1329 http://deb.debian.org/debian/ jessie/main tklib all 0.6-1+deb8u1 [1023 kB] Get:1330 http://deb.debian.org/debian/ jessie/main staden amd64 2.0.0+b10-1.1 [1560 kB] Get:1331 http://deb.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:1332 http://deb.debian.org/debian/ jessie/main tabix amd64 1.1-1 [190 kB] Get:1333 http://deb.debian.org/debian/ jessie/main tcllib all 1.16-dfsg-2 [3950 kB] Get:1334 http://deb.debian.org/debian/ jessie/main tcpd amd64 7.6.q-25 [22.9 kB] Get:1335 http://deb.debian.org/debian/ jessie/main tex-gyre all 20140520-1 [5051 kB] Get:1336 http://deb.debian.org/debian/ jessie/main texlive-extra-utils all 2014.20141024-1 [10.6 MB] Get:1337 http://deb.debian.org/debian/ jessie/main texlive-font-utils all 2014.20141024-1 [1728 kB] Get:1338 http://deb.debian.org/debian/ jessie/main ttf-adf-universalis all 0.20090423-2 [221 kB] Get:1339 http://deb.debian.org/debian/ jessie/main ttf-adf-gillius all 0.20090423-2 [400 kB] Get:1340 http://deb.debian.org/debian/ jessie/main fonts-stix all 1.1.1-1 [588 kB] Get:1341 http://deb.debian.org/debian/ jessie/main ttf-adf-accanthis all 0.20090423-2 [401 kB] Get:1342 http://deb.debian.org/debian/ jessie/main texlive-fonts-extra all 2014.20141024-1 [204 MB] Get:1343 http://deb.debian.org/debian/ jessie/main texlive-fonts-extra-doc all 2014.20141024-1 [60.3 MB] Get:1344 http://deb.debian.org/debian/ jessie/main texlive-fonts-recommended all 2014.20141024-2+deb8u1 [5654 kB] Get:1345 http://deb.debian.org/debian/ jessie/main texlive-fonts-recommended-doc all 2014.20141024-2+deb8u1 [2758 kB] Get:1346 http://deb.debian.org/debian/ jessie/main texlive-latex-base-doc all 2014.20141024-2+deb8u1 [38.3 MB] Get:1347 http://deb.debian.org/debian/ jessie/main texlive-latex-extra all 2014.20141024-1 [7604 kB] Get:1348 http://deb.debian.org/debian/ jessie/main texlive-latex-extra-doc all 2014.20141024-1 [327 MB] Get:1349 http://deb.debian.org/debian/ jessie/main texlive-latex-recommended-doc all 2014.20141024-2+deb8u1 [37.4 MB] Get:1350 http://deb.debian.org/debian/ jessie/main texlive-math-extra all 2014.20141024-1 [13.3 MB] Get:1351 http://deb.debian.org/debian/ jessie/main texlive-pictures-doc all 2014.20141024-2+deb8u1 [72.0 MB] Get:1352 http://deb.debian.org/debian/ jessie/main texlive-pstricks-doc all 2014.20141024-1 [85.6 MB] Get:1353 http://deb.debian.org/debian/ jessie/main theseus amd64 3.0.0-1 [1146 kB] Get:1354 http://deb.debian.org/debian/ jessie/main tigr-glimmer amd64 3.02-3 [276 kB] Get:1355 http://deb.debian.org/debian/ jessie/main tipa all 2:1.3-20 [2972 kB] Get:1356 http://deb.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:1357 http://deb.debian.org/debian/ jessie/main transtermhp amd64 2.09-2 [123 kB] Get:1358 http://deb.debian.org/debian/ jessie/main tree-puzzle amd64 5.2-7+b1 [150 kB] Get:1359 http://deb.debian.org/debian/ jessie/main tree-puzzle-doc all 5.2-7 [416 kB] Get:1360 http://deb.debian.org/debian/ jessie/main treeviewx amd64 0.5.1+20100823-3 [174 kB] Get:1361 http://deb.debian.org/debian/ jessie/main trimmomatic all 0.32+dfsg-4 [105 kB] Get:1362 http://deb.debian.org/debian/ jessie/main uc-echo amd64 1.12-7 [75.2 kB] Get:1363 http://deb.debian.org/debian/ jessie/main velvet amd64 1.2.10+dfsg1-1 [683 kB] Get:1364 http://deb.debian.org/debian/ jessie/main velvetoptimiser all 2.2.5-2 [24.9 kB] Get:1365 http://deb.debian.org/debian/ jessie/main xbitmaps all 1.1.1-2 [32.1 kB] Get:1366 http://deb.debian.org/debian/ jessie/main xterm amd64 312-2 [605 kB] Get:1367 http://deb.debian.org/debian/ jessie/main vprerex amd64 6.5.3-1 [25.6 kB] Get:1368 http://deb.debian.org/debian/ jessie/main wise-data all 2.4.1-17 [108 kB] Get:1369 http://deb.debian.org/debian/ jessie/main wise amd64 2.4.1-17 [961 kB] Get:1370 http://deb.debian.org/debian/ jessie/main x11-utils amd64 7.7+2 [191 kB] Get:1371 http://deb.debian.org/debian/ jessie/main x11-xserver-utils amd64 7.7+3+b1 [158 kB] Get:1372 http://deb.debian.org/debian/ jessie/main xauth amd64 1:1.0.9-1 [38.2 kB] Get:1373 http://deb.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:1374 http://deb.debian.org/debian/ jessie/main xsltproc amd64 1.1.28-2+deb8u3 [118 kB] Get:1375 http://deb.debian.org/debian/ jessie/main zalign amd64 0.9.1-1+b1 [81.1 kB] Get:1376 http://deb.debian.org/debian/ jessie/main acedb-other amd64 4.9.39+dfsg.01-5 [17.3 kB] Get:1377 http://deb.debian.org/debian/ jessie/main acedb-other-belvu amd64 4.9.39+dfsg.01-5 [210 kB] Get:1378 http://deb.debian.org/debian/ jessie/main acedb-other-dotter amd64 4.9.39+dfsg.01-5 [228 kB] Get:1379 http://deb.debian.org/debian/ jessie/main ampliconnoise amd64 1.29-2 [467 kB] Get:1380 http://deb.debian.org/debian/ jessie/main autodock-vina amd64 1.1.2-3+b1 [192 kB] Get:1381 http://deb.debian.org/debian/ jessie/main python-gdata all 2.0.18+dfsg1-2 [358 kB] Get:1382 http://deb.debian.org/debian/ jessie/main bauble all 0.9.7-2 [781 kB] Get:1383 http://deb.debian.org/debian/ jessie/main concavity amd64 0.1-2 [315 kB] Get:1384 http://deb.debian.org/debian/ jessie/main conservation-code all 20110309.0-3 [25.3 kB] Get:1385 http://deb.debian.org/debian/ jessie/main critterding amd64 1.0-beta12.1-1.2 [860 kB] Get:1386 http://deb.debian.org/debian/ jessie/main disulfinder-data all 1.2.11-4 [1131 kB] Get:1387 http://deb.debian.org/debian/ jessie/main disulfinder amd64 1.2.11-4 [237 kB] Get:1388 http://deb.debian.org/debian/ jessie/main edtsurf amd64 0.2009-3 [58.6 kB] Get:1389 http://deb.debian.org/debian/ jessie/main fasttree amd64 2.1.7-2 [128 kB] Get:1390 http://deb.debian.org/debian/ jessie/main libffindex0 amd64 0.9.9.3-2 [15.8 kB] Get:1391 http://deb.debian.org/debian/ jessie/main ffindex amd64 0.9.9.3-2 [23.3 kB] Get:1392 http://deb.debian.org/debian/ jessie/main freecontact amd64 1.0.21-3+b1 [315 kB] Get:1393 http://deb.debian.org/debian/ jessie/main genometools amd64 1.5.3-2 [1750 kB] Get:1394 http://deb.debian.org/debian/ jessie/main gromacs-data all 5.0.2-1 [785 kB] Get:1395 http://deb.debian.org/debian/ jessie/main gromacs amd64 5.0.2-1 [11.5 MB] Get:1396 http://deb.debian.org/debian/ jessie/main hhsuite-data all 2.0.16-5 [2163 kB] Get:1397 http://deb.debian.org/debian/ jessie/main hhsuite amd64 2.0.16-5 [740 kB] Get:1398 http://deb.debian.org/debian/ jessie/main libconfig-inifiles-perl all 2.83-3 [54.0 kB] Get:1399 http://deb.debian.org/debian/ jessie/main libev-perl amd64 4.18-1 [244 kB] Get:1400 http://deb.debian.org/debian/ jessie/main libhwloc-plugins amd64 1.10.0-3 [15.2 kB] Get:1401 http://deb.debian.org/debian/ jessie/main librg-exception-perl all 1.0.3-1 [3104 B] Get:1402 http://deb.debian.org/debian/ jessie/main librg-reprof-bundle-perl all 1.0.1-1 [8962 kB] Get:1403 http://deb.debian.org/debian/ jessie/main profphd-utils amd64 1.0.10-1 [413 kB] Get:1404 http://deb.debian.org/debian/ jessie/main librg-utils-perl all 1.0.43-2 [111 kB] Get:1405 http://deb.debian.org/debian/ jessie/main libset-scalar-perl all 1.29-1 [35.3 kB] Get:1406 http://deb.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:1407 http://deb.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] Get:1408 http://deb.debian.org/debian/ jessie/main med-tasks all 2.0 [14.7 kB] Get:1409 http://deb.debian.org/debian/ jessie/main med-config all 2.0 [14.2 kB] Get:1410 http://deb.debian.org/debian/ jessie/main med-bio all 2.0 [15.4 kB] Get:1411 http://deb.debian.org/debian/ jessie/main openmpi-common all 1.6.5-9.1+deb8u1 [110 kB] Get:1412 http://deb.debian.org/debian/ jessie/main openmpi-bin amd64 1.6.5-9.1+deb8u1 [154 kB] Get:1413 http://deb.debian.org/debian/ jessie/main mpi-default-bin amd64 1.0.2+nmu2 [3356 B] Get:1414 http://deb.debian.org/debian/ jessie/main ncbi-seg amd64 0.0.20000620-2 [78.2 kB] Get:1415 http://deb.debian.org/debian/ jessie/main neobio all 0.0.20030929-1.1 [443 kB] Get:1416 http://deb.debian.org/debian/ jessie/main profnet-norsnet amd64 1.0.22-2 [39.1 kB] Get:1417 http://deb.debian.org/debian/ jessie/main norsnet all 1.0.17-1 [44.4 kB] Get:1418 http://deb.debian.org/debian/ jessie/main norsp all 1.0.6-1 [283 kB] Get:1419 http://deb.debian.org/debian/ jessie/main populations amd64 1.2.33+svn0120106-2.1 [210 kB] Get:1420 http://deb.debian.org/debian/ jessie/main pp-popularity-contest amd64 1.0.6-2+b1 [35.3 kB] Get:1421 http://deb.debian.org/debian/ jessie/main predictnls all 1.0.20-1 [2146 kB] Get:1422 http://deb.debian.org/debian/ jessie/main profnet-bval amd64 1.0.22-2 [39.9 kB] Get:1423 http://deb.debian.org/debian/ jessie/main profbval all 1.0.22-1 [73.1 kB] Get:1424 http://deb.debian.org/debian/ jessie/main profnet-isis amd64 1.0.22-2 [39.0 kB] Get:1425 http://deb.debian.org/debian/ jessie/main profisis all 1.0.11-1 [76.2 kB] Get:1426 http://deb.debian.org/debian/ jessie/main profnet-prof amd64 1.0.22-2 [38.9 kB] Get:1427 http://deb.debian.org/debian/ jessie/main profphd-net amd64 1.0.22-2 [123 kB] Get:1428 http://deb.debian.org/debian/ jessie/main profphd all 1.0.40-1 [4538 kB] Get:1429 http://deb.debian.org/debian/ jessie/main proftmb amd64 1.1.12-2 [396 kB] Get:1430 http://deb.debian.org/debian/ jessie/main reprof all 1.0.1-1 [18.6 kB] Get:1431 http://deb.debian.org/debian/ jessie/main predictprotein all 1.1.06-1 [58.8 kB] Get:1432 http://deb.debian.org/debian/ jessie/main profnet-chop amd64 1.0.22-2 [39.0 kB] Get:1433 http://deb.debian.org/debian/ jessie/main profnet-con amd64 1.0.22-2 [39.1 kB] Get:1434 http://deb.debian.org/debian/ jessie/main profnet-md amd64 1.0.22-2 [39.2 kB] Get:1435 http://deb.debian.org/debian/ jessie/main profnet-snapfun amd64 1.0.22-2 [39.1 kB] Get:1436 http://deb.debian.org/debian/ jessie/main pvm amd64 3.4.5-12.6 [156 kB] Get:1437 http://deb.debian.org/debian/ jessie/main pynast all 1.2.2-1 [81.1 kB] Get:1438 http://deb.debian.org/debian/ jessie/main python-mpi4py amd64 1.3.1+hg20131106-2 [318 kB] Get:1439 http://deb.debian.org/debian/ jessie/main qiime amd64 1.8.0+dfsg-4 [926 kB] Get:1440 http://deb.debian.org/debian/ jessie/main ray amd64 2.3.1-1 [601 kB] Get:1441 http://deb.debian.org/debian/ jessie/main science-tasks all 1.4 [18.4 kB] Get:1442 http://deb.debian.org/debian/ jessie/main science-config all 1.4 [13.9 kB] Get:1443 http://deb.debian.org/debian/ jessie/main science-biology all 1.4 [11.5 kB] Get:1444 http://deb.debian.org/debian/ jessie/main snap amd64 2013-11-29-1 [372 kB] Get:1445 http://deb.debian.org/debian/ jessie/main vcftools amd64 0.1.12+dfsg-1 [380 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2091 MB in 52s (39.6 MB/s) Selecting previously unselected package libboost-iostreams1.55.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../libboost-iostreams1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-iostreams1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libgdbm3:amd64. Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-13.1) ... Selecting previously unselected package libjson-c2:amd64. Preparing to unpack .../libjson-c2_0.11-4_amd64.deb ... Unpacking libjson-c2:amd64 (0.11-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.0-1) ... Selecting previously unselected package libpopt0:amd64. Preparing to unpack .../libpopt0_1.16-10_amd64.deb ... Unpacking libpopt0:amd64 (1.16-10) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-8_amd64.deb ... Unpacking groff-base (1.22.2-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6_amd64.deb ... Unpacking bsdmainutils (9.0.6) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.0.2-5_amd64.deb ... Unpacking man-db (2.7.0.2-5) ... Selecting previously unselected package tasksel-data. Preparing to unpack .../tasksel-data_3.31+deb8u1_all.deb ... Unpacking tasksel-data (3.31+deb8u1) ... Selecting previously unselected package tasksel. Preparing to unpack .../tasksel_3.31+deb8u1_all.deb ... Unpacking tasksel (3.31+deb8u1) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.19.3-2_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.19.3-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20140620-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20140620-2) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libnettle4:amd64. Preparing to unpack .../libnettle4_2.7.1-5+deb8u2_amd64.deb ... Unpacking libnettle4:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libhogweed2:amd64. Preparing to unpack .../libhogweed2_2.7.1-5+deb8u2_amd64.deb ... Unpacking libhogweed2:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+deb8u1_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+deb8u1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.20.7-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.20.7-1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.2-3+deb8u3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.2-3+deb8u3) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.8-6+deb8u7_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-5+b1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-5+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-19+deb8u4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.29-1+deb8u2_amd64.deb ... Unpacking libidn11:amd64 (1.29-1+deb8u2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.40+dfsg-1+deb8u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.22+15-2+deb8u4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libwrap0:amd64. Preparing to unpack .../libwrap0_7.6.q-25_amd64.deb ... Unpacking libwrap0:amd64 (7.6.q-25) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u6_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Selecting previously unselected package perl-modules. Preparing to unpack .../perl-modules_5.20.2-3+deb8u11_all.deb ... Unpacking perl-modules (5.20.2-3+deb8u11) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl (5.20.2-3+deb8u11) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../libpython2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7-minimal (2.7.9-2+deb8u1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.9-1_amd64.deb ... Unpacking python-minimal (2.7.9-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.58_all.deb ... Unpacking mime-support (3.58) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../libpython2.7-stdlib_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7 (2.7.9-2+deb8u1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../libpython-stdlib_2.7.9-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.9-1) ... Setting up libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7-minimal (2.7.9-2+deb8u1) ... Setting up python-minimal (2.7.9-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10422 files and directories currently installed.) Preparing to unpack .../python_2.7.9-1_amd64.deb ... Unpacking python (2.7.9-1) ... Selecting previously unselected package libapr1:amd64. Preparing to unpack .../libapr1_1.5.1-3_amd64.deb ... Unpacking libapr1:amd64 (1.5.1-3) ... Selecting previously unselected package libaprutil1:amd64. Preparing to unpack .../libaprutil1_1.5.4-1_amd64.deb ... Unpacking libaprutil1:amd64 (1.5.4-1) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:amd64. Preparing to unpack .../libaprutil1-dbd-sqlite3_1.5.4-1_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Selecting previously unselected package libaprutil1-ldap:amd64. Preparing to unpack .../libaprutil1-ldap_1.5.4-1_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.5.4-1) ... Selecting previously unselected package liblua5.1-0:amd64. Preparing to unpack .../liblua5.1-0_5.1.5-7.1_amd64.deb ... Unpacking liblua5.1-0:amd64 (5.1.5-7.1) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../apache2-bin_2.4.10-10+deb8u12_amd64.deb ... Unpacking apache2-bin (2.4.10-10+deb8u12) ... Selecting previously unselected package apache2-utils. Preparing to unpack .../apache2-utils_2.4.10-10+deb8u12_amd64.deb ... Unpacking apache2-utils (2.4.10-10+deb8u12) ... Selecting previously unselected package apache2-data. Preparing to unpack .../apache2-data_2.4.10-10+deb8u12_all.deb ... Unpacking apache2-data (2.4.10-10+deb8u12) ... Selecting previously unselected package apache2. Preparing to unpack .../apache2_2.4.10-10+deb8u12_amd64.deb ... Unpacking apache2 (2.4.10-10+deb8u12) ... Selecting previously unselected package fonts-circos-symbols. Preparing to unpack .../fonts-circos-symbols_0.66-1_all.deb ... Unpacking fonts-circos-symbols (0.66-1) ... Selecting previously unselected package fonts-cmu. Preparing to unpack .../fonts-cmu_0.7.0-3_all.deb ... Unpacking fonts-cmu (0.7.0-3) ... Selecting previously unselected package libregexp-common-perl. Preparing to unpack .../libregexp-common-perl_2013031301-1_all.deb ... Unpacking libregexp-common-perl (2013031301-1) ... Selecting previously unselected package libcarp-always-perl. Preparing to unpack .../libcarp-always-perl_0.12-1_all.deb ... Unpacking libcarp-always-perl (0.12-1) ... Selecting previously unselected package libconfig-general-perl. Preparing to unpack .../libconfig-general-perl_2.56-1_all.deb ... Unpacking libconfig-general-perl (2.56-1) ... Selecting previously unselected package libdata-dumper-simple-perl. Preparing to unpack .../libdata-dumper-simple-perl_0.11-4_all.deb ... Unpacking libdata-dumper-simple-perl (0.11-4) ... Selecting previously unselected package libpng12-0:amd64. Preparing to unpack .../libpng12-0_1.2.50-2+deb8u3_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.50-2+deb8u3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.5.2-3+deb8u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u2) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.34-1_all.deb ... Unpacking fonts-dejavu-core (2.34-1) ... Selecting previously unselected package fonts-liberation. Preparing to unpack .../fonts-liberation_1.07.4-1_all.deb ... Unpacking fonts-liberation (1.07.4-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.0-6.3+deb8u1_all.deb ... Unpacking fontconfig-config (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.3.1-12) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../libtiff5_4.0.3-12.3+deb8u5_amd64.deb ... Unpacking libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Selecting previously unselected package libvpx1:amd64. Preparing to unpack .../libvpx1_1.3.0-3+deb8u1_amd64.deb ... Unpacking libvpx1:amd64 (1.3.0-3+deb8u1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-3+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.10-3+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-3+deb8u1_all.deb ... Unpacking libx11-data (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.2-3+deb8u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../libxpm4_1%3a3.5.12-0+deb8u1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Selecting previously unselected package libgd3:amd64. Preparing to unpack .../libgd3_2.1.0-5+deb8u11_amd64.deb ... Unpacking libgd3:amd64 (2.1.0-5+deb8u11) ... Selecting previously unselected package libgd-perl. Preparing to unpack .../libgd-perl_2.53-1+b1_amd64.deb ... Unpacking libgd-perl (2.53-1+b1) ... Selecting previously unselected package libgetopt-simple-perl. Preparing to unpack .../libgetopt-simple-perl_1.52-4_all.deb ... Unpacking libgetopt-simple-perl (1.52-4) ... Selecting previously unselected package libmath-bezier-perl. Preparing to unpack .../libmath-bezier-perl_0.01-1_all.deb ... Unpacking libmath-bezier-perl (0.01-1) ... Selecting previously unselected package libmath-round-perl. Preparing to unpack .../libmath-round-perl_0.06-4_all.deb ... Unpacking libmath-round-perl (0.06-4) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../libparams-classify-perl_0.013-4+b2_amd64.deb ... Unpacking libparams-classify-perl (0.013-4+b2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../libmodule-runtime-perl_0.014-1_all.deb ... Unpacking libmodule-runtime-perl (0.014-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../libtry-tiny-perl_0.22-1_all.deb ... Unpacking libtry-tiny-perl (0.22-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../libmodule-implementation-perl_0.09-1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1) ... Selecting previously unselected package libparams-validate-perl. Preparing to unpack .../libparams-validate-perl_1.13-1+b1_amd64.deb ... Unpacking libparams-validate-perl (1.13-1+b1) ... Selecting previously unselected package libreadonly-perl. Preparing to unpack .../libreadonly-perl_2.000-1_all.deb ... Unpacking libreadonly-perl (2.000-1) ... Selecting previously unselected package libset-intspan-perl. Preparing to unpack .../libset-intspan-perl_1.19-1_all.deb ... Unpacking libset-intspan-perl (1.19-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../liblist-moreutils-perl_0.33-2+b1_amd64.deb ... Unpacking liblist-moreutils-perl (0.33-2+b1) ... Selecting previously unselected package liblist-allutils-perl. Preparing to unpack .../liblist-allutils-perl_0.09-1_all.deb ... Unpacking liblist-allutils-perl (0.09-1) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../libfile-basedir-perl_0.03-1_all.deb ... Unpacking libfile-basedir-perl (0.03-1) ... Selecting previously unselected package libmath-vec-perl. Preparing to unpack .../libmath-vec-perl_1.01-2_all.deb ... Unpacking libmath-vec-perl (1.01-2) ... Selecting previously unselected package libspiffy-perl. Preparing to unpack .../libspiffy-perl_0.41-1_all.deb ... Unpacking libspiffy-perl (0.41-1) ... Selecting previously unselected package libio-all-perl. Preparing to unpack .../libio-all-perl_0.79-1_all.deb ... Unpacking libio-all-perl (0.79-1) ... Selecting previously unselected package libmath-vecstat-perl. Preparing to unpack .../libmath-vecstat-perl_0.08-1_all.deb ... Unpacking libmath-vecstat-perl (0.08-1) ... Selecting previously unselected package libgraphics-colornames-perl. Preparing to unpack .../libgraphics-colornames-perl_2.11-6_all.deb ... Unpacking libgraphics-colornames-perl (2.11-6) ... Selecting previously unselected package libgraphics-colorobject-perl. Preparing to unpack .../libgraphics-colorobject-perl_0.5.0-6_all.deb ... Unpacking libgraphics-colorobject-perl (0.5.0-6) ... Selecting previously unselected package libtext-format-perl. Preparing to unpack .../libtext-format-perl_0.59-1_all.deb ... Unpacking libtext-format-perl (0.59-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../libfont-ttf-perl_1.04-1_all.deb ... Unpacking libfont-ttf-perl (1.04-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../libclone-perl_0.37-1+b1_amd64.deb ... Unpacking libclone-perl (0.37-1+b1) ... Selecting previously unselected package circos. Preparing to unpack .../archives/circos_0.66-1_all.deb ... Unpacking circos (0.66-1) ... Selecting previously unselected package circos-tools. Preparing to unpack .../circos-tools_0.18-1_all.deb ... Unpacking circos-tools (0.18-1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../fontconfig_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking fontconfig (2.11.0-6.3+deb8u1) ... Selecting previously unselected package fonts-droid. Preparing to unpack .../fonts-droid_1%3a4.4.4r2-6_all.deb ... Unpacking fonts-droid (1:4.4.4r2-6) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../fonts-lato_2.0-1_all.deb ... Unpacking fonts-lato (2.0-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../libdrm2_2.4.58-2_amd64.deb ... Unpacking libdrm2:amd64 (2.4.58-2) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../libglapi-mesa_10.3.2-1+deb8u1_amd64.deb ... Unpacking libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../libx11-xcb1_2%3a1.6.2-3+deb8u1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../libxcb-dri2-0_1.10-3+b1_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../libxcb-dri3-0_1.10-3+b1_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxcb-glx0:amd64. Preparing to unpack .../libxcb-glx0_1.10-3+b1_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../libxcb-present0_1.10-3+b1_amd64.deb ... Unpacking libxcb-present0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxcb-sync1:amd64. Preparing to unpack .../libxcb-sync1_1.10-3+b1_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.10-3+b1) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../libxfixes3_1%3a5.0.1-2+deb8u1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Selecting previously unselected package libxdamage1:amd64. Preparing to unpack .../libxdamage1_1%3a1.1.4-2+b1_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-2+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../libxshmfence1_1.1-4_amd64.deb ... Unpacking libxshmfence1:amd64 (1.1-4) ... Selecting previously unselected package libxxf86vm1:amd64. Preparing to unpack .../libxxf86vm1_1%3a1.1.3-1+b1_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Selecting previously unselected package libgl1-mesa-glx:amd64. Preparing to unpack .../libgl1-mesa-glx_10.3.2-1+deb8u1_amd64.deb ... Unpacking libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../libxi6_2%3a1.7.4-1+deb8u1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.4-1+deb8u1) ... Selecting previously unselected package freeglut3:amd64. Preparing to unpack .../freeglut3_2.8.1-2_amd64.deb ... Unpacking freeglut3:amd64 (2.8.1-2) ... Selecting previously unselected package libmpfr4:amd64. Preparing to unpack .../libmpfr4_3.1.2-2_amd64.deb ... Unpacking libmpfr4:amd64 (3.1.2-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-4+b1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-4+b1) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libmpfr4:amd64 (3.1.2-2) ... Setting up libsigsegv2:amd64 (2.10-4+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13016 files and directories currently installed.) Preparing to unpack .../gawk_1%3a4.1.1+dfsg-1_amd64.deb ... Unpacking gawk (1:4.1.1+dfsg-1) ... Selecting previously unselected package imagemagick-common. Preparing to unpack .../imagemagick-common_8%3a6.8.9.9-5+deb8u12_all.deb ... Unpacking imagemagick-common (8:6.8.9.9-5+deb8u12) ... Selecting previously unselected package libamd2.3.1:amd64. Preparing to unpack .../libamd2.3.1_1%3a4.2.1-3_amd64.deb ... Unpacking libamd2.3.1:amd64 (1:4.2.1-3) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../liblzo2-2_2.08-1.2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.08-1.2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../libarchive13_3.1.2-11+deb8u3_amd64.deb ... Unpacking libarchive13:amd64 (3.1.2-11+deb8u3) ... Selecting previously unselected package libart-2.0-2:amd64. Preparing to unpack .../libart-2.0-2_2.3.21-2_amd64.deb ... Unpacking libart-2.0-2:amd64 (2.3.21-2) ... Selecting previously unselected package libasan1:amd64. Preparing to unpack .../libasan1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libasan1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../libasound2-data_1.0.28-1_all.deb ... Unpacking libasound2-data (1.0.28-1) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../libasound2_1.0.28-1_amd64.deb ... Unpacking libasound2:amd64 (1.0.28-1) ... Selecting previously unselected package libaspell15:amd64. Preparing to unpack .../libaspell15_0.60.7~20110707-1.3_amd64.deb ... Unpacking libaspell15:amd64 (0.60.7~20110707-1.3) ... Selecting previously unselected package libasyncns0:amd64. Preparing to unpack .../libasyncns0_0.8-5_amd64.deb ... Unpacking libasyncns0:amd64 (0.8-5) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.42.1-1+b1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.42.1-1+b1) ... Selecting previously unselected package libatk1.0-data. Preparing to unpack .../libatk1.0-data_2.14.0-1_all.deb ... Unpacking libatk1.0-data (2.14.0-1) ... Selecting previously unselected package libatk1.0-0:amd64. Preparing to unpack .../libatk1.0-0_2.14.0-1_amd64.deb ... Unpacking libatk1.0-0:amd64 (2.14.0-1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../libdbus-1-3_1.8.22-0+deb8u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Selecting previously unselected package libatspi2.0-0:amd64. Preparing to unpack .../libatspi2.0-0_2.14.0-1_amd64.deb ... Unpacking libatspi2.0-0:amd64 (2.14.0-1) ... Selecting previously unselected package libatk-bridge2.0-0:amd64. Preparing to unpack .../libatk-bridge2.0-0_2.14.0-2_amd64.deb ... Unpacking libatk-bridge2.0-0:amd64 (2.14.0-2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../libpixman-1-0_0.32.6-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.32.6-3) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../libxcb-render0_1.10-3+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../libxcb-shm0_1.10-3+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../libxrender1_1%3a0.9.8-1+b1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.8-1+b1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../libcairo2_1.14.0-2.1+deb8u2_amd64.deb ... Unpacking libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Selecting previously unselected package libjasper1:amd64. Preparing to unpack .../libjasper1_1.900.1-debian1-2.4+deb8u3_amd64.deb ... Unpacking libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../libgdk-pixbuf2.0-common_2.31.1-2+deb8u7_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.31.1-2+deb8u7) ... Selecting previously unselected package libgdk-pixbuf2.0-0:amd64. Preparing to unpack .../libgdk-pixbuf2.0-0_2.31.1-2+deb8u7_amd64.deb ... Unpacking libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Selecting previously unselected package libgtk2.0-common. Preparing to unpack .../libgtk2.0-common_2.24.25-3+deb8u2_all.deb ... Unpacking libgtk2.0-common (2.24.25-3+deb8u2) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../libavahi-common-data_0.6.31-5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.31-5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../libavahi-common3_0.6.31-5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.31-5) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../libavahi-client3_0.6.31-5_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.31-5) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../libcups2_1.7.5-11+deb8u2_amd64.deb ... Unpacking libcups2:amd64 (1.7.5-11+deb8u2) ... Selecting previously unselected package libthai-data. Preparing to unpack .../libthai-data_0.1.21-1_all.deb ... Unpacking libthai-data (0.1.21-1) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../libdatrie1_0.2.8-1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.8-1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../libthai0_0.1.21-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.21-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../libpango-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../libgraphite2-3_1.3.10-1~deb8u1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../libharfbuzz0b_0.9.35-2_amd64.deb ... Unpacking libharfbuzz0b:amd64 (0.9.35-2) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../libpangoft2-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../libpangocairo-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libxcomposite1:amd64. Preparing to unpack .../libxcomposite1_1%3a0.4.4-1_amd64.deb ... Unpacking libxcomposite1:amd64 (1:0.4.4-1) ... Selecting previously unselected package libxcursor1:amd64. Preparing to unpack .../libxcursor1_1%3a1.1.14-1+deb8u1_amd64.deb ... Unpacking libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Selecting previously unselected package libxinerama1:amd64. Preparing to unpack .../libxinerama1_2%3a1.1.3-1+b1_amd64.deb ... Unpacking libxinerama1:amd64 (2:1.1.3-1+b1) ... Selecting previously unselected package libxrandr2:amd64. Preparing to unpack .../libxrandr2_2%3a1.4.2-1+deb8u1_amd64.deb ... Unpacking libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../shared-mime-info_1.3-1_amd64.deb ... Unpacking shared-mime-info (1.3-1) ... Selecting previously unselected package libgtk2.0-0:amd64. Preparing to unpack .../libgtk2.0-0_2.24.25-3+deb8u2_amd64.deb ... Unpacking libgtk2.0-0:amd64 (2.24.25-3+deb8u2) ... Selecting previously unselected package libatk-wrapper-java. Preparing to unpack .../libatk-wrapper-java_0.30.5-1_all.deb ... Unpacking libatk-wrapper-java (0.30.5-1) ... Selecting previously unselected package libatk-wrapper-java-jni:amd64. Preparing to unpack .../libatk-wrapper-java-jni_0.30.5-1_amd64.deb ... Unpacking libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Selecting previously unselected package libatm1:amd64. Preparing to unpack .../libatm1_1%3a2.5.1-1.5_amd64.deb ... Unpacking libatm1:amd64 (1:2.5.1-1.5) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../libatomic1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libatomic1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+7_all.deb ... Unpacking x11-common (1:7.7+7) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../libice6_2%3a1.0.9-1+b1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+b1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.4-1+b1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.4-1+b1) ... Selecting previously unselected package libaudio2:amd64. Preparing to unpack .../libaudio2_1.9.4-3_amd64.deb ... Unpacking libaudio2:amd64 (1.9.4-3) ... Selecting previously unselected package libboost-system1.55.0:amd64. Preparing to unpack .../libboost-system1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-system1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libboost-chrono1.55.0:amd64. Preparing to unpack .../libboost-chrono1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-chrono1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libboost-date-time1.55.0:amd64. Preparing to unpack .../libboost-date-time1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-date-time1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libboost-filesystem1.55.0:amd64. Preparing to unpack .../libboost-filesystem1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-filesystem1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libboost-math1.55.0:amd64. Preparing to unpack .../libboost-math1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-math1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libboost-serialization1.55.0:amd64. Preparing to unpack .../libboost-serialization1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-serialization1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../libltdl7_2.4.2-1.11+b1_amd64.deb ... Unpacking libltdl7:amd64 (2.4.2-1.11+b1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../libnuma1_2.0.10-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.10-1) ... Selecting previously unselected package libhwloc5:amd64. Preparing to unpack .../libhwloc5_1.10.0-3_amd64.deb ... Unpacking libhwloc5:amd64 (1.10.0-3) ... Selecting previously unselected package libcr0. Preparing to unpack .../libcr0_0.8.5-2.2_amd64.deb ... Unpacking libcr0 (0.8.5-2.2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_4.9.2-10+deb8u1_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../libibverbs1_1.1.8-1.1_amd64.deb ... Unpacking libibverbs1 (1.1.8-1.1) ... Selecting previously unselected package libopenmpi1.6. Preparing to unpack .../libopenmpi1.6_1.6.5-9.1+deb8u1_amd64.deb ... Unpacking libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Selecting previously unselected package libboost-mpi1.55.0. Preparing to unpack .../libboost-mpi1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-mpi1.55.0 (1.55.0+dfsg-3) ... Selecting previously unselected package libboost-program-options1.55.0:amd64. Preparing to unpack .../libboost-program-options1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libboost-random1.55.0:amd64. Preparing to unpack .../libboost-random1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-random1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libicu52:amd64. Preparing to unpack .../libicu52_52.1-8+deb8u7_amd64.deb ... Unpacking libicu52:amd64 (52.1-8+deb8u7) ... Selecting previously unselected package libboost-regex1.55.0:amd64. Preparing to unpack .../libboost-regex1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-regex1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libboost-thread1.55.0:amd64. Preparing to unpack .../libboost-thread1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-thread1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libboost-timer1.55.0:amd64. Preparing to unpack .../libboost-timer1.55.0_1.55.0+dfsg-3_amd64.deb ... Unpacking libboost-timer1.55.0:amd64 (1.55.0+dfsg-3) ... Selecting previously unselected package libcaca0:amd64. Preparing to unpack .../libcaca0_0.99.beta19-2_amd64.deb ... Unpacking libcaca0:amd64 (0.99.beta19-2) ... Selecting previously unselected package libcairo-gobject2:amd64. Preparing to unpack .../libcairo-gobject2_1.14.0-2.1+deb8u2_amd64.deb ... Unpacking libcairo-gobject2:amd64 (1.14.0-2.1+deb8u2) ... Selecting previously unselected package libogg0:amd64. Preparing to unpack .../libogg0_1.3.2-1_amd64.deb ... Unpacking libogg0:amd64 (1.3.2-1) ... Selecting previously unselected package libtdb1:amd64. Preparing to unpack .../libtdb1_1.3.6-0+deb8u1_amd64.deb ... Unpacking libtdb1:amd64 (1.3.6-0+deb8u1) ... Selecting previously unselected package libvorbis0a:amd64. Preparing to unpack .../libvorbis0a_1.3.4-2+deb8u1_amd64.deb ... Unpacking libvorbis0a:amd64 (1.3.4-2+deb8u1) ... Selecting previously unselected package libvorbisfile3:amd64. Preparing to unpack .../libvorbisfile3_1.3.4-2+deb8u1_amd64.deb ... Unpacking libvorbisfile3:amd64 (1.3.4-2+deb8u1) ... Selecting previously unselected package libcanberra0:amd64. Preparing to unpack .../libcanberra0_0.30-2.1_amd64.deb ... Unpacking libcanberra0:amd64 (0.30-2.1) ... Selecting previously unselected package libdconf1:amd64. Preparing to unpack .../libdconf1_0.22.0-1_amd64.deb ... Unpacking libdconf1:amd64 (0.22.0-1) ... Selecting previously unselected package dconf-service. Preparing to unpack .../dconf-service_0.22.0-1_amd64.deb ... Unpacking dconf-service (0.22.0-1) ... Selecting previously unselected package dconf-gsettings-backend:amd64. Preparing to unpack .../dconf-gsettings-backend_0.22.0-1_amd64.deb ... Unpacking dconf-gsettings-backend:amd64 (0.22.0-1) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../hicolor-icon-theme_0.13-1_all.deb ... Unpacking hicolor-icon-theme (0.13-1) ... Selecting previously unselected package libwayland-client0:amd64. Preparing to unpack .../libwayland-client0_1.6.0-2_amd64.deb ... Unpacking libwayland-client0:amd64 (1.6.0-2) ... Selecting previously unselected package libwayland-cursor0:amd64. Preparing to unpack .../libwayland-cursor0_1.6.0-2_amd64.deb ... Unpacking libwayland-cursor0:amd64 (1.6.0-2) ... Selecting previously unselected package xkb-data. Preparing to unpack .../xkb-data_2.12-1_all.deb ... Unpacking xkb-data (2.12-1) ... Selecting previously unselected package libxkbcommon0:amd64. Preparing to unpack .../libxkbcommon0_0.4.3-2_amd64.deb ... Unpacking libxkbcommon0:amd64 (0.4.3-2) ... Selecting previously unselected package libgtk-3-bin. Preparing to unpack .../libgtk-3-bin_3.14.5-1+deb8u1_amd64.deb ... Adding 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin' Adding 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin' Unpacking libgtk-3-bin (3.14.5-1+deb8u1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.8-3+b1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.8-3+b1) ... Selecting previously unselected package librsvg2-2:amd64. Preparing to unpack .../librsvg2-2_2.40.5-1+deb8u2_amd64.deb ... Unpacking librsvg2-2:amd64 (2.40.5-1+deb8u2) ... Selecting previously unselected package librsvg2-common:amd64. Preparing to unpack .../librsvg2-common_2.40.5-1+deb8u2_amd64.deb ... Unpacking librsvg2-common:amd64 (2.40.5-1+deb8u2) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../adwaita-icon-theme_3.14.0-2_all.deb ... Unpacking adwaita-icon-theme (3.14.0-2) ... Selecting previously unselected package libgtk-3-common. Preparing to unpack .../libgtk-3-common_3.14.5-1+deb8u1_all.deb ... Unpacking libgtk-3-common (3.14.5-1+deb8u1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../liblcms2-2_2.6-3+deb8u1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.6-3+deb8u1) ... Selecting previously unselected package libcolord2:amd64. Preparing to unpack .../libcolord2_1.2.1-1+b2_amd64.deb ... Unpacking libcolord2:amd64 (1.2.1-1+b2) ... Selecting previously unselected package libjson-glib-1.0-common. Preparing to unpack .../libjson-glib-1.0-common_1.0.2-1_all.deb ... Unpacking libjson-glib-1.0-common (1.0.2-1) ... Selecting previously unselected package libjson-glib-1.0-0:amd64. Preparing to unpack .../libjson-glib-1.0-0_1.0.2-1_amd64.deb ... Unpacking libjson-glib-1.0-0:amd64 (1.0.2-1) ... Selecting previously unselected package libproxy1:amd64. Preparing to unpack .../libproxy1_0.4.11-4+b2_amd64.deb ... Unpacking libproxy1:amd64 (0.4.11-4+b2) ... Selecting previously unselected package glib-networking-common. Preparing to unpack .../glib-networking-common_2.42.0-2_all.deb ... Unpacking glib-networking-common (2.42.0-2) ... Selecting previously unselected package glib-networking-services. Preparing to unpack .../glib-networking-services_2.42.0-2_amd64.deb ... Unpacking glib-networking-services (2.42.0-2) ... Selecting previously unselected package gsettings-desktop-schemas. Preparing to unpack .../gsettings-desktop-schemas_3.14.1-1_all.deb ... Unpacking gsettings-desktop-schemas (3.14.1-1) ... Selecting previously unselected package glib-networking:amd64. Preparing to unpack .../glib-networking_2.42.0-2_amd64.deb ... Unpacking glib-networking:amd64 (2.42.0-2) ... Selecting previously unselected package libsoup2.4-1:amd64. Preparing to unpack .../libsoup2.4-1_2.48.0-1+deb8u1_amd64.deb ... Unpacking libsoup2.4-1:amd64 (2.48.0-1+deb8u1) ... Selecting previously unselected package libsoup-gnome2.4-1:amd64. Preparing to unpack .../libsoup-gnome2.4-1_2.48.0-1+deb8u1_amd64.deb ... Unpacking libsoup-gnome2.4-1:amd64 (2.48.0-1+deb8u1) ... Selecting previously unselected package librest-0.7-0:amd64. Preparing to unpack .../librest-0.7-0_0.7.92-3_amd64.deb ... Unpacking librest-0.7-0:amd64 (0.7.92-3) ... Selecting previously unselected package libgtk-3-0:amd64. Preparing to unpack .../libgtk-3-0_3.14.5-1+deb8u1_amd64.deb ... Unpacking libgtk-3-0:amd64 (3.14.5-1+deb8u1) ... Selecting previously unselected package libcanberra-gtk3-0:amd64. Preparing to unpack .../libcanberra-gtk3-0_0.30-2.1_amd64.deb ... Unpacking libcanberra-gtk3-0:amd64 (0.30-2.1) ... Selecting previously unselected package libcap-ng0:amd64. Preparing to unpack .../libcap-ng0_0.7.4-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.4-2) ... Selecting previously unselected package libcdparanoia0:amd64. Preparing to unpack .../libcdparanoia0_3.10.2+debian-11_amd64.deb ... Unpacking libcdparanoia0:amd64 (3.10.2+debian-11) ... Selecting previously unselected package libcfitsio2:amd64. Preparing to unpack .../libcfitsio2_3.370-2+deb8u1_amd64.deb ... Unpacking libcfitsio2:amd64 (3.370-2+deb8u1) ... Selecting previously unselected package libcilkrts5:amd64. Preparing to unpack .../libcilkrts5_4.9.2-10+deb8u1_amd64.deb ... Unpacking libcilkrts5:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libisl10:amd64. Preparing to unpack .../libisl10_0.12.2-2_amd64.deb ... Unpacking libisl10:amd64 (0.12.2-2) ... Selecting previously unselected package libcloog-isl4:amd64. Preparing to unpack .../libcloog-isl4_0.18.2-1+b2_amd64.deb ... Unpacking libcloog-isl4:amd64 (0.18.2-1+b2) ... Selecting previously unselected package libcolamd2.8.0:amd64. Preparing to unpack .../libcolamd2.8.0_1%3a4.2.1-3_amd64.deb ... Unpacking libcolamd2.8.0:amd64 (1:4.2.1-3) ... Selecting previously unselected package libgudev-1.0-0:amd64. Preparing to unpack .../libgudev-1.0-0_215-17+deb8u7_amd64.deb ... Unpacking libgudev-1.0-0:amd64 (215-17+deb8u7) ... Selecting previously unselected package libusb-1.0-0:amd64. Preparing to unpack .../libusb-1.0-0_2%3a1.0.19-1_amd64.deb ... Unpacking libusb-1.0-0:amd64 (2:1.0.19-1) ... Selecting previously unselected package libgusb2:amd64. Preparing to unpack .../libgusb2_0.1.6-5_amd64.deb ... Unpacking libgusb2:amd64 (0.1.6-5) ... Selecting previously unselected package libcolorhug2:amd64. Preparing to unpack .../libcolorhug2_1.2.1-1+b2_amd64.deb ... Unpacking libcolorhug2:amd64 (1.2.1-1+b2) ... Selecting previously unselected package libcupsimage2:amd64. Preparing to unpack .../libcupsimage2_1.7.5-11+deb8u2_amd64.deb ... Unpacking libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Selecting previously unselected package libcupsfilters1:amd64. Preparing to unpack .../libcupsfilters1_1.0.61-5+deb8u3_amd64.deb ... Unpacking libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../librtmp1_2.4+20150115.gita107cef-1+deb8u1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../libssh2-1_1.4.3-4.1+deb8u1_amd64.deb ... Unpacking libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Selecting previously unselected package libcurl3:amd64. Preparing to unpack .../libcurl3_7.38.0-4+deb8u11_amd64.deb ... Unpacking libcurl3:amd64 (7.38.0-4+deb8u11) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../libcurl3-gnutls_7.38.0-4+deb8u11_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Selecting previously unselected package libdirectfb-1.2-9:amd64. Preparing to unpack .../libdirectfb-1.2-9_1.2.10.0-5.1_amd64.deb ... Unpacking libdirectfb-1.2-9:amd64 (1.2.10.0-5.1) ... Selecting previously unselected package libdjvulibre-text. Preparing to unpack .../libdjvulibre-text_3.5.25.4-4_all.deb ... Unpacking libdjvulibre-text (3.5.25.4-4) ... Selecting previously unselected package libdjvulibre21:amd64. Preparing to unpack .../libdjvulibre21_3.5.25.4-4+b1_amd64.deb ... Unpacking libdjvulibre21:amd64 (3.5.25.4-4+b1) ... Selecting previously unselected package libisc-export95. Preparing to unpack .../libisc-export95_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libdns-export100. Preparing to unpack .../libdns-export100_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../libpciaccess0_0.13.2-3+b1_amd64.deb ... Unpacking libpciaccess0:amd64 (0.13.2-3+b1) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../libdrm-intel1_2.4.58-2_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.58-2) ... Selecting previously unselected package libdrm-nouveau2:amd64. Preparing to unpack .../libdrm-nouveau2_2.4.58-2_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.58-2) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../libdrm-radeon1_2.4.58-2_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.58-2) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../libelf1_0.159-4.2_amd64.deb ... Unpacking libelf1:amd64 (0.159-4.2) ... Selecting previously unselected package libelfg0:amd64. Preparing to unpack .../libelfg0_0.8.13-5_amd64.deb ... Unpacking libelfg0:amd64 (0.8.13-5) ... Selecting previously unselected package libexif12:amd64. Preparing to unpack .../libexif12_0.6.21-2_amd64.deb ... Unpacking libexif12:amd64 (0.6.21-2) ... Selecting previously unselected package libfann2:amd64. Preparing to unpack .../libfann2_2.1.0~beta+dfsg-1_amd64.deb ... Unpacking libfann2:amd64 (2.1.0~beta+dfsg-1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgomp1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../libfftw3-double3_3.3.4-2_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.4-2) ... Selecting previously unselected package libfftw3-single3:amd64. Preparing to unpack .../libfftw3-single3_3.3.4-2_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.4-2) ... Selecting previously unselected package libflac8:amd64. Preparing to unpack .../libflac8_1.3.0-3_amd64.deb ... Unpacking libflac8:amd64 (1.3.0-3) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../libxft2_2.3.2-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1) ... Selecting previously unselected package libfltk1.3:amd64. Preparing to unpack .../libfltk1.3_1.3.2-6+b1_amd64.deb ... Unpacking libfltk1.3:amd64 (1.3.2-6+b1) ... Selecting previously unselected package libfltk-images1.3:amd64. Preparing to unpack .../libfltk-images1.3_1.3.2-6+b1_amd64.deb ... Unpacking libfltk-images1.3:amd64 (1.3.2-6+b1) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../libfontenc1_1%3a1.1.2-1+b2_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.2-1+b2) ... Selecting previously unselected package libglu1-mesa:amd64. Preparing to unpack .../libglu1-mesa_9.0.0-2_amd64.deb ... Unpacking libglu1-mesa:amd64 (9.0.0-2) ... Selecting previously unselected package libftgl2:amd64. Preparing to unpack .../libftgl2_2.1.3~rc5-4+nmu1_amd64.deb ... Unpacking libftgl2:amd64 (2.1.3~rc5-4+nmu1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2+b1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2+b1) ... Selecting previously unselected package libgettextpo0:amd64. Preparing to unpack .../libgettextpo0_0.19.3-2_amd64.deb ... Unpacking libgettextpo0:amd64 (0.19.3-2) ... Selecting previously unselected package libgflags2. Preparing to unpack .../libgflags2_2.0-2.1_amd64.deb ... Unpacking libgflags2 (2.0-2.1) ... Selecting previously unselected package libgif4:amd64. Preparing to unpack .../libgif4_4.1.6-11+deb8u1_amd64.deb ... Unpacking libgif4:amd64 (4.1.6-11+deb8u1) ... Selecting previously unselected package libllvm3.5:amd64. Preparing to unpack .../libllvm3.5_1%3a3.5-10_amd64.deb ... Unpacking libllvm3.5:amd64 (1:3.5-10) ... Selecting previously unselected package libgl1-mesa-dri:amd64. Preparing to unpack .../libgl1-mesa-dri_10.3.2-1+deb8u1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Selecting previously unselected package libglade2-0:amd64. Preparing to unpack .../libglade2-0_1%3a2.6.4-2_amd64.deb ... Unpacking libglade2-0:amd64 (1:2.6.4-2) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../libxmu6_2%3a1.1.2-1_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-1) ... Selecting previously unselected package libglew1.10:amd64. Preparing to unpack .../libglew1.10_1.10.0-3_amd64.deb ... Unpacking libglew1.10:amd64 (1.10.0-3) ... Selecting previously unselected package libglpk36:amd64. Preparing to unpack .../libglpk36_4.55-1_amd64.deb ... Unpacking libglpk36:amd64 (4.55-1) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../libgmpxx4ldbl_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libunwind8. Preparing to unpack .../libunwind8_1.1-3.2_amd64.deb ... Unpacking libunwind8 (1.1-3.2) ... Selecting previously unselected package libgoogle-glog0. Preparing to unpack .../libgoogle-glog0_0.3.3-2_amd64.deb ... Unpacking libgoogle-glog0 (0.3.3-2) ... Selecting previously unselected package libgphoto2-port10:amd64. Preparing to unpack .../libgphoto2-port10_2.5.4-1.1+b2_amd64.deb ... Unpacking libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... Selecting previously unselected package libgphoto2-6:amd64. Preparing to unpack .../libgphoto2-6_2.5.4-1.1+b2_amd64.deb ... Unpacking libgphoto2-6:amd64 (2.5.4-1.1+b2) ... Selecting previously unselected package libgstreamer1.0-0:amd64. Preparing to unpack .../libgstreamer1.0-0_1.4.4-2+deb8u1_amd64.deb ... Unpacking libgstreamer1.0-0:amd64 (1.4.4-2+deb8u1) ... Selecting previously unselected package liborc-0.4-0:amd64. Preparing to unpack .../liborc-0.4-0_1%3a0.4.22-1_amd64.deb ... Unpacking liborc-0.4-0:amd64 (1:0.4.22-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../iso-codes_3.57-1_all.deb ... Unpacking iso-codes (3.57-1) ... Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64. Preparing to unpack .../libgstreamer-plugins-base1.0-0_1.4.4-2+deb8u1_amd64.deb ... Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.4.4-2+deb8u1) ... Selecting previously unselected package libharfbuzz-icu0:amd64. Preparing to unpack .../libharfbuzz-icu0_0.9.35-2_amd64.deb ... Unpacking libharfbuzz-icu0:amd64 (0.9.35-2) ... Selecting previously unselected package libhdf5-8:amd64. Preparing to unpack .../libhdf5-8_1.8.13+docs-15+deb8u1_amd64.deb ... Unpacking libhdf5-8:amd64 (1.8.13+docs-15+deb8u1) ... Selecting previously unselected package libieee1284-3:amd64. Preparing to unpack .../libieee1284-3_0.2.11-12_amd64.deb ... Unpacking libieee1284-3:amd64 (0.2.11-12) ... Selecting previously unselected package libijs-0.35:amd64. Preparing to unpack .../libijs-0.35_0.35-10_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-10) ... Selecting previously unselected package libilmbase6:amd64. Preparing to unpack .../libilmbase6_1.0.1-6.1_amd64.deb ... Unpacking libilmbase6:amd64 (1.0.1-6.1) ... Selecting previously unselected package libisccfg-export90. Preparing to unpack .../libisccfg-export90_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libirs-export91. Preparing to unpack .../libirs-export91_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libitm1:amd64. Preparing to unpack .../libitm1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libitm1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package liblqr-1-0:amd64. Preparing to unpack .../liblqr-1-0_0.4.2-2_amd64.deb ... Unpacking liblqr-1-0:amd64 (0.4.2-2) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../liblsan0_4.9.2-10+deb8u1_amd64.deb ... Unpacking liblsan0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libmagickcore-6.q16-2:amd64. Preparing to unpack .../libmagickcore-6.q16-2_8%3a6.8.9.9-5+deb8u12_amd64.deb ... Unpacking libmagickcore-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... Selecting previously unselected package libmagickwand-6.q16-2:amd64. Preparing to unpack .../libmagickwand-6.q16-2_8%3a6.8.9.9-5+deb8u12_amd64.deb ... Unpacking libmagickwand-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... Selecting previously unselected package libmng1:amd64. Preparing to unpack .../libmng1_1.0.10+dfsg-3.1+b3_amd64.deb ... Unpacking libmng1:amd64 (1.0.10+dfsg-3.1+b3) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for udev (215-17+deb8u7) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Processing triggers for systemd (215-17+deb8u7) ... Selecting previously unselected package libmotif-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20434 files and directories currently installed.) Preparing to unpack .../libmotif-common_2.3.4-6+deb8u1_all.deb ... Unpacking libmotif-common (2.3.4-6+deb8u1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.1-1_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.1-1) ... Selecting previously unselected package mysql-common. Preparing to unpack .../mysql-common_5.5.60-0+deb8u1_all.deb ... Unpacking mysql-common (5.5.60-0+deb8u1) ... Selecting previously unselected package libmysqlclient18:amd64. Preparing to unpack .../libmysqlclient18_5.5.60-0+deb8u1_amd64.deb ... Unpacking libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../ncbi-data_6.1.20120620-8_all.deb ... Unpacking ncbi-data (6.1.20120620-8) ... Selecting previously unselected package libncbi6:amd64. Preparing to unpack .../libncbi6_6.1.20120620-8_amd64.deb ... Unpacking libncbi6:amd64 (6.1.20120620-8) ... Selecting previously unselected package libnotify4:amd64. Preparing to unpack .../libnotify4_0.7.6-2_amd64.deb ... Unpacking libnotify4:amd64 (0.7.6-2) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../libnspr4_2%3a4.12-1+debu8u1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.12-1+debu8u1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../libnss3_2%3a3.26-1+debu8u3_amd64.deb ... Unpacking libnss3:amd64 (2:3.26-1+debu8u3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../libobjc4_4.9.2-10+deb8u1_amd64.deb ... Unpacking libobjc4:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libopenexr6:amd64. Preparing to unpack .../libopenexr6_1.6.1-8_amd64.deb ... Unpacking libopenexr6:amd64 (1.6.1-8) ... Selecting previously unselected package libossp-uuid16:amd64. Preparing to unpack .../libossp-uuid16_1.6.2-1.5+b1_amd64.deb ... Unpacking libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Selecting previously unselected package dbus. Preparing to unpack .../dbus_1.8.22-0+deb8u1_amd64.deb ... Unpacking dbus (1.8.22-0+deb8u1) ... Selecting previously unselected package libpam-systemd:amd64. Preparing to unpack .../libpam-systemd_215-17+deb8u7_amd64.deb ... Unpacking libpam-systemd:amd64 (215-17+deb8u7) ... Selecting previously unselected package libpangoxft-1.0-0:amd64. Preparing to unpack .../libpangoxft-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpangoxft-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../libpaper1_1.1.24+nmu4_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu4) ... Selecting previously unselected package libpcrecpp0:amd64. Preparing to unpack .../libpcrecpp0_2%3a8.35-3.3+deb8u4_amd64.deb ... Unpacking libpcrecpp0:amd64 (2:8.35-3.3+deb8u4) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../libpcsclite1_1.8.13-1+deb8u1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Selecting previously unselected package libpolkit-gobject-1-0:amd64. Preparing to unpack .../libpolkit-gobject-1-0_0.105-15~deb8u2_amd64.deb ... Unpacking libpolkit-gobject-1-0:amd64 (0.105-15~deb8u2) ... Selecting previously unselected package libpolkit-agent-1-0:amd64. Preparing to unpack .../libpolkit-agent-1-0_0.105-15~deb8u2_amd64.deb ... Unpacking libpolkit-agent-1-0:amd64 (0.105-15~deb8u2) ... Selecting previously unselected package libpolkit-backend-1-0:amd64. Preparing to unpack .../libpolkit-backend-1-0_0.105-15~deb8u2_amd64.deb ... Unpacking libpolkit-backend-1-0:amd64 (0.105-15~deb8u2) ... Selecting previously unselected package libopenjpeg5:amd64. Preparing to unpack .../libopenjpeg5_1%3a1.5.2-3_amd64.deb ... Unpacking libopenjpeg5:amd64 (1:1.5.2-3) ... Selecting previously unselected package libpoppler46:amd64. Preparing to unpack .../libpoppler46_0.26.5-2+deb8u4_amd64.deb ... Unpacking libpoppler46:amd64 (0.26.5-2+deb8u4) ... Selecting previously unselected package qtcore4-l10n. Preparing to unpack .../qtcore4-l10n_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_all.deb ... Unpacking qtcore4-l10n (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqtcore4:amd64. Preparing to unpack .../libqtcore4_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqtcore4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqt4-xml:amd64. Preparing to unpack .../libqt4-xml_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqt4-xml:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqtgui4:amd64. Preparing to unpack .../libqtgui4_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqtgui4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libpoppler-qt4-4:amd64. Preparing to unpack .../libpoppler-qt4-4_0.26.5-2+deb8u4_amd64.deb ... Unpacking libpoppler-qt4-4:amd64 (0.26.5-2+deb8u4) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../libpq5_9.4.18-0+deb8u1_amd64.deb ... Unpacking libpq5:amd64 (9.4.18-0+deb8u1) ... Selecting previously unselected package libpth20:amd64. Preparing to unpack .../libpth20_2.0.7-20_amd64.deb ... Unpacking libpth20:amd64 (2.0.7-20) ... Selecting previously unselected package libvorbisenc2:amd64. Preparing to unpack .../libvorbisenc2_1.3.4-2+deb8u1_amd64.deb ... Unpacking libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Selecting previously unselected package libsndfile1:amd64. Preparing to unpack .../libsndfile1_1.0.25-9.1+deb8u1_amd64.deb ... Unpacking libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Selecting previously unselected package libxtst6:amd64. Preparing to unpack .../libxtst6_2%3a1.2.2-1+deb8u1_amd64.deb ... Unpacking libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Selecting previously unselected package libpulse0:amd64. Preparing to unpack .../libpulse0_5.0-13_amd64.deb ... Unpacking libpulse0:amd64 (5.0-13) ... Selecting previously unselected package libpython2.7:amd64. Preparing to unpack .../libpython2.7_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../libc-dev-bin_2.19-18+deb8u10_amd64.deb ... Unpacking libc-dev-bin (2.19-18+deb8u10) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../linux-libc-dev_3.16.56-1+deb8u1_amd64.deb ... Unpacking linux-libc-dev:amd64 (3.16.56-1+deb8u1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../libc6-dev_2.19-18+deb8u10_amd64.deb ... Unpacking libc6-dev:amd64 (2.19-18+deb8u10) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../libexpat1-dev_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libpython2.7-dev:amd64. Preparing to unpack .../libpython2.7-dev_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-dev:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package libpython3.4-minimal:amd64. Preparing to unpack .../libpython3.4-minimal_3.4.2-1_amd64.deb ... Unpacking libpython3.4-minimal:amd64 (3.4.2-1) ... Selecting previously unselected package libpython3.4-stdlib:amd64. Preparing to unpack .../libpython3.4-stdlib_3.4.2-1_amd64.deb ... Unpacking libpython3.4-stdlib:amd64 (3.4.2-1) ... Selecting previously unselected package libqtdbus4:amd64. Preparing to unpack .../libqtdbus4_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqtdbus4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqt4-network:amd64. Preparing to unpack .../libqt4-network_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqt4-network:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqt4-opengl:amd64. Preparing to unpack .../libqt4-opengl_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqt4-opengl:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqt4-sql:amd64. Preparing to unpack .../libqt4-sql_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqt4-sql:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqt4-sql-mysql:amd64. Preparing to unpack .../libqt4-sql-mysql_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqt4-sql-mysql:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqt4-svg:amd64. Preparing to unpack .../libqt4-svg_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqt4-svg:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqt4-test:amd64. Preparing to unpack .../libqt4-test_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqt4-test:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqt4-xmlpatterns:amd64. Preparing to unpack .../libqt4-xmlpatterns_4%3a4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1_amd64.deb ... Unpacking libqt4-xmlpatterns:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package libqtwebkit4:amd64. Preparing to unpack .../libqtwebkit4_2.3.4.dfsg-3_amd64.deb ... Unpacking libqtwebkit4:amd64 (2.3.4.dfsg-3) ... Selecting previously unselected package librelion-1.3-1:amd64. Preparing to unpack .../librelion-1.3-1_1.3+dfsg-2_amd64.deb ... Unpacking librelion-1.3-1:amd64 (1.3+dfsg-2) ... Selecting previously unselected package libsane-common. Preparing to unpack .../libsane-common_1.0.24-8+deb8u2_all.deb ... Unpacking libsane-common (1.0.24-8+deb8u2) ... Selecting previously unselected package libv4lconvert0:amd64. Preparing to unpack .../libv4lconvert0_1.6.0-2_amd64.deb ... Unpacking libv4lconvert0:amd64 (1.6.0-2) ... Selecting previously unselected package libv4l-0:amd64. Preparing to unpack .../libv4l-0_1.6.0-2_amd64.deb ... Unpacking libv4l-0:amd64 (1.6.0-2) ... Selecting previously unselected package libsane:amd64. Preparing to unpack .../libsane_1.0.24-8+deb8u2_amd64.deb ... Unpacking libsane:amd64 (1.0.24-8+deb8u2) ... Selecting previously unselected package libsctp1:amd64. Preparing to unpack .../libsctp1_1.0.16+dfsg-2_amd64.deb ... Unpacking libsctp1:amd64 (1.0.16+dfsg-2) ... Selecting previously unselected package libsdl1.2debian:amd64. Preparing to unpack .../libsdl1.2debian_1.2.15-10+b1_amd64.deb ... Unpacking libsdl1.2debian:amd64 (1.2.15-10+b1) ... Selecting previously unselected package libtcl8.5:amd64. Preparing to unpack .../libtcl8.5_8.5.17-1_amd64.deb ... Unpacking libtcl8.5:amd64 (8.5.17-1) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../libtcl8.6_8.6.2+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.2+dfsg-2) ... Selecting previously unselected package libtheora0:amd64. Preparing to unpack .../libtheora0_1.1.1+dfsg.1-6_amd64.deb ... Unpacking libtheora0:amd64 (1.1.1+dfsg.1-6) ... Selecting previously unselected package libtinyxml2.6.2:amd64. Preparing to unpack .../libtinyxml2.6.2_2.6.2-2_amd64.deb ... Unpacking libtinyxml2.6.2:amd64 (2.6.2-2) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../libxss1_1%3a1.2.2-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.2-1) ... Selecting previously unselected package libtk8.5:amd64. Preparing to unpack .../libtk8.5_8.5.17-1_amd64.deb ... Unpacking libtk8.5:amd64 (8.5.17-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../libtk8.6_8.6.2-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.2-1) ... Selecting previously unselected package libtre5:amd64. Preparing to unpack .../libtre5_0.8.0-4+deb8u1_amd64.deb ... Unpacking libtre5:amd64 (0.8.0-4+deb8u1) ... Selecting previously unselected package libtsan0:amd64. Preparing to unpack .../libtsan0_4.9.2-10+deb8u1_amd64.deb ... Unpacking libtsan0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libubsan0:amd64. Preparing to unpack .../libubsan0_4.9.2-10+deb8u1_amd64.deb ... Unpacking libubsan0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libxm4:amd64. Preparing to unpack .../libxm4_2.3.4-6+deb8u1_amd64.deb ... Unpacking libxm4:amd64 (2.3.4-6+deb8u1) ... Selecting previously unselected package libvibrant6b:amd64. Preparing to unpack .../libvibrant6b_6.1.20120620-8_amd64.deb ... Unpacking libvibrant6b:amd64 (6.1.20120620-8) ... Selecting previously unselected package libvisual-0.4-0:amd64. Preparing to unpack .../libvisual-0.4-0_0.4.0-6_amd64.deb ... Unpacking libvisual-0.4-0:amd64 (0.4.0-6) ... Selecting previously unselected package libwmf0.2-7:amd64. Preparing to unpack .../libwmf0.2-7_0.2.8.4-10.3+deb8u2_amd64.deb ... Unpacking libwmf0.2-7:amd64 (0.2.8.4-10.3+deb8u2) ... Selecting previously unselected package libwxbase3.0-0:amd64. Preparing to unpack .../libwxbase3.0-0_3.0.2-1+b1_amd64.deb ... Unpacking libwxbase3.0-0:amd64 (3.0.2-1+b1) ... Selecting previously unselected package libwxgtk3.0-0:amd64. Preparing to unpack .../libwxgtk3.0-0_3.0.2-1+b1_amd64.deb ... Unpacking libwxgtk3.0-0:amd64 (3.0.2-1+b1) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../libxaw7_2%3a1.0.12-2+b1_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.12-2+b1) ... Selecting previously unselected package libxcb-shape0:amd64. Preparing to unpack .../libxcb-shape0_1.10-3+b1_amd64.deb ... Unpacking libxcb-shape0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxmuu1:amd64. Preparing to unpack .../libxmuu1_2%3a1.1.2-1_amd64.deb ... Unpacking libxmuu1:amd64 (2:1.1.2-1) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../libxslt1.1_1.1.28-2+deb8u3_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Selecting previously unselected package libxv1:amd64. Preparing to unpack .../libxv1_2%3a1.0.10-1+deb8u1_amd64.deb ... Unpacking libxv1:amd64 (2:1.0.10-1+deb8u1) ... Selecting previously unselected package libxxf86dga1:amd64. Preparing to unpack .../libxxf86dga1_2%3a1.1.4-1+b1_amd64.deb ... Unpacking libxxf86dga1:amd64 (2:1.1.4-1+b1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../libyaml-0-2_0.1.6-3_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.6-3) ... Selecting previously unselected package libzzip-0-13:amd64. Preparing to unpack .../libzzip-0-13_0.13.62-3+deb8u1_amd64.deb ... Unpacking libzzip-0-13:amd64 (0.13.62-3+deb8u1) ... Selecting previously unselected package lua-filesystem:amd64. Preparing to unpack .../lua-filesystem_1.6.2-3_amd64.deb ... Unpacking lua-filesystem:amd64 (1.6.2-3) ... Selecting previously unselected package lua-lpeg:amd64. Preparing to unpack .../lua-lpeg_0.12-1_amd64.deb ... Unpacking lua-lpeg:amd64 (0.12-1) ... Selecting previously unselected package lua-md5:amd64. Preparing to unpack .../lua-md5_1.2+git+1+8d87fee-1_amd64.deb ... Unpacking lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Selecting previously unselected package metastudent-data. Preparing to unpack .../metastudent-data_1.0.1-2_all.deb ... Unpacking metastudent-data (1.0.1-2) ... Selecting previously unselected package metastudent-data-2. Preparing to unpack .../metastudent-data-2_1.0.0-1_all.deb ... Unpacking metastudent-data-2 (1.0.0-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.7-1_all.deb ... Unpacking poppler-data (0.4.7-1) ... Selecting previously unselected package python3.4-minimal. Preparing to unpack .../python3.4-minimal_3.4.2-1_amd64.deb ... Unpacking python3.4-minimal (3.4.2-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../sgml-base_1.26+nmu4_all.deb ... Unpacking sgml-base (1.26+nmu4) ... Selecting previously unselected package libcbf0:amd64. Preparing to unpack .../libcbf0_0.9.2.2-1_amd64.deb ... Unpacking libcbf0:amd64 (0.9.2.2-1) ... Selecting previously unselected package libcvector2:amd64. Preparing to unpack .../libcvector2_1.0.3.1-1.1_amd64.deb ... Unpacking libcvector2:amd64 (1.0.3.1-1.1) ... Selecting previously unselected package libcneartree5:amd64. Preparing to unpack .../libcneartree5_3.1.1-2.1_amd64.deb ... Unpacking libcneartree5:amd64 (3.1.1-2.1) ... Selecting previously unselected package libcqrlib2:amd64. Preparing to unpack .../libcqrlib2_1.1.2-2.1_amd64.deb ... Unpacking libcqrlib2:amd64 (1.1.2-2.1) ... Selecting previously unselected package libflite1:amd64. Preparing to unpack .../libflite1_1.4-release-12_amd64.deb ... Unpacking libflite1:amd64 (1.4-release-12) ... Selecting previously unselected package libblas-common. Preparing to unpack .../libblas-common_1.2.20110419-10_amd64.deb ... Unpacking libblas-common (1.2.20110419-10) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-10_amd64.deb ... Unpacking libblas3 (1.2.20110419-10) ... Selecting previously unselected package libatlas3-base. Preparing to unpack .../libatlas3-base_3.10.2-7_amd64.deb ... Unpacking libatlas3-base (3.10.2-7) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-4_amd64.deb ... Unpacking liblapack3 (3.5.0-4) ... Selecting previously unselected package libfreecontact0. Preparing to unpack .../libfreecontact0_1.0.21-3+b1_amd64.deb ... Unpacking libfreecontact0 (1.0.21-3+b1) ... Selecting previously unselected package libhmsbeagle1. Preparing to unpack .../libhmsbeagle1_2.1.2-1_amd64.deb ... Unpacking libhmsbeagle1 (2.1.2-1) ... Selecting previously unselected package libmpc3:amd64. Preparing to unpack .../libmpc3_1.0.2-1_amd64.deb ... Unpacking libmpc3:amd64 (1.0.2-1) ... Selecting previously unselected package libpangox-1.0-0:amd64. Preparing to unpack .../libpangox-1.0-0_0.0.2-5_amd64.deb ... Unpacking libpangox-1.0-0:amd64 (0.0.2-5) ... Selecting previously unselected package libtxc-dxtn-s2tc0:amd64. Preparing to unpack .../libtxc-dxtn-s2tc0_0~git20131104-1.1_amd64.deb ... Unpacking libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... Selecting previously unselected package libwebp5:amd64. Preparing to unpack .../libwebp5_0.4.1-1.2+b2_amd64.deb ... Unpacking libwebp5:amd64 (0.4.1-1.2+b2) ... Selecting previously unselected package libwebpdemux1:amd64. Preparing to unpack .../libwebpdemux1_0.4.1-1.2+b2_amd64.deb ... Unpacking libwebpdemux1:amd64 (0.4.1-1.2+b2) ... Selecting previously unselected package libwebpmux1:amd64. Preparing to unpack .../libwebpmux1_0.4.1-1.2+b2_amd64.deb ... Unpacking libwebpmux1:amd64 (0.4.1-1.2+b2) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../ocl-icd-libopencl1_2.2.3-1+deb8u1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Selecting previously unselected package rate4site. Preparing to unpack .../rate4site_3.0.0-1_amd64.deb ... Unpacking rate4site (3.0.0-1) ... Selecting previously unselected package dmidecode. Preparing to unpack .../dmidecode_2.12-3_amd64.deb ... Unpacking dmidecode (2.12-3) ... Selecting previously unselected package iproute2. Preparing to unpack .../iproute2_3.16.0-2_amd64.deb ... Unpacking iproute2 (3.16.0-2) ... Selecting previously unselected package ifupdown. Preparing to unpack .../ifupdown_0.7.53.1_amd64.deb ... Unpacking ifupdown (0.7.53.1) ... Selecting previously unselected package init-system-helpers. Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package isc-dhcp-common. Preparing to unpack .../isc-dhcp-common_4.3.1-6+deb8u3_amd64.deb ... Unpacking isc-dhcp-common (4.3.1-6+deb8u3) ... Selecting previously unselected package isc-dhcp-client. Preparing to unpack .../isc-dhcp-client_4.3.1-6+deb8u3_amd64.deb ... Unpacking isc-dhcp-client (4.3.1-6+deb8u3) ... Selecting previously unselected package libxtables10. Preparing to unpack .../libxtables10_1.4.21-2+b1_amd64.deb ... Unpacking libxtables10 (1.4.21-2+b1) ... Selecting previously unselected package manpages. Preparing to unpack .../manpages_3.74-1_all.deb ... Unpacking manpages (3.74-1) ... Selecting previously unselected package netbase. Preparing to unpack .../archives/netbase_5.3_all.deb ... Unpacking netbase (5.3) ... Selecting previously unselected package bc. Preparing to unpack .../bc_1.06.95-9_amd64.deb ... Unpacking bc (1.06.95-9) ... Selecting previously unselected package bzip2. Preparing to unpack .../bzip2_1.0.6-7+b3_amd64.deb ... Unpacking bzip2 (1.0.6-7+b3) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2+deb8u4_amd64.deb ... Unpacking file (1:5.22+15-2+deb8u4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.3-2_amd64.deb ... Unpacking gettext-base (0.19.3-2) ... Selecting previously unselected package krb5-locales. Preparing to unpack .../krb5-locales_1.12.1+dfsg-19+deb8u4_all.deb ... Unpacking krb5-locales (1.12.1+dfsg-19+deb8u4) ... Selecting previously unselected package openssh-client. Preparing to unpack .../openssh-client_1%3a6.7p1-5+deb8u4_amd64.deb ... Unpacking openssh-client (1:6.7p1-5+deb8u4) ... Selecting previously unselected package patch. Preparing to unpack .../patch_2.7.5-1+deb8u1_amd64.deb ... Unpacking patch (2.7.5-1+deb8u1) ... Selecting previously unselected package python-support. Preparing to unpack .../python-support_1.0.15_all.deb ... Unpacking python-support (1.0.15) ... Selecting previously unselected package xz-utils. Preparing to unpack .../xz-utils_5.1.1alpha+20120614-2+b3_amd64.deb ... Unpacking xz-utils (5.1.1alpha+20120614-2+b3) ... Selecting previously unselected package mummer. Preparing to unpack .../mummer_3.23~dfsg-2_amd64.deb ... Unpacking mummer (3.23~dfsg-2) ... Selecting previously unselected package abacas. Preparing to unpack .../abacas_1.3.1-2_all.deb ... Unpacking abacas (1.3.1-2) ... Selecting previously unselected package gnustep-common. Preparing to unpack .../gnustep-common_2.6.6-3_amd64.deb ... Unpacking gnustep-common (2.6.6-3) ... Selecting previously unselected package openssl. Preparing to unpack .../openssl_1.0.1t-1+deb8u8_amd64.deb ... Unpacking openssl (1.0.1t-1+deb8u8) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../ca-certificates_20141019+deb8u3_all.deb ... Unpacking ca-certificates (20141019+deb8u3) ... Selecting previously unselected package gnustep-base-common. Preparing to unpack .../gnustep-base-common_1.24.7-1_all.deb ... Unpacking gnustep-base-common (1.24.7-1) ... Selecting previously unselected package libgnustep-base1.24. Preparing to unpack .../libgnustep-base1.24_1.24.7-1_amd64.deb ... Unpacking libgnustep-base1.24 (1.24.7-1) ... Selecting previously unselected package gnustep-base-runtime. Preparing to unpack .../gnustep-base-runtime_1.24.7-1_amd64.deb ... Unpacking gnustep-base-runtime (1.24.7-1) ... Selecting previously unselected package mknfonts.tool. Preparing to unpack .../mknfonts.tool_0.5-11+b4_amd64.deb ... Unpacking mknfonts.tool (0.5-11+b4) ... Selecting previously unselected package fonts-freefont-ttf. Preparing to unpack .../fonts-freefont-ttf_20120503-4_all.deb ... Unpacking fonts-freefont-ttf (20120503-4) ... Selecting previously unselected package gnustep-gui-common. Preparing to unpack .../gnustep-gui-common_0.24.0-3_all.deb ... Unpacking gnustep-gui-common (0.24.0-3) ... Selecting previously unselected package libao-common. Preparing to unpack .../libao-common_1.1.0-3_amd64.deb ... Unpacking libao-common (1.1.0-3) ... Selecting previously unselected package libao4. Preparing to unpack .../libao4_1.1.0-3_amd64.deb ... Unpacking libao4 (1.1.0-3) ... Selecting previously unselected package libgnustep-gui0.24. Preparing to unpack .../libgnustep-gui0.24_0.24.0-3_amd64.deb ... Unpacking libgnustep-gui0.24 (0.24.0-3) ... Selecting previously unselected package gnustep-gui-runtime. Preparing to unpack .../gnustep-gui-runtime_0.24.0-3_amd64.deb ... Unpacking gnustep-gui-runtime (0.24.0-3) ... Selecting previously unselected package gnustep-back-common. Preparing to unpack .../gnustep-back-common_0.24.0-4_amd64.deb ... Unpacking gnustep-back-common (0.24.0-4) ... Selecting previously unselected package gnustep-back0.24-cairo. Preparing to unpack .../gnustep-back0.24-cairo_0.24.0-4_amd64.deb ... Unpacking gnustep-back0.24-cairo (0.24.0-4) ... Selecting previously unselected package gnustep-back0.24. Preparing to unpack .../gnustep-back0.24_0.24.0-4_all.deb ... Unpacking gnustep-back0.24 (0.24.0-4) ... Selecting previously unselected package libgsl0ldbl. Preparing to unpack .../libgsl0ldbl_1.16+dfsg-2_amd64.deb ... Unpacking libgsl0ldbl (1.16+dfsg-2) ... Selecting previously unselected package adun.app. Preparing to unpack .../adun.app_0.81-6+b1_amd64.deb ... Unpacking adun.app (0.81-6+b1) ... Selecting previously unselected package aevol. Preparing to unpack .../archives/aevol_4.4-1_amd64.deb ... Unpacking aevol (4.4-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../ca-certificates-java_20140324_all.deb ... Unpacking ca-certificates-java (20140324) ... Selecting previously unselected package tzdata-java. Preparing to unpack .../tzdata-java_2018e-0+deb8u1_all.deb ... Unpacking tzdata-java (2018e-0+deb8u1) ... Selecting previously unselected package java-common. Preparing to unpack .../java-common_0.52_all.deb ... Unpacking java-common (0.52) ... Selecting previously unselected package openjdk-7-jre-headless:amd64. Preparing to unpack .../openjdk-7-jre-headless_7u181-2.6.14-1~deb8u1_amd64.deb ... Unpacking openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../default-jre-headless_2%3a1.7-52_amd64.deb ... Unpacking default-jre-headless (2:1.7-52) ... Selecting previously unselected package openjdk-7-jre:amd64. Preparing to unpack .../openjdk-7-jre_7u181-2.6.14-1~deb8u1_amd64.deb ... Unpacking openjdk-7-jre:amd64 (7u181-2.6.14-1~deb8u1) ... Selecting previously unselected package default-jre. Preparing to unpack .../default-jre_2%3a1.7-52_amd64.deb ... Unpacking default-jre (2:1.7-52) ... Selecting previously unselected package libbytecode-java. Preparing to unpack .../libbytecode-java_0.92.svn.20090106-1.1_all.deb ... Unpacking libbytecode-java (0.92.svn.20090106-1.1) ... Selecting previously unselected package libcommons-pool-java. Preparing to unpack .../libcommons-pool-java_1.6-2_all.deb ... Unpacking libcommons-pool-java (1.6-2) ... Selecting previously unselected package libcommons-collections3-java. Preparing to unpack .../libcommons-collections3-java_3.2.1-7+deb8u1_all.deb ... Unpacking libcommons-collections3-java (3.2.1-7+deb8u1) ... Selecting previously unselected package libcommons-dbcp-java. Preparing to unpack .../libcommons-dbcp-java_1.4-5_all.deb ... Unpacking libcommons-dbcp-java (1.4-5) ... Selecting previously unselected package libservlet2.5-java. Preparing to unpack .../libservlet2.5-java_6.0.45+dfsg-1~deb8u1_all.deb ... Unpacking libservlet2.5-java (6.0.45+dfsg-1~deb8u1) ... Selecting previously unselected package libhsqldb-java. Preparing to unpack .../libhsqldb-java_2.2.9+dfsg-4_all.deb ... Unpacking libhsqldb-java (2.2.9+dfsg-4) ... Selecting previously unselected package libbiojava1.7-java. Preparing to unpack .../libbiojava1.7-java_1%3a1.7.1-5_all.deb ... Unpacking libbiojava1.7-java (1:1.7.1-5) ... Selecting previously unselected package libbiojava-java. Preparing to unpack .../libbiojava-java_1%3a1.7.1-5_all.deb ... Unpacking libbiojava-java (1:1.7.1-5) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../libapache-pom-java_10-2_all.deb ... Unpacking libapache-pom-java (10-2) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../libcommons-parent-java_22-2_all.deb ... Unpacking libcommons-parent-java (22-2) ... Selecting previously unselected package libcommons-lang-java. Preparing to unpack .../libcommons-lang-java_2.6-4_all.deb ... Unpacking libcommons-lang-java (2.6-4) ... Selecting previously unselected package libcommons-cli-java. Preparing to unpack .../libcommons-cli-java_1.2-3_all.deb ... Unpacking libcommons-cli-java (1.2-3) ... Selecting previously unselected package alien-hunter. Preparing to unpack .../alien-hunter_1.7-3_all.deb ... Unpacking alien-hunter (1.7-3) ... Selecting previously unselected package libtamuanova-0.2. Preparing to unpack .../libtamuanova-0.2_0.2-3_amd64.deb ... Unpacking libtamuanova-0.2 (0.2-3) ... Selecting previously unselected package libmath-tamuanova-perl. Preparing to unpack .../libmath-tamuanova-perl_1.0.2-2+b2_amd64.deb ... Unpacking libmath-tamuanova-perl (1.0.2-2+b2) ... Selecting previously unselected package altree. Preparing to unpack .../altree_1.3.1-2+b1_amd64.deb ... Unpacking altree (1.3.1-2+b1) ... Selecting previously unselected package amap-align. Preparing to unpack .../amap-align_2.2-4_amd64.deb ... Unpacking amap-align (2.2-4) ... Selecting previously unselected package libelk0. Preparing to unpack .../libelk0_3.99.8-2.1_amd64.deb ... Unpacking libelk0 (3.99.8-2.1) ... Selecting previously unselected package libprotobuf9:amd64. Preparing to unpack .../libprotobuf9_2.6.1-1_amd64.deb ... Unpacking libprotobuf9:amd64 (2.6.1-1) ... Selecting previously unselected package libanfo0. Preparing to unpack .../libanfo0_0.98-4+b1_amd64.deb ... Unpacking libanfo0 (0.98-4+b1) ... Selecting previously unselected package anfo. Preparing to unpack .../anfo_0.98-4+b1_amd64.deb ... Unpacking anfo (0.98-4+b1) ... Selecting previously unselected package ant. Preparing to unpack .../archives/ant_1.9.4-3_all.deb ... Unpacking ant (1.9.4-3) ... Selecting previously unselected package ant-optional. Preparing to unpack .../ant-optional_1.9.4-3_all.deb ... Unpacking ant-optional (1.9.4-3) ... Selecting previously unselected package libmaloc1. Preparing to unpack .../libmaloc1_0.2-3_amd64.deb ... Unpacking libmaloc1 (0.2-3) ... Selecting previously unselected package apbs. Preparing to unpack .../archives/apbs_1.4-1_amd64.deb ... Unpacking apbs (1.4-1) ... Selecting previously unselected package aragorn. Preparing to unpack .../aragorn_1.2.36-4_amd64.deb ... Unpacking aragorn (1.2.36-4) ... Selecting previously unselected package python-decorator. Preparing to unpack .../python-decorator_3.4.0-2_all.deb ... Unpacking python-decorator (3.4.0-2) ... Selecting previously unselected package python-numpy. Preparing to unpack .../python-numpy_1%3a1.8.2-2_amd64.deb ... Unpacking python-numpy (1:1.8.2-2) ... Selecting previously unselected package python-scipy. Preparing to unpack .../python-scipy_0.14.0-2_amd64.deb ... Unpacking python-scipy (0.14.0-2) ... Selecting previously unselected package python-htseq. Preparing to unpack .../python-htseq_0.5.4p3-2_amd64.deb ... Unpacking python-htseq (0.5.4p3-2) ... Selecting previously unselected package python-six. Preparing to unpack .../python-six_1.8.0-1_all.deb ... Unpacking python-six (1.8.0-1) ... Selecting previously unselected package python-dateutil. Preparing to unpack .../python-dateutil_2.2-2_all.deb ... Unpacking python-dateutil (2.2-2) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../fonts-lyx_2.1.2-2_all.deb ... Unpacking fonts-lyx (2.1.2-2) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../python-matplotlib-data_1.4.2-3.1_all.deb ... Unpacking python-matplotlib-data (1.4.2-3.1) ... Selecting previously unselected package python-pyparsing. Preparing to unpack .../python-pyparsing_2.0.3+dfsg1-1_all.deb ... Unpacking python-pyparsing (2.0.3+dfsg1-1) ... Selecting previously unselected package python-tz. Preparing to unpack .../python-tz_2012c+dfsg-0.1_all.deb ... Unpacking python-tz (2012c+dfsg-0.1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../libjs-jquery_1.7.2+dfsg-3.2_all.deb ... Unpacking libjs-jquery (1.7.2+dfsg-3.2) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../libjs-jquery-ui_1.10.1+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.10.1+dfsg-1) ... Selecting previously unselected package python-mock. Preparing to unpack .../python-mock_1.0.1-3_all.deb ... Unpacking python-mock (1.0.1-3) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../python-pkg-resources_5.5.1-1_all.deb ... Unpacking python-pkg-resources (5.5.1-1) ... Selecting previously unselected package python-nose. Preparing to unpack .../python-nose_1.3.4-1_all.deb ... Unpacking python-nose (1.3.4-1) ... Selecting previously unselected package python-matplotlib. Preparing to unpack .../python-matplotlib_1.4.2-3.1_amd64.deb ... Unpacking python-matplotlib (1.4.2-3.1) ... Selecting previously unselected package arden. Preparing to unpack .../archives/arden_1.0-1_amd64.deb ... Unpacking arden (1.0-1) ... Selecting previously unselected package emacsen-common. Preparing to unpack .../emacsen-common_2.0.8_all.deb ... Unpacking emacsen-common (2.0.8) ... Selecting previously unselected package dictionaries-common. Preparing to unpack .../dictionaries-common_1.23.17_all.deb ... Adding 'diversion of /usr/share/dict/words to /usr/share/dict/words.pre-dictionaries-common by dictionaries-common' Unpacking dictionaries-common (1.23.17) ... Selecting previously unselected package aspell. Preparing to unpack .../aspell_0.60.7~20110707-1.3_amd64.deb ... Unpacking aspell (0.60.7~20110707-1.3) ... Selecting previously unselected package aspell-en. Preparing to unpack .../aspell-en_7.1-0-1.1_all.deb ... Unpacking aspell-en (7.1-0-1.1) ... Selecting previously unselected package at-spi2-core. Preparing to unpack .../at-spi2-core_2.14.0-1_amd64.deb ... Unpacking at-spi2-core (2.14.0-1) ... Selecting previously unselected package autodock. Preparing to unpack .../autodock_4.2.6-2_amd64.deb ... Unpacking autodock (4.2.6-2) ... Selecting previously unselected package autogrid. Preparing to unpack .../autogrid_4.2.6-2_amd64.deb ... Unpacking autogrid (4.2.6-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../autopoint_0.19.3-2_all.deb ... Unpacking autopoint (0.19.3-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20140911.1_all.deb ... Unpacking autotools-dev (20140911.1) ... Selecting previously unselected package libball1.4-data. Preparing to unpack .../libball1.4-data_1.4.2+20140406-1_all.deb ... Unpacking libball1.4-data (1.4.2+20140406-1) ... Selecting previously unselected package libball1.4. Preparing to unpack .../libball1.4_1.4.2+20140406-1+b2_amd64.deb ... Unpacking libball1.4 (1.4.2+20140406-1+b2) ... Selecting previously unselected package libballview1.4. Preparing to unpack .../libballview1.4_1.4.2+20140406-1+b2_amd64.deb ... Unpacking libballview1.4 (1.4.2+20140406-1+b2) ... Selecting previously unselected package python-sip. Preparing to unpack .../python-sip_4.16.4+dfsg-1_amd64.deb ... Unpacking python-sip (4.16.4+dfsg-1) ... Selecting previously unselected package python-ball. Preparing to unpack .../python-ball_1.4.2+20140406-1+b2_amd64.deb ... Unpacking python-ball (1.4.2+20140406-1+b2) ... Selecting previously unselected package python-ballview. Preparing to unpack .../python-ballview_1.4.2+20140406-1+b2_amd64.deb ... Unpacking python-ballview (1.4.2+20140406-1+b2) ... Selecting previously unselected package ballview. Preparing to unpack .../ballview_1.4.2+20140406-1+b2_amd64.deb ... Unpacking ballview (1.4.2+20140406-1+b2) ... Selecting previously unselected package libbamtools2.3.0. Preparing to unpack .../libbamtools2.3.0_2.3.0+dfsg-2_amd64.deb ... Unpacking libbamtools2.3.0 (2.3.0+dfsg-2) ... Selecting previously unselected package libjsoncpp0. Preparing to unpack .../libjsoncpp0_0.6.0~rc2-3.1_amd64.deb ... Unpacking libjsoncpp0 (0.6.0~rc2-3.1) ... Selecting previously unselected package bamtools. Preparing to unpack .../bamtools_2.3.0+dfsg-2_amd64.deb ... Unpacking bamtools (2.3.0+dfsg-2) ... Selecting previously unselected package bedtools. Preparing to unpack .../bedtools_2.21.0-1_amd64.deb ... Unpacking bedtools (2.21.0-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../binfmt-support_2.1.5-1_amd64.deb ... Unpacking binfmt-support (2.1.5-1) ... Selecting previously unselected package binutils. Preparing to unpack .../binutils_2.25-5+deb8u1_amd64.deb ... Unpacking binutils (2.25-5+deb8u1) ... Selecting previously unselected package ant-contrib. Preparing to unpack .../ant-contrib_1.0~b3+svn177-6_all.deb ... Unpacking ant-contrib (1.0~b3+svn177-6) ... Selecting previously unselected package libhamcrest-java. Preparing to unpack .../libhamcrest-java_1.3-5_all.deb ... Unpacking libhamcrest-java (1.3-5) ... Selecting previously unselected package junit4. Preparing to unpack .../archives/junit4_4.11-3_all.deb ... Unpacking junit4 (4.11-3) ... Selecting previously unselected package libcommons-codec-java. Preparing to unpack .../libcommons-codec-java_1.9-1_all.deb ... Unpacking libcommons-codec-java (1.9-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../libcommons-logging-java_1.2-1_all.deb ... Unpacking libcommons-logging-java (1.2-1) ... Selecting previously unselected package libcommons-httpclient-java. Preparing to unpack .../libcommons-httpclient-java_3.1-11+deb8u1_all.deb ... Unpacking libcommons-httpclient-java (3.1-11+deb8u1) ... Selecting previously unselected package libcommons-net2-java. Preparing to unpack .../libcommons-net2-java_2.2-2_all.deb ... Unpacking libcommons-net2-java (2.2-2) ... Selecting previously unselected package libmail-java. Preparing to unpack .../libmail-java_1.5.2-3_all.deb ... Unpacking libmail-java (1.5.2-3) ... Selecting previously unselected package libjcommon-java. Preparing to unpack .../libjcommon-java_1.0.16-4_all.deb ... Unpacking libjcommon-java (1.0.16-4) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../libjaxen-java_1.1.6-1_all.deb ... Unpacking libjaxen-java (1.1.6-1) ... Selecting previously unselected package libjdom1-java. Preparing to unpack .../libjdom1-java_1.1.3-1_all.deb ... Unpacking libjdom1-java (1.1.3-1) ... Selecting previously unselected package libwsdl4j-java. Preparing to unpack .../libwsdl4j-java_1.6.3-1_all.deb ... Unpacking libwsdl4j-java (1.6.3-1) ... Selecting previously unselected package libcommons-discovery-java. Preparing to unpack .../libcommons-discovery-java_0.5-3_all.deb ... Unpacking libcommons-discovery-java (0.5-3) ... Selecting previously unselected package libaxis-java. Preparing to unpack .../libaxis-java_1.4-22_all.deb ... Unpacking libaxis-java (1.4-22) ... Selecting previously unselected package libjava-xmlbuilder-java. Preparing to unpack .../libjava-xmlbuilder-java_0.4-2_all.deb ... Unpacking libjava-xmlbuilder-java (0.4-2) ... Selecting previously unselected package libjets3t-java. Preparing to unpack .../libjets3t-java_0.8.1+dfsg-1_all.deb ... Unpacking libjets3t-java (0.8.1+dfsg-1) ... Selecting previously unselected package libjgoodies-common-java. Preparing to unpack .../libjgoodies-common-java_1.4.0-2_all.deb ... Unpacking libjgoodies-common-java (1.4.0-2) ... Selecting previously unselected package libjgoodies-forms-java. Preparing to unpack .../libjgoodies-forms-java_1.6.0-4_all.deb ... Unpacking libjgoodies-forms-java (1.6.0-4) ... Selecting previously unselected package libjzlib-java. Preparing to unpack .../libjzlib-java_1.1.3-1_all.deb ... Unpacking libjzlib-java (1.1.3-1) ... Selecting previously unselected package libjsch-java. Preparing to unpack .../libjsch-java_0.1.51-1_all.deb ... Unpacking libjsch-java (0.1.51-1) ... Selecting previously unselected package liblog4j1.2-java. Preparing to unpack .../liblog4j1.2-java_1.2.17-5_all.deb ... Unpacking liblog4j1.2-java (1.2.17-5) ... Selecting previously unselected package libmysql-java. Preparing to unpack .../libmysql-java_5.1.42-1~deb8u1_all.deb ... Unpacking libmysql-java (5.1.42-1~deb8u1) ... Selecting previously unselected package liboro-java. Preparing to unpack .../liboro-java_2.0.8a-9_all.deb ... Unpacking liboro-java (2.0.8a-9) ... Selecting previously unselected package libregexp-java. Preparing to unpack .../libregexp-java_1.5-3_all.deb ... Unpacking libregexp-java (1.5-3) ... Selecting previously unselected package libisorelax-java. Preparing to unpack .../libisorelax-java_20041111-8_all.deb ... Unpacking libisorelax-java (20041111-8) ... Selecting previously unselected package librelaxng-datatype-java. Preparing to unpack .../librelaxng-datatype-java_1.0+ds1-3_all.deb ... Unpacking librelaxng-datatype-java (1.0+ds1-3) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../libxml-commons-resolver1.1-java_1.2-7_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-7) ... Selecting previously unselected package libxml-commons-external-java. Preparing to unpack .../libxml-commons-external-java_1.4.01-2_all.deb ... Unpacking libxml-commons-external-java (1.4.01-2) ... Selecting previously unselected package libxerces2-java. Preparing to unpack .../libxerces2-java_2.11.0-7_all.deb ... Unpacking libxerces2-java (2.11.0-7) ... Selecting previously unselected package libmsv-java. Preparing to unpack .../libmsv-java_2009.1+dfsg1-4_all.deb ... Unpacking libmsv-java (2009.1+dfsg1-4) ... Selecting previously unselected package libxpp2-java. Preparing to unpack .../libxpp2-java_2.1.10-7_all.deb ... Unpacking libxpp2-java (2.1.10-7) ... Selecting previously unselected package libxpp3-java. Preparing to unpack .../libxpp3-java_1.1.4c-2_all.deb ... Unpacking libxpp3-java (1.1.4c-2) ... Selecting previously unselected package libdom4j-java. Preparing to unpack .../libdom4j-java_1.6.1+dfsg.3-2_all.deb ... Unpacking libdom4j-java (1.6.1+dfsg.3-2) ... Selecting previously unselected package libxom-java. Preparing to unpack .../libxom-java_1.2.10-1_all.deb ... Unpacking libxom-java (1.2.10-1) ... Selecting previously unselected package libsaxonb-java. Preparing to unpack .../libsaxonb-java_9.1.0.8+dfsg-1_all.deb ... Unpacking libsaxonb-java (9.1.0.8+dfsg-1) ... Selecting previously unselected package libdbi-perl. Preparing to unpack .../libdbi-perl_1.631-3+b1_amd64.deb ... Unpacking libdbi-perl (1.631-3+b1) ... Selecting previously unselected package libdbd-mysql-perl. Preparing to unpack .../libdbd-mysql-perl_4.028-2+deb8u2_amd64.deb ... Unpacking libdbd-mysql-perl (4.028-2+deb8u2) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../libterm-readkey-perl_2.32-1+b1_amd64.deb ... Unpacking libterm-readkey-perl (2.32-1+b1) ... Selecting previously unselected package mysql-client-5.5. Preparing to unpack .../mysql-client-5.5_5.5.60-0+deb8u1_amd64.deb ... Unpacking mysql-client-5.5 (5.5.60-0+deb8u1) ... Selecting previously unselected package mysql-client. Preparing to unpack .../mysql-client_5.5.60-0+deb8u1_all.deb ... Unpacking mysql-client (5.5.60-0+deb8u1) ... Selecting previously unselected package biomaj. Preparing to unpack .../biomaj_1.2.3-4_all.deb ... Unpacking biomaj (1.2.3-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../libdata-stag-perl_0.13-1_all.deb ... Unpacking libdata-stag-perl (0.13-1) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../libbio-perl-perl_1.6.924-1_all.deb ... Unpacking libbio-perl-perl (1.6.924-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../bioperl_1.6.924-1_all.deb ... Unpacking bioperl (1.6.924-1) ... Selecting previously unselected package libbio-perl-run-perl. Preparing to unpack .../libbio-perl-run-perl_1.6.9-2_all.deb ... Unpacking libbio-perl-run-perl (1.6.9-2) ... Selecting previously unselected package bioperl-run. Preparing to unpack .../bioperl-run_1.6.9-2_all.deb ... Unpacking bioperl-run (1.6.9-2) ... Selecting previously unselected package biosquid. Preparing to unpack .../biosquid_1.9g+cvs20050121-4_amd64.deb ... Unpacking biosquid (1.9g+cvs20050121-4) ... Selecting previously unselected package blast2. Preparing to unpack .../blast2_1%3a2.2.26.20120620-8_amd64.deb ... Unpacking blast2 (1:2.2.26.20120620-8) ... Selecting previously unselected package menu. Preparing to unpack .../archives/menu_2.1.47_amd64.deb ... Unpacking menu (2.1.47) ... Selecting previously unselected package blends-common. Preparing to unpack .../blends-common_0.6.92.2_all.deb ... Unpacking blends-common (0.6.92.2) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../tk8.6-blt2.5_2.5.3+dfsg-1_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-1) ... Selecting previously unselected package blt. Preparing to unpack .../blt_2.5.3+dfsg-1_amd64.deb ... Unpacking blt (2.5.3+dfsg-1) ... Selecting previously unselected package boxshade. Preparing to unpack .../boxshade_3.3.1-8_amd64.deb ... Unpacking boxshade (3.3.1-8) ... Selecting previously unselected package cpp-4.9. Preparing to unpack .../cpp-4.9_4.9.2-10+deb8u1_amd64.deb ... Unpacking cpp-4.9 (4.9.2-10+deb8u1) ... Selecting previously unselected package cpp. Preparing to unpack .../cpp_4%3a4.9.2-2_amd64.deb ... Unpacking cpp (4:4.9.2-2) ... Selecting previously unselected package libgcc-4.9-dev:amd64. Preparing to unpack .../libgcc-4.9-dev_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgcc-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package gcc-4.9. Preparing to unpack .../gcc-4.9_4.9.2-10+deb8u1_amd64.deb ... Unpacking gcc-4.9 (4.9.2-10+deb8u1) ... Selecting previously unselected package gcc. Preparing to unpack .../gcc_4%3a4.9.2-2_amd64.deb ... Unpacking gcc (4:4.9.2-2) ... Selecting previously unselected package libstdc++-4.9-dev:amd64. Preparing to unpack .../libstdc++-4.9-dev_4.9.2-10+deb8u1_amd64.deb ... Unpacking libstdc++-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package g++-4.9. Preparing to unpack .../g++-4.9_4.9.2-10+deb8u1_amd64.deb ... Unpacking g++-4.9 (4.9.2-10+deb8u1) ... Selecting previously unselected package g++. Preparing to unpack .../g++_4%3a4.9.2-2_amd64.deb ... Unpacking g++ (4:4.9.2-2) ... Selecting previously unselected package make. Preparing to unpack .../make_4.0-8.1_amd64.deb ... Unpacking make (4.0-8.1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../libdpkg-perl_1.17.27_all.deb ... Unpacking libdpkg-perl (1.17.27) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../dpkg-dev_1.17.27_all.deb ... Unpacking dpkg-dev (1.17.27) ... Selecting previously unselected package build-essential. Preparing to unpack .../build-essential_11.7_amd64.deb ... Unpacking build-essential (11.7) ... Selecting previously unselected package bwa. Preparing to unpack .../bwa_0.7.10-1_amd64.deb ... Unpacking bwa (0.7.10-1) ... Selecting previously unselected package bzip2-doc. Preparing to unpack .../bzip2-doc_1.0.6-7_all.deb ... Unpacking bzip2-doc (1.0.6-7) ... Selecting previously unselected package libcassie1. Preparing to unpack .../libcassie1_1.0.1+dfsg-3+b1_amd64.deb ... Unpacking libcassie1 (1.0.1+dfsg-3+b1) ... Selecting previously unselected package cassiopee. Preparing to unpack .../cassiopee_1.0.1+dfsg-3+b1_amd64.deb ... Unpacking cassiopee (1.0.1+dfsg-3+b1) ... Selecting previously unselected package cd-hit. Preparing to unpack .../cd-hit_4.6.1-2012-08-27-2_amd64.deb ... Unpacking cd-hit (4.6.1-2012-08-27-2) ... Selecting previously unselected package cdbfasta. Preparing to unpack .../cdbfasta_0.99-20100722-1_amd64.deb ... Unpacking cdbfasta (0.99-20100722-1) ... Selecting previously unselected package cdbs. Preparing to unpack .../cdbs_0.4.130+deb8u1_all.deb ... Unpacking cdbs (0.4.130+deb8u1) ... Selecting previously unselected package microbiomeutil-data. Preparing to unpack .../microbiomeutil-data_20101212+dfsg-1_all.deb ... Unpacking microbiomeutil-data (20101212+dfsg-1) ... Selecting previously unselected package chimeraslayer. Preparing to unpack .../chimeraslayer_20101212+dfsg-1_all.deb ... Unpacking chimeraslayer (20101212+dfsg-1) ... Selecting previously unselected package clearcut. Preparing to unpack .../clearcut_1.0.9-1_amd64.deb ... Unpacking clearcut (1.0.9-1) ... Selecting previously unselected package clonalframe. Preparing to unpack .../clonalframe_1.2-3_amd64.deb ... Unpacking clonalframe (1.2-3) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../libargtable2-0_12-1.1_amd64.deb ... Unpacking libargtable2-0 (12-1.1) ... Selecting previously unselected package clustalo. Preparing to unpack .../clustalo_1.2.1-1_amd64.deb ... Unpacking clustalo (1.2.1-1) ... Selecting previously unselected package clustalw. Preparing to unpack .../clustalw_2.1+lgpl-4_amd64.deb ... Unpacking clustalw (2.1+lgpl-4) ... Selecting previously unselected package clustalx. Preparing to unpack .../clustalx_2.1+lgpl-3_amd64.deb ... Unpacking clustalx (2.1+lgpl-3) ... Selecting previously unselected package policykit-1. Preparing to unpack .../policykit-1_0.105-15~deb8u2_amd64.deb ... Unpacking policykit-1 (0.105-15~deb8u2) ... Selecting previously unselected package colord-data. Preparing to unpack .../colord-data_1.2.1-1_all.deb ... Unpacking colord-data (1.2.1-1) ... Selecting previously unselected package colord. Preparing to unpack .../colord_1.2.1-1+b2_amd64.deb ... Unpacking colord (1.2.1-1+b2) ... Selecting previously unselected package curl. Preparing to unpack .../curl_7.38.0-4+deb8u11_amd64.deb ... Unpacking curl (7.38.0-4+deb8u11) ... Selecting previously unselected package cython. Preparing to unpack .../cython_0.21.1-1_amd64.deb ... Unpacking cython (0.21.1-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.3-2_amd64.deb ... Unpacking gettext (0.19.3-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu3_all.deb ... Unpacking po-debconf (1.0.16+nmu3) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20150101+deb8u2_all.deb ... Unpacking debhelper (9.20150101+deb8u2) ... Selecting previously unselected package python3.4. Preparing to unpack .../python3.4_3.4.2-1_amd64.deb ... Unpacking python3.4 (3.4.2-1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../python3-minimal_3.4.2-2_amd64.deb ... Unpacking python3-minimal (3.4.2-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.4.2-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.4.2-2) ... Selecting previously unselected package python3. Preparing to unpack .../python3_3.4.2-2_amd64.deb ... Unpacking python3 (3.4.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../dh-python_1.20141111-2_all.deb ... Unpacking dh-python (1.20141111-2) ... Selecting previously unselected package dialign. Preparing to unpack .../dialign_2.2.1-7_amd64.deb ... Unpacking dialign (2.2.1-7) ... Selecting previously unselected package dialign-tx-data. Preparing to unpack .../dialign-tx-data_1.0.2-7_all.deb ... Unpacking dialign-tx-data (1.0.2-7) ... Selecting previously unselected package dialign-tx. Preparing to unpack .../dialign-tx_1.0.2-7_amd64.deb ... Unpacking dialign-tx (1.0.2-7) ... Selecting previously unselected package discosnp. Preparing to unpack .../discosnp_1.2.5-1_amd64.deb ... Unpacking discosnp (1.2.5-1) ... Selecting previously unselected package dnaclust. Preparing to unpack .../dnaclust_3-2+b1_amd64.deb ... Unpacking dnaclust (3-2+b1) ... Selecting previously unselected package xml-core. Preparing to unpack .../xml-core_0.13+nmu2_all.deb ... Unpacking xml-core (0.13+nmu2) ... Selecting previously unselected package docutils-common. Preparing to unpack .../docutils-common_0.12+dfsg-1_all.deb ... Unpacking docutils-common (0.12+dfsg-1) ... Selecting previously unselected package docutils-doc. Preparing to unpack .../docutils-doc_0.12+dfsg-1_all.deb ... Unpacking docutils-doc (0.12+dfsg-1) ... Selecting previously unselected package dssp. Preparing to unpack .../dssp_2.2.1-2+b1_amd64.deb ... Unpacking dssp (2.2.1-2+b1) ... Selecting previously unselected package libkpathsea6. Preparing to unpack .../libkpathsea6_2014.20140926.35254-6_amd64.deb ... Unpacking libkpathsea6 (2014.20140926.35254-6) ... Selecting previously unselected package libptexenc1. Preparing to unpack .../libptexenc1_2014.20140926.35254-6_amd64.deb ... Unpacking libptexenc1 (2014.20140926.35254-6) ... Selecting previously unselected package libjbig2dec0. Preparing to unpack .../libjbig2dec0_0.13-4~deb8u2_amd64.deb ... Unpacking libjbig2dec0 (0.13-4~deb8u2) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../libgs9-common_9.06~dfsg-2+deb8u7_all.deb ... Unpacking libgs9-common (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package libgs9. Preparing to unpack .../libgs9_9.06~dfsg-2+deb8u7_amd64.deb ... Unpacking libgs9 (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package libpotrace0. Preparing to unpack .../libpotrace0_1.12-1+deb8u1_amd64.deb ... Unpacking libpotrace0 (1.12-1+deb8u1) ... Selecting previously unselected package libsynctex1. Preparing to unpack .../libsynctex1_2014.20140926.35254-6_amd64.deb ... Unpacking libsynctex1 (2014.20140926.35254-6) ... Selecting previously unselected package tex-common. Preparing to unpack .../tex-common_5.03_all.deb ... Unpacking tex-common (5.03) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../texlive-binaries_2014.20140926.35254-6_amd64.deb ... Unpacking texlive-binaries (2014.20140926.35254-6) ... Selecting previously unselected package gsfonts. Preparing to unpack .../gsfonts_1%3a8.11+urwcyr1.0.7~pre44-4.2_all.deb ... Unpacking gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Selecting previously unselected package ghostscript. Preparing to unpack .../ghostscript_9.06~dfsg-2+deb8u7_amd64.deb ... Unpacking ghostscript (9.06~dfsg-2+deb8u7) ... Selecting previously unselected package dvipng. Preparing to unpack .../dvipng_1.14-2+b1_amd64.deb ... Unpacking dvipng (1.14-2+b1) ... Selecting previously unselected package libhpdf-2.2.1. Preparing to unpack .../libhpdf-2.2.1_2.2.1-1.1_amd64.deb ... Unpacking libhpdf-2.2.1 (2.2.1-1.1) ... Selecting previously unselected package emboss-lib. Preparing to unpack .../emboss-lib_6.6.0+dfsg-1_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-1) ... Selecting previously unselected package embassy-domainatrix. Preparing to unpack .../embassy-domainatrix_0.1.650-1_amd64.deb ... Unpacking embassy-domainatrix (0.1.650-1) ... Selecting previously unselected package embassy-domalign. Preparing to unpack .../embassy-domalign_0.1.650-1_amd64.deb ... Unpacking embassy-domalign (0.1.650-1) ... Selecting previously unselected package embassy-domsearch. Preparing to unpack .../embassy-domsearch_1%3a0.1.650-1_amd64.deb ... Unpacking embassy-domsearch (1:0.1.650-1) ... Selecting previously unselected package emboss-data. Preparing to unpack .../emboss-data_6.6.0+dfsg-1_all.deb ... Unpacking emboss-data (6.6.0+dfsg-1) ... Selecting previously unselected package emboss. Preparing to unpack .../emboss_6.6.0+dfsg-1_amd64.deb ... Unpacking emboss (6.6.0+dfsg-1) ... Selecting previously unselected package exonerate. Preparing to unpack .../exonerate_2.2.0-6_amd64.deb ... Unpacking exonerate (2.2.0-6) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../libfakeroot_1.20.2-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.20.2-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.20.2-1_amd64.deb ... Unpacking fakeroot (1.20.2-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../python3-pkg-resources_5.5.1-1_all.deb ... Unpacking python3-pkg-resources (5.5.1-1) ... Selecting previously unselected package python3-nose. Preparing to unpack .../python3-nose_1.3.4-1_all.deb ... Unpacking python3-nose (1.3.4-1) ... Selecting previously unselected package fastaq. Preparing to unpack .../fastaq_1.5.0-1_all.deb ... Unpacking fastaq (1.5.0-1) ... Selecting previously unselected package fastdnaml. Preparing to unpack .../fastdnaml_1.2.2-10_amd64.deb ... Unpacking fastdnaml (1.2.2-10) ... Selecting previously unselected package fastjar. Preparing to unpack .../fastjar_2%3a0.98-5_amd64.deb ... Unpacking fastjar (2:0.98-5) ... Selecting previously unselected package fastlink. Preparing to unpack .../fastlink_4.1P-fix95-3_amd64.deb ... Unpacking fastlink (4.1P-fix95-3) ... Selecting previously unselected package libcommons-math3-java. Preparing to unpack .../libcommons-math3-java_3.3-1_all.deb ... Unpacking libcommons-math3-java (3.3-1) ... Selecting previously unselected package libjbzip2-java. Preparing to unpack .../libjbzip2-java_0.9.1-3_all.deb ... Unpacking libjbzip2-java (0.9.1-3) ... Selecting previously unselected package libsam-java. Preparing to unpack .../libsam-java_1.113-1_all.deb ... Unpacking libsam-java (1.113-1) ... Selecting previously unselected package fastqc. Preparing to unpack .../fastqc_0.11.2+dfsg-3_all.deb ... Unpacking fastqc (0.11.2+dfsg-3) ... Selecting previously unselected package libgtextutils0:amd64. Preparing to unpack .../libgtextutils0_0.7-2_amd64.deb ... Unpacking libgtextutils0:amd64 (0.7-2) ... Selecting previously unselected package libgd-text-perl. Preparing to unpack .../libgd-text-perl_0.86-9_all.deb ... Unpacking libgd-text-perl (0.86-9) ... Selecting previously unselected package libgd-graph-perl. Preparing to unpack .../libgd-graph-perl_1.48-2_all.deb ... Unpacking libgd-graph-perl (1.48-2) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../libperlio-gzip-perl_0.18-3+b1_amd64.deb ... Unpacking libperlio-gzip-perl (0.18-3+b1) ... Selecting previously unselected package fastx-toolkit. Preparing to unpack .../fastx-toolkit_0.0.14-1_amd64.deb ... Unpacking fastx-toolkit (0.0.14-1) ... Selecting previously unselected package jarwrapper. Preparing to unpack .../jarwrapper_0.48+deb8u1_all.deb ... Unpacking jarwrapper (0.48+deb8u1) ... Selecting previously unselected package junit. Preparing to unpack .../archives/junit_3.8.2-8_all.deb ... Unpacking junit (3.8.2-8) ... Selecting previously unselected package libnb-org-openide-util-lookup-java. Preparing to unpack .../libnb-org-openide-util-lookup-java_7.4+dfsg1-2_all.deb ... Unpacking libnb-org-openide-util-lookup-java (7.4+dfsg1-2) ... Selecting previously unselected package libnb-org-openide-util-java. Preparing to unpack .../libnb-org-openide-util-java_7.4+dfsg1-2_all.deb ... Unpacking libnb-org-openide-util-java (7.4+dfsg1-2) ... Selecting previously unselected package libfreehep-util-java. Preparing to unpack .../libfreehep-util-java_2.0.2-5_all.deb ... Unpacking libfreehep-util-java (2.0.2-5) ... Selecting previously unselected package libfreehep-swing-java. Preparing to unpack .../libfreehep-swing-java_2.0.3-3_all.deb ... Unpacking libfreehep-swing-java (2.0.3-3) ... Selecting previously unselected package libfreehep-export-java. Preparing to unpack .../libfreehep-export-java_2.1.1-2_all.deb ... Unpacking libfreehep-export-java (2.1.1-2) ... Selecting previously unselected package libfreehep-graphics2d-java. Preparing to unpack .../libfreehep-graphics2d-java_2.1.1-4_all.deb ... Unpacking libfreehep-graphics2d-java (2.1.1-4) ... Selecting previously unselected package libfreehep-io-java. Preparing to unpack .../libfreehep-io-java_2.0.2-4_all.deb ... Unpacking libfreehep-io-java (2.0.2-4) ... Selecting previously unselected package libfreehep-graphicsio-java. Preparing to unpack .../libfreehep-graphicsio-java_2.1.1-3_all.deb ... Unpacking libfreehep-graphicsio-java (2.1.1-3) ... Selecting previously unselected package javahelp2. Preparing to unpack .../javahelp2_2.0.05.ds1-7_all.deb ... Unpacking javahelp2 (2.0.05.ds1-7) ... Selecting previously unselected package libtablelayout-java. Preparing to unpack .../libtablelayout-java_20090826-2_all.deb ... Unpacking libtablelayout-java (20090826-2) ... Selecting previously unselected package libjas-plotter-java. Preparing to unpack .../libjas-plotter-java_2.2.6+dfsg1-2_all.deb ... Unpacking libjas-plotter-java (2.2.6+dfsg1-2) ... Selecting previously unselected package libfreehep-graphicsio-tests-java. Preparing to unpack .../libfreehep-graphicsio-tests-java_2.1.1+dfsg1-3_all.deb ... Unpacking libfreehep-graphicsio-tests-java (2.1.1+dfsg1-3) ... Selecting previously unselected package libfreehep-graphicsio-emf-java. Preparing to unpack .../libfreehep-graphicsio-emf-java_2.1.1-emfplus+dfsg1-2_all.deb ... Unpacking libfreehep-graphicsio-emf-java (2.1.1-emfplus+dfsg1-2) ... Selecting previously unselected package libfreehep-graphicsio-pdf-java. Preparing to unpack .../libfreehep-graphicsio-pdf-java_2.1.1+dfsg-1_all.deb ... Unpacking libfreehep-graphicsio-pdf-java (2.1.1+dfsg-1) ... Selecting previously unselected package libfreehep-graphicsio-ps-java. Preparing to unpack .../libfreehep-graphicsio-ps-java_2.1.1-1_all.deb ... Unpacking libfreehep-graphicsio-ps-java (2.1.1-1) ... Selecting previously unselected package libfreehep-xml-java. Preparing to unpack .../libfreehep-xml-java_2.1.2+dfsg1-3_all.deb ... Unpacking libfreehep-xml-java (2.1.2+dfsg1-3) ... Selecting previously unselected package libfreehep-graphicsio-svg-java. Preparing to unpack .../libfreehep-graphicsio-svg-java_2.1.1-3_all.deb ... Unpacking libfreehep-graphicsio-svg-java (2.1.1-3) ... Selecting previously unselected package libfreehep-graphicsio-swf-java. Preparing to unpack .../libfreehep-graphicsio-swf-java_2.1.1+dfsg-1_all.deb ... Unpacking libfreehep-graphicsio-swf-java (2.1.1+dfsg-1) ... Selecting previously unselected package libitext5-java. Preparing to unpack .../libitext5-java_5.5.3-2_all.deb ... Unpacking libitext5-java (5.5.3-2) ... Selecting previously unselected package libjam-java. Preparing to unpack .../libjam-java_0.0.r304-1_all.deb ... Unpacking libjam-java (0.0.r304-1) ... Selecting previously unselected package libjebl2-java. Preparing to unpack .../libjebl2-java_0.0.r22-1_all.deb ... Unpacking libjebl2-java (0.0.r22-1) ... Selecting previously unselected package figtree. Preparing to unpack .../archives/figtree_1.4-2_all.deb ... Unpacking figtree (1.4-2) ... Selecting previously unselected package filo. Preparing to unpack .../filo_1.1+2011123001.1_amd64.deb ... Unpacking filo (1.1+2011123001.1) ... Selecting previously unselected package python-pyrex. Preparing to unpack .../python-pyrex_0.9.8.5-2.1_all.deb ... Unpacking python-pyrex (0.9.8.5-2.1) ... Selecting previously unselected package python-pysam. Preparing to unpack .../python-pysam_0.7.7-1_amd64.deb ... Unpacking python-pysam (0.7.7-1) ... Selecting previously unselected package fitgcp. Preparing to unpack .../fitgcp_0.0.20130418-2_amd64.deb ... Unpacking fitgcp (0.0.20130418-2) ... Selecting previously unselected package libtbb2. Preparing to unpack .../libtbb2_4.2~20140122-5_amd64.deb ... Unpacking libtbb2 (4.2~20140122-5) ... Selecting previously unselected package flexbar. Preparing to unpack .../flexbar_2.50-1_amd64.deb ... Unpacking flexbar (2.50-1) ... Selecting previously unselected package fonts-cabin. Preparing to unpack .../fonts-cabin_1.5-2_all.deb ... Unpacking fonts-cabin (1.5-2) ... Selecting previously unselected package fonts-comfortaa. Preparing to unpack .../fonts-comfortaa_2.003-1_all.deb ... Unpacking fonts-comfortaa (2.003-1) ... Selecting previously unselected package fonts-crosextra-caladea. Preparing to unpack .../fonts-crosextra-caladea_20130214-1_all.deb ... Unpacking fonts-crosextra-caladea (20130214-1) ... Selecting previously unselected package fonts-crosextra-carlito. Preparing to unpack .../fonts-crosextra-carlito_20130920-1_all.deb ... Unpacking fonts-crosextra-carlito (20130920-1) ... Selecting previously unselected package fonts-dejavu-extra. Preparing to unpack .../fonts-dejavu-extra_2.34-1_all.deb ... Unpacking fonts-dejavu-extra (2.34-1) ... Selecting previously unselected package fonts-dejavu. Preparing to unpack .../fonts-dejavu_2.34-1_all.deb ... Unpacking fonts-dejavu (2.34-1) ... Selecting previously unselected package fonts-ebgaramond. Preparing to unpack .../fonts-ebgaramond_0.015+git20130628-3_all.deb ... Unpacking fonts-ebgaramond (0.015+git20130628-3) ... Selecting previously unselected package fonts-ebgaramond-extra. Preparing to unpack .../fonts-ebgaramond-extra_0.015+git20130628-3_all.deb ... Unpacking fonts-ebgaramond-extra (0.015+git20130628-3) ... Selecting previously unselected package fonts-font-awesome. Preparing to unpack .../fonts-font-awesome_4.2.0~dfsg-1_all.deb ... Unpacking fonts-font-awesome (4.2.0~dfsg-1) ... Selecting previously unselected package fonts-freefont-otf. Preparing to unpack .../fonts-freefont-otf_20120503-4_all.deb ... Unpacking fonts-freefont-otf (20120503-4) ... Selecting previously unselected package fonts-gfs-artemisia. Preparing to unpack .../fonts-gfs-artemisia_1.1-5_all.deb ... Unpacking fonts-gfs-artemisia (1.1-5) ... Selecting previously unselected package fonts-gfs-complutum. Preparing to unpack .../fonts-gfs-complutum_1.1-6_all.deb ... Unpacking fonts-gfs-complutum (1.1-6) ... Selecting previously unselected package fonts-gfs-didot. Preparing to unpack .../fonts-gfs-didot_1.1-6_all.deb ... Unpacking fonts-gfs-didot (1.1-6) ... Selecting previously unselected package fonts-gfs-neohellenic. Preparing to unpack .../fonts-gfs-neohellenic_1.1-6_all.deb ... Unpacking fonts-gfs-neohellenic (1.1-6) ... Selecting previously unselected package fonts-gfs-olga. Preparing to unpack .../fonts-gfs-olga_1.1-5_all.deb ... Unpacking fonts-gfs-olga (1.1-5) ... Selecting previously unselected package fonts-gfs-solomos. Preparing to unpack .../fonts-gfs-solomos_1.1-5_all.deb ... Unpacking fonts-gfs-solomos (1.1-5) ... Selecting previously unselected package fonts-inconsolata. Preparing to unpack .../fonts-inconsolata_001.010-5_all.deb ... Unpacking fonts-inconsolata (001.010-5) ... Selecting previously unselected package fonts-junicode. Preparing to unpack .../fonts-junicode_0.7.8-2_all.deb ... Unpacking fonts-junicode (0.7.8-2) ... Selecting previously unselected package fonts-linuxlibertine. Preparing to unpack .../fonts-linuxlibertine_5.3.0-2_all.deb ... Unpacking fonts-linuxlibertine (5.3.0-2) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../fonts-lmodern_2.004.4-5_all.deb ... Unpacking fonts-lmodern (2.004.4-5) ... Selecting previously unselected package fonts-lobster. Preparing to unpack .../fonts-lobster_2.0-2_all.deb ... Unpacking fonts-lobster (2.0-2) ... Selecting previously unselected package fonts-lobstertwo. Preparing to unpack .../fonts-lobstertwo_2.0-2_all.deb ... Unpacking fonts-lobstertwo (2.0-2) ... Selecting previously unselected package fonts-oflb-asana-math. Preparing to unpack .../fonts-oflb-asana-math_000.907-6_all.deb ... Unpacking fonts-oflb-asana-math (000.907-6) ... Selecting previously unselected package fonts-sil-gentium. Preparing to unpack .../fonts-sil-gentium_20081126%3a1.02-13_all.deb ... Unpacking fonts-sil-gentium (20081126:1.02-13) ... Selecting previously unselected package fonts-sil-gentium-basic. Preparing to unpack .../fonts-sil-gentium-basic_1.1-7_all.deb ... Unpacking fonts-sil-gentium-basic (1.1-7) ... Selecting previously unselected package fonts-texgyre. Preparing to unpack .../fonts-texgyre_20140520-1_all.deb ... Unpacking fonts-texgyre (20140520-1) ... Selecting previously unselected package ttf-dejavu-core. Preparing to unpack .../ttf-dejavu-core_2.34-1_all.deb ... Unpacking ttf-dejavu-core (2.34-1) ... Selecting previously unselected package ttf-dejavu-extra. Preparing to unpack .../ttf-dejavu-extra_2.34-1_all.deb ... Unpacking ttf-dejavu-extra (2.34-1) ... Selecting previously unselected package ttf-dejavu. Preparing to unpack .../ttf-dejavu_2.34-1_all.deb ... Unpacking ttf-dejavu (2.34-1) ... Selecting previously unselected package libgtkglext1. Preparing to unpack .../libgtkglext1_1.2.0-3.2_amd64.deb ... Unpacking libgtkglext1 (1.2.0-3.2) ... Selecting previously unselected package gamgi. Preparing to unpack .../gamgi_0.17.1-1_amd64.deb ... Unpacking gamgi (0.17.1-1) ... Selecting previously unselected package garlic. Preparing to unpack .../garlic_1.6-1.1_amd64.deb ... Unpacking garlic (1.6-1.1) ... Selecting previously unselected package python-reportlab-accel:amd64. Preparing to unpack .../python-reportlab-accel_3.1.8-3+deb8u1_amd64.deb ... Unpacking python-reportlab-accel:amd64 (3.1.8-3+deb8u1) ... Selecting previously unselected package python-reportlab. Preparing to unpack .../python-reportlab_3.1.8-3+deb8u1_all.deb ... Unpacking python-reportlab (3.1.8-3+deb8u1) ... Selecting previously unselected package python-biopython. Preparing to unpack .../python-biopython_1.64+dfsg-5_amd64.deb ... Unpacking python-biopython (1.64+dfsg-5) ... Selecting previously unselected package bowtie. Preparing to unpack .../bowtie_1.1.1-2_amd64.deb ... Unpacking bowtie (1.1.1-2) ... Selecting previously unselected package bowtie2. Preparing to unpack .../bowtie2_2.2.4-1_amd64.deb ... Unpacking bowtie2 (2.2.4-1) ... Selecting previously unselected package seqan-apps. Preparing to unpack .../seqan-apps_1.4.1+dfsg-2_amd64.deb ... Unpacking seqan-apps (1.4.1+dfsg-2) ... Selecting previously unselected package gasic. Preparing to unpack .../gasic_0.0.r18-2_amd64.deb ... Unpacking gasic (0.0.r18-2) ... Selecting previously unselected package libbio-graphics-perl. Preparing to unpack .../libbio-graphics-perl_2.39-2_all.deb ... Unpacking libbio-graphics-perl (2.39-2) ... Selecting previously unselected package libcgi-session-perl. Preparing to unpack .../libcgi-session-perl_4.48-1+deb8u1_all.deb ... Unpacking libcgi-session-perl (4.48-1+deb8u1) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../libjson-perl_2.61-1_all.deb ... Unpacking libjson-perl (2.61-1) ... Selecting previously unselected package libstatistics-descriptive-perl. Preparing to unpack .../libstatistics-descriptive-perl_3.0607-1_all.deb ... Unpacking libstatistics-descriptive-perl (3.0607-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../libencode-locale-perl_1.03-1_all.deb ... Unpacking libencode-locale-perl (1.03-1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../libhttp-date-perl_6.02-1_all.deb ... Unpacking libhttp-date-perl (6.02-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../liburi-perl_1.64-1_all.deb ... Unpacking liburi-perl (1.64-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../libhtml-tagset-perl_3.20-2_all.deb ... Unpacking libhtml-tagset-perl (3.20-2) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../libhtml-parser-perl_3.71-1+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.71-1+b3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../libhtml-tree-perl_5.03-1_all.deb ... Unpacking libhtml-tree-perl (5.03-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../libio-html-perl_1.001-1_all.deb ... Unpacking libio-html-perl (1.001-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../liblwp-mediatypes-perl_6.02-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.02-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../libhttp-message-perl_6.06-1_all.deb ... Unpacking libhttp-message-perl (6.06-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../libhttp-cookies-perl_6.01-1_all.deb ... Unpacking libhttp-cookies-perl (6.01-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../libhttp-negotiate-perl_6.00-2_all.deb ... Unpacking libhttp-negotiate-perl (6.00-2) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../libnet-ssleay-perl_1.65-1+deb8u1_amd64.deb ... Unpacking libnet-ssleay-perl (1.65-1+deb8u1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../libio-socket-ssl-perl_2.002-2+deb8u3_all.deb ... Unpacking libio-socket-ssl-perl (2.002-2+deb8u3) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../libnet-http-perl_6.07-1_all.deb ... Unpacking libnet-http-perl (6.07-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../liblwp-protocol-https-perl_6.06-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.06-2) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../libwww-perl_6.08-1_all.deb ... Unpacking libwww-perl (6.08-1) ... Selecting previously unselected package libhttp-daemon-perl. Preparing to unpack .../libhttp-daemon-perl_6.01-1_all.deb ... Unpacking libhttp-daemon-perl (6.01-1) ... Selecting previously unselected package sqlite3. Preparing to unpack .../sqlite3_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking sqlite3 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libdbd-sqlite3-perl. Preparing to unpack .../libdbd-sqlite3-perl_1.44-1_amd64.deb ... Unpacking libdbd-sqlite3-perl (1.44-1) ... Selecting previously unselected package libjs-prototype. Preparing to unpack .../libjs-prototype_1.7.1-3_all.deb ... Unpacking libjs-prototype (1.7.1-3) ... Selecting previously unselected package libjs-scriptaculous. Preparing to unpack .../libjs-scriptaculous_1.9.0-2_all.deb ... Unpacking libjs-scriptaculous (1.9.0-2) ... Selecting previously unselected package libanyevent-perl. Preparing to unpack .../libanyevent-perl_7.070-3_amd64.deb ... Unpacking libanyevent-perl (7.070-3) ... Selecting previously unselected package libanyevent-cachedns-perl. Preparing to unpack .../libanyevent-cachedns-perl_0.08-1_all.deb ... Unpacking libanyevent-cachedns-perl (0.08-1) ... Selecting previously unselected package libcommon-sense-perl. Preparing to unpack .../libcommon-sense-perl_3.73-2+b3_amd64.deb ... Unpacking libcommon-sense-perl (3.73-2+b3) ... Selecting previously unselected package libanyevent-http-perl. Preparing to unpack .../libanyevent-http-perl_2.21-1_all.deb ... Unpacking libanyevent-http-perl (2.21-1) ... Selecting previously unselected package libstring-approx-perl. Preparing to unpack .../libstring-approx-perl_3.27-1+b2_amd64.deb ... Unpacking libstring-approx-perl (3.27-1+b2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.11-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../libxml-sax-base-perl_1.07-1_all.deb ... Unpacking libxml-sax-base-perl (1.07-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../libxml-sax-perl_0.99+dfsg-2_all.deb ... Unpacking libxml-sax-perl (0.99+dfsg-2) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../libxml-libxml-perl_2.0116+dfsg-1+deb8u2_amd64.deb ... Unpacking libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../libxml-parser-perl_2.41-3_amd64.deb ... Unpacking libxml-parser-perl (2.41-3) ... Selecting previously unselected package libxml-sax-expat-perl. Preparing to unpack .../libxml-sax-expat-perl_0.40-2_all.deb ... Unpacking libxml-sax-expat-perl (0.40-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../libxml-simple-perl_2.20-1_all.deb ... Unpacking libxml-simple-perl (2.20-1) ... Selecting previously unselected package libvm-ec2-perl. Preparing to unpack .../libvm-ec2-perl_1.28-1_all.deb ... Unpacking libvm-ec2-perl (1.28-1) ... Selecting previously unselected package gbrowse. Preparing to unpack .../gbrowse_2.54+dfsg-3_all.deb ... Unpacking gbrowse (2.54+dfsg-3) ... Selecting previously unselected package gdpc. Preparing to unpack .../gdpc_2.2.5-3_amd64.deb ... Unpacking gdpc (2.2.5-3) ... Selecting previously unselected package libsqlite0. Preparing to unpack .../libsqlite0_2.8.17-12_amd64.deb ... Unpacking libsqlite0 (2.8.17-12) ... Selecting previously unselected package gentle. Preparing to unpack .../gentle_1.9+cvs20100605+dfsg1-3_amd64.deb ... Unpacking gentle (1.9+cvs20100605+dfsg1-3) ... Selecting previously unselected package gff2aplot. Preparing to unpack .../gff2aplot_2.0-7_amd64.deb ... Unpacking gff2aplot (2.0-7) ... Selecting previously unselected package gff2ps. Preparing to unpack .../gff2ps_0.98d-4_all.deb ... Unpacking gff2ps (0.98d-4) ... Selecting previously unselected package libgfortran-4.9-dev:amd64. Preparing to unpack .../libgfortran-4.9-dev_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgfortran-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package gfortran-4.9. Preparing to unpack .../gfortran-4.9_4.9.2-10+deb8u1_amd64.deb ... Unpacking gfortran-4.9 (4.9.2-10+deb8u1) ... Selecting previously unselected package gfortran. Preparing to unpack .../gfortran_4%3a4.9.2-2_amd64.deb ... Unpacking gfortran (4:4.9.2-2) ... Selecting previously unselected package libglpk-java. Preparing to unpack .../libglpk-java_1.0.37-1_amd64.deb ... Unpacking libglpk-java (1.0.37-1) ... Selecting previously unselected package glpk-utils. Preparing to unpack .../glpk-utils_4.55-1_amd64.deb ... Unpacking glpk-utils (4.55-1) ... Selecting previously unselected package tophat. Preparing to unpack .../tophat_2.0.13+dfsg-1_amd64.deb ... Unpacking tophat (2.0.13+dfsg-1) ... Selecting previously unselected package giira. Preparing to unpack .../giira_0.0.20140210-2_amd64.deb ... Unpacking giira (0.0.20140210-2) ... Selecting previously unselected package glam2. Preparing to unpack .../glam2_1064-3_amd64.deb ... Unpacking glam2 (1064-3) ... Selecting previously unselected package aglfn. Preparing to unpack .../archives/aglfn_1.7-3_all.deb ... Unpacking aglfn (1.7-3) ... Selecting previously unselected package gnuplot-tex. Preparing to unpack .../gnuplot-tex_4.6.6-2_all.deb ... Unpacking gnuplot-tex (4.6.6-2) ... Selecting previously unselected package gnuplot-data. Preparing to unpack .../gnuplot-data_4.6.6-2_all.deb ... Unpacking gnuplot-data (4.6.6-2) ... Selecting previously unselected package gnuplot-qt. Preparing to unpack .../gnuplot-qt_4.6.6-2_amd64.deb ... Unpacking gnuplot-qt (4.6.6-2) ... Selecting previously unselected package gnuplot. Preparing to unpack .../gnuplot_4.6.6-2_all.deb ... Unpacking gnuplot (4.6.6-2) ... Selecting previously unselected package libcdt5. Preparing to unpack .../libcdt5_2.38.0-7_amd64.deb ... Unpacking libcdt5 (2.38.0-7) ... Selecting previously unselected package libcgraph6. Preparing to unpack .../libcgraph6_2.38.0-7_amd64.deb ... Unpacking libcgraph6 (2.38.0-7) ... Selecting previously unselected package libpathplan4. Preparing to unpack .../libpathplan4_2.38.0-7_amd64.deb ... Unpacking libpathplan4 (2.38.0-7) ... Selecting previously unselected package libxdot4. Preparing to unpack .../libxdot4_2.38.0-7_amd64.deb ... Unpacking libxdot4 (2.38.0-7) ... Selecting previously unselected package libgvc6. Preparing to unpack .../libgvc6_2.38.0-7_amd64.deb ... Unpacking libgvc6 (2.38.0-7) ... Selecting previously unselected package libgvpr2. Preparing to unpack .../libgvpr2_2.38.0-7_amd64.deb ... Unpacking libgvpr2 (2.38.0-7) ... Selecting previously unselected package graphviz. Preparing to unpack .../graphviz_2.38.0-7_amd64.deb ... Unpacking graphviz (2.38.0-7) ... Selecting previously unselected package libgetopt-euclid-perl. Preparing to unpack .../libgetopt-euclid-perl_0.4.5-1_all.deb ... Unpacking libgetopt-euclid-perl (0.4.5-1) ... Selecting previously unselected package libmath-random-mt-perl. Preparing to unpack .../libmath-random-mt-perl_1.16-1+b2_amd64.deb ... Unpacking libmath-random-mt-perl (1.16-1+b2) ... Selecting previously unselected package grinder. Preparing to unpack .../grinder_0.5.3-3_all.deb ... Unpacking grinder (0.5.3-3) ... Selecting previously unselected package gstreamer1.0-plugins-base:amd64. Preparing to unpack .../gstreamer1.0-plugins-base_1.4.4-2+deb8u1_amd64.deb ... Unpacking gstreamer1.0-plugins-base:amd64 (1.4.4-2+deb8u1) ... Selecting previously unselected package hmmer. Preparing to unpack .../hmmer_3.1b1-3_amd64.deb ... Unpacking hmmer (3.1b1-3) ... Selecting previously unselected package libpvm3. Preparing to unpack .../libpvm3_3.4.5-12.6_amd64.deb ... Unpacking libpvm3 (3.4.5-12.6) ... Selecting previously unselected package hmmer2. Preparing to unpack .../hmmer2_2.3.2-8_amd64.deb ... Unpacking hmmer2 (2.3.2-8) ... Selecting previously unselected package idba. Preparing to unpack .../idba_1.1.2-1_amd64.deb ... Unpacking idba (1.1.2-1) ... Selecting previously unselected package imagemagick-6.q16. Preparing to unpack .../imagemagick-6.q16_8%3a6.8.9.9-5+deb8u12_amd64.deb ... Unpacking imagemagick-6.q16 (8:6.8.9.9-5+deb8u12) ... Selecting previously unselected package imagemagick. Preparing to unpack .../imagemagick_8%3a6.8.9.9-5+deb8u12_amd64.deb ... Unpacking imagemagick (8:6.8.9.9-5+deb8u12) ... Selecting previously unselected package infernal. Preparing to unpack .../infernal_1.1.1-2_amd64.deb ... Unpacking infernal (1.1.1-2) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../libcommons-compress-java_1.9-1_all.deb ... Unpacking libcommons-compress-java (1.9-1) ... Selecting previously unselected package libcommons-net1-java. Preparing to unpack .../libcommons-net1-java_1.4.1-5_all.deb ... Unpacking libcommons-net1-java (1.4.1-5) ... Selecting previously unselected package ipig. Preparing to unpack .../ipig_0.0.r5-1_amd64.deb ... Unpacking ipig (0.0.r5-1) ... Selecting previously unselected package python-pexpect. Preparing to unpack .../python-pexpect_3.2-1_all.deb ... Unpacking python-pexpect (3.2-1) ... Selecting previously unselected package python-simplegeneric. Preparing to unpack .../python-simplegeneric_0.8.1-1_all.deb ... Unpacking python-simplegeneric (0.8.1-1) ... Selecting previously unselected package ipython. Preparing to unpack .../ipython_2.3.0-2_all.deb ... Unpacking ipython (2.3.0-2) ... Selecting previously unselected package unzip. Preparing to unpack .../unzip_6.0-16+deb8u3_amd64.deb ... Unpacking unzip (6.0-16+deb8u3) ... Selecting previously unselected package java-wrappers. Preparing to unpack .../java-wrappers_0.1.28_all.deb ... Unpacking java-wrappers (0.1.28) ... Selecting previously unselected package libjmol-java. Preparing to unpack .../libjmol-java_12.2.32+dfsg2-1_all.deb ... Unpacking libjmol-java (12.2.32+dfsg2-1) ... Selecting previously unselected package icedtea-netx-common. Preparing to unpack .../icedtea-netx-common_1.5.3-1_all.deb ... Unpacking icedtea-netx-common (1.5.3-1) ... Selecting previously unselected package jmol-applet. Preparing to unpack .../jmol-applet_12.2.32+dfsg2-1_all.deb ... Unpacking jmol-applet (12.2.32+dfsg2-1) ... Selecting previously unselected package libcommons-io-java. Preparing to unpack .../libcommons-io-java_2.4-2_all.deb ... Unpacking libcommons-io-java (2.4-2) ... Selecting previously unselected package libapache-mime4j-java. Preparing to unpack .../libapache-mime4j-java_0.7.2-3_all.deb ... Unpacking libapache-mime4j-java (0.7.2-3) ... Selecting previously unselected package libcastor-core-java. Preparing to unpack .../libcastor-core-java_1.3.2-3_all.deb ... Unpacking libcastor-core-java (1.3.2-3) ... Selecting previously unselected package libcastor-xml-java. Preparing to unpack .../libcastor-xml-java_1.3.2-3_all.deb ... Unpacking libcastor-xml-java (1.3.2-3) ... Selecting previously unselected package libhttpcore-java. Preparing to unpack .../libhttpcore-java_4.3.3-1_all.deb ... Unpacking libhttpcore-java (4.3.3-1) ... Selecting previously unselected package libhttpclient-java. Preparing to unpack .../libhttpclient-java_4.3.5-2_all.deb ... Unpacking libhttpclient-java (4.3.5-2) ... Selecting previously unselected package libhttpmime-java. Preparing to unpack .../libhttpmime-java_4.3.5-2_all.deb ... Unpacking libhttpmime-java (4.3.5-2) ... Selecting previously unselected package libjaba-client-java. Preparing to unpack .../libjaba-client-java_0+dfsg-1_all.deb ... Unpacking libjaba-client-java (0+dfsg-1) ... Selecting previously unselected package libgnuinet-java. Preparing to unpack .../libgnuinet-java_1.1.2-2_all.deb ... Unpacking libgnuinet-java (1.1.2-2) ... Selecting previously unselected package libgnumail-java. Preparing to unpack .../libgnumail-java_1.1.2-9_all.deb ... Unpacking libgnumail-java (1.1.2-9) ... Selecting previously unselected package libjswingreader-java. Preparing to unpack .../libjswingreader-java_0.3-1_all.deb ... Unpacking libjswingreader-java (0.3-1) ... Selecting previously unselected package libmiglayout-java. Preparing to unpack .../libmiglayout-java_4.2-1_all.deb ... Unpacking libmiglayout-java (4.2-1) ... Selecting previously unselected package libvamsas-client-java. Preparing to unpack .../libvamsas-client-java_0.2~git2011.10.17+1b42648-1_all.deb ... Unpacking libvamsas-client-java (0.2~git2011.10.17+1b42648-1) ... Selecting previously unselected package openjdk-7-jdk:amd64. Preparing to unpack .../openjdk-7-jdk_7u181-2.6.14-1~deb8u1_amd64.deb ... Unpacking openjdk-7-jdk:amd64 (7u181-2.6.14-1~deb8u1) ... Selecting previously unselected package jalview. Preparing to unpack .../jalview_2.7.dfsg-4_all.deb ... Unpacking jalview (2.7.dfsg-4) ... Selecting previously unselected package javascript-common. Preparing to unpack .../javascript-common_11_all.deb ... Unpacking javascript-common (11) ... Selecting previously unselected package libjellyfish-2.0-2. Preparing to unpack .../libjellyfish-2.0-2_2.1.4-1_amd64.deb ... Unpacking libjellyfish-2.0-2 (2.1.4-1) ... Selecting previously unselected package jellyfish. Preparing to unpack .../jellyfish_2.1.4-1_amd64.deb ... Unpacking jellyfish (2.1.4-1) ... Selecting previously unselected package jmol. Preparing to unpack .../jmol_12.2.32+dfsg2-1_all.deb ... Unpacking jmol (12.2.32+dfsg2-1) ... Selecting previously unselected package kalign. Preparing to unpack .../kalign_1%3a2.03+20110620-2_amd64.deb ... Unpacking kalign (1:2.03+20110620-2) ... Selecting previously unselected package libbcprov-java. Preparing to unpack .../libbcprov-java_1.49+dfsg-3+deb8u2_all.deb ... Unpacking libbcprov-java (1.49+dfsg-3+deb8u2) ... Selecting previously unselected package libbcpkix-java. Preparing to unpack .../libbcpkix-java_1.49+dfsg-3+deb8u2_all.deb ... Unpacking libbcpkix-java (1.49+dfsg-3+deb8u2) ... Selecting previously unselected package libbcmail-java. Preparing to unpack .../libbcmail-java_1.49+dfsg-3+deb8u2_all.deb ... Unpacking libbcmail-java (1.49+dfsg-3+deb8u2) ... Selecting previously unselected package libitext-java. Preparing to unpack .../libitext-java_2.1.7-9_all.deb ... Unpacking libitext-java (2.1.7-9) ... Selecting previously unselected package king. Preparing to unpack .../king_2.21.120420+dfsg-1_all.deb ... Unpacking king (2.21.120420+dfsg-1) ... Selecting previously unselected package kissplice. Preparing to unpack .../kissplice_2.2.1-3_amd64.deb ... Unpacking kissplice (2.2.1-3) ... Selecting previously unselected package ksh. Preparing to unpack .../ksh_93u+20120801-1_amd64.deb ... Unpacking ksh (93u+20120801-1) ... Selecting previously unselected package laptop-detect. Preparing to unpack .../laptop-detect_0.13.7_amd64.deb ... Unpacking laptop-detect (0.13.7) ... Selecting previously unselected package last-align. Preparing to unpack .../last-align_490-1_amd64.deb ... Unpacking last-align (490-1) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../liberror-perl_0.17-1.1_all.deb ... Unpacking liberror-perl (0.17-1.1) ... Selecting previously unselected package libipc-sharelite-perl. Preparing to unpack .../libipc-sharelite-perl_0.17-3+b2_amd64.deb ... Unpacking libipc-sharelite-perl (0.17-3+b2) ... Selecting previously unselected package libcache-cache-perl. Preparing to unpack .../libcache-cache-perl_1.07-2_all.deb ... Unpacking libcache-cache-perl (1.07-2) ... Selecting previously unselected package libace-perl. Preparing to unpack .../libace-perl_1.92-3+b1_amd64.deb ... Unpacking libace-perl (1.92-3+b1) ... Selecting previously unselected package libai-fann-perl. Preparing to unpack .../libai-fann-perl_0.10-2+b1_amd64.deb ... Unpacking libai-fann-perl (0.10-2+b1) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../libalgorithm-c3-perl_0.09-1_all.deb ... Unpacking libalgorithm-c3-perl (0.09-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../libalgorithm-diff-perl_1.19.02-3_all.deb ... Unpacking libalgorithm-diff-perl (1.19.02-3) ... Selecting previously unselected package libalgorithm-diff-xs-perl. Preparing to unpack .../libalgorithm-diff-xs-perl_0.04-3+b1_amd64.deb ... Unpacking libalgorithm-diff-xs-perl (0.04-3+b1) ... Selecting previously unselected package libalgorithm-merge-perl. Preparing to unpack .../libalgorithm-merge-perl_0.08-2_all.deb ... Unpacking libalgorithm-merge-perl (0.08-2) ... Selecting previously unselected package libalgorithm-munkres-perl. Preparing to unpack .../libalgorithm-munkres-perl_0.08-2_all.deb ... Unpacking libalgorithm-munkres-perl (0.08-2) ... Selecting previously unselected package libperl5.20. Preparing to unpack .../libperl5.20_5.20.2-3+deb8u11_amd64.deb ... Unpacking libperl5.20 (5.20.2-3+deb8u11) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../libdevel-symdump-perl_2.12-1_all.deb ... Unpacking libdevel-symdump-perl (2.12-1) ... Selecting previously unselected package libapache2-mod-perl2. Preparing to unpack .../libapache2-mod-perl2_2.0.9~1624218-2+deb8u2_amd64.deb ... Unpacking libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Selecting previously unselected package libapache-dbi-perl. Preparing to unpack .../libapache-dbi-perl_1.12-1_all.deb ... Unpacking libapache-dbi-perl (1.12-1) ... Selecting previously unselected package libapache2-reload-perl. Preparing to unpack .../libapache2-reload-perl_0.12-3_all.deb ... Unpacking libapache2-reload-perl (0.12-3) ... Selecting previously unselected package libarchive-extract-perl. Preparing to unpack .../libarchive-extract-perl_0.72-1_all.deb ... Unpacking libarchive-extract-perl (0.72-1) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../libclass-method-modifiers-perl_2.11-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.11-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../libsub-exporter-progressive-perl_0.001011-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001011-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../libdevel-globaldestruction-perl_0.13-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.13-1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../libimport-into-perl_1.002004-1_all.deb ... Unpacking libimport-into-perl (1.002004-1) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../librole-tiny-perl_1.003004-1_all.deb ... Unpacking librole-tiny-perl (1.003004-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../libstrictures-perl_1.005005-1_all.deb ... Unpacking libstrictures-perl (1.005005-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../libmoo-perl_1.006001-1_all.deb ... Unpacking libmoo-perl (1.006001-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../libexporter-tiny-perl_0.038-2_all.deb ... Unpacking libexporter-tiny-perl (0.038-2) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../libtype-tiny-perl_1.000004-1_all.deb ... Unpacking libtype-tiny-perl (1.000004-1) ... Selecting previously unselected package libarray-compare-perl. Preparing to unpack .../libarray-compare-perl_2.11-1_all.deb ... Unpacking libarray-compare-perl (2.11-1) ... Selecting previously unselected package libasprintf-dev:amd64. Preparing to unpack .../libasprintf-dev_0.19.3-2_amd64.deb ... Unpacking libasprintf-dev:amd64 (0.19.3-2) ... Selecting previously unselected package libasync-interrupt-perl. Preparing to unpack .../libasync-interrupt-perl_1.20-1+b1_amd64.deb ... Unpacking libasync-interrupt-perl (1.20-1+b1) ... Selecting previously unselected package libauthen-sasl-perl. Preparing to unpack .../libauthen-sasl-perl_2.1600-1_all.deb ... Unpacking libauthen-sasl-perl (2.1600-1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../libb-hooks-op-check-perl_0.19-2+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.19-2+b1) ... Selecting previously unselected package libbambamc0. Preparing to unpack .../libbambamc0_0.0.50-1_amd64.deb ... Unpacking libbambamc0 (0.0.50-1) ... Selecting previously unselected package liblexical-sealrequirehints-perl. Preparing to unpack .../liblexical-sealrequirehints-perl_0.007-1+b2_amd64.deb ... Unpacking liblexical-sealrequirehints-perl (0.007-1+b2) ... Selecting previously unselected package libbareword-filehandles-perl. Preparing to unpack .../libbareword-filehandles-perl_0.003-1+b2_amd64.deb ... Unpacking libbareword-filehandles-perl (0.003-1+b2) ... Selecting previously unselected package libbio-asn1-entrezgene-perl. Preparing to unpack .../libbio-asn1-entrezgene-perl_1.700-1_all.deb ... Unpacking libbio-asn1-entrezgene-perl (1.700-1) ... Selecting previously unselected package libstaden-read1. Preparing to unpack .../libstaden-read1_1.13.7-1_amd64.deb ... Unpacking libstaden-read1 (1.13.7-1) ... Selecting previously unselected package libbio-scf-perl. Preparing to unpack .../libbio-scf-perl_1.03-2+b1_amd64.deb ... Unpacking libbio-scf-perl (1.03-2+b1) ... Selecting previously unselected package libcarp-clan-perl. Preparing to unpack .../libcarp-clan-perl_6.04-1_all.deb ... Unpacking libcarp-clan-perl (6.04-1) ... Selecting previously unselected package libbit-vector-perl. Preparing to unpack .../libbit-vector-perl_7.3-1+b2_amd64.deb ... Unpacking libbit-vector-perl (7.3-1+b2) ... Selecting previously unselected package libblas-dev. Preparing to unpack .../libblas-dev_1.2.20110419-10_amd64.deb ... Unpacking libblas-dev (1.2.20110419-10) ... Selecting previously unselected package libbsd-resource-perl. Preparing to unpack .../libbsd-resource-perl_1.2907-1+b2_amd64.deb ... Unpacking libbsd-resource-perl (1.2907-1+b2) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../libbz2-dev_1.0.6-7+b3_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-7+b3) ... Selecting previously unselected package libcanberra-gtk3-module:amd64. Preparing to unpack .../libcanberra-gtk3-module_0.30-2.1_amd64.deb ... Unpacking libcanberra-gtk3-module:amd64 (0.30-2.1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../libcgi-pm-perl_4.09-1_all.deb ... Unpacking libcgi-pm-perl (4.09-1) ... Selecting previously unselected package libfcgi-perl. Preparing to unpack .../libfcgi-perl_0.77-1+deb8u1_amd64.deb ... Unpacking libfcgi-perl (0.77-1+deb8u1) ... Selecting previously unselected package libcgi-fast-perl. Preparing to unpack .../libcgi-fast-perl_1%3a2.04-1_all.deb ... Unpacking libcgi-fast-perl (1:2.04-1) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../libclass-c3-perl_0.26-1_all.deb ... Unpacking libclass-c3-perl (0.26-1) ... Selecting previously unselected package libclass-c3-xs-perl. Preparing to unpack .../libclass-c3-xs-perl_0.13-2+b1_amd64.deb ... Unpacking libclass-c3-xs-perl (0.13-2+b1) ... Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../libclass-inspector-perl_1.28-1_all.deb ... Unpacking libclass-inspector-perl (1.28-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../libclass-xsaccessor-perl_1.19-2+b4_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-2+b4) ... Selecting previously unselected package libcofoja-java. Preparing to unpack .../libcofoja-java_1.1-r150-2_all.deb ... Unpacking libcofoja-java (1.1-r150-2) ... Selecting previously unselected package libcommons-jexl2-java. Preparing to unpack .../libcommons-jexl2-java_2.1.1-2_all.deb ... Unpacking libcommons-jexl2-java (2.1.1-2) ... Selecting previously unselected package libconvert-binary-c-perl. Preparing to unpack .../libconvert-binary-c-perl_0.76-3+b2_amd64.deb ... Unpacking libconvert-binary-c-perl (0.76-3+b2) ... Selecting previously unselected package libconvert-binhex-perl. Preparing to unpack .../libconvert-binhex-perl_1.123-2_all.deb ... Unpacking libconvert-binhex-perl (1.123-2) ... Selecting previously unselected package libcpan-meta-perl. Preparing to unpack .../libcpan-meta-perl_2.142690-1_all.deb ... Unpacking libcpan-meta-perl (2.142690-1) ... Selecting previously unselected package libcrypt-rc4-perl. Preparing to unpack .../libcrypt-rc4-perl_2.02-2_all.deb ... Unpacking libcrypt-rc4-perl (2.02-2) ... Selecting previously unselected package libcrypt-ssleay-perl. Preparing to unpack .../libcrypt-ssleay-perl_0.58-1+b2_amd64.deb ... Unpacking libcrypt-ssleay-perl (0.58-1+b2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../libparams-util-perl_1.07-2+b1_amd64.deb ... Unpacking libparams-util-perl (1.07-2+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../libsub-install-perl_0.928-1_all.deb ... Unpacking libsub-install-perl (0.928-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../libdata-optlist-perl_0.109-1_all.deb ... Unpacking libdata-optlist-perl (0.109-1) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../libmro-compat-perl_0.12-1_all.deb ... Unpacking libmro-compat-perl (0.12-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../libsub-exporter-perl_0.986-1_all.deb ... Unpacking libsub-exporter-perl (0.986-1) ... Selecting previously unselected package libdata-section-perl. Preparing to unpack .../libdata-section-perl_0.200006-1_all.deb ... Unpacking libdata-section-perl (0.200006-1) ... Selecting previously unselected package libdate-calc-perl. Preparing to unpack .../libdate-calc-perl_6.3-2_all.deb ... Unpacking libdate-calc-perl (6.3-2) ... Selecting previously unselected package libdate-calc-xs-perl. Preparing to unpack .../libdate-calc-xs-perl_6.3-2_amd64.deb ... Unpacking libdate-calc-xs-perl (6.3-2) ... Selecting previously unselected package libdate-manip-perl. Preparing to unpack .../libdate-manip-perl_6.47-1_all.deb ... Unpacking libdate-manip-perl (6.47-1) ... Selecting previously unselected package libdbd-pg-perl. Preparing to unpack .../libdbd-pg-perl_3.4.2-1_amd64.deb ... Unpacking libdbd-pg-perl (3.4.2-1) ... Selecting previously unselected package libpadwalker-perl. Preparing to unpack .../libpadwalker-perl_1.98-1+b1_amd64.deb ... Unpacking libpadwalker-perl (1.98-1+b1) ... Selecting previously unselected package libdevel-caller-perl. Preparing to unpack .../libdevel-caller-perl_2.06-1+b2_amd64.deb ... Unpacking libdevel-caller-perl (2.06-1+b2) ... Selecting previously unselected package libdevel-lexalias-perl. Preparing to unpack .../libdevel-lexalias-perl_0.05-1+b2_amd64.deb ... Unpacking libdevel-lexalias-perl (0.05-1+b2) ... Selecting previously unselected package libdigest-perl-md5-perl. Preparing to unpack .../libdigest-perl-md5-perl_1.9-1_all.deb ... Unpacking libdigest-perl-md5-perl (1.9-1) ... Selecting previously unselected package libfile-chdir-perl. Preparing to unpack .../libfile-chdir-perl_0.1008-1_all.deb ... Unpacking libfile-chdir-perl (0.1008-1) ... Selecting previously unselected package libfile-copy-recursive-perl. Preparing to unpack .../libfile-copy-recursive-perl_0.38-1_all.deb ... Unpacking libfile-copy-recursive-perl (0.38-1) ... Selecting previously unselected package libfile-desktopentry-perl. Preparing to unpack .../libfile-desktopentry-perl_0.07-1_all.deb ... Unpacking libfile-desktopentry-perl (0.07-1) ... Selecting previously unselected package libfile-fcntllock-perl. Preparing to unpack .../libfile-fcntllock-perl_0.22-1+b1_amd64.deb ... Unpacking libfile-fcntllock-perl (0.22-1+b1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../libfile-which-perl_1.09-1_all.deb ... Unpacking libfile-which-perl (1.09-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../libfile-homedir-perl_1.00-1_all.deb ... Unpacking libfile-homedir-perl (1.00-1) ... Selecting previously unselected package libfile-mimeinfo-perl. Preparing to unpack .../libfile-mimeinfo-perl_0.26-1_all.deb ... Unpacking libfile-mimeinfo-perl (0.26-1) ... Selecting previously unselected package libfile-slurp-tiny-perl. Preparing to unpack .../libfile-slurp-tiny-perl_0.003-1_all.deb ... Unpacking libfile-slurp-tiny-perl (0.003-1) ... Selecting previously unselected package libfont-afm-perl. Preparing to unpack .../libfont-afm-perl_1.20-1_all.deb ... Unpacking libfont-afm-perl (1.20-1) ... Selecting previously unselected package libfreezethaw-perl. Preparing to unpack .../libfreezethaw-perl_0.5001-1_all.deb ... Unpacking libfreezethaw-perl (0.5001-1) ... Selecting previously unselected package libg20. Preparing to unpack .../libg20_0.72-5+b1_amd64.deb ... Unpacking libg20 (0.72-5+b1) ... Selecting previously unselected package libsvg-perl. Preparing to unpack .../libsvg-perl_2.59-1_all.deb ... Unpacking libsvg-perl (2.59-1) ... Selecting previously unselected package libgd-svg-perl. Preparing to unpack .../libgd-svg-perl_0.33-1_all.deb ... Unpacking libgd-svg-perl (0.33-1) ... Selecting previously unselected package libgettextpo-dev:amd64. Preparing to unpack .../libgettextpo-dev_0.19.3-2_amd64.deb ... Unpacking libgettextpo-dev:amd64 (0.19.3-2) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../libglib2.0-data_2.42.1-1_all.deb ... Unpacking libglib2.0-data (2.42.1-1) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../libgmp-dev_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../libio-pty-perl_1%3a1.08-1+b4_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1+b4) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../libipc-run-perl_0.92-1+deb8u1_all.deb ... Unpacking libipc-run-perl (0.92-1+deb8u1) ... Selecting previously unselected package libxml-twig-perl. Preparing to unpack .../libxml-twig-perl_1%3a3.48-1_all.deb ... Unpacking libxml-twig-perl (1:3.48-1) ... Selecting previously unselected package libxml-xpath-perl. Preparing to unpack .../libxml-xpath-perl_1.13-7_all.deb ... Unpacking libxml-xpath-perl (1.13-7) ... Selecting previously unselected package libparse-recdescent-perl. Preparing to unpack .../libparse-recdescent-perl_1.967009+dfsg-1_all.deb ... Unpacking libparse-recdescent-perl (1.967009+dfsg-1) ... Selecting previously unselected package libgraphviz-perl. Preparing to unpack .../libgraphviz-perl_2.16-1_all.deb ... Unpacking libgraphviz-perl (2.16-1) ... Selecting previously unselected package libgo-perl. Preparing to unpack .../libgo-perl_0.15-1_all.deb ... Unpacking libgo-perl (0.15-1) ... Selecting previously unselected package libgphoto2-l10n. Preparing to unpack .../libgphoto2-l10n_2.5.4-1.1_all.deb ... Unpacking libgphoto2-l10n (2.5.4-1.1) ... Selecting previously unselected package libheap-perl. Preparing to unpack .../libheap-perl_0.80-2_all.deb ... Unpacking libheap-perl (0.80-2) ... Selecting previously unselected package libgraph-perl. Preparing to unpack .../libgraph-perl_1%3a0.96-1.1_all.deb ... Unpacking libgraph-perl (1:0.96-1.1) ... Selecting previously unselected package libgtk2.0-bin. Preparing to unpack .../libgtk2.0-bin_2.24.25-3+deb8u2_amd64.deb ... Unpacking libgtk2.0-bin (2.24.25-3+deb8u2) ... Selecting previously unselected package libguard-perl. Preparing to unpack .../libguard-perl_1.022-2+b1_amd64.deb ... Unpacking libguard-perl (1.022-2+b1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../libhtml-form-perl_6.03-1_all.deb ... Unpacking libhtml-form-perl (6.03-1) ... Selecting previously unselected package libhtml-format-perl. Preparing to unpack .../libhtml-format-perl_2.11-1_all.deb ... Unpacking libhtml-format-perl (2.11-1) ... Selecting previously unselected package libhtml-tableextract-perl. Preparing to unpack .../libhtml-tableextract-perl_2.11-1_all.deb ... Unpacking libhtml-tableextract-perl (2.11-1) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../xorg-sgml-doctools_1%3a1.11-1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1) ... Selecting previously unselected package x11proto-core-dev. Preparing to unpack .../x11proto-core-dev_7.0.26-1_all.deb ... Unpacking x11proto-core-dev (7.0.26-1) ... Selecting previously unselected package libice-dev:amd64. Preparing to unpack .../libice-dev_2%3a1.0.9-1+b1_amd64.deb ... Unpacking libice-dev:amd64 (2:1.0.9-1+b1) ... Selecting previously unselected package libindirect-perl. Preparing to unpack .../libindirect-perl_0.33-1_amd64.deb ... Unpacking libindirect-perl (0.33-1) ... Selecting previously unselected package libio-sessiondata-perl. Preparing to unpack .../libio-sessiondata-perl_1.03-1_all.deb ... Unpacking libio-sessiondata-perl (1.03-1) ... Selecting previously unselected package libio-stringy-perl. Preparing to unpack .../libio-stringy-perl_2.110-5_all.deb ... Unpacking libio-stringy-perl (2.110-5) ... Selecting previously unselected package libjcode-pm-perl. Preparing to unpack .../libjcode-pm-perl_2.06-1_amd64.deb ... Unpacking libjcode-pm-perl (2.06-1) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.3.1-12_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.3.1-12) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../libjpeg-dev_1%3a1.3.1-12_all.deb ... Unpacking libjpeg-dev (1:1.3.1-12) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../libjs-underscore_1.7.0~dfsg-1_all.deb ... Unpacking libjs-underscore (1.7.0~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../libjs-sphinxdoc_1.2.3+dfsg-1_all.deb ... Unpacking libjs-sphinxdoc (1.2.3+dfsg-1) ... Selecting previously unselected package libjson-xs-perl. Preparing to unpack .../libjson-xs-perl_2.340-1+b2_amd64.deb ... Unpacking libjson-xs-perl (2.340-1+b2) ... Selecting previously unselected package liblapack-dev. Preparing to unpack .../liblapack-dev_3.5.0-4_amd64.deb ... Unpacking liblapack-dev (3.5.0-4) ... Selecting previously unselected package liblog-message-perl. Preparing to unpack .../liblog-message-perl_0.8-1_all.deb ... Unpacking liblog-message-perl (0.8-1) ... Selecting previously unselected package liblog-message-simple-perl. Preparing to unpack .../liblog-message-simple-perl_0.10-2_all.deb ... Unpacking liblog-message-simple-perl (0.10-2) ... Selecting previously unselected package liblog4cpp5. Preparing to unpack .../liblog4cpp5_1.0-4_amd64.deb ... Unpacking liblog4cpp5 (1.0-4) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2+b3_amd64.deb ... Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2+b3) ... Selecting previously unselected package libmagickcore-6.q16-2-extra:amd64. Preparing to unpack .../libmagickcore-6.q16-2-extra_8%3a6.8.9.9-5+deb8u12_amd64.deb ... Unpacking libmagickcore-6.q16-2-extra:amd64 (8:6.8.9.9-5+deb8u12) ... Selecting previously unselected package libsys-hostname-long-perl. Preparing to unpack .../libsys-hostname-long-perl_1.4-3_all.deb ... Unpacking libsys-hostname-long-perl (1.4-3) ... Selecting previously unselected package libmail-sendmail-perl. Preparing to unpack .../libmail-sendmail-perl_0.79.16-1_all.deb ... Unpacking libmail-sendmail-perl (0.79.16-1) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../libnet-smtp-ssl-perl_1.01-3_all.deb ... Unpacking libnet-smtp-ssl-perl (1.01-3) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../libmailtools-perl_2.13-1_all.deb ... Unpacking libmailtools-perl (2.13-1) ... Selecting previously unselected package libmath-derivative-perl. Preparing to unpack .../libmath-derivative-perl_0.01-6_all.deb ... Unpacking libmath-derivative-perl (0.01-6) ... Selecting previously unselected package libmath-spline-perl. Preparing to unpack .../libmath-spline-perl_0.02-1_all.deb ... Unpacking libmath-spline-perl (0.02-1) ... Selecting previously unselected package libmime-tools-perl. Preparing to unpack .../libmime-tools-perl_5.505-1_all.deb ... Unpacking libmime-tools-perl (5.505-1) ... Selecting previously unselected package libmldbm-perl. Preparing to unpack .../libmldbm-perl_2.05-1_all.deb ... Unpacking libmldbm-perl (2.05-1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../libmodule-build-perl_0.421000-2+deb8u1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.421000-2+deb8u1) ... Selecting previously unselected package libmodule-pluggable-perl. Preparing to unpack .../libmodule-pluggable-perl_5.1-1_all.deb ... Unpacking libmodule-pluggable-perl (5.1-1) ... Selecting previously unselected package libmodule-signature-perl. Preparing to unpack .../libmodule-signature-perl_0.73-1+deb8u2_all.deb ... Unpacking libmodule-signature-perl (0.73-1+deb8u2) ... Selecting previously unselected package libmultidimensional-perl. Preparing to unpack .../libmultidimensional-perl_0.010-1+b2_amd64.deb ... Unpacking libmultidimensional-perl (0.010-1+b2) ... Selecting previously unselected package libtinfo-dev:amd64. Preparing to unpack .../libtinfo-dev_5.9+20140913-1+deb8u3_amd64.deb ... Unpacking libtinfo-dev:amd64 (5.9+20140913-1+deb8u3) ... Selecting previously unselected package libncurses5-dev:amd64. Preparing to unpack .../libncurses5-dev_5.9+20140913-1+deb8u3_amd64.deb ... Unpacking libncurses5-dev:amd64 (5.9+20140913-1+deb8u3) ... Selecting previously unselected package libncursesw5-dev:amd64. Preparing to unpack .../libncursesw5-dev_5.9+20140913-1+deb8u3_amd64.deb ... Unpacking libncursesw5-dev:amd64 (5.9+20140913-1+deb8u3) ... Selecting previously unselected package libnet-dbus-perl. Preparing to unpack .../libnet-dbus-perl_1.0.0-2+b2_amd64.deb ... Unpacking libnet-dbus-perl (1.0.0-2+b2) ... Selecting previously unselected package libnetpbm10. Preparing to unpack .../libnetpbm10_2%3a10.0-15.2_amd64.deb ... Unpacking libnetpbm10 (2:10.0-15.2) ... Selecting previously unselected package libole-storage-lite-perl. Preparing to unpack .../libole-storage-lite-perl_0.19-1_all.deb ... Unpacking libole-storage-lite-perl (0.19-1) ... Selecting previously unselected package libsvm3. Preparing to unpack .../libsvm3_3.12-1_amd64.deb ... Unpacking libsvm3 (3.12-1) ... Selecting previously unselected package libxerces-c3.1:amd64. Preparing to unpack .../libxerces-c3.1_3.1.1-5.1+deb8u4_amd64.deb ... Unpacking libxerces-c3.1:amd64 (3.1.1-5.1+deb8u4) ... Selecting previously unselected package openms-common. Preparing to unpack .../openms-common_1.11.1-5_all.deb ... Unpacking openms-common (1.11.1-5) ... Selecting previously unselected package libopenms1.11. Preparing to unpack .../libopenms1.11_1.11.1-5_amd64.deb ... Unpacking libopenms1.11 (1.11.1-5) ... Selecting previously unselected package libossp-uuid-perl. Preparing to unpack .../libossp-uuid-perl_1.6.2-1.5+b1_amd64.deb ... Unpacking libossp-uuid-perl (1.6.2-1.5+b1) ... Selecting previously unselected package libpackage-constants-perl. Preparing to unpack .../libpackage-constants-perl_0.04-1_all.deb ... Unpacking libpackage-constants-perl (0.04-1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../libpaper-utils_1.1.24+nmu4_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4) ... Selecting previously unselected package libpcre3-dev:amd64. Preparing to unpack .../libpcre3-dev_2%3a8.35-3.3+deb8u4_amd64.deb ... Unpacking libpcre3-dev:amd64 (2:8.35-3.3+deb8u4) ... Selecting previously unselected package libperl4-corelibs-perl. Preparing to unpack .../libperl4-corelibs-perl_0.003-1_all.deb ... Unpacking libperl4-corelibs-perl (0.003-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Selecting previously unselected package libpng12-dev:amd64. Preparing to unpack .../libpng12-dev_1.2.50-2+deb8u3_amd64.deb ... Unpacking libpng12-dev:amd64 (1.2.50-2+deb8u3) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../libpod-coverage-perl_0.23-1_all.deb ... Unpacking libpod-coverage-perl (0.23-1) ... Selecting previously unselected package libpod-latex-perl. Preparing to unpack .../libpod-latex-perl_0.61-1_all.deb ... Adding 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Adding 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-1) ... Selecting previously unselected package libpod-readme-perl. Preparing to unpack .../libpod-readme-perl_0.11-1_all.deb ... Unpacking libpod-readme-perl (0.11-1) ... Selecting previously unselected package libpostscript-perl. Preparing to unpack .../libpostscript-perl_0.06-2_all.deb ... Unpacking libpostscript-perl (0.06-2) ... Selecting previously unselected package libpthread-stubs0-dev:amd64. Preparing to unpack .../libpthread-stubs0-dev_0.3-4_amd64.deb ... Unpacking libpthread-stubs0-dev:amd64 (0.3-4) ... Selecting previously unselected package libpython-dev:amd64. Preparing to unpack .../libpython-dev_2.7.9-1_amd64.deb ... Unpacking libpython-dev:amd64 (2.7.9-1) ... Selecting previously unselected package libpython-all-dev:amd64. Preparing to unpack .../libpython-all-dev_2.7.9-1_amd64.deb ... Unpacking libpython-all-dev:amd64 (2.7.9-1) ... Selecting previously unselected package libreadline6-dev:amd64. Preparing to unpack .../libreadline6-dev_6.3-8+b3_amd64.deb ... Unpacking libreadline6-dev:amd64 (6.3-8+b3) ... Selecting previously unselected package libreadline-dev:amd64. Preparing to unpack .../libreadline-dev_6.3-8+b3_amd64.deb ... Unpacking libreadline-dev:amd64 (6.3-8+b3) ... Selecting previously unselected package libsane-extras-common. Preparing to unpack .../libsane-extras-common_1.0.22.3_amd64.deb ... Unpacking libsane-extras-common (1.0.22.3) ... Selecting previously unselected package libsane-extras:amd64. Preparing to unpack .../libsane-extras_1.0.22.3_amd64.deb ... Unpacking libsane-extras:amd64 (1.0.22.3) ... Selecting previously unselected package libsasl2-modules:amd64. Preparing to unpack .../libsasl2-modules_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libsm-dev:amd64. Preparing to unpack .../libsm-dev_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm-dev:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libsnp-sites1. Preparing to unpack .../libsnp-sites1_1.5.0-1_amd64.deb ... Unpacking libsnp-sites1 (1.5.0-1) ... Selecting previously unselected package libtask-weaken-perl. Preparing to unpack .../libtask-weaken-perl_1.04-1_all.deb ... Unpacking libtask-weaken-perl (1.04-1) ... Selecting previously unselected package libsoap-lite-perl. Preparing to unpack .../libsoap-lite-perl_1.11-1_all.deb ... Unpacking libsoap-lite-perl (1.11-1) ... Selecting previously unselected package libtext-template-perl. Preparing to unpack .../libtext-template-perl_1.46-1_all.deb ... Unpacking libtext-template-perl (1.46-1) ... Selecting previously unselected package libsoftware-license-perl. Preparing to unpack .../libsoftware-license-perl_0.103010-3_all.deb ... Unpacking libsoftware-license-perl (0.103010-3) ... Selecting previously unselected package libsort-naturally-perl. Preparing to unpack .../libsort-naturally-perl_1.03-1_all.deb ... Unpacking libsort-naturally-perl (1.03-1) ... Selecting previously unselected package libspreadsheet-writeexcel-perl. Preparing to unpack .../libspreadsheet-writeexcel-perl_2.40-1_all.deb ... Unpacking libspreadsheet-writeexcel-perl (2.40-1) ... Selecting previously unselected package libunicode-map-perl. Preparing to unpack .../libunicode-map-perl_0.112-11+b1_amd64.deb ... Unpacking libunicode-map-perl (0.112-11+b1) ... Selecting previously unselected package libspreadsheet-parseexcel-perl. Preparing to unpack .../libspreadsheet-parseexcel-perl_0.6500-1_all.deb ... Unpacking libspreadsheet-parseexcel-perl (0.6500-1) ... Selecting previously unselected package libsprng2. Preparing to unpack .../libsprng2_2.0a-8_amd64.deb ... Unpacking libsprng2 (2.0a-8) ... Selecting previously unselected package libsquizz. Preparing to unpack .../libsquizz_0.99b+dfsg-3_amd64.deb ... Unpacking libsquizz (0.99b+dfsg-3) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../libsub-name-perl_0.12-1_amd64.deb ... Unpacking libsub-name-perl (0.12-1) ... Selecting previously unselected package libtree-dagnode-perl. Preparing to unpack .../libtree-dagnode-perl_1.22-1_all.deb ... Unpacking libtree-dagnode-perl (1.22-1) ... Selecting previously unselected package libsvg-graph-perl. Preparing to unpack .../libsvg-graph-perl_0.02-2_all.deb ... Unpacking libsvg-graph-perl (0.02-2) ... Selecting previously unselected package libtcmalloc-minimal4. Preparing to unpack .../libtcmalloc-minimal4_2.2.1-0.2_amd64.deb ... Unpacking libtcmalloc-minimal4 (2.2.1-0.2) ... Selecting previously unselected package libterm-ui-perl. Preparing to unpack .../libterm-ui-perl_0.42-1_all.deb ... Unpacking libterm-ui-perl (0.42-1) ... Selecting previously unselected package libtest-pod-perl. Preparing to unpack .../libtest-pod-perl_1.48-1_all.deb ... Unpacking libtest-pod-perl (1.48-1) ... Selecting previously unselected package libtext-soundex-perl. Preparing to unpack .../libtext-soundex-perl_3.4-1+b2_amd64.deb ... Unpacking libtext-soundex-perl (3.4-1+b2) ... Selecting previously unselected package libtie-ixhash-perl. Preparing to unpack .../libtie-ixhash-perl_1.23-1_all.deb ... Unpacking libtie-ixhash-perl (1.23-1) ... Selecting previously unselected package libtype-tiny-xs-perl. Preparing to unpack .../libtype-tiny-xs-perl_0.010-1_amd64.deb ... Unpacking libtype-tiny-xs-perl (0.010-1) ... Selecting previously unselected package libutempter0. Preparing to unpack .../libutempter0_1.1.5-4_amd64.deb ... Unpacking libutempter0 (1.1.5-4) ... Selecting previously unselected package libvisual-0.4-plugins:amd64. Preparing to unpack .../libvisual-0.4-plugins_0.4.0.dfsg.1-7_amd64.deb ... Unpacking libvisual-0.4-plugins:amd64 (0.4.0.dfsg.1-7) ... Selecting previously unselected package libvte-common. Preparing to unpack .../libvte-common_1%3a0.28.2-5_all.deb ... Unpacking libvte-common (1:0.28.2-5) ... Selecting previously unselected package libpango1.0-0:amd64. Preparing to unpack .../libpango1.0-0_1.36.8-3_amd64.deb ... Unpacking libpango1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libvte9. Preparing to unpack .../libvte9_1%3a0.28.2-5_amd64.deb ... Unpacking libvte9 (1:0.28.2-5) ... Selecting previously unselected package libxau-dev:amd64. Preparing to unpack .../libxau-dev_1%3a1.0.8-1_amd64.deb ... Unpacking libxau-dev:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp-dev:amd64. Preparing to unpack .../libxdmcp-dev_1%3a1.1.1-1+b1_amd64.deb ... Unpacking libxdmcp-dev:amd64 (1:1.1.1-1+b1) ... Selecting previously unselected package x11proto-input-dev. Preparing to unpack .../x11proto-input-dev_2.3.1-1_all.deb ... Unpacking x11proto-input-dev (2.3.1-1) ... Selecting previously unselected package x11proto-kb-dev. Preparing to unpack .../x11proto-kb-dev_1.0.6-2_all.deb ... Unpacking x11proto-kb-dev (1.0.6-2) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../xtrans-dev_1.3.4-1_all.deb ... Unpacking xtrans-dev (1.3.4-1) ... Selecting previously unselected package libxcb1-dev:amd64. Preparing to unpack .../libxcb1-dev_1.10-3+b1_amd64.deb ... Unpacking libxcb1-dev:amd64 (1.10-3+b1) ... Selecting previously unselected package libx11-dev:amd64. Preparing to unpack .../libx11-dev_2%3a1.6.2-3+deb8u1_amd64.deb ... Unpacking libx11-dev:amd64 (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libx11-doc. Preparing to unpack .../libx11-doc_2%3a1.6.2-3+deb8u1_all.deb ... Unpacking libx11-doc (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libx11-protocol-perl. Preparing to unpack .../libx11-protocol-perl_0.56-6_all.deb ... Unpacking libx11-protocol-perl (0.56-6) ... Selecting previously unselected package libxml-perl. Preparing to unpack .../libxml-perl_0.08-2_all.deb ... Unpacking libxml-perl (0.08-2) ... Selecting previously unselected package libxml-regexp-perl. Preparing to unpack .../libxml-regexp-perl_0.04-1_all.deb ... Unpacking libxml-regexp-perl (0.04-1) ... Selecting previously unselected package libxml-dom-perl. Preparing to unpack .../libxml-dom-perl_1.44-1_all.deb ... Unpacking libxml-dom-perl (1.44-1) ... Selecting previously unselected package libxml-checker-perl. Preparing to unpack .../libxml-checker-perl_0.13-6_all.deb ... Unpacking libxml-checker-perl (0.13-6) ... Selecting previously unselected package libxml-xpathengine-perl. Preparing to unpack .../libxml-xpathengine-perl_0.13-1_all.deb ... Unpacking libxml-xpathengine-perl (0.13-1) ... Selecting previously unselected package libxml-dom-xpath-perl. Preparing to unpack .../libxml-dom-xpath-perl_0.14-1_all.deb ... Unpacking libxml-dom-xpath-perl (0.14-1) ... Selecting previously unselected package libxml-filter-buffertext-perl. Preparing to unpack .../libxml-filter-buffertext-perl_1.01-5_all.deb ... Unpacking libxml-filter-buffertext-perl (1.01-5) ... Selecting previously unselected package libxml-libxslt-perl. Preparing to unpack .../libxml-libxslt-perl_1.92-1+b1_amd64.deb ... Unpacking libxml-libxslt-perl (1.92-1+b1) ... Selecting previously unselected package libxml-sax-writer-perl. Preparing to unpack .../libxml-sax-writer-perl_0.54-1_all.deb ... Unpacking libxml-sax-writer-perl (0.54-1) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../libxml-writer-perl_0.625-1_all.deb ... Unpacking libxml-writer-perl (0.625-1) ... Selecting previously unselected package libxmlrpc-lite-perl. Preparing to unpack .../libxmlrpc-lite-perl_0.717-1_all.deb ... Unpacking libxmlrpc-lite-perl (0.717-1) ... Selecting previously unselected package libxt-dev:amd64. Preparing to unpack .../libxt-dev_1%3a1.1.4-1+b1_amd64.deb ... Unpacking libxt-dev:amd64 (1:1.1.4-1+b1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../libyaml-libyaml-perl_0.41-6_amd64.deb ... Unpacking libyaml-libyaml-perl (0.41-6) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../libyaml-perl_1.13-1_all.deb ... Unpacking libyaml-perl (1.13-1) ... Selecting previously unselected package libyaml-tiny-perl. Preparing to unpack .../libyaml-tiny-perl_1.64-1_all.deb ... Unpacking libyaml-tiny-perl (1.64-1) ... Selecting previously unselected package libzeep3.0. Preparing to unpack .../libzeep3.0_3.0.2-1+b2_amd64.deb ... Unpacking libzeep3.0 (3.0.2-1+b2) ... Selecting previously unselected package zip. Preparing to unpack .../archives/zip_3.0-8_amd64.deb ... Unpacking zip (3.0-8) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../xdg-utils_1.1.0~rc1+git20111210-7.4+deb8u1_all.deb ... Unpacking xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../r-base-core_3.1.1-1+deb8u1_amd64.deb ... Unpacking r-base-core (3.1.1-1+deb8u1) ... Selecting previously unselected package littler. Preparing to unpack .../littler_0.2.1-1_amd64.deb ... Unpacking littler (0.2.1-1) ... Selecting previously unselected package lksctp-tools. Preparing to unpack .../lksctp-tools_1.0.16+dfsg-2_amd64.deb ... Unpacking lksctp-tools (1.0.16+dfsg-2) ... Selecting previously unselected package lmodern. Preparing to unpack .../lmodern_2.004.4-5_all.deb ... Unpacking lmodern (2.004.4-5) ... Selecting previously unselected package swi-prolog-nox. Preparing to unpack .../swi-prolog-nox_6.6.6-5_amd64.deb ... Unpacking swi-prolog-nox (6.6.6-5) ... Selecting previously unselected package swi-prolog-x. Preparing to unpack .../swi-prolog-x_6.6.6-5_amd64.deb ... Unpacking swi-prolog-x (6.6.6-5) ... Selecting previously unselected package swi-prolog. Preparing to unpack .../swi-prolog_6.6.6-5_amd64.deb ... Unpacking swi-prolog (6.6.6-5) ... Selecting previously unselected package logol-bin. Preparing to unpack .../logol-bin_1.7.0-2_amd64.deb ... Unpacking logol-bin (1.7.0-2) ... Selecting previously unselected package loki. Preparing to unpack .../loki_2.4.7.4-5_amd64.deb ... Unpacking loki (2.4.7.4-5) ... Selecting previously unselected package genometools-common. Preparing to unpack .../genometools-common_1.5.3-2_all.deb ... Unpacking genometools-common (1.5.3-2) ... Selecting previously unselected package libgenometools0. Preparing to unpack .../libgenometools0_1.5.3-2_amd64.deb ... Unpacking libgenometools0 (1.5.3-2) ... Selecting previously unselected package ltrsift. Preparing to unpack .../ltrsift_1.0.2-1_amd64.deb ... Unpacking ltrsift (1.0.2-1) ... Selecting previously unselected package macs. Preparing to unpack .../macs_2.0.9.1-1_amd64.deb ... Unpacking macs (2.0.9.1-1) ... Selecting previously unselected package mafft. Preparing to unpack .../mafft_7.205-1_amd64.deb ... Unpacking mafft (7.205-1) ... Selecting previously unselected package manpages-dev. Preparing to unpack .../manpages-dev_3.74-1_all.deb ... Unpacking manpages-dev (3.74-1) ... Selecting previously unselected package mapsembler2. Preparing to unpack .../mapsembler2_2.1.6+dfsg-1_amd64.deb ... Unpacking mapsembler2 (2.1.6+dfsg-1) ... Selecting previously unselected package maq. Preparing to unpack .../archives/maq_0.7.1-5_amd64.deb ... Unpacking maq (0.7.1-5) ... Selecting previously unselected package maqview. Preparing to unpack .../maqview_0.2.5-6_amd64.deb ... Unpacking maqview (0.2.5-6) ... Selecting previously unselected package massxpert-data. Preparing to unpack .../massxpert-data_3.4.1-1_all.deb ... Unpacking massxpert-data (3.4.1-1) ... Selecting previously unselected package massxpert. Preparing to unpack .../massxpert_3.4.1-1_amd64.deb ... Unpacking massxpert (3.4.1-1) ... Selecting previously unselected package melting. Preparing to unpack .../melting_4.3.1+dfsg-1_amd64.deb ... Unpacking melting (4.3.1+dfsg-1) ... Selecting previously unselected package metastudent. Preparing to unpack .../metastudent_1.0.11-2_all.deb ... Unpacking metastudent (1.0.11-2) ... Selecting previously unselected package nast-ier. Preparing to unpack .../nast-ier_20101212+dfsg-1_amd64.deb ... Unpacking nast-ier (20101212+dfsg-1) ... Selecting previously unselected package wigeon. Preparing to unpack .../wigeon_20101212+dfsg-1_all.deb ... Unpacking wigeon (20101212+dfsg-1) ... Selecting previously unselected package microbiomeutil. Preparing to unpack .../microbiomeutil_20101212+dfsg-1_all.deb ... Unpacking microbiomeutil (20101212+dfsg-1) ... Selecting previously unselected package minia. Preparing to unpack .../minia_1.6088-1_amd64.deb ... Unpacking minia (1.6088-1) ... Selecting previously unselected package mipe. Preparing to unpack .../archives/mipe_1.1-4_all.deb ... Unpacking mipe (1.1-4) ... Selecting previously unselected package mira-assembler. Preparing to unpack .../mira-assembler_4.0.2-1+b1_amd64.deb ... Unpacking mira-assembler (4.0.2-1+b1) ... Selecting previously unselected package mlv-smile. Preparing to unpack .../mlv-smile_1.47-3_amd64.deb ... Unpacking mlv-smile (1.47-3) ... Selecting previously unselected package mothur. Preparing to unpack .../mothur_1.33.3+dfsg-2_amd64.deb ... Unpacking mothur (1.33.3+dfsg-2) ... Selecting previously unselected package mrbayes. Preparing to unpack .../mrbayes_3.2.3+dfsg-1_amd64.deb ... Unpacking mrbayes (3.2.3+dfsg-1) ... Selecting previously unselected package rsync. Preparing to unpack .../rsync_3.1.1-3+deb8u1_amd64.deb ... Unpacking rsync (3.1.1-3+deb8u1) ... Selecting previously unselected package mrs. Preparing to unpack .../mrs_6.0.5+dfsg-1_amd64.deb ... Unpacking mrs (6.0.5+dfsg-1) ... Selecting previously unselected package muscle. Preparing to unpack .../muscle_1%3a3.8.31-1_amd64.deb ... Unpacking muscle (1:3.8.31-1) ... Selecting previously unselected package mustang. Preparing to unpack .../mustang_3.2.2-1_amd64.deb ... Unpacking mustang (3.2.2-1) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../ncbi-blast+_2.2.29-3_amd64.deb ... Unpacking ncbi-blast+ (2.2.29-3) ... Selecting previously unselected package ncbi-epcr. Preparing to unpack .../ncbi-epcr_2.3.12-1-2_amd64.deb ... Unpacking ncbi-epcr (2.3.12-1-2) ... Selecting previously unselected package ncbi-tools-bin. Preparing to unpack .../ncbi-tools-bin_6.1.20120620-8_amd64.deb ... Unpacking ncbi-tools-bin (6.1.20120620-8) ... Selecting previously unselected package ncbi-tools-x11. Preparing to unpack .../ncbi-tools-x11_6.1.20120620-8_amd64.deb ... Unpacking ncbi-tools-x11 (6.1.20120620-8) ... Selecting previously unselected package ncoils. Preparing to unpack .../ncoils_2002-4_amd64.deb ... Unpacking ncoils (2002-4) ... Selecting previously unselected package netpbm. Preparing to unpack .../netpbm_2%3a10.0-15.2_amd64.deb ... Unpacking netpbm (2:10.0-15.2) ... Selecting previously unselected package njplot. Preparing to unpack .../njplot_2.4-2+b1_amd64.deb ... Unpacking njplot (2.4-2+b1) ... Selecting previously unselected package notification-daemon. Preparing to unpack .../notification-daemon_0.7.6-2_amd64.deb ... Unpacking notification-daemon (0.7.6-2) ... Selecting previously unselected package topp. Preparing to unpack .../topp_1.11.1-5_amd64.deb ... Unpacking topp (1.11.1-5) ... Selecting previously unselected package openms. Preparing to unpack .../openms_1.11.1-5_all.deb ... Unpacking openms (1.11.1-5) ... Selecting previously unselected package paraclu. Preparing to unpack .../archives/paraclu_9-1_amd64.deb ... Unpacking paraclu (9-1) ... Selecting previously unselected package parsinsert. Preparing to unpack .../parsinsert_1.04-1_amd64.deb ... Unpacking parsinsert (1.04-1) ... Selecting previously unselected package pdb2pqr. Preparing to unpack .../pdb2pqr_1.9.0+dfsg-1_amd64.deb ... Unpacking pdb2pqr (1.9.0+dfsg-1) ... Selecting previously unselected package perl-doc. Preparing to unpack .../perl-doc_5.20.2-3+deb8u11_all.deb ... Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.20.2-3+deb8u11) ... Selecting previously unselected package perl-tk. Preparing to unpack .../perl-tk_1%3a804.032-3+b3_amd64.deb ... Unpacking perl-tk (1:804.032-3+b3) ... Selecting previously unselected package perlprimer. Preparing to unpack .../perlprimer_1.1.21-2_all.deb ... Unpacking perlprimer (1.1.21-2) ... Selecting previously unselected package perm. Preparing to unpack .../perm_0.4.0-1_amd64.deb ... Unpacking perm (0.4.0-1) ... Selecting previously unselected package phylip. Preparing to unpack .../phylip_1%3a3.696+dfsg-1_amd64.deb ... Unpacking phylip (1:3.696+dfsg-1) ... Selecting previously unselected package phyml. Preparing to unpack .../phyml_2%3a20120412-2_amd64.deb ... Unpacking phyml (2:20120412-2) ... Selecting previously unselected package phyutility. Preparing to unpack .../phyutility_2.7.3-1_amd64.deb ... Unpacking phyutility (2.7.3-1) ... Selecting previously unselected package picard-tools. Preparing to unpack .../picard-tools_1.113-1_all.deb ... Unpacking picard-tools (1.113-1) ... Selecting previously unselected package python-tk. Preparing to unpack .../python-tk_2.7.8-2+b1_amd64.deb ... Unpacking python-tk (2.7.8-2+b1) ... Selecting previously unselected package plasmidomics. Preparing to unpack .../plasmidomics_0.2.0-3_all.deb ... Unpacking plasmidomics (0.2.0-3) ... Selecting previously unselected package plink. Preparing to unpack .../plink_1.07-3_amd64.deb ... Unpacking plink (1.07-3) ... Selecting previously unselected package poa. Preparing to unpack .../poa_2.0+20060928-3_amd64.deb ... Unpacking poa (2.0+20060928-3) ... Selecting previously unselected package prank. Preparing to unpack .../prank_0.0.140110-1_amd64.deb ... Unpacking prank (0.0.140110-1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../texlive-base_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-base (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../texlive-latex-base_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-latex-base (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../texlive-latex-recommended_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-latex-recommended (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../texlive-pictures_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-pictures (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-generic-recommended. Preparing to unpack .../texlive-generic-recommended_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-generic-recommended (2014.20141024-2+deb8u1) ... Selecting previously unselected package prerex. Preparing to unpack .../prerex_6.5.3-1_amd64.deb ... Unpacking prerex (6.5.3-1) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../preview-latex-style_11.87-3+deb8u1_all.deb ... Unpacking preview-latex-style (11.87-3+deb8u1) ... Selecting previously unselected package prime-phylo. Preparing to unpack .../prime-phylo_1.0.11-2_amd64.deb ... Unpacking prime-phylo (1.0.11-2) ... Selecting previously unselected package primer3. Preparing to unpack .../primer3_2.3.6-1_amd64.deb ... Unpacking primer3 (2.3.6-1) ... Selecting previously unselected package proalign. Preparing to unpack .../proalign_0.603-1_amd64.deb ... Unpacking proalign (0.603-1) ... Selecting previously unselected package probabel. Preparing to unpack .../probabel_0.4.3-2_amd64.deb ... Unpacking probabel (0.4.3-2) ... Selecting previously unselected package probalign. Preparing to unpack .../probalign_1.4-3_amd64.deb ... Unpacking probalign (1.4-3) ... Selecting previously unselected package probcons. Preparing to unpack .../probcons_1.12-9_amd64.deb ... Unpacking probcons (1.12-9) ... Selecting previously unselected package proda. Preparing to unpack .../archives/proda_1.0-8_amd64.deb ... Unpacking proda (1.0-8) ... Selecting previously unselected package prodigal. Preparing to unpack .../prodigal_1%3a2.6.1-1_amd64.deb ... Unpacking prodigal (1:2.6.1-1) ... Selecting previously unselected package texlive-pstricks. Preparing to unpack .../texlive-pstricks_2014.20141024-1_all.deb ... Unpacking texlive-pstricks (2014.20141024-1) ... Selecting previously unselected package prosper. Preparing to unpack .../prosper_1.00.4+cvs.2007.05.01-4_all.deb ... Unpacking prosper (1.00.4+cvs.2007.05.01-4) ... Selecting previously unselected package ps2eps. Preparing to unpack .../ps2eps_1.68+binaryfree-1_amd64.deb ... Unpacking ps2eps (1.68+binaryfree-1) ... Selecting previously unselected package python-wxversion. Preparing to unpack .../python-wxversion_3.0.1.1+dfsg-2_all.deb ... Unpacking python-wxversion (3.0.1.1+dfsg-2) ... Selecting previously unselected package python-wxgtk3.0. Preparing to unpack .../python-wxgtk3.0_3.0.1.1+dfsg-2_amd64.deb ... Unpacking python-wxgtk3.0 (3.0.1.1+dfsg-2) ... Selecting previously unselected package python-yaml. Preparing to unpack .../python-yaml_3.11-2_amd64.deb ... Unpacking python-yaml (3.11-2) ... Selecting previously unselected package pycorrfit. Preparing to unpack .../pycorrfit_0.8.3-2_all.deb ... Unpacking pycorrfit (0.8.3-2) ... Selecting previously unselected package python-pmw. Preparing to unpack .../python-pmw_1.3.2-6_all.deb ... Unpacking python-pmw (1.3.2-6) ... Selecting previously unselected package pymol. Preparing to unpack .../pymol_1.7.2.1-1_amd64.deb ... Unpacking pymol (1.7.2.1-1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../sphinx-common_1.2.3+dfsg-1_all.deb ... Unpacking sphinx-common (1.2.3+dfsg-1) ... Selecting previously unselected package pyqi. Preparing to unpack .../pyqi_0.3.2+dfsg-1_all.deb ... Unpacking pyqi (0.3.2+dfsg-1) ... Selecting previously unselected package python-pyfits. Preparing to unpack .../python-pyfits_1%3a3.3-2+b1_amd64.deb ... Unpacking python-pyfits (1:3.3-2+b1) ... Selecting previously unselected package python-multipletau. Preparing to unpack .../python-multipletau_0.1.4-1_all.deb ... Unpacking python-multipletau (0.1.4-1) ... Selecting previously unselected package pyscanfcs. Preparing to unpack .../pyscanfcs_0.2.2-2_amd64.deb ... Unpacking pyscanfcs (0.2.2-2) ... Selecting previously unselected package python-all. Preparing to unpack .../python-all_2.7.9-1_amd64.deb ... Unpacking python-all (2.7.9-1) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../python2.7-dev_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7-dev (2.7.9-2+deb8u1) ... Selecting previously unselected package python-dev. Preparing to unpack .../python-dev_2.7.9-1_amd64.deb ... Unpacking python-dev (2.7.9-1) ... Selecting previously unselected package python-all-dev. Preparing to unpack .../python-all-dev_2.7.9-1_amd64.deb ... Unpacking python-all-dev (2.7.9-1) ... Selecting previously unselected package python-cogent. Preparing to unpack .../python-cogent_1.5.3-2_amd64.deb ... Unpacking python-cogent (1.5.3-2) ... Selecting previously unselected package python-h5py. Preparing to unpack .../python-h5py_2.2.1-1.1+b1_amd64.deb ... Unpacking python-h5py (2.2.1-1.1+b1) ... Selecting previously unselected package python-biom-format. Preparing to unpack .../python-biom-format_2.1+dfsg-1_amd64.deb ... Unpacking python-biom-format (2.1+dfsg-1) ... Selecting previously unselected package python-biopython-doc. Preparing to unpack .../python-biopython-doc_1.64+dfsg-5_all.deb ... Unpacking python-biopython-doc (1.64+dfsg-5) ... Selecting previously unselected package python-cairo. Preparing to unpack .../python-cairo_1.8.8-1+b2_amd64.deb ... Unpacking python-cairo (1.8.8-1+b2) ... Selecting previously unselected package python-chardet. Preparing to unpack .../python-chardet_2.3.0-1_all.deb ... Unpacking python-chardet (2.3.0-1) ... Selecting previously unselected package python-crypto. Preparing to unpack .../python-crypto_2.6.1-5+deb8u1_amd64.deb ... Unpacking python-crypto (2.6.1-5+deb8u1) ... Selecting previously unselected package python-roman. Preparing to unpack .../python-roman_2.0.0-1_all.deb ... Unpacking python-roman (2.0.0-1) ... Selecting previously unselected package python-docutils. Preparing to unpack .../python-docutils_0.12+dfsg-1_all.deb ... Unpacking python-docutils (0.12+dfsg-1) ... Selecting previously unselected package python-egenix-mxtools. Preparing to unpack .../python-egenix-mxtools_3.2.8-1_amd64.deb ... Unpacking python-egenix-mxtools (3.2.8-1) ... Selecting previously unselected package python-egenix-mxdatetime. Preparing to unpack .../python-egenix-mxdatetime_3.2.8-1_amd64.deb ... Unpacking python-egenix-mxdatetime (3.2.8-1) ... Selecting previously unselected package python-gobject-2. Preparing to unpack .../python-gobject-2_2.28.6-12+b1_amd64.deb ... Unpacking python-gobject-2 (2.28.6-12+b1) ... Selecting previously unselected package python-gtk2. Preparing to unpack .../python-gtk2_2.24.0-4_amd64.deb ... Unpacking python-gtk2 (2.24.0-4) ... Selecting previously unselected package python-glade2. Preparing to unpack .../python-glade2_2.24.0-4_amd64.deb ... Unpacking python-glade2 (2.24.0-4) ... Selecting previously unselected package python-gmpy. Preparing to unpack .../python-gmpy_1.15-1_amd64.deb ... Unpacking python-gmpy (1.15-1) ... Selecting previously unselected package python-pil:amd64. Preparing to unpack .../python-pil_2.6.1-2+deb8u3_amd64.deb ... Unpacking python-pil:amd64 (2.6.1-2+deb8u3) ... Selecting previously unselected package python-imaging. Preparing to unpack .../python-imaging_2.6.1-2+deb8u3_all.deb ... Unpacking python-imaging (2.6.1-2+deb8u3) ... Selecting previously unselected package python-markupsafe. Preparing to unpack .../python-markupsafe_0.23-1+b1_amd64.deb ... Unpacking python-markupsafe (0.23-1+b1) ... Selecting previously unselected package python-jinja2. Preparing to unpack .../python-jinja2_2.7.3-1_all.deb ... Unpacking python-jinja2 (2.7.3-1) ... Selecting previously unselected package python-lxml. Preparing to unpack .../python-lxml_3.4.0-1_amd64.deb ... Unpacking python-lxml (3.4.0-1) ... Selecting previously unselected package python-mako. Preparing to unpack .../python-mako_1.0.0+dfsg-0.1_all.deb ... Unpacking python-mako (1.0.0+dfsg-0.1) ... Selecting previously unselected package python-mpmath. Preparing to unpack .../python-mpmath_0.19-1_all.deb ... Unpacking python-mpmath (0.19-1) ... Selecting previously unselected package python-mysqldb. Preparing to unpack .../python-mysqldb_1.2.3-2.1_amd64.deb ... Unpacking python-mysqldb (1.2.3-2.1) ... Selecting previously unselected package python-pyglet. Preparing to unpack .../python-pyglet_1.1.4.dfsg-2_all.deb ... Unpacking python-pyglet (1.1.4.dfsg-2) ... Selecting previously unselected package python-pygments. Preparing to unpack .../python-pygments_2.0.1+dfsg-1.1+deb8u1_all.deb ... Unpacking python-pygments (2.0.1+dfsg-1.1+deb8u1) ... Selecting previously unselected package python-pysqlite2. Preparing to unpack .../python-pysqlite2_2.6.3-3_amd64.deb ... Unpacking python-pysqlite2 (2.6.3-3) ... Selecting previously unselected package python-qcli. Preparing to unpack .../python-qcli_0.1.0-1_amd64.deb ... Unpacking python-qcli (0.1.0-1) ... Selecting previously unselected package python-renderpm:amd64. Preparing to unpack .../python-renderpm_3.1.8-3+deb8u1_amd64.deb ... Unpacking python-renderpm:amd64 (3.1.8-3+deb8u1) ... Selecting previously unselected package python-sphinx. Preparing to unpack .../python-sphinx_1.2.3+dfsg-1_all.deb ... Unpacking python-sphinx (1.2.3+dfsg-1) ... Selecting previously unselected package python-sqlalchemy. Preparing to unpack .../python-sqlalchemy_0.9.8+dfsg-0.1_all.deb ... Unpacking python-sqlalchemy (0.9.8+dfsg-0.1) ... Selecting previously unselected package python-sqlalchemy-ext. Preparing to unpack .../python-sqlalchemy-ext_0.9.8+dfsg-0.1_amd64.deb ... Unpacking python-sqlalchemy-ext (0.9.8+dfsg-0.1) ... Selecting previously unselected package python-sympy. Preparing to unpack .../python-sympy_0.7.5-3_all.deb ... Unpacking python-sympy (0.7.5-3) ... Selecting previously unselected package qiime-data. Preparing to unpack .../qiime-data_1.8.0+dfsg-4_all.deb ... Unpacking qiime-data (1.8.0+dfsg-4) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../r-base-dev_3.1.1-1+deb8u1_all.deb ... Unpacking r-base-dev (3.1.1-1+deb8u1) ... Selecting previously unselected package r-cran-dbi. Preparing to unpack .../r-cran-dbi_0.3.1-1_amd64.deb ... Unpacking r-cran-dbi (0.3.1-1) ... Selecting previously unselected package r-cran-rsqlite. Preparing to unpack .../r-cran-rsqlite_0.11.4-3_amd64.deb ... Unpacking r-cran-rsqlite (0.11.4-3) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../r-bioc-biocgenerics_0.10.0-1_all.deb ... Unpacking r-bioc-biocgenerics (0.10.0-1) ... Selecting previously unselected package r-bioc-biobase. Preparing to unpack .../r-bioc-biobase_2.24.0-1_amd64.deb ... Unpacking r-bioc-biobase (2.24.0-1) ... Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../r-bioc-iranges_1.22.10-1_amd64.deb ... Unpacking r-bioc-iranges (1.22.10-1) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../r-bioc-genomeinfodb_1.0.2-2_all.deb ... Unpacking r-bioc-genomeinfodb (1.0.2-2) ... Selecting previously unselected package r-bioc-annotationdbi. Preparing to unpack .../r-bioc-annotationdbi_1.26.1-1_all.deb ... Unpacking r-bioc-annotationdbi (1.26.1-1) ... Selecting previously unselected package r-cran-codetools. Preparing to unpack .../r-cran-codetools_0.2-9-1_all.deb ... Unpacking r-cran-codetools (0.2-9-1) ... Selecting previously unselected package r-cran-iterators. Preparing to unpack .../r-cran-iterators_1.0.7-1_all.deb ... Unpacking r-cran-iterators (1.0.7-1) ... Selecting previously unselected package r-cran-foreach. Preparing to unpack .../r-cran-foreach_1.4.2-1_all.deb ... Unpacking r-cran-foreach (1.4.2-1) ... Selecting previously unselected package r-cran-checkmate. Preparing to unpack .../r-cran-checkmate_1.5.0-1_amd64.deb ... Unpacking r-cran-checkmate (1.5.0-1) ... Selecting previously unselected package r-cran-bbmisc. Preparing to unpack .../r-cran-bbmisc_1.7-1_amd64.deb ... Unpacking r-cran-bbmisc (1.7-1) ... Selecting previously unselected package r-cran-brew. Preparing to unpack .../r-cran-brew_1.0-6-1_amd64.deb ... Unpacking r-cran-brew (1.0-6-1) ... Selecting previously unselected package r-cran-digest. Preparing to unpack .../r-cran-digest_0.6.4-1_amd64.deb ... Unpacking r-cran-digest (0.6.4-1) ... Selecting previously unselected package r-cran-pkgkitten. Preparing to unpack .../r-cran-pkgkitten_0.1.2-1_all.deb ... Unpacking r-cran-pkgkitten (0.1.2-1) ... Selecting previously unselected package r-cran-rcpp. Preparing to unpack .../r-cran-rcpp_0.11.3-1_amd64.deb ... Unpacking r-cran-rcpp (0.11.3-1) ... Selecting previously unselected package r-cran-plyr. Preparing to unpack .../r-cran-plyr_1.8.1-2_amd64.deb ... Unpacking r-cran-plyr (1.8.1-2) ... Selecting previously unselected package r-cran-stringr. Preparing to unpack .../r-cran-stringr_0.6.2-2_all.deb ... Unpacking r-cran-stringr (0.6.2-2) ... Selecting previously unselected package r-cran-base64enc. Preparing to unpack .../r-cran-base64enc_0.1-2-1_amd64.deb ... Unpacking r-cran-base64enc (0.1-2-1) ... Selecting previously unselected package r-cran-sendmailr. Preparing to unpack .../r-cran-sendmailr_1.2-1-1_amd64.deb ... Unpacking r-cran-sendmailr (1.2-1-1) ... Selecting previously unselected package r-cran-fail. Preparing to unpack .../r-cran-fail_1.2-1_amd64.deb ... Unpacking r-cran-fail (1.2-1) ... Selecting previously unselected package r-cran-batchjobs. Preparing to unpack .../r-cran-batchjobs_1.4-1_amd64.deb ... Unpacking r-cran-batchjobs (1.4-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../r-bioc-biocparallel_0.6.1-1_all.deb ... Unpacking r-bioc-biocparallel (0.6.1-1) ... Selecting previously unselected package r-cran-xml. Preparing to unpack .../r-cran-xml_3.98-1.1-1_amd64.deb ... Unpacking r-cran-xml (3.98-1.1-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../r-cran-bitops_1.0-6-1_amd64.deb ... Unpacking r-cran-bitops (1.0-6-1) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../r-cran-rcurl_1.95-4.3-1+deb8u1_amd64.deb ... Unpacking r-cran-rcurl (1.95-4.3-1+deb8u1) ... Selecting previously unselected package r-bioc-biomart. Preparing to unpack .../r-bioc-biomart_2.20.0-1_all.deb ... Unpacking r-bioc-biomart (2.20.0-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../r-bioc-xvector_0.4.0-1_amd64.deb ... Unpacking r-bioc-xvector (0.4.0-1) ... Selecting previously unselected package r-bioc-biostrings. Preparing to unpack .../r-bioc-biostrings_2.32.1-1_amd64.deb ... Unpacking r-bioc-biostrings (2.32.1-1) ... Selecting previously unselected package r-cran-dichromat. Preparing to unpack .../r-cran-dichromat_2.0.0-3_all.deb ... Unpacking r-cran-dichromat (2.0.0-3) ... Selecting previously unselected package r-cran-foreign. Preparing to unpack .../r-cran-foreign_0.8.61-1_amd64.deb ... Unpacking r-cran-foreign (0.8.61-1) ... Selecting previously unselected package r-cran-chron. Preparing to unpack .../r-cran-chron_2.3-45-1_amd64.deb ... Unpacking r-cran-chron (2.3-45-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../r-cran-lattice_0.20-29-1_amd64.deb ... Unpacking r-cran-lattice (0.20-29-1) ... Selecting previously unselected package r-cran-cluster. Preparing to unpack .../r-cran-cluster_1.15.3-1_amd64.deb ... Unpacking r-cran-cluster (1.15.3-1) ... Selecting previously unselected package r-cran-survival. Preparing to unpack .../r-cran-survival_2.37-7-1_amd64.deb ... Unpacking r-cran-survival (2.37-7-1) ... Selecting previously unselected package r-cran-formula. Preparing to unpack .../r-cran-formula_1.1-2-1_all.deb ... Unpacking r-cran-formula (1.1-2-1) ... Selecting previously unselected package r-cran-rpart. Preparing to unpack .../r-cran-rpart_4.1-8-1_amd64.deb ... Unpacking r-cran-rpart (4.1-8-1) ... Selecting previously unselected package r-cran-rcolorbrewer. Preparing to unpack .../r-cran-rcolorbrewer_1.0-5-2_all.deb ... Unpacking r-cran-rcolorbrewer (1.0-5-2) ... Selecting previously unselected package r-cran-latticeextra. Preparing to unpack .../r-cran-latticeextra_0.6-26-1_amd64.deb ... Unpacking r-cran-latticeextra (0.6-26-1) ... Selecting previously unselected package r-cran-hmisc. Preparing to unpack .../r-cran-hmisc_3.14-5-1_amd64.deb ... Unpacking r-cran-hmisc (3.14-5-1) ... Selecting previously unselected package r-cran-nnet. Preparing to unpack .../r-cran-nnet_7.3-8-1_amd64.deb ... Unpacking r-cran-nnet (7.3-8-1) ... Selecting previously unselected package r-cran-colorspace. Preparing to unpack .../r-cran-colorspace_1.2-4-1_amd64.deb ... Unpacking r-cran-colorspace (1.2-4-1) ... Selecting previously unselected package r-cran-munsell. Preparing to unpack .../r-cran-munsell_0.4.2-1_all.deb ... Unpacking r-cran-munsell (0.4.2-1) ... Selecting previously unselected package r-cran-labeling. Preparing to unpack .../r-cran-labeling_0.3-1_all.deb ... Unpacking r-cran-labeling (0.3-1) ... Selecting previously unselected package r-cran-scales. Preparing to unpack .../r-cran-scales_0.2.4-1_all.deb ... Unpacking r-cran-scales (0.2.4-1) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../r-bioc-genomicranges_1.16.4-2_amd64.deb ... Unpacking r-bioc-genomicranges (1.16.4-2) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../r-bioc-rsamtools_1.16.1-2_amd64.deb ... Unpacking r-bioc-rsamtools (1.16.1-2) ... Selecting previously unselected package r-bioc-bsgenome. Preparing to unpack .../r-bioc-bsgenome_1.32.0-1_all.deb ... Unpacking r-bioc-bsgenome (1.32.0-1) ... Selecting previously unselected package r-bioc-genomicalignments. Preparing to unpack .../r-bioc-genomicalignments_1.0.6-1_amd64.deb ... Unpacking r-bioc-genomicalignments (1.0.6-1) ... Selecting previously unselected package r-bioc-rtracklayer. Preparing to unpack .../r-bioc-rtracklayer_1.24.2-1_amd64.deb ... Unpacking r-bioc-rtracklayer (1.24.2-1) ... Selecting previously unselected package r-bioc-genomicfeatures. Preparing to unpack .../r-bioc-genomicfeatures_1.16.3-1_all.deb ... Unpacking r-bioc-genomicfeatures (1.16.3-1) ... Selecting previously unselected package r-bioc-variantannotation. Preparing to unpack .../r-bioc-variantannotation_1.10.5-1_amd64.deb ... Unpacking r-bioc-variantannotation (1.10.5-1) ... Selecting previously unselected package r-bioc-biovizbase. Preparing to unpack .../r-bioc-biovizbase_1.12.3-1_amd64.deb ... Unpacking r-bioc-biovizbase (1.12.3-1) ... Selecting previously unselected package r-cran-reshape2. Preparing to unpack .../r-cran-reshape2_1.4-1_amd64.deb ... Unpacking r-cran-reshape2 (1.4-1) ... Selecting previously unselected package r-cran-gtable. Preparing to unpack .../r-cran-gtable_0.1.2-1.1_all.deb ... Unpacking r-cran-gtable (0.1.2-1.1) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../r-cran-mass_7.3-34-1_amd64.deb ... Unpacking r-cran-mass (7.3-34-1) ... Selecting previously unselected package r-cran-proto. Preparing to unpack .../r-cran-proto_0.3-10-1_amd64.deb ... Unpacking r-cran-proto (0.3-10-1) ... Selecting previously unselected package r-cran-ggplot2. Preparing to unpack .../r-cran-ggplot2_1.0.0-1_all.deb ... Unpacking r-cran-ggplot2 (1.0.0-1) ... Selecting previously unselected package r-cran-fastcluster. Preparing to unpack .../r-cran-fastcluster_1.1.13-1_amd64.deb ... Unpacking r-cran-fastcluster (1.1.13-1) ... Selecting previously unselected package r-cran-r.methodss3. Preparing to unpack .../r-cran-r.methodss3_1.6.1-1_amd64.deb ... Unpacking r-cran-r.methodss3 (1.6.1-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../r-cran-matrixstats_0.10.3-1_amd64.deb ... Unpacking r-cran-matrixstats (0.10.3-1) ... Selecting previously unselected package r-bioc-gviz. Preparing to unpack .../r-bioc-gviz_1.8.4-1_all.deb ... Unpacking r-bioc-gviz (1.8.4-1) ... Selecting previously unselected package r-bioc-cummerbund. Preparing to unpack .../r-bioc-cummerbund_2.6.1-1_all.deb ... Unpacking r-bioc-cummerbund (2.6.1-1) ... Selecting previously unselected package r-bioc-hilbertvis. Preparing to unpack .../r-bioc-hilbertvis_1.24.0-1_amd64.deb ... Unpacking r-bioc-hilbertvis (1.24.0-1) ... Selecting previously unselected package r-cran-hwriter. Preparing to unpack .../r-cran-hwriter_1.3.2-1_all.deb ... Unpacking r-cran-hwriter (1.3.2-1) ... Selecting previously unselected package r-bioc-shortread. Preparing to unpack .../r-bioc-shortread_1.22.0-1_amd64.deb ... Unpacking r-bioc-shortread (1.22.0-1) ... Selecting previously unselected package r-cran-abind. Preparing to unpack .../r-cran-abind_1.4-0-2_all.deb ... Unpacking r-cran-abind (1.4-0-2) ... Selecting previously unselected package r-cran-nlme. Preparing to unpack .../r-cran-nlme_3.1.117-1_amd64.deb ... Unpacking r-cran-nlme (3.1.117-1) ... Selecting previously unselected package r-cran-ape. Preparing to unpack .../r-cran-ape_3.1-4-1_amd64.deb ... Unpacking r-cran-ape (3.1-4-1) ... Selecting previously unselected package r-cran-boot. Preparing to unpack .../r-cran-boot_1.3-13-1_all.deb ... Unpacking r-cran-boot (1.3-13-1) ... Selecting previously unselected package r-cran-class. Preparing to unpack .../r-cran-class_7.3-11-1_amd64.deb ... Unpacking r-cran-class (7.3-11-1) ... Selecting previously unselected package r-cran-multicore. Preparing to unpack .../r-cran-multicore_0.2-1_amd64.deb ... Unpacking r-cran-multicore (0.2-1) ... Selecting previously unselected package r-cran-domc. Preparing to unpack .../r-cran-domc_1.3.3-1_all.deb ... Unpacking r-cran-domc (1.3.3-1) ... Selecting previously unselected package r-cran-doparallel. Preparing to unpack .../r-cran-doparallel_1.0.8-1_amd64.deb ... Unpacking r-cran-doparallel (1.0.8-1) ... Selecting previously unselected package r-cran-evaluate. Preparing to unpack .../r-cran-evaluate_0.5.5-1_all.deb ... Unpacking r-cran-evaluate (0.5.5-1) ... Selecting previously unselected package r-cran-g.data. Preparing to unpack .../r-cran-g.data_2.4-1_all.deb ... Unpacking r-cran-g.data (2.4-1) ... Selecting previously unselected package r-cran-genabel.data. Preparing to unpack .../r-cran-genabel.data_1.0.0-1_amd64.deb ... Unpacking r-cran-genabel.data (1.0.0-1) ... Selecting previously unselected package r-cran-genabel. Preparing to unpack .../r-cran-genabel_1.8-0-1_amd64.deb ... Unpacking r-cran-genabel (1.8-0-1) ... Selecting previously unselected package r-cran-getopt. Preparing to unpack .../r-cran-getopt_1.20.0-1_amd64.deb ... Unpacking r-cran-getopt (1.20.0-1) ... Selecting previously unselected package r-cran-kernsmooth. Preparing to unpack .../r-cran-kernsmooth_2.23-13-1_amd64.deb ... Unpacking r-cran-kernsmooth (2.23-13-1) ... Selecting previously unselected package r-cran-maps. Preparing to unpack .../r-cran-maps_2.3-7-1_amd64.deb ... Unpacking r-cran-maps (2.3-7-1) ... Selecting previously unselected package r-cran-mapproj. Preparing to unpack .../r-cran-mapproj_1.2-2-1_amd64.deb ... Unpacking r-cran-mapproj (1.2-2-1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../r-cran-matrix_1.1-4-1_amd64.deb ... Unpacking r-cran-matrix (1.1-4-1) ... Selecting previously unselected package r-cran-mgcv. Preparing to unpack .../r-cran-mgcv_1.8-3-1_amd64.deb ... Unpacking r-cran-mgcv (1.8-3-1) ... Selecting previously unselected package r-cran-optparse. Preparing to unpack .../r-cran-optparse_1.2.0-1_all.deb ... Unpacking r-cran-optparse (1.2.0-1) ... Selecting previously unselected package r-cran-permute. Preparing to unpack .../r-cran-permute_0.8-3-1_all.deb ... Unpacking r-cran-permute (0.8-3-1) ... Selecting previously unselected package r-cran-qtl. Preparing to unpack .../r-cran-qtl_1.33-7-1_amd64.deb ... Unpacking r-cran-qtl (1.33-7-1) ... Selecting previously unselected package r-cran-sp. Preparing to unpack .../r-cran-sp_1%3a1.0-15-1_amd64.deb ... Unpacking r-cran-sp (1:1.0-15-1) ... Selecting previously unselected package r-cran-spatial. Preparing to unpack .../r-cran-spatial_7.3-8-1_amd64.deb ... Unpacking r-cran-spatial (7.3-8-1) ... Selecting previously unselected package tk8.6. Preparing to unpack .../tk8.6_8.6.2-1_amd64.deb ... Unpacking tk8.6 (8.6.2-1) ... Selecting previously unselected package tcl8.6. Preparing to unpack .../tcl8.6_8.6.2+dfsg-2_amd64.deb ... Unpacking tcl8.6 (8.6.2+dfsg-2) ... Selecting previously unselected package tcl. Preparing to unpack .../archives/tcl_8.6.0+8_amd64.deb ... Unpacking tcl (8.6.0+8) ... Selecting previously unselected package tk. Preparing to unpack .../archives/tk_8.6.0+8_amd64.deb ... Unpacking tk (8.6.0+8) ... Selecting previously unselected package tk-table. Preparing to unpack .../tk-table_2.10-2_amd64.deb ... Unpacking tk-table (2.10-2) ... Selecting previously unselected package r-cran-tcltk2. Preparing to unpack .../r-cran-tcltk2_1.2-10-1_all.deb ... Unpacking r-cran-tcltk2 (1.2-10-1) ... Selecting previously unselected package r-cran-testthat. Preparing to unpack .../r-cran-testthat_0.9.1-1_amd64.deb ... Unpacking r-cran-testthat (0.9.1-1) ... Selecting previously unselected package r-cran-vegan. Preparing to unpack .../r-cran-vegan_2.0-10-1_amd64.deb ... Unpacking r-cran-vegan (2.0-10-1) ... Selecting previously unselected package r-doc-html. Preparing to unpack .../r-doc-html_3.1.1-1+deb8u1_all.deb ... Unpacking r-doc-html (3.1.1-1+deb8u1) ... Selecting previously unselected package r-other-bio3d. Preparing to unpack .../r-other-bio3d_1.1-5-1_all.deb ... Unpacking r-other-bio3d (1.1-5-1) ... Selecting previously unselected package r-other-mott-happy.hbrem. Preparing to unpack .../r-other-mott-happy.hbrem_2.4-1_amd64.deb ... Unpacking r-other-mott-happy.hbrem (2.4-1) ... Selecting previously unselected package r-recommended. Preparing to unpack .../r-recommended_3.1.1-1+deb8u1_all.deb ... Unpacking r-recommended (3.1.1-1+deb8u1) ... Selecting previously unselected package rasmol. Preparing to unpack .../rasmol_2.7.5.2-2_amd64.deb ... Unpacking rasmol (2.7.5.2-2) ... Selecting previously unselected package raster3d. Preparing to unpack .../raster3d_3.0-3-1_amd64.deb ... Unpacking raster3d (3.0-3-1) ... Selecting previously unselected package raxml. Preparing to unpack .../raxml_8.1.1-3_amd64.deb ... Unpacking raxml (8.1.1-3) ... Selecting previously unselected package readseq. Preparing to unpack .../readseq_1-11_amd64.deb ... Unpacking readseq (1-11) ... Selecting previously unselected package relion-bin. Preparing to unpack .../relion-bin_1.3+dfsg-2_amd64.deb ... Unpacking relion-bin (1.3+dfsg-2) ... Selecting previously unselected package rename. Preparing to unpack .../archives/rename_0.20-3_all.deb ... Unpacking rename (0.20-3) ... Selecting previously unselected package rnahybrid. Preparing to unpack .../rnahybrid_2.1.1-2_amd64.deb ... Unpacking rnahybrid (2.1.1-2) ... Selecting previously unselected package rtax. Preparing to unpack .../archives/rtax_0.984-2_all.deb ... Unpacking rtax (0.984-2) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../rubygems-integration_1.8_all.deb ... Unpacking rubygems-integration (1.8) ... Selecting previously unselected package libruby2.1:amd64. Preparing to unpack .../libruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking libruby2.1:amd64 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby2.1. Preparing to unpack .../ruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking ruby2.1 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby. Preparing to unpack .../ruby_1%3a2.1.5+deb8u2_all.deb ... Unpacking ruby (1:2.1.5+deb8u2) ... Selecting previously unselected package saint. Preparing to unpack .../saint_2.4.0+dfsg-1_amd64.deb ... Unpacking saint (2.4.0+dfsg-1) ... Selecting previously unselected package samtools. Preparing to unpack .../samtools_0.1.19-1_amd64.deb ... Unpacking samtools (0.1.19-1) ... Selecting previously unselected package update-inetd. Preparing to unpack .../update-inetd_4.43_all.deb ... Unpacking update-inetd (4.43) ... Selecting previously unselected package sane-utils. Preparing to unpack .../sane-utils_1.0.24-8+deb8u2_amd64.deb ... Unpacking sane-utils (1.0.24-8+deb8u2) ... Selecting previously unselected package seaview. Preparing to unpack .../seaview_1%3a4.5.3.1-2_amd64.deb ... Unpacking seaview (1:4.5.3.1-2) ... Selecting previously unselected package seqtk. Preparing to unpack .../archives/seqtk_1.0-1_amd64.deb ... Unpacking seqtk (1.0-1) ... Selecting previously unselected package sibsim4. Preparing to unpack .../sibsim4_0.20-2_amd64.deb ... Unpacking sibsim4 (0.20-2) ... Selecting previously unselected package sigma-align. Preparing to unpack .../sigma-align_1.1.3-3_amd64.deb ... Unpacking sigma-align (1.1.3-3) ... Selecting previously unselected package sim4. Preparing to unpack .../sim4_0.0.20121010-1_amd64.deb ... Unpacking sim4 (0.0.20121010-1) ... Selecting previously unselected package smalt. Preparing to unpack .../smalt_0.7.6-4_amd64.deb ... Unpacking smalt (0.7.6-4) ... Selecting previously unselected package snp-sites. Preparing to unpack .../snp-sites_1.5.0-1_amd64.deb ... Unpacking snp-sites (1.5.0-1) ... Selecting previously unselected package soapdenovo. Preparing to unpack .../soapdenovo_1.05-2_amd64.deb ... Unpacking soapdenovo (1.05-2) ... Selecting previously unselected package soapdenovo2. Preparing to unpack .../soapdenovo2_240+dfsg-2_amd64.deb ... Unpacking soapdenovo2 (240+dfsg-2) ... Selecting previously unselected package sphinx-doc. Preparing to unpack .../sphinx-doc_1.2.3+dfsg-1_all.deb ... Unpacking sphinx-doc (1.2.3+dfsg-1) ... Selecting previously unselected package squizz. Preparing to unpack .../squizz_0.99b+dfsg-3_amd64.deb ... Unpacking squizz (0.99b+dfsg-3) ... Selecting previously unselected package sra-toolkit-libs0. Preparing to unpack .../sra-toolkit-libs0_2.3.5-2+dfsg-1_amd64.deb ... Unpacking sra-toolkit-libs0 (2.3.5-2+dfsg-1) ... Selecting previously unselected package sra-toolkit. Preparing to unpack .../sra-toolkit_2.3.5-2+dfsg-1_amd64.deb ... Unpacking sra-toolkit (2.3.5-2+dfsg-1) ... Selecting previously unselected package ssake. Preparing to unpack .../archives/ssake_3.8.2-1_all.deb ... Unpacking ssake (3.8.2-1) ... Selecting previously unselected package ssl-cert. Preparing to unpack .../ssl-cert_1.0.35_all.deb ... Unpacking ssl-cert (1.0.35) ... Selecting previously unselected package staden-common. Preparing to unpack .../staden-common_2.0.0+b10-1.1_all.deb ... Unpacking staden-common (2.0.0+b10-1.1) ... Selecting previously unselected package staden-io-lib-utils. Preparing to unpack .../staden-io-lib-utils_1.13.7-1_amd64.deb ... Unpacking staden-io-lib-utils (1.13.7-1) ... Selecting previously unselected package tklib. Preparing to unpack .../tklib_0.6-1+deb8u1_all.deb ... Unpacking tklib (0.6-1+deb8u1) ... Selecting previously unselected package staden. Preparing to unpack .../staden_2.0.0+b10-1.1_amd64.deb ... Unpacking staden (2.0.0+b10-1.1) ... Selecting previously unselected package t-coffee. Preparing to unpack .../t-coffee_11.00.8cbe486-1_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-1) ... Selecting previously unselected package tabix. Preparing to unpack .../archives/tabix_1.1-1_amd64.deb ... Unpacking tabix (1.1-1) ... Selecting previously unselected package tcllib. Preparing to unpack .../tcllib_1.16-dfsg-2_all.deb ... Unpacking tcllib (1.16-dfsg-2) ... Selecting previously unselected package tcpd. Preparing to unpack .../tcpd_7.6.q-25_amd64.deb ... Unpacking tcpd (7.6.q-25) ... Selecting previously unselected package tex-gyre. Preparing to unpack .../tex-gyre_20140520-1_all.deb ... Unpacking tex-gyre (20140520-1) ... Selecting previously unselected package texlive-extra-utils. Preparing to unpack .../texlive-extra-utils_2014.20141024-1_all.deb ... Unpacking texlive-extra-utils (2014.20141024-1) ... Selecting previously unselected package texlive-font-utils. Preparing to unpack .../texlive-font-utils_2014.20141024-1_all.deb ... Unpacking texlive-font-utils (2014.20141024-1) ... Selecting previously unselected package ttf-adf-universalis. Preparing to unpack .../ttf-adf-universalis_0.20090423-2_all.deb ... Unpacking ttf-adf-universalis (0.20090423-2) ... Selecting previously unselected package ttf-adf-gillius. Preparing to unpack .../ttf-adf-gillius_0.20090423-2_all.deb ... Unpacking ttf-adf-gillius (0.20090423-2) ... Selecting previously unselected package fonts-stix. Preparing to unpack .../fonts-stix_1.1.1-1_all.deb ... Unpacking fonts-stix (1.1.1-1) ... Selecting previously unselected package ttf-adf-accanthis. Preparing to unpack .../ttf-adf-accanthis_0.20090423-2_all.deb ... Unpacking ttf-adf-accanthis (0.20090423-2) ... Selecting previously unselected package texlive-fonts-extra. Preparing to unpack .../texlive-fonts-extra_2014.20141024-1_all.deb ... Unpacking texlive-fonts-extra (2014.20141024-1) ... Selecting previously unselected package texlive-fonts-extra-doc. Preparing to unpack .../texlive-fonts-extra-doc_2014.20141024-1_all.deb ... Unpacking texlive-fonts-extra-doc (2014.20141024-1) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../texlive-fonts-recommended_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-fonts-recommended (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-fonts-recommended-doc. Preparing to unpack .../texlive-fonts-recommended-doc_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-fonts-recommended-doc (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-latex-base-doc. Preparing to unpack .../texlive-latex-base-doc_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-latex-base-doc (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../texlive-latex-extra_2014.20141024-1_all.deb ... Unpacking texlive-latex-extra (2014.20141024-1) ... Selecting previously unselected package texlive-latex-extra-doc. Preparing to unpack .../texlive-latex-extra-doc_2014.20141024-1_all.deb ... Unpacking texlive-latex-extra-doc (2014.20141024-1) ... Selecting previously unselected package texlive-latex-recommended-doc. Preparing to unpack .../texlive-latex-recommended-doc_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-latex-recommended-doc (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-math-extra. Preparing to unpack .../texlive-math-extra_2014.20141024-1_all.deb ... Unpacking texlive-math-extra (2014.20141024-1) ... Selecting previously unselected package texlive-pictures-doc. Preparing to unpack .../texlive-pictures-doc_2014.20141024-2+deb8u1_all.deb ... Unpacking texlive-pictures-doc (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-pstricks-doc. Preparing to unpack .../texlive-pstricks-doc_2014.20141024-1_all.deb ... Unpacking texlive-pstricks-doc (2014.20141024-1) ... Selecting previously unselected package theseus. Preparing to unpack .../theseus_3.0.0-1_amd64.deb ... Unpacking theseus (3.0.0-1) ... Selecting previously unselected package tigr-glimmer. Preparing to unpack .../tigr-glimmer_3.02-3_amd64.deb ... Unpacking tigr-glimmer (3.02-3) ... Selecting previously unselected package tipa. Preparing to unpack .../tipa_2%3a1.3-20_all.deb ... Unpacking tipa (2:1.3-20) ... Selecting previously unselected package tm-align. Preparing to unpack .../tm-align_20140601+dfsg-1_amd64.deb ... Unpacking tm-align (20140601+dfsg-1) ... Selecting previously unselected package transtermhp. Preparing to unpack .../transtermhp_2.09-2_amd64.deb ... Unpacking transtermhp (2.09-2) ... Selecting previously unselected package tree-puzzle. Preparing to unpack .../tree-puzzle_5.2-7+b1_amd64.deb ... Unpacking tree-puzzle (5.2-7+b1) ... Selecting previously unselected package tree-puzzle-doc. Preparing to unpack .../tree-puzzle-doc_5.2-7_all.deb ... Unpacking tree-puzzle-doc (5.2-7) ... Selecting previously unselected package treeviewx. Preparing to unpack .../treeviewx_0.5.1+20100823-3_amd64.deb ... Unpacking treeviewx (0.5.1+20100823-3) ... Selecting previously unselected package trimmomatic. Preparing to unpack .../trimmomatic_0.32+dfsg-4_all.deb ... Unpacking trimmomatic (0.32+dfsg-4) ... Selecting previously unselected package uc-echo. Preparing to unpack .../uc-echo_1.12-7_amd64.deb ... Unpacking uc-echo (1.12-7) ... Selecting previously unselected package velvet. Preparing to unpack .../velvet_1.2.10+dfsg1-1_amd64.deb ... Unpacking velvet (1.2.10+dfsg1-1) ... Selecting previously unselected package velvetoptimiser. Preparing to unpack .../velvetoptimiser_2.2.5-2_all.deb ... Unpacking velvetoptimiser (2.2.5-2) ... Selecting previously unselected package xbitmaps. Preparing to unpack .../xbitmaps_1.1.1-2_all.deb ... Unpacking xbitmaps (1.1.1-2) ... Selecting previously unselected package xterm. Preparing to unpack .../archives/xterm_312-2_amd64.deb ... Unpacking xterm (312-2) ... Selecting previously unselected package vprerex. Preparing to unpack .../vprerex_6.5.3-1_amd64.deb ... Unpacking vprerex (6.5.3-1) ... Selecting previously unselected package wise-data. Preparing to unpack .../wise-data_2.4.1-17_all.deb ... Unpacking wise-data (2.4.1-17) ... Selecting previously unselected package wise. Preparing to unpack .../wise_2.4.1-17_amd64.deb ... Unpacking wise (2.4.1-17) ... Selecting previously unselected package x11-utils. Preparing to unpack .../x11-utils_7.7+2_amd64.deb ... Unpacking x11-utils (7.7+2) ... Selecting previously unselected package x11-xserver-utils. Preparing to unpack .../x11-xserver-utils_7.7+3+b1_amd64.deb ... Unpacking x11-xserver-utils (7.7+3+b1) ... Selecting previously unselected package xauth. Preparing to unpack .../xauth_1%3a1.0.9-1_amd64.deb ... Unpacking xauth (1:1.0.9-1) ... Selecting previously unselected package xdg-user-dirs. Preparing to unpack .../xdg-user-dirs_0.15-2_amd64.deb ... Unpacking xdg-user-dirs (0.15-2) ... Selecting previously unselected package xsltproc. Preparing to unpack .../xsltproc_1.1.28-2+deb8u3_amd64.deb ... Unpacking xsltproc (1.1.28-2+deb8u3) ... Selecting previously unselected package zalign. Preparing to unpack .../zalign_0.9.1-1+b1_amd64.deb ... Unpacking zalign (0.9.1-1+b1) ... Selecting previously unselected package acedb-other. Preparing to unpack .../acedb-other_4.9.39+dfsg.01-5_amd64.deb ... Unpacking acedb-other (4.9.39+dfsg.01-5) ... Selecting previously unselected package acedb-other-belvu. Preparing to unpack .../acedb-other-belvu_4.9.39+dfsg.01-5_amd64.deb ... Unpacking acedb-other-belvu (4.9.39+dfsg.01-5) ... Selecting previously unselected package acedb-other-dotter. Preparing to unpack .../acedb-other-dotter_4.9.39+dfsg.01-5_amd64.deb ... Unpacking acedb-other-dotter (4.9.39+dfsg.01-5) ... Selecting previously unselected package ampliconnoise. Preparing to unpack .../ampliconnoise_1.29-2_amd64.deb ... Unpacking ampliconnoise (1.29-2) ... Selecting previously unselected package autodock-vina. Preparing to unpack .../autodock-vina_1.1.2-3+b1_amd64.deb ... Unpacking autodock-vina (1.1.2-3+b1) ... Selecting previously unselected package python-gdata. Preparing to unpack .../python-gdata_2.0.18+dfsg1-2_all.deb ... Unpacking python-gdata (2.0.18+dfsg1-2) ... Selecting previously unselected package bauble. Preparing to unpack .../bauble_0.9.7-2_all.deb ... Unpacking bauble (0.9.7-2) ... Selecting previously unselected package concavity. Preparing to unpack .../concavity_0.1-2_amd64.deb ... Unpacking concavity (0.1-2) ... Selecting previously unselected package conservation-code. Preparing to unpack .../conservation-code_20110309.0-3_all.deb ... Unpacking conservation-code (20110309.0-3) ... Selecting previously unselected package critterding. Preparing to unpack .../critterding_1.0-beta12.1-1.2_amd64.deb ... Unpacking critterding (1.0-beta12.1-1.2) ... Selecting previously unselected package disulfinder-data. Preparing to unpack .../disulfinder-data_1.2.11-4_all.deb ... Unpacking disulfinder-data (1.2.11-4) ... Selecting previously unselected package disulfinder. Preparing to unpack .../disulfinder_1.2.11-4_amd64.deb ... Unpacking disulfinder (1.2.11-4) ... Selecting previously unselected package edtsurf. Preparing to unpack .../edtsurf_0.2009-3_amd64.deb ... Unpacking edtsurf (0.2009-3) ... Selecting previously unselected package fasttree. Preparing to unpack .../fasttree_2.1.7-2_amd64.deb ... Unpacking fasttree (2.1.7-2) ... Selecting previously unselected package libffindex0. Preparing to unpack .../libffindex0_0.9.9.3-2_amd64.deb ... Unpacking libffindex0 (0.9.9.3-2) ... Selecting previously unselected package ffindex. Preparing to unpack .../ffindex_0.9.9.3-2_amd64.deb ... Unpacking ffindex (0.9.9.3-2) ... Selecting previously unselected package freecontact. Preparing to unpack .../freecontact_1.0.21-3+b1_amd64.deb ... Unpacking freecontact (1.0.21-3+b1) ... Selecting previously unselected package genometools. Preparing to unpack .../genometools_1.5.3-2_amd64.deb ... Unpacking genometools (1.5.3-2) ... Selecting previously unselected package gromacs-data. Preparing to unpack .../gromacs-data_5.0.2-1_all.deb ... Unpacking gromacs-data (5.0.2-1) ... Selecting previously unselected package gromacs. Preparing to unpack .../gromacs_5.0.2-1_amd64.deb ... Unpacking gromacs (5.0.2-1) ... Selecting previously unselected package hhsuite-data. Preparing to unpack .../hhsuite-data_2.0.16-5_all.deb ... Unpacking hhsuite-data (2.0.16-5) ... Selecting previously unselected package hhsuite. Preparing to unpack .../hhsuite_2.0.16-5_amd64.deb ... Unpacking hhsuite (2.0.16-5) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../libconfig-inifiles-perl_2.83-3_all.deb ... Unpacking libconfig-inifiles-perl (2.83-3) ... Selecting previously unselected package libev-perl. Preparing to unpack .../libev-perl_4.18-1_amd64.deb ... Unpacking libev-perl (4.18-1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../libhwloc-plugins_1.10.0-3_amd64.deb ... Unpacking libhwloc-plugins (1.10.0-3) ... Selecting previously unselected package librg-exception-perl. Preparing to unpack .../librg-exception-perl_1.0.3-1_all.deb ... Unpacking librg-exception-perl (1.0.3-1) ... Selecting previously unselected package librg-reprof-bundle-perl. Preparing to unpack .../librg-reprof-bundle-perl_1.0.1-1_all.deb ... Unpacking librg-reprof-bundle-perl (1.0.1-1) ... Selecting previously unselected package profphd-utils. Preparing to unpack .../profphd-utils_1.0.10-1_amd64.deb ... Unpacking profphd-utils (1.0.10-1) ... Selecting previously unselected package librg-utils-perl. Preparing to unpack .../librg-utils-perl_1.0.43-2_all.deb ... Unpacking librg-utils-perl (1.0.43-2) ... Selecting previously unselected package libset-scalar-perl. Preparing to unpack .../libset-scalar-perl_1.29-1_all.deb ... Unpacking libset-scalar-perl (1.29-1) ... Selecting previously unselected package lynx-cur. Preparing to unpack .../lynx-cur_2.8.9dev1-2+deb8u1_amd64.deb ... Unpacking lynx-cur (2.8.9dev1-2+deb8u1) ... Selecting previously unselected package lynx. Preparing to unpack .../lynx_2.8.9dev1-2+deb8u1_all.deb ... Unpacking lynx (2.8.9dev1-2+deb8u1) ... Selecting previously unselected package med-tasks. Preparing to unpack .../archives/med-tasks_2.0_all.deb ... Unpacking med-tasks (2.0) ... Selecting previously unselected package med-config. Preparing to unpack .../med-config_2.0_all.deb ... Unpacking med-config (2.0) ... Selecting previously unselected package med-bio. Preparing to unpack .../archives/med-bio_2.0_all.deb ... Unpacking med-bio (2.0) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../openmpi-common_1.6.5-9.1+deb8u1_all.deb ... Unpacking openmpi-common (1.6.5-9.1+deb8u1) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../openmpi-bin_1.6.5-9.1+deb8u1_amd64.deb ... Unpacking openmpi-bin (1.6.5-9.1+deb8u1) ... Selecting previously unselected package mpi-default-bin. Preparing to unpack .../mpi-default-bin_1.0.2+nmu2_amd64.deb ... Unpacking mpi-default-bin (1.0.2+nmu2) ... Selecting previously unselected package ncbi-seg. Preparing to unpack .../ncbi-seg_0.0.20000620-2_amd64.deb ... Unpacking ncbi-seg (0.0.20000620-2) ... Selecting previously unselected package neobio. Preparing to unpack .../neobio_0.0.20030929-1.1_all.deb ... Unpacking neobio (0.0.20030929-1.1) ... Selecting previously unselected package profnet-norsnet. Preparing to unpack .../profnet-norsnet_1.0.22-2_amd64.deb ... Unpacking profnet-norsnet (1.0.22-2) ... Selecting previously unselected package norsnet. Preparing to unpack .../norsnet_1.0.17-1_all.deb ... Unpacking norsnet (1.0.17-1) ... Selecting previously unselected package norsp. Preparing to unpack .../archives/norsp_1.0.6-1_all.deb ... Unpacking norsp (1.0.6-1) ... Selecting previously unselected package populations. Preparing to unpack .../populations_1.2.33+svn0120106-2.1_amd64.deb ... Unpacking populations (1.2.33+svn0120106-2.1) ... Selecting previously unselected package pp-popularity-contest. Preparing to unpack .../pp-popularity-contest_1.0.6-2+b1_amd64.deb ... Unpacking pp-popularity-contest (1.0.6-2+b1) ... Selecting previously unselected package predictnls. Preparing to unpack .../predictnls_1.0.20-1_all.deb ... Unpacking predictnls (1.0.20-1) ... Selecting previously unselected package profnet-bval. Preparing to unpack .../profnet-bval_1.0.22-2_amd64.deb ... Unpacking profnet-bval (1.0.22-2) ... Selecting previously unselected package profbval. Preparing to unpack .../profbval_1.0.22-1_all.deb ... Unpacking profbval (1.0.22-1) ... Selecting previously unselected package profnet-isis. Preparing to unpack .../profnet-isis_1.0.22-2_amd64.deb ... Unpacking profnet-isis (1.0.22-2) ... Selecting previously unselected package profisis. Preparing to unpack .../profisis_1.0.11-1_all.deb ... Unpacking profisis (1.0.11-1) ... Selecting previously unselected package profnet-prof. Preparing to unpack .../profnet-prof_1.0.22-2_amd64.deb ... Unpacking profnet-prof (1.0.22-2) ... Selecting previously unselected package profphd-net. Preparing to unpack .../profphd-net_1.0.22-2_amd64.deb ... Unpacking profphd-net (1.0.22-2) ... Selecting previously unselected package profphd. Preparing to unpack .../profphd_1.0.40-1_all.deb ... Unpacking profphd (1.0.40-1) ... Selecting previously unselected package proftmb. Preparing to unpack .../proftmb_1.1.12-2_amd64.deb ... Unpacking proftmb (1.1.12-2) ... Selecting previously unselected package reprof. Preparing to unpack .../reprof_1.0.1-1_all.deb ... Unpacking reprof (1.0.1-1) ... Selecting previously unselected package predictprotein. Preparing to unpack .../predictprotein_1.1.06-1_all.deb ... Unpacking predictprotein (1.1.06-1) ... Selecting previously unselected package profnet-chop. Preparing to unpack .../profnet-chop_1.0.22-2_amd64.deb ... Unpacking profnet-chop (1.0.22-2) ... Selecting previously unselected package profnet-con. Preparing to unpack .../profnet-con_1.0.22-2_amd64.deb ... Unpacking profnet-con (1.0.22-2) ... Selecting previously unselected package profnet-md. Preparing to unpack .../profnet-md_1.0.22-2_amd64.deb ... Unpacking profnet-md (1.0.22-2) ... Selecting previously unselected package profnet-snapfun. Preparing to unpack .../profnet-snapfun_1.0.22-2_amd64.deb ... Unpacking profnet-snapfun (1.0.22-2) ... Selecting previously unselected package pvm. Preparing to unpack .../pvm_3.4.5-12.6_amd64.deb ... Unpacking pvm (3.4.5-12.6) ... Selecting previously unselected package pynast. Preparing to unpack .../pynast_1.2.2-1_all.deb ... Unpacking pynast (1.2.2-1) ... Selecting previously unselected package python-mpi4py. Preparing to unpack .../python-mpi4py_1.3.1+hg20131106-2_amd64.deb ... Unpacking python-mpi4py (1.3.1+hg20131106-2) ... Selecting previously unselected package qiime. Preparing to unpack .../qiime_1.8.0+dfsg-4_amd64.deb ... Unpacking qiime (1.8.0+dfsg-4) ... Selecting previously unselected package ray. Preparing to unpack .../archives/ray_2.3.1-1_amd64.deb ... Unpacking ray (2.3.1-1) ... Selecting previously unselected package science-tasks. Preparing to unpack .../science-tasks_1.4_all.deb ... Unpacking science-tasks (1.4) ... Selecting previously unselected package science-config. Preparing to unpack .../science-config_1.4_all.deb ... Unpacking science-config (1.4) ... Selecting previously unselected package science-biology. Preparing to unpack .../science-biology_1.4_all.deb ... Unpacking science-biology (1.4) ... Selecting previously unselected package snap. Preparing to unpack .../snap_2013-11-29-1_amd64.deb ... Unpacking snap (2013-11-29-1) ... Selecting previously unselected package vcftools. Preparing to unpack .../vcftools_0.1.12+dfsg-1_amd64.deb ... Unpacking vcftools (0.1.12+dfsg-1) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libboost-iostreams1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up libjson-c2:amd64 (0.11-4) ... Setting up libpipeline1:amd64 (1.4.0-1) ... Setting up libpopt0:amd64 (1.16-10) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up groff-base (1.22.2-8) ... Setting up bsdmainutils (9.0.6) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-5) ... Building database of manual pages ... Setting up libasprintf0c2:amd64 (0.19.3-2) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libwrap0:amd64 (7.6.q-25) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up perl (5.20.2-3+deb8u11) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up mime-support (3.58) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libapr1:amd64 (1.5.1-3) ... Setting up libaprutil1:amd64 (1.5.4-1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up apache2-bin (2.4.10-10+deb8u12) ... Setting up apache2-utils (2.4.10-10+deb8u12) ... Setting up apache2-data (2.4.10-10+deb8u12) ... Setting up apache2 (2.4.10-10+deb8u12) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: policy-rc.d denied execution of start. Setting up fonts-circos-symbols (0.66-1) ... Setting up fonts-cmu (0.7.0-3) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libcarp-always-perl (0.12-1) ... Setting up libconfig-general-perl (2.56-1) ... Setting up libdata-dumper-simple-perl (0.11-4) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fonts-liberation (1.07.4-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up libvpx1:amd64 (1.3.0-3+deb8u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up libgd3:amd64 (2.1.0-5+deb8u11) ... Setting up libgd-perl (2.53-1+b1) ... Setting up libgetopt-simple-perl (1.52-4) ... Setting up libmath-bezier-perl (0.01-1) ... Setting up libmath-round-perl (0.06-4) ... Setting up libparams-classify-perl (0.013-4+b2) ... Setting up libmodule-runtime-perl (0.014-1) ... Setting up libtry-tiny-perl (0.22-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libparams-validate-perl (1.13-1+b1) ... Setting up libreadonly-perl (2.000-1) ... Setting up libset-intspan-perl (1.19-1) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up liblist-allutils-perl (0.09-1) ... Setting up libfile-basedir-perl (0.03-1) ... Setting up libmath-vec-perl (1.01-2) ... Setting up libspiffy-perl (0.41-1) ... Setting up libio-all-perl (0.79-1) ... Setting up libmath-vecstat-perl (0.08-1) ... Setting up libgraphics-colornames-perl (2.11-6) ... Setting up libgraphics-colorobject-perl (0.5.0-6) ... Setting up libtext-format-perl (0.59-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libfont-ttf-perl (1.04-1) ... Setting up libclone-perl (0.37-1+b1) ... Setting up circos (0.66-1) ... Setting up circos-tools (0.18-1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up fonts-droid (1:4.4.4r2-6) ... Setting up fonts-lato (2.0-1) ... Setting up libdrm2:amd64 (2.4.58-2) ... Setting up libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Setting up libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-dri2-0:amd64 (1.10-3+b1) ... Setting up libxcb-dri3-0:amd64 (1.10-3+b1) ... Setting up libxcb-glx0:amd64 (1.10-3+b1) ... Setting up libxcb-present0:amd64 (1.10-3+b1) ... Setting up libxcb-sync1:amd64 (1.10-3+b1) ... Setting up libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxshmfence1:amd64 (1.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Setting up libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Setting up libxi6:amd64 (2:1.7.4-1+deb8u1) ... Setting up freeglut3:amd64 (2.8.1-2) ... Setting up gawk (1:4.1.1+dfsg-1) ... Setting up imagemagick-common (8:6.8.9.9-5+deb8u12) ... Setting up libamd2.3.1:amd64 (1:4.2.1-3) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... Setting up libarchive13:amd64 (3.1.2-11+deb8u3) ... Setting up libart-2.0-2:amd64 (2.3.21-2) ... Setting up libasan1:amd64 (4.9.2-10+deb8u1) ... Setting up libasound2-data (1.0.28-1) ... Setting up libasound2:amd64 (1.0.28-1) ... Setting up libaspell15:amd64 (0.60.7~20110707-1.3) ... Setting up libasyncns0:amd64 (0.8-5) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... Setting up libatk1.0-data (2.14.0-1) ... Setting up libatk1.0-0:amd64 (2.14.0-1) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libatspi2.0-0:amd64 (2.14.0-1) ... Setting up libatk-bridge2.0-0:amd64 (2.14.0-2) ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Setting up libgdk-pixbuf2.0-common (2.31.1-2+deb8u7) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Setting up libgtk2.0-common (2.24.25-3+deb8u2) ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libcups2:amd64 (1.7.5-11+deb8u2) ... Setting up libthai-data (0.1.21-1) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libxcomposite1:amd64 (1:0.4.4-1) ... Setting up libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b1) ... Setting up libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Setting up shared-mime-info (1.3-1) ... Setting up libgtk2.0-0:amd64 (2.24.25-3+deb8u2) ... Setting up libatk-wrapper-java (0.30.5-1) ... Setting up libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libatomic1:amd64 (4.9.2-10+deb8u1) ... Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libaudio2:amd64 (1.9.4-3) ... Setting up libboost-system1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-chrono1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-date-time1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-filesystem1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-math1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-serialization1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up libnuma1:amd64 (2.0.10-1) ... Setting up libhwloc5:amd64 (1.10.0-3) ... Setting up libcr0 (0.8.5-2.2) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libibverbs1 (1.1.8-1.1) ... Setting up libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Setting up libboost-mpi1.55.0 (1.55.0+dfsg-3) ... Setting up libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-random1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libicu52:amd64 (52.1-8+deb8u7) ... Setting up libboost-regex1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-thread1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-timer1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libcaca0:amd64 (0.99.beta19-2) ... Setting up libcairo-gobject2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libogg0:amd64 (1.3.2-1) ... Setting up libtdb1:amd64 (1.3.6-0+deb8u1) ... Setting up libvorbis0a:amd64 (1.3.4-2+deb8u1) ... Setting up libvorbisfile3:amd64 (1.3.4-2+deb8u1) ... Setting up libcanberra0:amd64 (0.30-2.1) ... Setting up libdconf1:amd64 (0.22.0-1) ... Setting up dconf-service (0.22.0-1) ... Setting up dconf-gsettings-backend:amd64 (0.22.0-1) ... Setting up hicolor-icon-theme (0.13-1) ... Setting up libwayland-client0:amd64 (1.6.0-2) ... Setting up libwayland-cursor0:amd64 (1.6.0-2) ... Setting up xkb-data (2.12-1) ... Setting up libxkbcommon0:amd64 (0.4.3-2) ... Setting up libcroco3:amd64 (0.6.8-3+b1) ... Setting up librsvg2-2:amd64 (2.40.5-1+deb8u2) ... Setting up librsvg2-common:amd64 (2.40.5-1+deb8u2) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up libcolord2:amd64 (1.2.1-1+b2) ... Setting up libjson-glib-1.0-common (1.0.2-1) ... Setting up libjson-glib-1.0-0:amd64 (1.0.2-1) ... Setting up libproxy1:amd64 (0.4.11-4+b2) ... Setting up glib-networking-common (2.42.0-2) ... Setting up glib-networking-services (2.42.0-2) ... Setting up gsettings-desktop-schemas (3.14.1-1) ... Setting up glib-networking:amd64 (2.42.0-2) ... Setting up libsoup2.4-1:amd64 (2.48.0-1+deb8u1) ... Setting up libsoup-gnome2.4-1:amd64 (2.48.0-1+deb8u1) ... Setting up librest-0.7-0:amd64 (0.7.92-3) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libcdparanoia0:amd64 (3.10.2+debian-11) ... Setting up libcfitsio2:amd64 (3.370-2+deb8u1) ... Setting up libcilkrts5:amd64 (4.9.2-10+deb8u1) ... Setting up libisl10:amd64 (0.12.2-2) ... Setting up libcloog-isl4:amd64 (0.18.2-1+b2) ... Setting up libcolamd2.8.0:amd64 (1:4.2.1-3) ... Setting up libgudev-1.0-0:amd64 (215-17+deb8u7) ... Setting up libusb-1.0-0:amd64 (2:1.0.19-1) ... Setting up libgusb2:amd64 (0.1.6-5) ... Setting up libcolorhug2:amd64 (1.2.1-1+b2) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Setting up libcurl3:amd64 (7.38.0-4+deb8u11) ... Setting up libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Setting up libdirectfb-1.2-9:amd64 (1.2.10.0-5.1) ... Setting up libdjvulibre-text (3.5.25.4-4) ... Setting up libdjvulibre21:amd64 (3.5.25.4-4+b1) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libpciaccess0:amd64 (0.13.2-3+b1) ... Setting up libdrm-intel1:amd64 (2.4.58-2) ... Setting up libdrm-nouveau2:amd64 (2.4.58-2) ... Setting up libdrm-radeon1:amd64 (2.4.58-2) ... Setting up libelf1:amd64 (0.159-4.2) ... Setting up libelfg0:amd64 (0.8.13-5) ... Setting up libexif12:amd64 (0.6.21-2) ... Setting up libfann2:amd64 (2.1.0~beta+dfsg-1) ... Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libfftw3-double3:amd64 (3.3.4-2) ... Setting up libfftw3-single3:amd64 (3.3.4-2) ... Setting up libflac8:amd64 (1.3.0-3) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libfltk1.3:amd64 (1.3.2-6+b1) ... Setting up libfltk-images1.3:amd64 (1.3.2-6+b1) ... Setting up libfontenc1:amd64 (1:1.1.2-1+b2) ... Setting up libglu1-mesa:amd64 (9.0.0-2) ... Setting up libftgl2:amd64 (2.1.3~rc5-4+nmu1) ... Setting up libunistring0:amd64 (0.9.3-5.2+b1) ... Setting up libgettextpo0:amd64 (0.19.3-2) ... Setting up libgflags2 (2.0-2.1) ... Setting up libgif4:amd64 (4.1.6-11+deb8u1) ... Setting up libllvm3.5:amd64 (1:3.5-10) ... Setting up libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Setting up libglade2-0:amd64 (1:2.6.4-2) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libglew1.10:amd64 (1.10.0-3) ... Setting up libglpk36:amd64 (4.55-1) ... Setting up libgmpxx4ldbl:amd64 (2:6.0.0+dfsg-6) ... Setting up libunwind8 (1.1-3.2) ... Setting up libgoogle-glog0 (0.3.3-2) ... Setting up libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... Setting up libgphoto2-6:amd64 (2.5.4-1.1+b2) ... Setting up libgstreamer1.0-0:amd64 (1.4.4-2+deb8u1) ... Setting up liborc-0.4-0:amd64 (1:0.4.22-1) ... Setting up iso-codes (3.57-1) ... Setting up libgstreamer-plugins-base1.0-0:amd64 (1.4.4-2+deb8u1) ... Setting up libharfbuzz-icu0:amd64 (0.9.35-2) ... Setting up libhdf5-8:amd64 (1.8.13+docs-15+deb8u1) ... Setting up libieee1284-3:amd64 (0.2.11-12) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libilmbase6:amd64 (1.0.1-6.1) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libitm1:amd64 (4.9.2-10+deb8u1) ... Setting up liblqr-1-0:amd64 (0.4.2-2) ... Setting up liblsan0:amd64 (4.9.2-10+deb8u1) ... Setting up libmagickcore-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... Setting up libmagickwand-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... Setting up libmng1:amd64 (1.0.10+dfsg-3.1+b3) ... Setting up libmotif-common (2.3.4-6+deb8u1) ... Setting up libmpdec2:amd64 (2.4.1-1) ... Setting up mysql-common (5.5.60-0+deb8u1) ... Setting up libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up libnotify4:amd64 (0.7.6-2) ... Setting up libnspr4:amd64 (2:4.12-1+debu8u1) ... Setting up libnss3:amd64 (2:3.26-1+debu8u3) ... Setting up libobjc4:amd64 (4.9.2-10+deb8u1) ... Setting up libopenexr6:amd64 (1.6.1-8) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up dbus (1.8.22-0+deb8u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libpam-systemd:amd64 (215-17+deb8u7) ... Setting up libpangoxft-1.0-0:amd64 (1.36.8-3) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:amd64 (2:8.35-3.3+deb8u4) ... Setting up libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Setting up libpolkit-gobject-1-0:amd64 (0.105-15~deb8u2) ... Setting up libpolkit-agent-1-0:amd64 (0.105-15~deb8u2) ... Setting up libpolkit-backend-1-0:amd64 (0.105-15~deb8u2) ... Setting up libopenjpeg5:amd64 (1:1.5.2-3) ... Setting up libpoppler46:amd64 (0.26.5-2+deb8u4) ... Setting up qtcore4-l10n (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqtcore4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-xml:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqtgui4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libpoppler-qt4-4:amd64 (0.26.5-2+deb8u4) ... Setting up libpq5:amd64 (9.4.18-0+deb8u1) ... Setting up libpth20:amd64 (2.0.7-20) ... Setting up libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Setting up libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Setting up libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Setting up libpulse0:amd64 (5.0-13) ... Setting up libpython2.7:amd64 (2.7.9-2+deb8u1) ... Setting up libc-dev-bin (2.19-18+deb8u10) ... Setting up linux-libc-dev:amd64 (3.16.56-1+deb8u1) ... Setting up libc6-dev:amd64 (2.19-18+deb8u10) ... Setting up libexpat1-dev:amd64 (2.1.0-6+deb8u4) ... Setting up libpython2.7-dev:amd64 (2.7.9-2+deb8u1) ... Setting up libpython3.4-minimal:amd64 (3.4.2-1) ... Setting up libpython3.4-stdlib:amd64 (3.4.2-1) ... Setting up libqtdbus4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-network:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-opengl:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-sql:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-sql-mysql:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-svg:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-test:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-xmlpatterns:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqtwebkit4:amd64 (2.3.4.dfsg-3) ... Setting up librelion-1.3-1:amd64 (1.3+dfsg-2) ... Setting up libsane-common (1.0.24-8+deb8u2) ... Setting up libv4lconvert0:amd64 (1.6.0-2) ... Setting up libv4l-0:amd64 (1.6.0-2) ... Setting up libsane:amd64 (1.0.24-8+deb8u2) ... Adding scanner group... Setting up libsctp1:amd64 (1.0.16+dfsg-2) ... Setting up libsdl1.2debian:amd64 (1.2.15-10+b1) ... Setting up libtcl8.5:amd64 (8.5.17-1) ... Setting up libtcl8.6:amd64 (8.6.2+dfsg-2) ... Setting up libtheora0:amd64 (1.1.1+dfsg.1-6) ... Setting up libtinyxml2.6.2:amd64 (2.6.2-2) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.5:amd64 (8.5.17-1) ... Setting up libtk8.6:amd64 (8.6.2-1) ... Setting up libtre5:amd64 (0.8.0-4+deb8u1) ... Setting up libtsan0:amd64 (4.9.2-10+deb8u1) ... Setting up libubsan0:amd64 (4.9.2-10+deb8u1) ... Setting up libxm4:amd64 (2.3.4-6+deb8u1) ... Setting up libvibrant6b:amd64 (6.1.20120620-8) ... Setting up libvisual-0.4-0:amd64 (0.4.0-6) ... Setting up libwmf0.2-7:amd64 (0.2.8.4-10.3+deb8u2) ... Setting up libwxbase3.0-0:amd64 (3.0.2-1+b1) ... Setting up libwxgtk3.0-0:amd64 (3.0.2-1+b1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up libxcb-shape0:amd64 (1.10-3+b1) ... Setting up libxmuu1:amd64 (2:1.1.2-1) ... Setting up libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Setting up libxv1:amd64 (2:1.0.10-1+deb8u1) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b1) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up libzzip-0-13:amd64 (0.13.62-3+deb8u1) ... Setting up lua-filesystem:amd64 (1.6.2-3) ... Setting up lua-lpeg:amd64 (0.12-1) ... Setting up lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Setting up metastudent-data (1.0.1-2) ... Setting up metastudent-data-2 (1.0.0-1) ... Setting up poppler-data (0.4.7-1) ... Setting up python3.4-minimal (3.4.2-1) ... Setting up sgml-base (1.26+nmu4) ... Setting up libcbf0:amd64 (0.9.2.2-1) ... Setting up libcvector2:amd64 (1.0.3.1-1.1) ... Setting up libcneartree5:amd64 (3.1.1-2.1) ... Setting up libcqrlib2:amd64 (1.1.2-2.1) ... Setting up libflite1:amd64 (1.4-release-12) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libatlas3-base (3.10.2-7) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... Setting up libfreecontact0 (1.0.21-3+b1) ... Setting up libhmsbeagle1 (2.1.2-1) ... Setting up libmpc3:amd64 (1.0.2-1) ... Setting up libpangox-1.0-0:amd64 (0.0.2-5) ... Setting up libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0 to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode Setting up libwebp5:amd64 (0.4.1-1.2+b2) ... Setting up libwebpdemux1:amd64 (0.4.1-1.2+b2) ... Setting up libwebpmux1:amd64 (0.4.1-1.2+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Setting up rate4site (3.0.0-1) ... Setting up dmidecode (2.12-3) ... Setting up iproute2 (3.16.0-2) ... Setting up ifupdown (0.7.53.1) ... Creating /etc/network/interfaces. Setting up init-system-helpers (1.22) ... Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up manpages (3.74-1) ... Setting up netbase (5.3) ... Setting up bc (1.06.95-9) ... Setting up bzip2 (1.0.6-7+b3) ... Setting up file (1:5.22+15-2+deb8u4) ... Setting up gettext-base (0.19.3-2) ... Setting up krb5-locales (1.12.1+dfsg-19+deb8u4) ... Setting up openssh-client (1:6.7p1-5+deb8u4) ... Setting up patch (2.7.5-1+deb8u1) ... Setting up python-support (1.0.15) ... Setting up xz-utils (5.1.1alpha+20120614-2+b3) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up mummer (3.23~dfsg-2) ... Setting up abacas (1.3.1-2) ... Setting up gnustep-common (2.6.6-3) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done. Setting up gnustep-base-common (1.24.7-1) ... Setting up libgnustep-base1.24 (1.24.7-1) ... Setting up gnustep-base-runtime (1.24.7-1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up mknfonts.tool (0.5-11+b4) ... Setting up fonts-freefont-ttf (20120503-4) ... Setting up gnustep-gui-common (0.24.0-3) ... Setting up libao-common (1.1.0-3) ... Setting up libao4 (1.1.0-3) ... Setting up libgnustep-gui0.24 (0.24.0-3) ... Setting up gnustep-gui-runtime (0.24.0-3) ... Setting up gnustep-back-common (0.24.0-4) ... Generating GNUstep nfont descriptions... done. Setting up gnustep-back0.24-cairo (0.24.0-4) ... update-alternatives: using /usr/lib/GNUstep/Bundles/libgnustep-cairo-024.bundle to provide /usr/lib/GNUstep/Bundles/libgnustep-back-024.bundle (gnustep-back-024) in auto mode Setting up gnustep-back0.24 (0.24.0-4) ... Setting up libgsl0ldbl (1.16+dfsg-2) ... Setting up adun.app (0.81-6+b1) ... Setting up aevol (4.4-1) ... Setting up tzdata-java (2018e-0+deb8u1) ... Setting up java-common (0.52) ... Setting up libcommons-pool-java (1.6-2) ... Setting up libcommons-collections3-java (3.2.1-7+deb8u1) ... Setting up libcommons-dbcp-java (1.4-5) ... Setting up libservlet2.5-java (6.0.45+dfsg-1~deb8u1) ... Setting up libhsqldb-java (2.2.9+dfsg-4) ... Setting up libapache-pom-java (10-2) ... Setting up libcommons-parent-java (22-2) ... Setting up libcommons-lang-java (2.6-4) ... Setting up libcommons-cli-java (1.2-3) ... Setting up libtamuanova-0.2 (0.2-3) ... Setting up libmath-tamuanova-perl (1.0.2-2+b2) ... Setting up altree (1.3.1-2+b1) ... Setting up amap-align (2.2-4) ... Setting up libelk0 (3.99.8-2.1) ... Setting up libprotobuf9:amd64 (2.6.1-1) ... Setting up libanfo0 (0.98-4+b1) ... Setting up anfo (0.98-4+b1) ... Setting up libmaloc1 (0.2-3) ... Setting up apbs (1.4-1) ... Setting up aragorn (1.2.36-4) ... Setting up python-decorator (3.4.0-2) ... Setting up python-numpy (1:1.8.2-2) ... Setting up python-scipy (0.14.0-2) ... Setting up python-htseq (0.5.4p3-2) ... Setting up python-six (1.8.0-1) ... Setting up python-dateutil (2.2-2) ... Setting up fonts-lyx (2.1.2-2) ... Setting up python-matplotlib-data (1.4.2-3.1) ... Setting up python-pyparsing (2.0.3+dfsg1-1) ... Setting up python-tz (2012c+dfsg-0.1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up libjs-jquery-ui (1.10.1+dfsg-1) ... Setting up python-mock (1.0.1-3) ... Setting up python-pkg-resources (5.5.1-1) ... Setting up python-nose (1.3.4-1) ... Setting up python-matplotlib (1.4.2-3.1) ... Setting up arden (1.0-1) ... Setting up emacsen-common (2.0.8) ... Setting up dictionaries-common (1.23.17) ... Setting up aspell (0.60.7~20110707-1.3) ... Setting up aspell-en (7.1-0-1.1) ... Setting up at-spi2-core (2.14.0-1) ... Setting up autodock (4.2.6-2) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up autogrid (4.2.6-2) ... Setting up autopoint (0.19.3-2) ... Setting up autotools-dev (20140911.1) ... Setting up libball1.4-data (1.4.2+20140406-1) ... Setting up libball1.4 (1.4.2+20140406-1+b2) ... Setting up libballview1.4 (1.4.2+20140406-1+b2) ... Setting up python-sip (4.16.4+dfsg-1) ... Setting up python-ball (1.4.2+20140406-1+b2) ... Setting up python-ballview (1.4.2+20140406-1+b2) ... Setting up ballview (1.4.2+20140406-1+b2) ... Setting up libbamtools2.3.0 (2.3.0+dfsg-2) ... Setting up libjsoncpp0 (0.6.0~rc2-3.1) ... Setting up bamtools (2.3.0+dfsg-2) ... Setting up bedtools (2.21.0-1) ... Setting up binfmt-support (2.1.5-1) ... update-binfmts: warning: found manually created entry for python2.7 in /proc/sys/fs/binfmt_misc; leaving it alone invoke-rc.d: policy-rc.d denied execution of start. Setting up binutils (2.25-5+deb8u1) ... Setting up libhamcrest-java (1.3-5) ... Setting up libcommons-codec-java (1.9-1) ... Setting up libcommons-logging-java (1.2-1) ... Setting up libcommons-httpclient-java (3.1-11+deb8u1) ... Setting up libcommons-net2-java (2.2-2) ... Setting up libmail-java (1.5.2-3) ... Setting up libjcommon-java (1.0.16-4) ... Setting up libjaxen-java (1.1.6-1) ... Setting up libjdom1-java (1.1.3-1) ... Setting up libwsdl4j-java (1.6.3-1) ... Setting up libcommons-discovery-java (0.5-3) ... Setting up libaxis-java (1.4-22) ... Setting up libjava-xmlbuilder-java (0.4-2) ... Setting up libjets3t-java (0.8.1+dfsg-1) ... Setting up libjgoodies-common-java (1.4.0-2) ... Setting up libjgoodies-forms-java (1.6.0-4) ... Setting up libjzlib-java (1.1.3-1) ... Setting up libjsch-java (0.1.51-1) ... Setting up liblog4j1.2-java (1.2.17-5) ... Setting up libmysql-java (5.1.42-1~deb8u1) ... Setting up liboro-java (2.0.8a-9) ... Setting up libregexp-java (1.5-3) ... Setting up libisorelax-java (20041111-8) ... Setting up librelaxng-datatype-java (1.0+ds1-3) ... Setting up libxml-commons-resolver1.1-java (1.2-7) ... Setting up libxml-commons-external-java (1.4.01-2) ... Setting up libxerces2-java (2.11.0-7) ... Setting up libxpp2-java (2.1.10-7) ... Setting up libxpp3-java (1.1.4c-2) ... Setting up libxom-java (1.2.10-1) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libdbd-mysql-perl (4.028-2+deb8u2) ... Setting up libterm-readkey-perl (2.32-1+b1) ... Setting up mysql-client-5.5 (5.5.60-0+deb8u1) ... Setting up mysql-client (5.5.60-0+deb8u1) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up libbio-perl-run-perl (1.6.9-2) ... Setting up bioperl-run (1.6.9-2) ... Setting up biosquid (1.9g+cvs20050121-4) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up menu (2.1.47) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-1) ... Setting up blt (2.5.3+dfsg-1) ... Setting up boxshade (3.3.1-8) ... Setting up cpp-4.9 (4.9.2-10+deb8u1) ... Setting up cpp (4:4.9.2-2) ... Setting up libgcc-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Setting up gcc-4.9 (4.9.2-10+deb8u1) ... Setting up gcc (4:4.9.2-2) ... Setting up libstdc++-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Setting up g++-4.9 (4.9.2-10+deb8u1) ... Setting up g++ (4:4.9.2-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up make (4.0-8.1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libdpkg-perl (1.17.27) ... Setting up dpkg-dev (1.17.27) ... Setting up build-essential (11.7) ... Setting up bwa (0.7.10-1) ... Setting up bzip2-doc (1.0.6-7) ... Setting up libcassie1 (1.0.1+dfsg-3+b1) ... Setting up cassiopee (1.0.1+dfsg-3+b1) ... Setting up cd-hit (4.6.1-2012-08-27-2) ... Setting up cdbfasta (0.99-20100722-1) ... Setting up cdbs (0.4.130+deb8u1) ... Setting up microbiomeutil-data (20101212+dfsg-1) ... Setting up chimeraslayer (20101212+dfsg-1) ... Setting up clearcut (1.0.9-1) ... Setting up clonalframe (1.2-3) ... Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up clustalx (2.1+lgpl-3) ... Setting up policykit-1 (0.105-15~deb8u2) ... Setting up colord-data (1.2.1-1) ... Setting up colord (1.2.1-1+b2) ... Setting up curl (7.38.0-4+deb8u11) ... Setting up cython (0.21.1-1) ... Setting up gettext (0.19.3-2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up debhelper (9.20150101+deb8u2) ... Setting up python3.4 (3.4.2-1) ... Setting up python3-minimal (3.4.2-2) ... Setting up libpython3-stdlib:amd64 (3.4.2-2) ... Setting up dialign (2.2.1-7) ... Setting up dialign-tx-data (1.0.2-7) ... Setting up dialign-tx (1.0.2-7) ... Setting up discosnp (1.2.5-1) ... Setting up dnaclust (3-2+b1) ... Setting up xml-core (0.13+nmu2) ... Setting up docutils-doc (0.12+dfsg-1) ... Setting up dssp (2.2.1-2+b1) ... Setting up libkpathsea6 (2014.20140926.35254-6) ... Setting up libptexenc1 (2014.20140926.35254-6) ... Setting up libjbig2dec0 (0.13-4~deb8u2) ... Setting up libgs9-common (9.06~dfsg-2+deb8u7) ... Setting up libpotrace0 (1.12-1+deb8u1) ... Setting up libsynctex1 (2014.20140926.35254-6) ... Setting up tex-common (5.03) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up libhpdf-2.2.1 (2.2.1-1.1) ... Setting up emboss-lib (6.6.0+dfsg-1) ... Setting up embassy-domainatrix (0.1.650-1) ... Setting up embassy-domalign (0.1.650-1) ... Setting up embassy-domsearch (1:0.1.650-1) ... Setting up emboss-data (6.6.0+dfsg-1) ... Setting up emboss (6.6.0+dfsg-1) ... Setting up exonerate (2.2.0-6) ... Setting up libfakeroot:amd64 (1.20.2-1) ... Setting up fakeroot (1.20.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up fastdnaml (1.2.2-10) ... Setting up fastjar (2:0.98-5) ... Setting up fastlink (4.1P-fix95-3) ... Setting up libcommons-math3-java (3.3-1) ... Setting up libjbzip2-java (0.9.1-3) ... Setting up libsam-java (1.113-1) ... Setting up fastqc (0.11.2+dfsg-3) ... Setting up libgtextutils0:amd64 (0.7-2) ... Setting up libgd-text-perl (0.86-9) ... Setting up libgd-graph-perl (1.48-2) ... Setting up libperlio-gzip-perl (0.18-3+b1) ... Setting up fastx-toolkit (0.0.14-1) ... Setting up jarwrapper (0.48+deb8u1) ... Setting up junit (3.8.2-8) ... Setting up libnb-org-openide-util-lookup-java (7.4+dfsg1-2) ... Setting up libnb-org-openide-util-java (7.4+dfsg1-2) ... Setting up libfreehep-util-java (2.0.2-5) ... Setting up libfreehep-graphics2d-java (2.1.1-4) ... Setting up libfreehep-io-java (2.0.2-4) ... Setting up libtablelayout-java (20090826-2) ... Setting up libitext5-java (5.5.3-2) ... Setting up libjam-java (0.0.r304-1) ... Setting up libjebl2-java (0.0.r22-1) ... Setting up filo (1.1+2011123001.1) ... Setting up python-pyrex (0.9.8.5-2.1) ... Setting up python-pysam (0.7.7-1) ... Setting up fitgcp (0.0.20130418-2) ... Setting up libtbb2 (4.2~20140122-5) ... Setting up flexbar (2.50-1) ... Setting up fonts-cabin (1.5-2) ... Setting up fonts-comfortaa (2.003-1) ... Setting up fonts-crosextra-caladea (20130214-1) ... Setting up fonts-crosextra-carlito (20130920-1) ... Setting up fonts-dejavu-extra (2.34-1) ... Setting up fonts-dejavu (2.34-1) ... Setting up fonts-ebgaramond (0.015+git20130628-3) ... Setting up fonts-ebgaramond-extra (0.015+git20130628-3) ... Setting up fonts-font-awesome (4.2.0~dfsg-1) ... Setting up fonts-freefont-otf (20120503-4) ... Setting up fonts-gfs-artemisia (1.1-5) ... Setting up fonts-gfs-complutum (1.1-6) ... Setting up fonts-gfs-didot (1.1-6) ... Setting up fonts-gfs-neohellenic (1.1-6) ... Setting up fonts-gfs-olga (1.1-5) ... Setting up fonts-gfs-solomos (1.1-5) ... Setting up fonts-inconsolata (001.010-5) ... Setting up fonts-junicode (0.7.8-2) ... Setting up fonts-linuxlibertine (5.3.0-2) ... Setting up fonts-lmodern (2.004.4-5) ... Setting up fonts-lobster (2.0-2) ... Setting up fonts-lobstertwo (2.0-2) ... Setting up fonts-oflb-asana-math (000.907-6) ... Setting up fonts-sil-gentium (20081126:1.02-13) ... Setting up fonts-sil-gentium-basic (1.1-7) ... Setting up fonts-texgyre (20140520-1) ... Setting up ttf-dejavu-core (2.34-1) ... Setting up ttf-dejavu-extra (2.34-1) ... Setting up ttf-dejavu (2.34-1) ... Setting up libgtkglext1 (1.2.0-3.2) ... Setting up gamgi (0.17.1-1) ... Setting up garlic (1.6-1.1) ... Setting up python-reportlab-accel:amd64 (3.1.8-3+deb8u1) ... Setting up python-reportlab (3.1.8-3+deb8u1) ... Setting up python-biopython (1.64+dfsg-5) ... Setting up bowtie (1.1.1-2) ... Setting up bowtie2 (2.2.4-1) ... Setting up seqan-apps (1.4.1+dfsg-2) ... Setting up gasic (0.0.r18-2) ... Setting up libbio-graphics-perl (2.39-2) ... Setting up libcgi-session-perl (4.48-1+deb8u1) ... Setting up libjson-perl (2.61-1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up liburi-perl (1.64-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up sqlite3 (3.8.7.1-1+deb8u2) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up libanyevent-perl (7.070-3) ... Setting up libanyevent-cachedns-perl (0.08-1) ... Setting up libcommon-sense-perl (3.73-2+b3) ... Setting up libanyevent-http-perl (2.21-1) ... Setting up libstring-approx-perl (3.27-1+b2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-simple-perl (2.20-1) ... Setting up gdpc (2.2.5-3) ... Setting up libsqlite0 (2.8.17-12) ... Setting up gentle (1.9+cvs20100605+dfsg1-3) ... Setting up gff2aplot (2.0-7) ... Setting up gff2ps (0.98d-4) ... Setting up libgfortran-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Setting up gfortran-4.9 (4.9.2-10+deb8u1) ... Setting up gfortran (4:4.9.2-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libglpk-java (1.0.37-1) ... Setting up glpk-utils (4.55-1) ... Setting up tophat (2.0.13+dfsg-1) ... Setting up giira (0.0.20140210-2) ... Setting up glam2 (1064-3) ... Setting up aglfn (1.7-3) ... Setting up gnuplot-tex (4.6.6-2) ... Setting up gnuplot-data (4.6.6-2) ... Setting up gnuplot-qt (4.6.6-2) ... update-alternatives: using /usr/bin/gnuplot4-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode update-alternatives: using /usr/bin/gnuplot4-qt to provide /usr/bin/gnuplot4 (gnuplot4) in auto mode Setting up gnuplot (4.6.6-2) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up graphviz (2.38.0-7) ... Setting up libgetopt-euclid-perl (0.4.5-1) ... Setting up libmath-random-mt-perl (1.16-1+b2) ... Setting up grinder (0.5.3-3) ... Setting up gstreamer1.0-plugins-base:amd64 (1.4.4-2+deb8u1) ... Setting up hmmer (3.1b1-3) ... Setting up libpvm3 (3.4.5-12.6) ... Setting up hmmer2 (2.3.2-8) ... Setting up idba (1.1.2-1) ... Setting up imagemagick-6.q16 (8:6.8.9.9-5+deb8u12) ... Setting up imagemagick (8:6.8.9.9-5+deb8u12) ... update-alternatives: using /usr/bin/compare-im6 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/animate-im6 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/convert-im6 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/composite-im6 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/conjure-im6 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/import-im6 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/identify-im6 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/stream-im6 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/display-im6 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/montage-im6 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/mogrify-im6 to provide /usr/bin/mogrify (mogrify) in auto mode Setting up infernal (1.1.1-2) ... Setting up libcommons-compress-java (1.9-1) ... Setting up libcommons-net1-java (1.4.1-5) ... Setting up ipig (0.0.r5-1) ... Setting up python-pexpect (3.2-1) ... Setting up python-simplegeneric (0.8.1-1) ... Setting up ipython (2.3.0-2) ... Setting up unzip (6.0-16+deb8u3) ... Setting up java-wrappers (0.1.28) ... Setting up libjmol-java (12.2.32+dfsg2-1) ... Setting up icedtea-netx-common (1.5.3-1) ... Setting up libcommons-io-java (2.4-2) ... Setting up libapache-mime4j-java (0.7.2-3) ... Setting up libcastor-core-java (1.3.2-3) ... Setting up libcastor-xml-java (1.3.2-3) ... Setting up libhttpcore-java (4.3.3-1) ... Setting up libhttpclient-java (4.3.5-2) ... Setting up libhttpmime-java (4.3.5-2) ... Setting up libjaba-client-java (0+dfsg-1) ... Setting up libgnuinet-java (1.1.2-2) ... Setting up libgnumail-java (1.1.2-9) ... Setting up libjswingreader-java (0.3-1) ... Setting up libmiglayout-java (4.2-1) ... Setting up libvamsas-client-java (0.2~git2011.10.17+1b42648-1) ... Setting up javascript-common (11) ... apache2_invoke: Enable configuration javascript-common invoke-rc.d: policy-rc.d denied execution of reload. Setting up libjellyfish-2.0-2 (2.1.4-1) ... Setting up jellyfish (2.1.4-1) ... Setting up jmol (12.2.32+dfsg2-1) ... Setting up kalign (1:2.03+20110620-2) ... Setting up libbcprov-java (1.49+dfsg-3+deb8u2) ... Setting up libbcpkix-java (1.49+dfsg-3+deb8u2) ... Setting up libbcmail-java (1.49+dfsg-3+deb8u2) ... Setting up libitext-java (2.1.7-9) ... Setting up kissplice (2.2.1-3) ... Setting up ksh (93u+20120801-1) ... update-alternatives: using /bin/ksh93 to provide /bin/ksh (ksh) in auto mode Setting up laptop-detect (0.13.7) ... Setting up last-align (490-1) ... Setting up liberror-perl (0.17-1.1) ... Setting up libipc-sharelite-perl (0.17-3+b2) ... Setting up libcache-cache-perl (1.07-2) ... Setting up libace-perl (1.92-3+b1) ... Setting up libai-fann-perl (0.10-2+b1) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up libalgorithm-merge-perl (0.08-2) ... Setting up libalgorithm-munkres-perl (0.08-2) ... Setting up libperl5.20 (5.20.2-3+deb8u11) ... Setting up libdevel-symdump-perl (2.12-1) ... Setting up libarchive-extract-perl (0.72-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up libsub-exporter-progressive-perl (0.001011-1) ... Setting up libdevel-globaldestruction-perl (0.13-1) ... Setting up libimport-into-perl (1.002004-1) ... Setting up librole-tiny-perl (1.003004-1) ... Setting up libstrictures-perl (1.005005-1) ... Setting up libmoo-perl (1.006001-1) ... Setting up libexporter-tiny-perl (0.038-2) ... Setting up libtype-tiny-perl (1.000004-1) ... Setting up libarray-compare-perl (2.11-1) ... Setting up libasprintf-dev:amd64 (0.19.3-2) ... Setting up libasync-interrupt-perl (1.20-1+b1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libb-hooks-op-check-perl (0.19-2+b1) ... Setting up libbambamc0 (0.0.50-1) ... Setting up liblexical-sealrequirehints-perl (0.007-1+b2) ... Setting up libbareword-filehandles-perl (0.003-1+b2) ... Setting up libbio-asn1-entrezgene-perl (1.700-1) ... Setting up libstaden-read1 (1.13.7-1) ... Setting up libbio-scf-perl (1.03-2+b1) ... Setting up libcarp-clan-perl (6.04-1) ... Setting up libbit-vector-perl (7.3-1+b2) ... Setting up libblas-dev (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbsd-resource-perl (1.2907-1+b2) ... Setting up libbz2-dev:amd64 (1.0.6-7+b3) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libclass-xsaccessor-perl (1.19-2+b4) ... Setting up libcofoja-java (1.1-r150-2) ... Setting up libcommons-jexl2-java (2.1.1-2) ... Setting up libconvert-binary-c-perl (0.76-3+b2) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libdate-calc-perl (6.3-2) ... Setting up libdate-calc-xs-perl (6.3-2) ... Setting up libdate-manip-perl (6.47-1) ... Setting up libdbd-pg-perl (3.4.2-1) ... Setting up libpadwalker-perl (1.98-1+b1) ... Setting up libdevel-caller-perl (2.06-1+b2) ... Setting up libdevel-lexalias-perl (0.05-1+b2) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libfile-chdir-perl (0.1008-1) ... Setting up libfile-copy-recursive-perl (0.38-1) ... Setting up libfile-desktopentry-perl (0.07-1) ... Setting up libfile-fcntllock-perl (0.22-1+b1) ... Setting up libfile-which-perl (1.09-1) ... Setting up libfile-homedir-perl (1.00-1) ... Setting up libfile-mimeinfo-perl (0.26-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up libg20 (0.72-5+b1) ... Setting up libsvg-perl (2.59-1) ... Setting up libgd-svg-perl (0.33-1) ... Setting up libgettextpo-dev:amd64 (0.19.3-2) ... Setting up libglib2.0-data (2.42.1-1) ... Setting up libgmp-dev:amd64 (2:6.0.0+dfsg-6) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-run-perl (0.92-1+deb8u1) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libgphoto2-l10n (2.5.4-1.1) ... Setting up libheap-perl (0.80-2) ... Setting up libgraph-perl (1:0.96-1.1) ... Setting up libgtk2.0-bin (2.24.25-3+deb8u2) ... Setting up libguard-perl (1.022-2+b1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhtml-tableextract-perl (2.11-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up x11proto-core-dev (7.0.26-1) ... Setting up libice-dev:amd64 (2:1.0.9-1+b1) ... Setting up libindirect-perl (0.33-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.3.1-12) ... Setting up libjpeg-dev (1:1.3.1-12) ... Setting up libjs-underscore (1.7.0~dfsg-1) ... Setting up libjs-sphinxdoc (1.2.3+dfsg-1) ... Setting up libjson-xs-perl (2.340-1+b2) ... Setting up liblapack-dev (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up liblog4cpp5 (1.0-4) ... Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2+b3) ... Setting up libmagickcore-6.q16-2-extra:amd64 (8:6.8.9.9-5+deb8u12) ... Setting up libsys-hostname-long-perl (1.4-3) ... Setting up libmail-sendmail-perl (0.79.16-1) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmath-derivative-perl (0.01-6) ... Setting up libmath-spline-perl (0.02-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up libmldbm-perl (2.05-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libmultidimensional-perl (0.010-1+b2) ... Setting up libtinfo-dev:amd64 (5.9+20140913-1+deb8u3) ... Setting up libncurses5-dev:amd64 (5.9+20140913-1+deb8u3) ... Setting up libncursesw5-dev:amd64 (5.9+20140913-1+deb8u3) ... Setting up libnetpbm10 (2:10.0-15.2) ... Setting up libole-storage-lite-perl (0.19-1) ... Setting up libsvm3 (3.12-1) ... Setting up libxerces-c3.1:amd64 (3.1.1-5.1+deb8u4) ... Setting up openms-common (1.11.1-5) ... Setting up libopenms1.11 (1.11.1-5) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpcre3-dev:amd64 (2:8.35-3.3+deb8u4) ... Setting up libperl4-corelibs-perl (0.003-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libpng12-dev:amd64 (1.2.50-2+deb8u3) ... Setting up libpod-coverage-perl (0.23-1) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libpostscript-perl (0.06-2) ... Setting up libpthread-stubs0-dev:amd64 (0.3-4) ... Setting up libpython-dev:amd64 (2.7.9-1) ... Setting up libpython-all-dev:amd64 (2.7.9-1) ... Setting up libreadline6-dev:amd64 (6.3-8+b3) ... Setting up libreadline-dev:amd64 (6.3-8+b3) ... Setting up libsane-extras-common (1.0.22.3) ... Setting up libsane-extras:amd64 (1.0.22.3) ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsm-dev:amd64 (2:1.2.2-1+b1) ... Setting up libsnp-sites1 (1.5.0-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libunicode-map-perl (0.112-11+b1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libsprng2 (2.0a-8) ... Setting up libsquizz (0.99b+dfsg-3) ... Setting up libsub-name-perl (0.12-1) ... Setting up libtree-dagnode-perl (1.22-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libtcmalloc-minimal4 (2.2.1-0.2) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtest-pod-perl (1.48-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libtie-ixhash-perl (1.23-1) ... Setting up libtype-tiny-xs-perl (0.010-1) ... Setting up libutempter0 (1.1.5-4) ... Creating utempter group... Setting up libvisual-0.4-plugins:amd64 (0.4.0.dfsg.1-7) ... Setting up libvte-common (1:0.28.2-5) ... Setting up libpango1.0-0:amd64 (1.36.8-3) ... Setting up libvte9 (1:0.28.2-5) ... Setting up libxau-dev:amd64 (1:1.0.8-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.1-1+b1) ... Setting up x11proto-input-dev (2.3.1-1) ... Setting up x11proto-kb-dev (1.0.6-2) ... Setting up xtrans-dev (1.3.4-1) ... Setting up libxcb1-dev:amd64 (1.10-3+b1) ... Setting up libx11-dev:amd64 (2:1.6.2-3+deb8u1) ... Setting up libx11-doc (2:1.6.2-3+deb8u1) ... Setting up libx11-protocol-perl (0.56-6) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libxml-libxslt-perl (1.92-1+b1) ... Setting up libxml-sax-writer-perl (0.54-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libxt-dev:amd64 (1:1.1.4-1+b1) ... Setting up libyaml-libyaml-perl (0.41-6) ... Setting up libyaml-perl (1.13-1) ... Setting up libyaml-tiny-perl (1.64-1) ... Setting up libzeep3.0 (3.0.2-1+b2) ... Setting up zip (3.0-8) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Setting up r-base-core (3.1.1-1+deb8u1) ... Creating config file /etc/R/Renviron with new version Setting up littler (0.2.1-1) ... Setting up lksctp-tools (1.0.16+dfsg-2) ... Setting up lmodern (2.004.4-5) ... Setting up swi-prolog-nox (6.6.6-5) ... update-alternatives: using /usr/bin/swipl to provide /usr/bin/prolog (prolog) in auto mode Setting up loki (2.4.7.4-5) ... Setting up genometools-common (1.5.3-2) ... Setting up libgenometools0 (1.5.3-2) ... Setting up ltrsift (1.0.2-1) ... Setting up macs (2.0.9.1-1) ... Setting up mafft (7.205-1) ... Setting up manpages-dev (3.74-1) ... Setting up mapsembler2 (2.1.6+dfsg-1) ... Setting up maq (0.7.1-5) ... Setting up maqview (0.2.5-6) ... Setting up massxpert-data (3.4.1-1) ... Setting up massxpert (3.4.1-1) ... Setting up melting (4.3.1+dfsg-1) ... Setting up nast-ier (20101212+dfsg-1) ... Setting up wigeon (20101212+dfsg-1) ... Setting up microbiomeutil (20101212+dfsg-1) ... Setting up minia (1.6088-1) ... Setting up mira-assembler (4.0.2-1+b1) ... Setting up mlv-smile (1.47-3) ... Setting up mothur (1.33.3+dfsg-2) ... Setting up mrbayes (3.2.3+dfsg-1) ... Setting up rsync (3.1.1-3+deb8u1) ... invoke-rc.d: policy-rc.d denied execution of restart. Setting up mrs (6.0.5+dfsg-1) ... Creating mrs-dba user... Setting up muscle (1:3.8.31-1) ... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up ncbi-epcr (2.3.12-1-2) ... Setting up ncbi-tools-bin (6.1.20120620-8) ... Setting up ncbi-tools-x11 (6.1.20120620-8) ... update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode Setting up ncoils (2002-4) ... Setting up netpbm (2:10.0-15.2) ... Setting up njplot (2.4-2+b1) ... Setting up topp (1.11.1-5) ... Setting up openms (1.11.1-5) ... Setting up paraclu (9-1) ... Setting up parsinsert (1.04-1) ... Setting up pdb2pqr (1.9.0+dfsg-1) ... Setting up perl-doc (5.20.2-3+deb8u11) ... Setting up perl-tk (1:804.032-3+b3) ... Setting up perm (0.4.0-1) ... Setting up phylip (1:3.696+dfsg-1) ... Setting up phyml (2:20120412-2) ... Setting up phyutility (2.7.3-1) ... Setting up python-tk (2.7.8-2+b1) ... Setting up plasmidomics (0.2.0-3) ... Setting up plink (1.07-3) ... Setting up poa (2.0+20060928-3) ... Setting up prank (0.0.140110-1) ... Setting up preview-latex-style (11.87-3+deb8u1) ... Setting up prime-phylo (1.0.11-2) ... Setting up primer3 (2.3.6-1) ... Setting up probabel (0.4.3-2) ... Setting up probalign (1.4-3) ... Setting up probcons (1.12-9) ... Setting up proda (1.0-8) ... Setting up prodigal (1:2.6.1-1) ... Setting up python-wxversion (3.0.1.1+dfsg-2) ... Setting up python-wxgtk3.0 (3.0.1.1+dfsg-2) ... update-alternatives: using /usr/lib/wx/python/wx3.0.pth to provide /usr/lib/wx/python/wx.pth (wx.pth) in auto mode Setting up python-yaml (3.11-2) ... Setting up pycorrfit (0.8.3-2) ... Setting up python-pmw (1.3.2-6) ... Setting up pymol (1.7.2.1-1) ... Setting up sphinx-common (1.2.3+dfsg-1) ... Setting up pyqi (0.3.2+dfsg-1) ... Setting up python-pyfits (1:3.3-2+b1) ... Setting up python-multipletau (0.1.4-1) ... Setting up pyscanfcs (0.2.2-2) ... Setting up python-all (2.7.9-1) ... Setting up python2.7-dev (2.7.9-2+deb8u1) ... Setting up python-dev (2.7.9-1) ... Setting up python-all-dev (2.7.9-1) ... Setting up python-cogent (1.5.3-2) ... Setting up python-h5py (2.2.1-1.1+b1) ... Setting up python-biom-format (2.1+dfsg-1) ... Setting up python-biopython-doc (1.64+dfsg-5) ... Setting up python-cairo (1.8.8-1+b2) ... Setting up python-chardet (2.3.0-1) ... Setting up python-crypto (2.6.1-5+deb8u1) ... Setting up python-roman (2.0.0-1) ... Setting up python-egenix-mxtools (3.2.8-1) ... Setting up python-egenix-mxdatetime (3.2.8-1) ... Setting up python-gobject-2 (2.28.6-12+b1) ... Setting up python-gtk2 (2.24.0-4) ... Setting up python-glade2 (2.24.0-4) ... Setting up python-gmpy (1.15-1) ... Setting up python-pil:amd64 (2.6.1-2+deb8u3) ... Setting up python-imaging (2.6.1-2+deb8u3) ... Setting up python-markupsafe (0.23-1+b1) ... Setting up python-jinja2 (2.7.3-1) ... Setting up python-lxml (3.4.0-1) ... Setting up python-mako (1.0.0+dfsg-0.1) ... Setting up python-mpmath (0.19-1) ... Setting up python-mysqldb (1.2.3-2.1) ... Setting up python-pyglet (1.1.4.dfsg-2) ... Setting up python-pygments (2.0.1+dfsg-1.1+deb8u1) ... Setting up python-pysqlite2 (2.6.3-3) ... Setting up python-qcli (0.1.0-1) ... Setting up python-renderpm:amd64 (3.1.8-3+deb8u1) ... Setting up python-sqlalchemy (0.9.8+dfsg-0.1) ... Setting up python-sqlalchemy-ext (0.9.8+dfsg-0.1) ... Setting up python-sympy (0.7.5-3) ... Setting up qiime-data (1.8.0+dfsg-4) ... Setting up r-base-dev (3.1.1-1+deb8u1) ... Setting up r-cran-dbi (0.3.1-1) ... Setting up r-cran-rsqlite (0.11.4-3) ... Setting up r-bioc-biocgenerics (0.10.0-1) ... Setting up r-bioc-biobase (2.24.0-1) ... Setting up r-bioc-iranges (1.22.10-1) ... Setting up r-bioc-genomeinfodb (1.0.2-2) ... Setting up r-bioc-annotationdbi (1.26.1-1) ... Setting up r-cran-codetools (0.2-9-1) ... Setting up r-cran-iterators (1.0.7-1) ... Setting up r-cran-foreach (1.4.2-1) ... Setting up r-cran-checkmate (1.5.0-1) ... Setting up r-cran-bbmisc (1.7-1) ... Setting up r-cran-brew (1.0-6-1) ... Setting up r-cran-digest (0.6.4-1) ... Setting up r-cran-pkgkitten (0.1.2-1) ... Setting up r-cran-rcpp (0.11.3-1) ... Setting up r-cran-plyr (1.8.1-2) ... Setting up r-cran-stringr (0.6.2-2) ... Setting up r-cran-base64enc (0.1-2-1) ... Setting up r-cran-sendmailr (1.2-1-1) ... Setting up r-cran-fail (1.2-1) ... Setting up r-cran-batchjobs (1.4-1) ... Setting up r-bioc-biocparallel (0.6.1-1) ... Setting up r-cran-xml (3.98-1.1-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-cran-rcurl (1.95-4.3-1+deb8u1) ... Setting up r-bioc-biomart (2.20.0-1) ... Setting up r-bioc-xvector (0.4.0-1) ... Setting up r-bioc-biostrings (2.32.1-1) ... Setting up r-cran-dichromat (2.0.0-3) ... Setting up r-cran-foreign (0.8.61-1) ... Setting up r-cran-chron (2.3-45-1) ... Setting up r-cran-lattice (0.20-29-1) ... Setting up r-cran-cluster (1.15.3-1) ... Setting up r-cran-survival (2.37-7-1) ... Setting up r-cran-formula (1.1-2-1) ... Setting up r-cran-rpart (4.1-8-1) ... Setting up r-cran-rcolorbrewer (1.0-5-2) ... Setting up r-cran-latticeextra (0.6-26-1) ... Setting up r-cran-hmisc (3.14-5-1) ... Setting up r-cran-nnet (7.3-8-1) ... Setting up r-cran-colorspace (1.2-4-1) ... Setting up r-cran-munsell (0.4.2-1) ... Setting up r-cran-labeling (0.3-1) ... Setting up r-cran-scales (0.2.4-1) ... Setting up r-bioc-genomicranges (1.16.4-2) ... Setting up r-bioc-rsamtools (1.16.1-2) ... Setting up r-bioc-bsgenome (1.32.0-1) ... Setting up r-bioc-genomicalignments (1.0.6-1) ... Setting up r-bioc-rtracklayer (1.24.2-1) ... Setting up r-bioc-genomicfeatures (1.16.3-1) ... Setting up r-bioc-variantannotation (1.10.5-1) ... Setting up r-bioc-biovizbase (1.12.3-1) ... Setting up r-cran-reshape2 (1.4-1) ... Setting up r-cran-gtable (0.1.2-1.1) ... Setting up r-cran-mass (7.3-34-1) ... Setting up r-cran-proto (0.3-10-1) ... Setting up r-cran-ggplot2 (1.0.0-1) ... Setting up r-cran-fastcluster (1.1.13-1) ... Setting up r-cran-r.methodss3 (1.6.1-1) ... Setting up r-cran-matrixstats (0.10.3-1) ... Setting up r-bioc-gviz (1.8.4-1) ... Setting up r-bioc-cummerbund (2.6.1-1) ... Setting up r-bioc-hilbertvis (1.24.0-1) ... Setting up r-cran-hwriter (1.3.2-1) ... Setting up r-bioc-shortread (1.22.0-1) ... Setting up r-cran-abind (1.4-0-2) ... Setting up r-cran-nlme (3.1.117-1) ... Setting up r-cran-ape (3.1-4-1) ... Setting up r-cran-boot (1.3-13-1) ... Setting up r-cran-class (7.3-11-1) ... Setting up r-cran-multicore (0.2-1) ... Setting up r-cran-domc (1.3.3-1) ... Setting up r-cran-doparallel (1.0.8-1) ... Setting up r-cran-evaluate (0.5.5-1) ... Setting up r-cran-g.data (2.4-1) ... Setting up r-cran-genabel.data (1.0.0-1) ... Setting up r-cran-genabel (1.8-0-1) ... Setting up r-cran-getopt (1.20.0-1) ... Setting up r-cran-kernsmooth (2.23-13-1) ... Setting up r-cran-maps (2.3-7-1) ... Setting up r-cran-mapproj (1.2-2-1) ... Setting up r-cran-matrix (1.1-4-1) ... Setting up r-cran-mgcv (1.8-3-1) ... Setting up r-cran-optparse (1.2.0-1) ... Setting up r-cran-permute (0.8-3-1) ... Setting up r-cran-qtl (1.33-7-1) ... Setting up r-cran-sp (1:1.0-15-1) ... Setting up r-cran-spatial (7.3-8-1) ... Setting up tk8.6 (8.6.2-1) ... Setting up tcl8.6 (8.6.2+dfsg-2) ... Setting up tcl (8.6.0+8) ... Setting up tk (8.6.0+8) ... Setting up tk-table (2.10-2) ... Setting up r-cran-tcltk2 (1.2-10-1) ... Setting up r-cran-testthat (0.9.1-1) ... Setting up r-cran-vegan (2.0-10-1) ... Setting up r-doc-html (3.1.1-1+deb8u1) ... Setting up r-other-bio3d (1.1-5-1) ... Setting up r-other-mott-happy.hbrem (2.4-1) ... Setting up r-recommended (3.1.1-1+deb8u1) ... Setting up rasmol (2.7.5.2-2) ... update-alternatives: using /usr/bin/rasmol-gtk to provide /usr/bin/rasmol (rasmol) in auto mode Setting up raxml (8.1.1-3) ... Setting up readseq (1-11) ... Setting up relion-bin (1.3+dfsg-2) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rnahybrid (2.1.1-2) ... Setting up rtax (0.984-2) ... Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up saint (2.4.0+dfsg-1) ... Setting up samtools (0.1.19-1) ... Setting up update-inetd (4.43) ... Setting up sane-utils (1.0.24-8+deb8u2) ... Adding saned group and user... Adding user saned to group scanner invoke-rc.d: policy-rc.d denied execution of start. Setting up seaview (1:4.5.3.1-2) ... Setting up seqtk (1.0-1) ... Setting up sibsim4 (0.20-2) ... Setting up sigma-align (1.1.3-3) ... Setting up sim4 (0.0.20121010-1) ... Setting up smalt (0.7.6-4) ... Setting up snp-sites (1.5.0-1) ... Setting up soapdenovo (1.05-2) ... Setting up soapdenovo2 (240+dfsg-2) ... Setting up sphinx-doc (1.2.3+dfsg-1) ... Setting up squizz (0.99b+dfsg-3) ... Setting up sra-toolkit-libs0 (2.3.5-2+dfsg-1) ... Setting up sra-toolkit (2.3.5-2+dfsg-1) ... Setting up ssake (3.8.2-1) ... Setting up ssl-cert (1.0.35) ... Setting up staden-common (2.0.0+b10-1.1) ... Setting up staden-io-lib-utils (1.13.7-1) ... Setting up tklib (0.6-1+deb8u1) ... Setting up staden (2.0.0+b10-1.1) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tabix (1.1-1) ... Setting up tcllib (1.16-dfsg-2) ... Setting up tcpd (7.6.q-25) ... Setting up tex-gyre (20140520-1) ... Setting up ttf-adf-universalis (0.20090423-2) ... Setting up ttf-adf-gillius (0.20090423-2) ... Setting up fonts-stix (1.1.1-1) ... Setting up ttf-adf-accanthis (0.20090423-2) ... Setting up theseus (3.0.0-1) ... Setting up tigr-glimmer (3.02-3) ... Setting up tm-align (20140601+dfsg-1) ... Setting up transtermhp (2.09-2) ... Setting up tree-puzzle (5.2-7+b1) ... Setting up tree-puzzle-doc (5.2-7) ... Setting up treeviewx (0.5.1+20100823-3) ... Setting up uc-echo (1.12-7) ... Setting up velvet (1.2.10+dfsg1-1) ... Setting up velvetoptimiser (2.2.5-2) ... Setting up xbitmaps (1.1.1-2) ... Setting up xterm (312-2) ... update-alternatives: using /usr/bin/xterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode update-alternatives: using /usr/bin/lxterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up x11-utils (7.7+2) ... Setting up x11-xserver-utils (7.7+3+b1) ... Setting up xauth (1:1.0.9-1) ... Setting up xdg-user-dirs (0.15-2) ... Setting up xsltproc (1.1.28-2+deb8u3) ... Setting up zalign (0.9.1-1+b1) ... Setting up acedb-other (4.9.39+dfsg.01-5) ... Setting up acedb-other-belvu (4.9.39+dfsg.01-5) ... Setting up acedb-other-dotter (4.9.39+dfsg.01-5) ... Setting up ampliconnoise (1.29-2) ... Setting up autodock-vina (1.1.2-3+b1) ... Setting up python-gdata (2.0.18+dfsg1-2) ... Setting up bauble (0.9.7-2) ... Setting up concavity (0.1-2) ... Setting up conservation-code (20110309.0-3) ... Setting up critterding (1.0-beta12.1-1.2) ... Setting up disulfinder-data (1.2.11-4) ... Setting up disulfinder (1.2.11-4) ... Setting up edtsurf (0.2009-3) ... Setting up fasttree (2.1.7-2) ... Setting up libffindex0 (0.9.9.3-2) ... Setting up ffindex (0.9.9.3-2) ... Setting up freecontact (1.0.21-3+b1) ... Setting up genometools (1.5.3-2) ... Setting up gromacs-data (5.0.2-1) ... Setting up gromacs (5.0.2-1) ... Setting up hhsuite-data (2.0.16-5) ... Setting up hhsuite (2.0.16-5) ... Setting up libconfig-inifiles-perl (2.83-3) ... Setting up libev-perl (4.18-1) ... Setting up libhwloc-plugins (1.10.0-3) ... Setting up librg-exception-perl (1.0.3-1) ... Setting up librg-reprof-bundle-perl (1.0.1-1) ... Setting up profphd-utils (1.0.10-1) ... Setting up librg-utils-perl (1.0.43-2) ... Setting up libset-scalar-perl (1.29-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up openmpi-common (1.6.5-9.1+deb8u1) ... Setting up openmpi-bin (1.6.5-9.1+deb8u1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-bin (1.0.2+nmu2) ... Setting up ncbi-seg (0.0.20000620-2) ... Setting up profnet-norsnet (1.0.22-2) ... Setting up norsnet (1.0.17-1) ... Setting up norsp (1.0.6-1) ... Setting up populations (1.2.33+svn0120106-2.1) ... Setting up pp-popularity-contest (1.0.6-2+b1) ... Setting up predictnls (1.0.20-1) ... Setting up profnet-bval (1.0.22-2) ... Setting up profbval (1.0.22-1) ... Setting up profnet-isis (1.0.22-2) ... Setting up profisis (1.0.11-1) ... Setting up profnet-prof (1.0.22-2) ... Setting up profphd-net (1.0.22-2) ... Setting up profphd (1.0.40-1) ... Setting up proftmb (1.1.12-2) ... Setting up reprof (1.0.1-1) ... Setting up profnet-chop (1.0.22-2) ... Setting up profnet-con (1.0.22-2) ... Setting up profnet-md (1.0.22-2) ... Setting up profnet-snapfun (1.0.22-2) ... Setting up pvm (3.4.5-12.6) ... update-alternatives: using /usr/bin/rsh to provide /usr/lib/pvm3/bin/rsh (pvm-rsh) in auto mode Setting up pynast (1.2.2-1) ... Setting up python-mpi4py (1.3.1+hg20131106-2) ... Setting up ray (2.3.1-1) ... Setting up snap (2013-11-29-1) ... Setting up vcftools (0.1.12+dfsg-1) ... Processing triggers for tex-common (5.03) ... Setting up swi-prolog-x (6.6.6-5) ... Setting up swi-prolog (6.6.6-5) ... Setting up logol-bin (1.7.0-2) ... Processing triggers for sgml-base (1.26+nmu4) ... Setting up docutils-common (0.12+dfsg-1) ... Processing triggers for menu (2.1.47) ... Setting up blends-common (0.6.92.2) ... Setting up med-config (2.0) ... Adding group `med' (GID 160) ... Done. Setting up science-config (1.4) ... Adding group `science' (GID 161) ... Done. Processing triggers for sgml-base (1.26+nmu4) ... Setting up python-docutils (0.12+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.2.3+dfsg-1) ... Setting up tasksel (3.31+deb8u1) ... Setting up libgtk-3-bin (3.14.5-1+deb8u1) ... Setting up adwaita-icon-theme (3.14.0-2) ... Setting up libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Setting up libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Setting up openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode update-binfmts: warning: found manually created entry for jar in /proc/sys/fs/binfmt_misc; leaving it alone Setting up default-jre-headless (2:1.7-52) ... Setting up openjdk-7-jre:amd64 (7u181-2.6.14-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (2:1.7-52) ... Setting up libbytecode-java (0.92.svn.20090106-1.1) ... Setting up libbiojava1.7-java (1:1.7.1-5) ... Setting up libbiojava-java (1:1.7.1-5) ... Setting up alien-hunter (1.7-3) ... Setting up ant (1.9.4-3) ... Setting up ant-optional (1.9.4-3) ... Setting up ant-contrib (1.0~b3+svn177-6) ... Setting up junit4 (4.11-3) ... Setting up libmsv-java (2009.1+dfsg1-4) ... Setting up libdom4j-java (1.6.1+dfsg.3-2) ... Setting up libsaxonb-java (9.1.0.8+dfsg-1) ... Setting up biomaj (1.2.3-4) ... Setting up python3 (3.4.2-2) ... Setting up dh-python (1.20141111-2) ... Setting up libgs9 (9.06~dfsg-2+deb8u7) ... Setting up texlive-binaries (2014.20140926.35254-6) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up ghostscript (9.06~dfsg-2+deb8u7) ... Setting up dvipng (1.14-2+b1) ... Setting up python3-pkg-resources (5.5.1-1) ... Setting up python3-nose (1.3.4-1) ... Setting up fastaq (1.5.0-1) ... Setting up libfreehep-swing-java (2.0.3-3) ... Setting up libfreehep-export-java (2.1.1-2) ... Setting up libfreehep-graphicsio-java (2.1.1-3) ... Setting up javahelp2 (2.0.05.ds1-7) ... Setting up libjas-plotter-java (2.2.6+dfsg1-2) ... Setting up libfreehep-graphicsio-tests-java (2.1.1+dfsg1-3) ... Setting up libfreehep-graphicsio-emf-java (2.1.1-emfplus+dfsg1-2) ... Setting up libfreehep-graphicsio-pdf-java (2.1.1+dfsg-1) ... Setting up libfreehep-graphicsio-ps-java (2.1.1-1) ... Setting up libfreehep-xml-java (2.1.2+dfsg1-3) ... Setting up libfreehep-graphicsio-svg-java (2.1.1-3) ... Setting up libfreehep-graphicsio-swf-java (2.1.1+dfsg-1) ... Setting up figtree (1.4-2) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libwww-perl (6.08-1) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libvm-ec2-perl (1.28-1) ... Setting up gbrowse (2.54+dfsg-3) ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: policy-rc.d denied execution of reload. Setting up jmol-applet (12.2.32+dfsg2-1) ... Setting up openjdk-7-jdk:amd64 (7u181-2.6.14-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode Setting up jalview (2.7.dfsg-4) ... Setting up king (2.21.120420+dfsg-1) ... Setting up libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... apache2_invoke: Enable module perl invoke-rc.d: policy-rc.d denied execution of restart. Setting up libapache-dbi-perl (1.12-1) ... Setting up libapache2-reload-perl (0.12-3) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libgo-perl (0.15-1) ... Setting up libnet-dbus-perl (1.0.0-2+b2) ... Setting up libsoap-lite-perl (1.11-1) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-dom-perl (1.44-1) ... Setting up libxml-checker-perl (0.13-6) ... Setting up libxml-dom-xpath-perl (0.14-1) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up metastudent (1.0.11-2) ... Setting up mipe (1.1-4) ... Setting up perlprimer (1.1.21-2) ... Setting up picard-tools (1.113-1) ... Setting up texlive-base (2014.20141024-2+deb8u1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Setting up proalign (0.603-1) ... Setting up ps2eps (1.68+binaryfree-1) ... Setting up raster3d (3.0-3-1) ... Setting up trimmomatic (0.32+dfsg-4) ... Setting up med-tasks (2.0) ... Setting up med-bio (2.0) ... Setting up neobio (0.0.20030929-1.1) ... Setting up predictprotein (1.1.06-1) ... Setting up qiime (1.8.0+dfsg-4) ... Setting up science-tasks (1.4) ... Setting up science-biology (1.4) ... Setting up tasksel-data (3.31+deb8u1) ... Setting up libgtk-3-common (3.14.5-1+deb8u1) ... Setting up libgtk-3-0:amd64 (3.14.5-1+deb8u1) ... Setting up libcanberra-gtk3-0:amd64 (0.30-2.1) ... Setting up ca-certificates-java (20140324) ... Adding debian:ssl-cert-snakeoil.pem Adding debian:spi-cacert-2008.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:WoSign_China.pem Adding debian:WoSign.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H6.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:StartCom_Certification_Authority_2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:S-TRUST_Universal_Root_CA.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:PSCProcert.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:Juur-SK.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:IGC_A.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:ComSign_CA.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Certigna.pem Adding debian:Certification_Authority_of_WoSign_G2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CNNIC_ROOT.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_WoSign_ECC_Root.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AddTrust_External_Root.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:ACEDICOM_Root.pem Adding debian:ACCVRAIZ1.pem done. Setting up libcanberra-gtk3-module:amd64 (0.30-2.1) ... Setting up notification-daemon (0.7.6-2) ... Processing triggers for tex-common (5.03) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-generic-recommended (2014.20141024-2+deb8u1) ... Setting up texlive-font-utils (2014.20141024-1) ... Setting up texlive-fonts-extra (2014.20141024-1) ... Setting up texlive-fonts-extra-doc (2014.20141024-1) ... Setting up texlive-fonts-recommended (2014.20141024-2+deb8u1) ... Setting up texlive-fonts-recommended-doc (2014.20141024-2+deb8u1) ... Setting up texlive-latex-base-doc (2014.20141024-2+deb8u1) ... Setting up texlive-latex-extra-doc (2014.20141024-1) ... Setting up texlive-latex-recommended-doc (2014.20141024-2+deb8u1) ... Setting up texlive-pictures-doc (2014.20141024-2+deb8u1) ... Setting up texlive-pstricks-doc (2014.20141024-1) ... Setting up texlive-latex-base (2014.20141024-2+deb8u1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-extra-utils (2014.20141024-1) ... Setting up texlive-math-extra (2014.20141024-1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-math-extra.cnf. This may take some time... done. Setting up tipa (2:1.3-20) ... Setting up texlive-latex-recommended (2014.20141024-2+deb8u1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-pictures (2014.20141024-2+deb8u1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-pstricks (2014.20141024-1) ... Setting up texlive-latex-extra (2014.20141024-1) ... Setting up prerex (6.5.3-1) ... Setting up vprerex (6.5.3-1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up prosper (1.00.4+cvs.2007.05.01-4) ... Running mktexlsr. This may take some time... done. Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d.... done. done. Processing triggers for dictionaries-common (1.23.17) ... aspell-autobuildhash: processing: en [en-common]. aspell-autobuildhash: processing: en [en-variant_0]. aspell-autobuildhash: processing: en [en-variant_1]. aspell-autobuildhash: processing: en [en-variant_2]. aspell-autobuildhash: processing: en [en-w_accents-only]. aspell-autobuildhash: processing: en [en-wo_accents-only]. aspell-autobuildhash: processing: en [en_CA-variant_0]. aspell-autobuildhash: processing: en [en_CA-variant_1]. aspell-autobuildhash: processing: en [en_CA-w_accents-only]. aspell-autobuildhash: processing: en [en_CA-wo_accents-only]. aspell-autobuildhash: processing: en [en_GB-ise-w_accents-only]. aspell-autobuildhash: processing: en [en_GB-ise-wo_accents-only]. aspell-autobuildhash: processing: en [en_GB-ize-w_accents-only]. aspell-autobuildhash: processing: en [en_GB-ize-wo_accents-only]. aspell-autobuildhash: processing: en [en_GB-variant_0]. aspell-autobuildhash: processing: en [en_GB-variant_1]. aspell-autobuildhash: processing: en [en_US-w_accents-only]. aspell-autobuildhash: processing: en [en_US-wo_accents-only]. Processing triggers for python-support (1.0.15) ... Processing triggers for dbus (1.8.22-0+deb8u1) ... Processing triggers for menu (2.1.47) ... 6m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-y', 'install', 'science-biology'] 6m19.0s INFO: Running scripts post_install 6m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_install_exceptions'] 6m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_install_exceptions'] 6m19.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 6m25.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 6m25.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpz80oq68m to stretch 6m25.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 6m25.5s INFO: Running scripts pre_distupgrade 6m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 6m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 6m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_exceptions'] 6m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_exceptions'] 6m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 6m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 6m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_zz_database-server'] 6m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_zz_database-server'] 6m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 6m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 6m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', 'update'] 6m27.9s DUMP: Ign http://deb.debian.org stretch InRelease Get:1 http://deb.debian.org stretch Release.gpg [3177 B] Get:2 http://deb.debian.org stretch Release [118 kB] Get:3 http://deb.debian.org stretch/main amd64 Packages [7080 kB] Get:4 http://deb.debian.org stretch/main Translation-en [5377 kB] Fetched 12.6 MB in 1s (8941 kB/s) Reading package lists... W: There is no public key available for the following key IDs: 648ACFD622F3D138 NO_PUBKEY 0E98404D386FA1D9 6m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', 'update'] 6m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-y', 'upgrade'] 9m52.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: adwaita-icon-theme fonts-texgyre ifupdown iproute2 isc-dhcp-client isc-dhcp-common libatm1 libcommons-io-java libdirectfb-1.2-9 libdns-export100 libelfg0 libgnuinet-java libgnumail-java libheap-perl libirs-export91 libisc-export95 libisccfg-export90 libxtables10 metastudent-data-2 python3-nose r-cran-evaluate r-cran-testthat Use 'apt-get autoremove' to remove them. The following packages have been kept back: acedb-other-belvu acedb-other-dotter adun.app adwaita-icon-theme aevol altree amap-align ampliconnoise anfo apache2 apache2-bin apache2-data apache2-utils apt aspell at-spi2-core autodock autodock-vina autogrid ballview bamtools bc bedtools biomaj bioperl-run blast2 bowtie bowtie2 build-essential cassiopee cd-hit cdbfasta circos clonalframe clustalo clustalw clustalx colord cpp critterding curl dbus debhelper default-jre default-jre-headless discosnp disulfinder dnaclust dssp dvipng edtsurf emboss emboss-data emboss-lib fastqc fastx-toolkit ffindex figtree file filo findutils flexbar fonts-lmodern freecontact g++ gawk gbrowse gcc gentle gfortran ghostscript glib-networking glib-networking-common glib-networking-services glpk-utils gnupg gnuplot-data gnuplot-qt gnustep-back-common gnustep-gui-runtime graphviz gromacs gromacs-data gstreamer1.0-plugins-base hhsuite hhsuite-data hmmer idba ifupdown imagemagick imagemagick-6.q16 imagemagick-common init init-system-helpers initscripts ipig iproute2 ipython isc-dhcp-client isc-dhcp-common jellyfish jmol kissplice last-align libace-perl libai-fann-perl libalgorithm-diff-xs-perl libanfo0 libanyevent-perl libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libarchive13 libaspell15 libasprintf-dev libasync-interrupt-perl libatk-bridge2.0-0 libatk-wrapper-java-jni libatomic1 libatspi2.0-0 libavahi-client3 libb-hooks-op-check-perl libball1.4 libballview1.4 libbareword-filehandles-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libcairo2 libcilkrts5 libclass-c3-xs-perl libclass-xsaccessor-perl libclone-perl libcloog-isl4 libcofoja-java libcommon-sense-perl libconvert-binary-c-perl libcpan-meta-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libdate-calc-perl libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-lexalias-perl libdjvulibre21 libev-perl libfcgi-perl libffindex0 libfile-basedir-perl libfile-fcntllock-perl libfltk-images1.3 libfltk1.3 libfreetype6 libftgl2 libgcc1 libgd-perl libgd3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libgl1-mesa-dri libglpk-java libgmp-dev libgmp10 libgmpxx4ldbl libgnustep-base1.24 libgomp1 libgphoto2-6 libgs9 libgs9-common libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgtk-3-0 libgtk-3-bin libgtk2.0-0 libgtk2.0-bin libguard-perl libgvc6 libharfbuzz-icu0 libhpdf-2.2.1 libhsqldb-java libhtml-parser-perl libibverbs1 libindirect-perl libio-pty-perl libipc-sharelite-perl libitm1 libjellyfish-2.0-2 libjgoodies-forms-java libjmol-java libjs-sphinxdoc libjson-xs-perl libkpathsea6 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-allutils-perl liblist-moreutils-perl liblocale-gettext-perl liblsan0 libmagic1 libmath-random-mt-perl libmath-tamuanova-perl libmotif-common libmultidimensional-perl libncbi6 libnet-dbus-perl libnet-ssleay-perl libnetpbm10 libobjc4 libossp-uuid-perl libossp-uuid16 libpadwalker-perl libpam-systemd libparams-classify-perl libparams-util-perl libparams-validate-perl libpcre3 libpcre3-dev libperlio-gzip-perl libpod-readme-perl libpoppler-qt4-4 libpq5 libptexenc1 libpulse0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libqt4-network libqt4-opengl libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libqtwebkit4 libquadmath0 libreadline-dev librtmp1 libsane libsane-common libsasl2-2 libsasl2-modules libsqlite3-0 libstdc++6 libstring-approx-perl libsub-name-perl libsystemd0 libtamuanova-0.2 libtbb2 libtcmalloc-minimal4 libterm-readkey-perl libtext-charwidth-perl libtext-iconv-perl libtext-soundex-perl libtsan0 libtype-tiny-xs-perl libubsan0 libudev1 libunicode-map-perl libvibrant6b libvisual-0.4-plugins libwmf0.2-7 libxerces-c3.1 libxm4 libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libyaml-libyaml-perl littler lmodern logol-bin lynx lynx-cur mapsembler2 maq maqview massxpert massxpert-data med-bio med-config med-tasks menu minia mira-assembler mothur mrbayes mrs mummer mustang mysql-client ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncbi-tools-x11 netpbm notification-daemon openmpi-bin openmpi-common openssh-client openssl paraclu parsinsert pdb2pqr perl perl-base perl-doc perl-tk perm phyml picard-tools plink populations pp-popularity-contest prank preview-latex-style prime-phylo primer3 probabel probalign probcons procps proftmb prosper pycorrfit pymol pyqi pyscanfcs python python-all python-all-dev python-ball python-ballview python-biom-format python-dev python-h5py python-htseq python-lxml python-matplotlib python-matplotlib-data python-minimal python-mock python-mpi4py python-mysqldb python-pexpect python-pil python-pyfits python-pysam python-scipy python-sip python-sphinx python-sympy python-wxgtk3.0 python2.7 python2.7-dev python2.7-minimal python3 python3-minimal r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-hilbertvis r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-ape r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-boot r-cran-checkmate r-cran-chron r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-digest r-cran-domc r-cran-doparallel r-cran-evaluate r-cran-fail r-cran-foreach r-cran-foreign r-cran-formula r-cran-genabel r-cran-getopt r-cran-ggplot2 r-cran-gtable r-cran-hmisc r-cran-iterators r-cran-kernsmooth r-cran-lattice r-cran-latticeextra r-cran-mapproj r-cran-maps r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-nnet r-cran-optparse r-cran-pkgkitten r-cran-plyr r-cran-proto r-cran-qtl r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sp r-cran-spatial r-cran-stringr r-cran-survival r-cran-tcltk2 r-cran-testthat r-cran-vegan r-cran-xml r-recommended rate4site ray relion-bin ruby saint samtools sane-utils science-biology science-config science-tasks seaview seqan-apps soapdenovo2 sphinx-common sqlite3 sra-toolkit staden staden-common staden-io-lib-utils swi-prolog swi-prolog-nox swi-prolog-x systemd sysv-rc sysvinit-utils t-coffee tabix tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc theseus tigr-glimmer tophat transtermhp treeviewx tzdata uc-echo udev util-linux vcftools vprerex zalign The following packages will be upgraded: abacas acedb-other acl adduser alien-hunter ant ant-contrib ant-optional apbs aragorn arden aspell-en autopoint autotools-dev base-files base-passwd bash bauble binfmt-support binutils bioperl biosquid blends-common blt boxshade bsdmainutils bsdutils bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cdbs chimeraslayer circos-tools clearcut colord-data concavity conservation-code coreutils cython dash dconf-gsettings-backend dconf-service debconf debconf-i18n debian-archive-keyring debianutils dh-python dialign dialign-tx dialign-tx-data dictionaries-common diffutils disulfinder-data dmidecode dmsetup docutils-common docutils-doc dpkg dpkg-dev e2fslibs e2fsprogs embassy-domainatrix embassy-domalign embassy-domsearch exonerate fakeroot fastaq fastdnaml fastjar fastlink fasttree fitgcp fontconfig fontconfig-config fonts-circos-symbols fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-liberation fonts-lyx fonts-sil-gentium fonts-stix fonts-texgyre freeglut3 gamgi garlic gasic gdpc genometools genometools-common gettext gettext-base gff2aplot gff2ps giira glam2 gnuplot gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gui-common gpgv grep grinder groff-base gsettings-desktop-schemas gsfonts gzip hicolor-icon-theme hmmer2 hostname icedtea-netx-common infernal insserv intltool-debian iso-codes jarwrapper java-common javahelp2 jmol-applet junit4 kalign king krb5-locales ksh laptop-detect libacl1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-merge-perl libalgorithm-munkres-perl libanyevent-cachedns-perl libanyevent-http-perl libao-common libao4 libapache-mime4j-java libapache2-reload-perl libapr1 libargtable2-0 libarray-compare-perl libasound2 libasound2-data libasyncns0 libatk-wrapper-java libatk1.0-0 libatk1.0-data libatlas3-base libatm1 libattr1 libaudio2 libaudit-common libaudit1 libavahi-common-data libavahi-common3 libaxis-java libball1.4-data libbcmail-java libbcpkix-java libbcprov-java libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libblas-common libblas-dev libblas3 libblkid1 libbsd0 libbytecode-java libbz2-1.0 libbz2-dev libc-bin libc-dev-bin libc6 libc6-dev libcaca0 libcache-cache-perl libcairo-gobject2 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcap-ng0 libcap2 libcap2-bin libcarp-clan-perl libcastor-core-java libcastor-xml-java libcbf0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-c3-perl libclass-inspector-perl libclass-method-modifiers-perl libcneartree5 libcolord2 libcolorhug2 libcomerr2 libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-compress-java libcommons-httpclient-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-math3-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconfig-inifiles-perl libconvert-binhex-perl libcqrlib2 libcr0 libcroco3 libcryptsetup4 libcvector2 libdata-dumper-simple-perl libdata-optlist-perl libdata-stag-perl libdate-manip-perl libdatrie1 libdb5.3 libdconf1 libdebconfclient0 libdevel-globaldestruction-perl libdevel-symdump-perl libdevmapper1.02.1 libdirectfb-1.2-9 libdjvulibre-text libdom4j-java libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libelk0 libencode-locale-perl liberror-perl libexif12 libexpat1 libexpat1-dev libexporter-tiny-perl libfakeroot libfann2 libffi6 libfftw3-double3 libfftw3-single3 libfile-desktopentry-perl libfile-mimeinfo-perl libfile-which-perl libflac8 libflite1 libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreehep-export-java libfreehep-graphics2d-java libfreehep-graphicsio-emf-java libfreehep-graphicsio-java libfreehep-graphicsio-pdf-java libfreehep-graphicsio-ps-java libfreehep-graphicsio-svg-java libfreehep-graphicsio-swf-java libfreehep-graphicsio-tests-java libfreehep-io-java libfreehep-swing-java libfreehep-util-java libfreehep-xml-java libg20 libgcrypt20 libgdbm3 libgenometools0 libgetopt-euclid-perl libgetopt-simple-perl libgettextpo-dev libgettextpo0 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libglu1-mesa libgnumail-java libgo-perl libgpg-error0 libgphoto2-l10n libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgssapi-krb5-2 libgtk-3-common libgtk2.0-common libgtkglext1 libgudev-1.0-0 libgusb2 libgvpr2 libhamcrest-java libharfbuzz0b libheap-perl libhtml-format-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-message-perl libhttpclient-java libhttpcore-java libhttpmime-java libhwloc-plugins libhwloc5 libice-dev libice6 libidn11 libieee1284-3 libijs-0.35 libimport-into-perl libio-all-perl libio-socket-ssl-perl libio-stringy-perl libipc-run-perl libisorelax-java libitext-java libitext5-java libjam-java libjas-plotter-java libjaxen-java libjbig0 libjbig2dec0 libjcommon-java libjebl2-java libjets3t-java libjgoodies-common-java libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-underscore libjsch-java libjson-glib-1.0-0 libjson-glib-1.0-common libjson-perl libjswingreader-java libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 liblog4j1.2-java liblqr-1-0 libltdl7 liblua5.1-0 liblzma-dev liblzma5 liblzo2-2 libmail-java libmail-sendmail-perl libmailtools-perl libmaloc1 libmath-bezier-perl libmath-derivative-perl libmath-round-perl libmath-vec-perl libmiglayout-java libmime-tools-perl libmldbm-perl libmng1 libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmount1 libmpc3 libmpdec2 libmpfr4 libmsv-java libmysql-java libnb-org-openide-util-java libnb-org-openide-util-lookup-java libncurses5 libncurses5-dev libncursesw5 libncursesw5-dev libnet-http-perl libnet-smtp-ssl-perl libnotify4 libnspr4 libnss3 libnuma1 libole-storage-lite-perl liborc-0.4-0 liboro-java libp11-kit0 libpackage-constants-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpango1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl4-corelibs-perl libpipeline1 libpixman-1-0 libpod-latex-perl libpolkit-agent-1-0 libpolkit-backend-1-0 libpolkit-gobject-1-0 libpopt0 libpotrace0 libpth20 libpvm3 libreadonly-perl libregexp-common-perl librest-0.7-0 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl librole-tiny-perl librsvg2-2 librsvg2-common libsane-extras libsane-extras-common libsasl2-modules-db libsctp1 libsdl1.2debian libselinux1 libsemanage-common libsemanage1 libsepol1 libset-scalar-perl libsigsegv2 libslang2 libsm-dev libsm6 libsmartcols1 libsndfile1 libsnp-sites1 libsoap-lite-perl libsoftware-license-perl libsoup-gnome2.4-1 libsoup2.4-1 libsprng2 libsqlite0 libsquizz libss2 libssh2-1 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-progressive-perl libsvg-perl libsvm3 libsynctex1 libsys-hostname-long-perl libtablelayout-java libtasn1-6 libtcl8.5 libtcl8.6 libtdb1 libterm-ui-perl libtest-pod-perl libtext-format-perl libtext-wrapi18n-perl libthai-data libthai0 libtheora0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtinfo5 libtk8.5 libtk8.6 libtre5 libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libunistring0 libunwind8 liburi-perl libusb-0.1-4 libusb-1.0-0 libustr-1.0-1 libutempter0 libuuid1 libv4l-0 libv4lconvert0 libvisual-0.4-0 libvm-ec2-perl libvorbis0a libvorbisenc2 libvorbisfile3 libvte9 libwayland-client0 libwayland-cursor0 libwrap0 libwsdl4j-java libwww-perl libx11-6 libx11-data libx11-dev libx11-doc libx11-protocol-perl libx11-xcb1 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-dom-perl libxml-dom-xpath-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-xpath-perl libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-perl libyaml-tiny-perl libzzip-0-13 linux-libc-dev lksctp-tools login loki lsb-base ltrsift lua-filesystem lua-lpeg macs mafft make man-db manpages manpages-dev mawk melting metastudent metastudent-data metastudent-data-2 microbiomeutil microbiomeutil-data mime-support mipe mknfonts.tool mlv-smile mount mpi-default-bin multiarch-support muscle mysql-common nast-ier ncbi-seg ncoils ncurses-base ncurses-bin neobio netbase njplot norsnet norsp ocl-icd-libopencl1 passwd patch perlprimer phylip plasmidomics po-debconf poa policykit-1 poppler-data predictnls prerex proalign proda prodigal profbval profisis profnet-bval profnet-chop profnet-con profnet-isis profnet-md profnet-norsnet profnet-prof profnet-snapfun profphd-net profphd-utils ps2eps pvm pynast python-biopython python-biopython-doc python-cairo python-chardet python-cogent python-crypto python-dateutil python-decorator python-docutils python-egenix-mxdatetime python-egenix-mxtools python-glade2 python-gmpy python-gobject-2 python-gtk2 python-imaging python-jinja2 python-mako python-markupsafe python-mpmath python-multipletau python-nose python-numpy python-pkg-resources python-pyglet python-pygments python-pyparsing python-pyrex python-pysqlite2 python-qcli python-renderpm python-reportlab python-reportlab-accel python-roman python-six python-sqlalchemy python-sqlalchemy-ext python-tk python-tz python-wxversion python-yaml python3-nose python3-pkg-resources qtcore4-l10n r-cran-fastcluster r-cran-permute r-doc-html raster3d raxml readline-common readseq rename reprof rnahybrid rsync rtax rubygems-integration sed sensible-utils seqtk sgml-base shared-mime-info sibsim4 sigma-align sim4 smalt snap snp-sites soapdenovo sphinx-doc squizz ssake ssl-cert startpar systemd-sysv tar tasksel tasksel-data tcl tcl8.6 tcllib tcpd tk tk-table tk8.6 tk8.6-blt2.5 tklib tm-align tree-puzzle tree-puzzle-doc trimmomatic ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ucf unzip update-inetd velvet velvetoptimiser wigeon wise wise-data x11-common x11-utils x11-xserver-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev xauth xdg-user-dirs xdg-utils xkb-data xml-core xsltproc xterm xtrans-dev xz-utils zip zlib1g zlib1g-dev 765 upgraded, 0 newly installed, 0 to remove and 524 not upgraded. Need to get 578 MB of archives. After this operation, 398 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ stretch/main base-files amd64 9.9+deb9u13 [67.6 kB] Get:2 http://deb.debian.org/debian/ stretch/main libncursesw5-dev amd64 6.0+20161126-1+deb9u2 [200 kB] Get:3 http://deb.debian.org/debian/ stretch/main libncurses5-dev amd64 6.0+20161126-1+deb9u2 [175 kB] Get:4 http://deb.debian.org/debian/ stretch/main libtinfo-dev amd64 6.0+20161126-1+deb9u2 [79.2 kB] Get:5 http://deb.debian.org/debian/ stretch/main binutils amd64 2.28-5 [3770 kB] Get:6 http://deb.debian.org/debian/ stretch/main libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:7 http://deb.debian.org/debian/ stretch/main libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:8 http://deb.debian.org/debian/ stretch/main linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:9 http://deb.debian.org/debian/ stretch/main libtinfo5 amd64 6.0+20161126-1+deb9u2 [300 kB] Get:10 http://deb.debian.org/debian/ stretch/main libncursesw5 amd64 6.0+20161126-1+deb9u2 [115 kB] Get:11 http://deb.debian.org/debian/ stretch/main libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:12 http://deb.debian.org/debian/ stretch/main ncurses-bin amd64 6.0+20161126-1+deb9u2 [366 kB] Get:13 http://deb.debian.org/debian/ stretch/main zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:14 http://deb.debian.org/debian/ stretch/main zlib1g amd64 1:1.2.8.dfsg-5 [87.5 kB] Get:15 http://deb.debian.org/debian/ stretch/main libc6 amd64 2.24-11+deb9u4 [2694 kB] Get:16 http://deb.debian.org/debian/ stretch/main libc-bin amd64 2.24-11+deb9u4 [782 kB] Get:17 http://deb.debian.org/debian/ stretch/main sensible-utils all 0.0.9+deb9u1 [10.8 kB] Get:18 http://deb.debian.org/debian/ stretch/main debianutils amd64 4.8.1.1 [100 kB] Get:19 http://deb.debian.org/debian/ stretch/main bash amd64 4.4-5 [1427 kB] Get:20 http://deb.debian.org/debian/ stretch/main libbsd0 amd64 0.8.3-1 [83.0 kB] Get:21 http://deb.debian.org/debian/ stretch/main bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:22 http://deb.debian.org/debian/ stretch/main bsdutils amd64 1:2.29.2-1+deb9u1 [112 kB] Get:23 http://deb.debian.org/debian/ stretch/main coreutils amd64 8.26-3 [2870 kB] Get:24 http://deb.debian.org/debian/ stretch/main tar amd64 1.29b-1.1 [759 kB] Get:25 http://deb.debian.org/debian/ stretch/main liblzma-dev amd64 5.2.2-1.2+b1 [292 kB] Get:26 http://deb.debian.org/debian/ stretch/main liblzma5 amd64 5.2.2-1.2+b1 [234 kB] Get:27 http://deb.debian.org/debian/ stretch/main libbz2-dev amd64 1.0.6-8.1 [29.4 kB] Get:28 http://deb.debian.org/debian/ stretch/main bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:29 http://deb.debian.org/debian/ stretch/main libbz2-1.0 amd64 1.0.6-8.1 [43.5 kB] Get:30 http://deb.debian.org/debian/ stretch/main xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:31 http://deb.debian.org/debian/ stretch/main libdpkg-perl all 1.18.25 [1287 kB] Get:32 http://deb.debian.org/debian/ stretch/main dpkg amd64 1.18.25 [2115 kB] Get:33 http://deb.debian.org/debian/ stretch/main dpkg-dev all 1.18.25 [1595 kB] Get:34 http://deb.debian.org/debian/ stretch/main patch amd64 2.7.5-1+deb9u2 [112 kB] Get:35 http://deb.debian.org/debian/ stretch/main make amd64 4.1-9.1 [302 kB] Get:36 http://deb.debian.org/debian/ stretch/main dash amd64 0.5.8-2.4 [109 kB] Get:37 http://deb.debian.org/debian/ stretch/main diffutils amd64 1:3.5-3 [314 kB] Get:38 http://deb.debian.org/debian/ stretch/main e2fslibs amd64 1.43.4-2+deb9u1 [208 kB] Get:39 http://deb.debian.org/debian/ stretch/main e2fsprogs amd64 1.43.4-2+deb9u1 [947 kB] Get:40 http://deb.debian.org/debian/ stretch/main grep amd64 2.27-2 [382 kB] Get:41 http://deb.debian.org/debian/ stretch/main gzip amd64 1.6-5+b1 [114 kB] Get:42 http://deb.debian.org/debian/ stretch/main hostname amd64 3.18+b1 [14.9 kB] Get:43 http://deb.debian.org/debian/ stretch/main login amd64 1:4.4-4.1 [790 kB] Get:44 http://deb.debian.org/debian/ stretch/main libselinux1 amd64 2.6-3+b3 [101 kB] Get:45 http://deb.debian.org/debian/ stretch/main libsmartcols1 amd64 2.29.2-1+deb9u1 [126 kB] Get:46 http://deb.debian.org/debian/ stretch/main mount amd64 2.29.2-1+deb9u1 [189 kB] Get:47 http://deb.debian.org/debian/ stretch/main sed amd64 4.4-1 [280 kB] Get:48 http://deb.debian.org/debian/ stretch/main libdebconfclient0 amd64 0.227 [47.8 kB] Get:49 http://deb.debian.org/debian/ stretch/main base-passwd amd64 3.5.43 [57.7 kB] Get:50 http://deb.debian.org/debian/ stretch/main ncurses-base all 6.0+20161126-1+deb9u2 [238 kB] Get:51 http://deb.debian.org/debian/ stretch/main systemd-sysv amd64 232-25+deb9u12 [82.5 kB] Get:52 http://deb.debian.org/debian/ stretch/main libtext-wrapi18n-perl all 0.06-7.1 [8644 B] Get:53 http://deb.debian.org/debian/ stretch/main debconf-i18n all 1.5.61 [205 kB] Get:54 http://deb.debian.org/debian/ stretch/main debconf all 1.5.61 [159 kB] Get:55 http://deb.debian.org/debian/ stretch/main libaudit-common all 1:2.6.7-2 [18.1 kB] Get:56 http://deb.debian.org/debian/ stretch/main libcap-ng0 amd64 0.7.7-3+b1 [13.8 kB] Get:57 http://deb.debian.org/debian/ stretch/main libaudit1 amd64 1:2.6.7-2 [51.3 kB] Get:58 http://deb.debian.org/debian/ stretch/main libpam0g amd64 1.1.8-3.6 [125 kB] Get:59 http://deb.debian.org/debian/ stretch/main libpam-modules-bin amd64 1.1.8-3.6 [105 kB] Get:60 http://deb.debian.org/debian/ stretch/main libpam-modules amd64 1.1.8-3.6 [308 kB] Get:61 http://deb.debian.org/debian/ stretch/main tasksel-data all 3.39 [18.1 kB] Get:62 http://deb.debian.org/debian/ stretch/main tasksel all 3.39 [94.6 kB] Get:63 http://deb.debian.org/debian/ stretch/main mawk amd64 1.3.3-17+b3 [84.6 kB] Get:64 http://deb.debian.org/debian/ stretch/main groff-base amd64 1.22.3-9 [1160 kB] Get:65 http://deb.debian.org/debian/ stretch/main libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:66 http://deb.debian.org/debian/ stretch/main libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:67 http://deb.debian.org/debian/ stretch/main man-db amd64 2.7.6.1-2 [1044 kB] Get:68 http://deb.debian.org/debian/ stretch/main libexpat1-dev amd64 2.2.0-2+deb9u3 [134 kB] Get:69 http://deb.debian.org/debian/ stretch/main libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:70 http://deb.debian.org/debian/ stretch/main fonts-texgyre all 20160520-1 [8761 kB] Get:71 http://deb.debian.org/debian/ stretch/main ucf all 3.0036 [70.2 kB] Get:72 http://deb.debian.org/debian/ stretch/main fonts-dejavu-core all 2.37-1 [1068 kB] Get:73 http://deb.debian.org/debian/ stretch/main fonts-liberation all 1:1.07.4-2 [827 kB] Get:74 http://deb.debian.org/debian/ stretch/main fontconfig-config all 2.11.0-6.7 [271 kB] Get:75 http://deb.debian.org/debian/ stretch/main libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:76 http://deb.debian.org/debian/ stretch/main fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:77 http://deb.debian.org/debian/ stretch/main libx11-doc all 2:1.6.4-3+deb9u1 [2201 kB] Get:78 http://deb.debian.org/debian/ stretch/main libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:79 http://deb.debian.org/debian/ stretch/main xkb-data all 2.19-1+deb9u1 [650 kB] Get:80 http://deb.debian.org/debian/ stretch/main libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:81 http://deb.debian.org/debian/ stretch/main libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:82 http://deb.debian.org/debian/ stretch/main x11proto-core-dev all 7.0.31-1 [728 kB] Get:83 http://deb.debian.org/debian/ stretch/main libxcb1-dev amd64 1.12-1 [169 kB] Get:84 http://deb.debian.org/debian/ stretch/main libxcb1 amd64 1.12-1 [133 kB] Get:85 http://deb.debian.org/debian/ stretch/main libx11-dev amd64 2:1.6.4-3+deb9u1 [815 kB] Get:86 http://deb.debian.org/debian/ stretch/main libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:87 http://deb.debian.org/debian/ stretch/main x11proto-input-dev all 2.3.2-1 [158 kB] Get:88 http://deb.debian.org/debian/ stretch/main x11proto-kb-dev all 1.0.7-1 [233 kB] Get:89 http://deb.debian.org/debian/ stretch/main xtrans-dev all 1.3.5-1 [100 kB] Get:90 http://deb.debian.org/debian/ stretch/main libice-dev amd64 2:1.0.9-2 [66.8 kB] Get:91 http://deb.debian.org/debian/ stretch/main lsb-base all 9.20161125 [27.9 kB] Get:92 http://deb.debian.org/debian/ stretch/main x11-common all 1:7.7+19 [251 kB] Get:93 http://deb.debian.org/debian/ stretch/main libice6 amd64 2:1.0.9-2 [58.7 kB] Get:94 http://deb.debian.org/debian/ stretch/main libsepol1 amd64 2.6-2 [241 kB] Get:95 http://deb.debian.org/debian/ stretch/main libsemanage-common all 2.6-2 [26.9 kB] Get:96 http://deb.debian.org/debian/ stretch/main libsemanage1 amd64 2.6-2 [103 kB] Get:97 http://deb.debian.org/debian/ stretch/main libustr-1.0-1 amd64 1.0.4-6 [76.3 kB] Get:98 http://deb.debian.org/debian/ stretch/main passwd amd64 1:4.4-4.1 [996 kB] Get:99 http://deb.debian.org/debian/ stretch/main libuuid1 amd64 2.29.2-1+deb9u1 [70.1 kB] Get:100 http://deb.debian.org/debian/ stretch/main libsm-dev amd64 2:1.2.2-1+b3 [35.8 kB] Get:101 http://deb.debian.org/debian/ stretch/main libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:102 http://deb.debian.org/debian/ stretch/main libxt-dev amd64 1:1.1.5-1 [423 kB] Get:103 http://deb.debian.org/debian/ stretch/main libxt6 amd64 1:1.1.5-1 [188 kB] Get:104 http://deb.debian.org/debian/ stretch/main libaudio2 amd64 1.9.4-5+b1 [79.9 kB] Get:105 http://deb.debian.org/debian/ stretch/main libdconf1 amd64 0.26.0-2+b1 [37.6 kB] Get:106 http://deb.debian.org/debian/ stretch/main dconf-gsettings-backend amd64 0.26.0-2+b1 [26.4 kB] Get:107 http://deb.debian.org/debian/ stretch/main dconf-service amd64 0.26.0-2+b1 [34.7 kB] Get:108 http://deb.debian.org/debian/ stretch/main libffi6 amd64 3.2.1-6 [20.4 kB] Get:109 http://deb.debian.org/debian/ stretch/main libblkid1 amd64 2.29.2-1+deb9u1 [168 kB] Get:110 http://deb.debian.org/debian/ stretch/main libmount1 amd64 2.29.2-1+deb9u1 [178 kB] Get:111 http://deb.debian.org/debian/ stretch/main libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:112 http://deb.debian.org/debian/ stretch/main liblqr-1-0 amd64 0.4.2-2+b2 [24.8 kB] Get:113 http://deb.debian.org/debian/ stretch/main poppler-data all 0.4.7-8 [1451 kB] Get:114 http://deb.debian.org/debian/ stretch/main sgml-base all 1.29 [14.8 kB] Get:115 http://deb.debian.org/debian/ stretch/main adduser all 3.115 [241 kB] Get:116 http://deb.debian.org/debian/ stretch/main libgpg-error0 amd64 1.26-2 [112 kB] Get:117 http://deb.debian.org/debian/ stretch/main libgcrypt20 amd64 1.7.6-2+deb9u3 [524 kB] Get:118 http://deb.debian.org/debian/ stretch/main gpgv amd64 2.1.18-8~deb9u4 [481 kB] Get:119 http://deb.debian.org/debian/ stretch/main debian-archive-keyring all 2017.5+deb9u1 [73.9 kB] Get:120 http://deb.debian.org/debian/ stretch/main libkmod2 amd64 23-2 [48.1 kB] Get:121 http://deb.debian.org/debian/ stretch/main libslang2 amd64 2.3.1-5 [503 kB] Get:122 http://deb.debian.org/debian/ stretch/main readline-common all 7.0-3 [70.4 kB] Get:123 http://deb.debian.org/debian/ stretch/main libattr1 amd64 1:2.4.47-2+b2 [18.4 kB] Get:124 http://deb.debian.org/debian/ stretch/main libacl1 amd64 2.2.52-3+b1 [28.1 kB] Get:125 http://deb.debian.org/debian/ stretch/main acl amd64 2.2.52-3+b1 [59.5 kB] Get:126 http://deb.debian.org/debian/ stretch/main libcomerr2 amd64 1.43.4-2+deb9u1 [63.5 kB] Get:127 http://deb.debian.org/debian/ stretch/main libpam-runtime all 1.1.8-3.6 [212 kB] Get:128 http://deb.debian.org/debian/ stretch/main libss2 amd64 1.43.4-2+deb9u1 [67.8 kB] Get:129 http://deb.debian.org/debian/ stretch/main multiarch-support amd64 2.24-11+deb9u4 [201 kB] Get:130 http://deb.debian.org/debian/ stretch/main libcap2 amd64 1:2.25-1 [16.8 kB] Get:131 http://deb.debian.org/debian/ stretch/main libdb5.3 amd64 5.3.28-12+deb9u1 [679 kB] Get:132 http://deb.debian.org/debian/ stretch/main dmsetup amd64 2:1.02.137-2 [107 kB] Get:133 http://deb.debian.org/debian/ stretch/main libdevmapper1.02.1 amd64 2:1.02.137-2 [170 kB] Get:134 http://deb.debian.org/debian/ stretch/main insserv amd64 1.14.0-5.4+b1 [61.8 kB] Get:135 http://deb.debian.org/debian/ stretch/main libcap2-bin amd64 1:2.25-1 [26.5 kB] Get:136 http://deb.debian.org/debian/ stretch/main libcryptsetup4 amd64 2:1.7.3-4 [109 kB] Get:137 http://deb.debian.org/debian/ stretch/main libusb-0.1-4 amd64 2:0.1.12-30 [22.9 kB] Get:138 http://deb.debian.org/debian/ stretch/main startpar amd64 0.59-3.1 [22.5 kB] Get:139 http://deb.debian.org/debian/ stretch/main dmidecode amd64 3.0-4 [68.3 kB] Get:140 http://deb.debian.org/debian/ stretch/main libpopt0 amd64 1.16-10+b2 [49.4 kB] Get:141 http://deb.debian.org/debian/ stretch/main update-inetd all 4.44 [20.8 kB] Get:142 http://deb.debian.org/debian/ stretch/main netbase all 5.4 [19.1 kB] Get:143 http://deb.debian.org/debian/ stretch/main gettext-base amd64 0.19.8.1-2+deb9u1 [122 kB] Get:144 http://deb.debian.org/debian/ stretch/main krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:145 http://deb.debian.org/debian/ stretch/main libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:146 http://deb.debian.org/debian/ stretch/main libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:147 http://deb.debian.org/debian/ stretch/main libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:148 http://deb.debian.org/debian/ stretch/main libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:149 http://deb.debian.org/debian/ stretch/main libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:150 http://deb.debian.org/debian/ stretch/main libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:151 http://deb.debian.org/debian/ stretch/main libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:152 http://deb.debian.org/debian/ stretch/main libp11-kit0 amd64 0.23.3-2 [111 kB] Get:153 http://deb.debian.org/debian/ stretch/main libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:154 http://deb.debian.org/debian/ stretch/main libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:155 http://deb.debian.org/debian/ stretch/main libwrap0 amd64 7.6.q-26 [58.2 kB] Get:156 http://deb.debian.org/debian/ stretch/main manpages all 4.10-2 [1222 kB] Get:157 http://deb.debian.org/debian/ stretch/main mime-support all 3.60 [36.7 kB] Get:158 http://deb.debian.org/debian/ stretch/main abacas all 1.3.1-3 [23.9 kB] Get:159 http://deb.debian.org/debian/ stretch/main libbytecode-java all 0.92.svn.20090106-2 [89.1 kB] Get:160 http://deb.debian.org/debian/ stretch/main libcommons-cli-java all 1.3.1-3 [55.2 kB] Get:161 http://deb.debian.org/debian/ stretch/main libcommons-collections3-java all 3.2.2-1 [599 kB] Get:162 http://deb.debian.org/debian/ stretch/main libcommons-pool-java all 1.6-3 [104 kB] Get:163 http://deb.debian.org/debian/ stretch/main alien-hunter all 1.7-5 [28.4 kB] Get:164 http://deb.debian.org/debian/ stretch/main ant-optional all 1.9.9-1+deb9u1 [350 kB] Get:165 http://deb.debian.org/debian/ stretch/main ant all 1.9.9-1+deb9u1 [1923 kB] Get:166 http://deb.debian.org/debian/ stretch/main libmaloc1 amd64 0.2-3.1 [49.3 kB] Get:167 http://deb.debian.org/debian/ stretch/main apbs amd64 1.4-1+b1 [218 kB] Get:168 http://deb.debian.org/debian/ stretch/main aragorn amd64 1.2.38-1 [86.0 kB] Get:169 http://deb.debian.org/debian/ stretch/main libblas-dev amd64 3.7.0-2 [162 kB] Get:170 http://deb.debian.org/debian/ stretch/main libblas-common amd64 3.7.0-2 [14.2 kB] Get:171 http://deb.debian.org/debian/ stretch/main libatlas3-base amd64 3.10.3-1+b1 [3048 kB] Get:172 http://deb.debian.org/debian/ stretch/main libblas3 amd64 3.7.0-2 [155 kB] Get:173 http://deb.debian.org/debian/ stretch/main liblapack-dev amd64 3.7.0-2 [2170 kB] Get:174 http://deb.debian.org/debian/ stretch/main liblapack3 amd64 3.7.0-2 [2141 kB] Get:175 http://deb.debian.org/debian/ stretch/main python-numpy amd64 1:1.12.1-3 [1936 kB] Get:176 http://deb.debian.org/debian/ stretch/main arden all 1.0-3 [88.7 kB] Get:177 http://deb.debian.org/debian/ stretch/main dictionaries-common all 1.27.2 [245 kB] Get:178 http://deb.debian.org/debian/ stretch/main aspell-en all 2016.11.20-0-0.1 [299 kB] Get:179 http://deb.debian.org/debian/ stretch/main libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:180 http://deb.debian.org/debian/ stretch/main libgettextpo-dev amd64 0.19.8.1-2+deb9u1 [169 kB] Get:181 http://deb.debian.org/debian/ stretch/main libgettextpo0 amd64 0.19.8.1-2+deb9u1 [149 kB] Get:182 http://deb.debian.org/debian/ stretch/main libcroco3 amd64 0.6.11-3 [143 kB] Get:183 http://deb.debian.org/debian/ stretch/main gettext amd64 0.19.8.1-2+deb9u1 [1496 kB] Get:184 http://deb.debian.org/debian/ stretch/main autopoint all 0.19.8.1-2+deb9u1 [433 kB] Get:185 http://deb.debian.org/debian/ stretch/main autotools-dev all 20161112.1 [73.4 kB] Get:186 http://deb.debian.org/debian/ stretch/main binfmt-support amd64 2.1.6-2 [59.5 kB] Get:187 http://deb.debian.org/debian/ stretch/main libdata-stag-perl all 0.14-2 [448 kB] Get:188 http://deb.debian.org/debian/ stretch/main bioperl all 1.7.1-2 [422 kB] Get:189 http://deb.debian.org/debian/ stretch/main libbio-perl-perl all 1.7.1-2 [4605 kB] Get:190 http://deb.debian.org/debian/ stretch/main biosquid amd64 1.9g+cvs20050121-7 [188 kB] Get:191 http://deb.debian.org/debian/ stretch/main blends-common all 0.6.96 [23.3 kB] Get:192 http://deb.debian.org/debian/ stretch/main libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:193 http://deb.debian.org/debian/ stretch/main libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:194 http://deb.debian.org/debian/ stretch/main libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:195 http://deb.debian.org/debian/ stretch/main libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:196 http://deb.debian.org/debian/ stretch/main libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:197 http://deb.debian.org/debian/ stretch/main blt amd64 2.5.3+dfsg-3 [14.6 kB] Get:198 http://deb.debian.org/debian/ stretch/main tk8.6-blt2.5 amd64 2.5.3+dfsg-3 [585 kB] Get:199 http://deb.debian.org/debian/ stretch/main boxshade amd64 3.3.1-10 [54.4 kB] Get:200 http://deb.debian.org/debian/ stretch/main bwa amd64 0.7.15-2+deb9u1 [194 kB] Get:201 http://deb.debian.org/debian/ stretch/main bzip2-doc all 1.0.6-8.1 [307 kB] Get:202 http://deb.debian.org/debian/ stretch/main ca-certificates all 20200601~deb9u1 [160 kB] Get:203 http://deb.debian.org/debian/ stretch/main libnspr4 amd64 2:4.12-6 [117 kB] Get:204 http://deb.debian.org/debian/ stretch/main libnss3 amd64 2:3.26.2-1.1+deb9u1 [1161 kB] Get:205 http://deb.debian.org/debian/ stretch/main ca-certificates-java all 20170929~deb9u3 [15.1 kB] Get:206 http://deb.debian.org/debian/ stretch/main cdbs all 0.4.150 [82.6 kB] Get:207 http://deb.debian.org/debian/ stretch/main microbiomeutil-data all 20101212+dfsg1-1 [2242 kB] Get:208 http://deb.debian.org/debian/ stretch/main chimeraslayer all 20101212+dfsg1-1 [33.5 kB] Get:209 http://deb.debian.org/debian/ stretch/main circos-tools all 0.22-1 [18.7 MB] Get:210 http://deb.debian.org/debian/ stretch/main clearcut amd64 1.0.9-1+b1 [283 kB] Get:211 http://deb.debian.org/debian/ stretch/main colord-data all 1.3.3-2 [1297 kB] Get:212 http://deb.debian.org/debian/ stretch/main cython amd64 0.25.2-1 [1863 kB] Get:213 http://deb.debian.org/debian/ stretch/main dh-python all 2.20170125 [86.8 kB] Get:214 http://deb.debian.org/debian/ stretch/main dialign amd64 2.2.1-8 [138 kB] Get:215 http://deb.debian.org/debian/ stretch/main dialign-tx amd64 1.0.2-9 [85.7 kB] Get:216 http://deb.debian.org/debian/ stretch/main dialign-tx-data all 1.0.2-9 [869 kB] Get:217 http://deb.debian.org/debian/ stretch/main python-roman all 2.0.0-2 [8130 B] Get:218 http://deb.debian.org/debian/ stretch/main python-docutils all 0.13.1+dfsg-2 [373 kB] Get:219 http://deb.debian.org/debian/ stretch/main xml-core all 0.17 [23.2 kB] Get:220 http://deb.debian.org/debian/ stretch/main docutils-common all 0.13.1+dfsg-2 [200 kB] Get:221 http://deb.debian.org/debian/ stretch/main docutils-doc all 0.13.1+dfsg-2 [913 kB] Get:222 http://deb.debian.org/debian/ stretch/main embassy-domainatrix amd64 0.1.660-1 [61.7 kB] Get:223 http://deb.debian.org/debian/ stretch/main embassy-domalign amd64 0.1.660-1 [66.7 kB] Get:224 http://deb.debian.org/debian/ stretch/main embassy-domsearch amd64 1:0.1.660-1 [60.6 kB] Get:225 http://deb.debian.org/debian/ stretch/main exonerate amd64 2.4.0-2 [1476 kB] Get:226 http://deb.debian.org/debian/ stretch/main libfakeroot amd64 1.21-3.1 [45.7 kB] Get:227 http://deb.debian.org/debian/ stretch/main fakeroot amd64 1.21-3.1 [85.6 kB] Get:228 http://deb.debian.org/debian/ stretch/main python3-pkg-resources all 33.1.1-1 [137 kB] Get:229 http://deb.debian.org/debian/ stretch/main fastaq all 3.14.0-1 [46.6 kB] Get:230 http://deb.debian.org/debian/ stretch/main fastdnaml amd64 1.2.2-11+b1 [60.5 kB] Get:231 http://deb.debian.org/debian/ stretch/main fastjar amd64 2:0.98-6+b1 [81.0 kB] Get:232 http://deb.debian.org/debian/ stretch/main fastlink amd64 4.1P-fix100+dfsg-1+b1 [250 kB] Get:233 http://deb.debian.org/debian/ stretch/main fitgcp amd64 0.0.20150429-1 [12.3 kB] Get:234 http://deb.debian.org/debian/ stretch/main fonts-circos-symbols all 0.69.4+dfsg-1 [45.8 kB] Get:235 http://deb.debian.org/debian/ stretch/main fonts-dejavu-extra all 2.37-1 [1982 kB] Get:236 http://deb.debian.org/debian/ stretch/main fonts-dejavu all 2.37-1 [32.3 kB] Get:237 http://deb.debian.org/debian/ stretch/main fonts-ebgaramond all 0.016-1 [475 kB] Get:238 http://deb.debian.org/debian/ stretch/main fonts-ebgaramond-extra all 0.016-1 [2157 kB] Get:239 http://deb.debian.org/debian/ stretch/main fonts-font-awesome all 4.7.0~dfsg-1 [514 kB] Get:240 http://deb.debian.org/debian/ stretch/main fonts-freefont-otf all 20120503-6 [3168 kB] Get:241 http://deb.debian.org/debian/ stretch/main fonts-freefont-ttf all 20120503-6 [4316 kB] Get:242 http://deb.debian.org/debian/ stretch/main fonts-lyx all 2.2.2-1 [197 kB] Get:243 http://deb.debian.org/debian/ stretch/main fonts-sil-gentium all 20081126:1.03-1 [251 kB] Get:244 http://deb.debian.org/debian/ stretch/main libdrm2 amd64 2.4.74-1 [36.2 kB] Get:245 http://deb.debian.org/debian/ stretch/main libgl1-mesa-glx amd64 13.0.6-1+b2 [167 kB] Get:246 http://deb.debian.org/debian/ stretch/main libglapi-mesa amd64 13.0.6-1+b2 [58.9 kB] Get:247 http://deb.debian.org/debian/ stretch/main libx11-xcb1 amd64 2:1.6.4-3+deb9u1 [183 kB] Get:248 http://deb.debian.org/debian/ stretch/main libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:249 http://deb.debian.org/debian/ stretch/main libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:250 http://deb.debian.org/debian/ stretch/main libxcb-glx0 amd64 1.12-1 [113 kB] Get:251 http://deb.debian.org/debian/ stretch/main libxcb-present0 amd64 1.12-1 [95.8 kB] Get:252 http://deb.debian.org/debian/ stretch/main libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:253 http://deb.debian.org/debian/ stretch/main libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:254 http://deb.debian.org/debian/ stretch/main libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:255 http://deb.debian.org/debian/ stretch/main libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:256 http://deb.debian.org/debian/ stretch/main libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:257 http://deb.debian.org/debian/ stretch/main libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:258 http://deb.debian.org/debian/ stretch/main freeglut3 amd64 2.8.1-3 [123 kB] Get:259 http://deb.debian.org/debian/ stretch/main ttf-dejavu-core all 2.37-1 [32.1 kB] Get:260 http://deb.debian.org/debian/ stretch/main ttf-dejavu-extra all 2.37-1 [32.2 kB] Get:261 http://deb.debian.org/debian/ stretch/main ttf-dejavu all 2.37-1 [32.0 kB] Get:262 http://deb.debian.org/debian/ stretch/main libglu1-mesa amd64 9.0.0-2.1 [168 kB] Get:263 http://deb.debian.org/debian/ stretch/main libatk1.0-0 amd64 2.22.0-1 [78.4 kB] Get:264 http://deb.debian.org/debian/ stretch/main libatk1.0-data all 2.22.0-1 [172 kB] Get:265 http://deb.debian.org/debian/ stretch/main libpangox-1.0-0 amd64 0.0.2-5+b2 [42.3 kB] Get:266 http://deb.debian.org/debian/ stretch/main libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:267 http://deb.debian.org/debian/ stretch/main libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:268 http://deb.debian.org/debian/ stretch/main libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:269 http://deb.debian.org/debian/ stretch/main libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:270 http://deb.debian.org/debian/ stretch/main libpangoxft-1.0-0 amd64 1.40.5-1 [187 kB] Get:271 http://deb.debian.org/debian/ stretch/main libpango1.0-0 amd64 1.40.5-1 [177 kB] Get:272 http://deb.debian.org/debian/ stretch/main libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:273 http://deb.debian.org/debian/ stretch/main libthai-data all 0.1.26-1 [166 kB] Get:274 http://deb.debian.org/debian/ stretch/main libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:275 http://deb.debian.org/debian/ stretch/main libthai0 amd64 0.1.26-1 [52.1 kB] Get:276 http://deb.debian.org/debian/ stretch/main libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:277 http://deb.debian.org/debian/ stretch/main libgtkglext1 amd64 1.2.0-4 [90.3 kB] Get:278 http://deb.debian.org/debian/ stretch/main gamgi amd64 0.17.1-1+b1 [734 kB] Get:279 http://deb.debian.org/debian/ stretch/main garlic amd64 1.6-1.1+b2 [231 kB] Get:280 http://deb.debian.org/debian/ stretch/main python-reportlab-accel amd64 3.3.0-2+deb9u1 [36.8 kB] Get:281 http://deb.debian.org/debian/ stretch/main python-reportlab all 3.3.0-2+deb9u1 [478 kB] Get:282 http://deb.debian.org/debian/ stretch/main python-biopython amd64 1.68+dfsg-3 [1201 kB] Get:283 http://deb.debian.org/debian/ stretch/main gasic amd64 0.0.r19-1 [19.9 kB] Get:284 http://deb.debian.org/debian/ stretch/main gdpc amd64 2.2.5-6 [33.8 kB] Get:285 http://deb.debian.org/debian/ stretch/main liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:286 http://deb.debian.org/debian/ stretch/main libtre5 amd64 0.8.0-6 [58.5 kB] Get:287 http://deb.debian.org/debian/ stretch/main lua-filesystem amd64 1.6.3-1 [10.3 kB] Get:288 http://deb.debian.org/debian/ stretch/main lua-lpeg amd64 1.0.0-1 [30.4 kB] Get:289 http://deb.debian.org/debian/ stretch/main libpth20 amd64 2.0.7-20+b2 [78.5 kB] Get:290 http://deb.debian.org/debian/ stretch/main genometools-common all 1.5.9+ds-4 [171 kB] Get:291 http://deb.debian.org/debian/ stretch/main genometools amd64 1.5.9+ds-4 [1903 kB] Get:292 http://deb.debian.org/debian/ stretch/main gff2aplot amd64 2.0-8+b1 [311 kB] Get:293 http://deb.debian.org/debian/ stretch/main gff2ps all 0.98d-5 [44.6 kB] Get:294 http://deb.debian.org/debian/ stretch/main giira amd64 0.0.20140625-1 [144 kB] Get:295 http://deb.debian.org/debian/ stretch/main libfftw3-double3 amd64 3.3.5-3 [731 kB] Get:296 http://deb.debian.org/debian/ stretch/main glam2 amd64 1064-3+b1 [240 kB] Get:297 http://deb.debian.org/debian/ stretch/main gnuplot all 5.0.5+dfsg1-6+deb9u1 [70.8 kB] Get:298 http://deb.debian.org/debian/ stretch/main gnustep-common amd64 2.6.8-2.1 [115 kB] Get:299 http://deb.debian.org/debian/ stretch/main gnustep-base-common all 1.24.9-3.1+deb9u1 [254 kB] Get:300 http://deb.debian.org/debian/ stretch/main gnustep-base-runtime amd64 1.24.9-3.1+deb9u1 [190 kB] Get:301 http://deb.debian.org/debian/ stretch/main gnustep-gui-common all 0.25.0-4 [793 kB] Get:302 http://deb.debian.org/debian/ stretch/main libgetopt-euclid-perl all 0.4.5-2 [47.4 kB] Get:303 http://deb.debian.org/debian/ stretch/main grinder all 0.5.4-1 [79.5 kB] Get:304 http://deb.debian.org/debian/ stretch/main gsettings-desktop-schemas all 3.22.0-1 [473 kB] Get:305 http://deb.debian.org/debian/ stretch/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.3 [3126 kB] Get:306 http://deb.debian.org/debian/ stretch/main hicolor-icon-theme all 0.15-1 [9550 B] Get:307 http://deb.debian.org/debian/ stretch/main libpvm3 amd64 3.4.6-1+b2 [89.6 kB] Get:308 http://deb.debian.org/debian/ stretch/main hmmer2 amd64 2.3.2-13 [2653 kB] Get:309 http://deb.debian.org/debian/ stretch/main infernal amd64 1.1.2-1 [22.0 MB] Get:310 http://deb.debian.org/debian/ stretch/main intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:311 http://deb.debian.org/debian/ stretch/main iso-codes all 3.75-1 [2389 kB] Get:312 http://deb.debian.org/debian/ stretch/main jarwrapper all 0.59 [17.9 kB] Get:313 http://deb.debian.org/debian/ stretch/main java-common all 0.58+deb9u1 [13.6 kB] Get:314 http://deb.debian.org/debian/ stretch/main javahelp2 all 2.0.05.ds1-9 [877 kB] Get:315 http://deb.debian.org/debian/ stretch/main jmol-applet all 14.6.4+2016.11.05+dfsg1-3 [4067 kB] Get:316 http://deb.debian.org/debian/ stretch/main libhamcrest-java all 1.3-6 [378 kB] Get:317 http://deb.debian.org/debian/ stretch/main junit4 all 4.12-4 [286 kB] Get:318 http://deb.debian.org/debian/ stretch/main kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:319 http://deb.debian.org/debian/ stretch/main libbcprov-java all 1.56-1+deb9u2 [3637 kB] Get:320 http://deb.debian.org/debian/ stretch/main libbcpkix-java all 1.56-1+deb9u2 [714 kB] Get:321 http://deb.debian.org/debian/ stretch/main libmail-java all 1.5.6-2 [643 kB] Get:322 http://deb.debian.org/debian/ stretch/main libbcmail-java all 1.56-1+deb9u2 [152 kB] Get:323 http://deb.debian.org/debian/ stretch/main libitext-java all 2.1.7-11 [1072 kB] Get:324 http://deb.debian.org/debian/ stretch/main king all 2.23.161103+dfsg1-1 [1998 kB] Get:325 http://deb.debian.org/debian/ stretch/main ksh amd64 93u+20120801-3.1 [890 kB] Get:326 http://deb.debian.org/debian/ stretch/main laptop-detect amd64 0.13.8 [6162 B] Get:327 http://deb.debian.org/debian/ stretch/main libalgorithm-c3-perl all 0.10-1 [12.0 kB] Get:328 http://deb.debian.org/debian/ stretch/main libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:329 http://deb.debian.org/debian/ stretch/main libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:330 http://deb.debian.org/debian/ stretch/main libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:331 http://deb.debian.org/debian/ stretch/main libanyevent-cachedns-perl all 0.08-2 [7150 B] Get:332 http://deb.debian.org/debian/ stretch/main libanyevent-http-perl all 2.23-1 [34.6 kB] Get:333 http://deb.debian.org/debian/ stretch/main libao-common amd64 1.2.2-1 [11.3 kB] Get:334 http://deb.debian.org/debian/ stretch/main libao4 amd64 1.2.2-1 [41.0 kB] Get:335 http://deb.debian.org/debian/ stretch/main libapache2-reload-perl all 0.13-1 [17.4 kB] Get:336 http://deb.debian.org/debian/ stretch/main libapr1 amd64 1.5.2-5 [96.6 kB] Get:337 http://deb.debian.org/debian/ stretch/main libargtable2-0 amd64 13-1 [17.4 kB] Get:338 http://deb.debian.org/debian/ stretch/main libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:339 http://deb.debian.org/debian/ stretch/main libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:340 http://deb.debian.org/debian/ stretch/main libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:341 http://deb.debian.org/debian/ stretch/main libmodule-runtime-perl all 0.014-2 [18.0 kB] Get:342 http://deb.debian.org/debian/ stretch/main libimport-into-perl all 1.002005-1 [11.6 kB] Get:343 http://deb.debian.org/debian/ stretch/main librole-tiny-perl all 2.000005-1 [19.0 kB] Get:344 http://deb.debian.org/debian/ stretch/main libstrictures-perl all 2.000003-1 [18.1 kB] Get:345 http://deb.debian.org/debian/ stretch/main libmoo-perl all 2.002005-1 [67.0 kB] Get:346 http://deb.debian.org/debian/ stretch/main libexporter-tiny-perl all 0.042-1 [32.4 kB] Get:347 http://deb.debian.org/debian/ stretch/main libtype-tiny-perl all 1.000005-1 [271 kB] Get:348 http://deb.debian.org/debian/ stretch/main libarray-compare-perl all 3.0.0-1 [14.0 kB] Get:349 http://deb.debian.org/debian/ stretch/main libasound2 amd64 1.1.3-5 [497 kB] Get:350 http://deb.debian.org/debian/ stretch/main libasound2-data all 1.1.3-5 [173 kB] Get:351 http://deb.debian.org/debian/ stretch/main libasyncns0 amd64 0.8-6 [12.5 kB] Get:352 http://deb.debian.org/debian/ stretch/main libfontenc1 amd64 1:1.1.3-1+b2 [24.4 kB] Get:353 http://deb.debian.org/debian/ stretch/main libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:354 http://deb.debian.org/debian/ stretch/main libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:355 http://deb.debian.org/debian/ stretch/main libxcb-shape0 amd64 1.12-1 [96.2 kB] Get:356 http://deb.debian.org/debian/ stretch/main libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get:357 http://deb.debian.org/debian/ stretch/main libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:358 http://deb.debian.org/debian/ stretch/main libxmuu1 amd64 2:1.1.2-2 [23.5 kB] Get:359 http://deb.debian.org/debian/ stretch/main libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:360 http://deb.debian.org/debian/ stretch/main libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:361 http://deb.debian.org/debian/ stretch/main libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:362 http://deb.debian.org/debian/ stretch/main libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:363 http://deb.debian.org/debian/ stretch/main x11-utils amd64 7.7+3+b1 [202 kB] Get:364 http://deb.debian.org/debian/ stretch/main libatk-wrapper-java all 0.33.3-13+deb9u1 [44.1 kB] Get:365 http://deb.debian.org/debian/ stretch/main libatm1 amd64 1:2.5.1-2 [71.0 kB] Get:366 http://deb.debian.org/debian/ stretch/main libavahi-common-data amd64 0.6.32-2 [118 kB] Get:367 http://deb.debian.org/debian/ stretch/main libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:368 http://deb.debian.org/debian/ stretch/main libcommons-codec-java all 1.10-1 [234 kB] Get:369 http://deb.debian.org/debian/ stretch/main libcommons-httpclient-java all 3.1-12 [298 kB] Get:370 http://deb.debian.org/debian/ stretch/main libwsdl4j-java all 1.6.3-4 [177 kB] Get:371 http://deb.debian.org/debian/ stretch/main libaxis-java all 1.4-25 [1503 kB] Get:372 http://deb.debian.org/debian/ stretch/main libball1.4-data all 1.4.3~beta1-3 [28.7 MB] Get:373 http://deb.debian.org/debian/ stretch/main libbio-asn1-entrezgene-perl all 1.720-1 [38.5 kB] Get:374 http://deb.debian.org/debian/ stretch/main libbio-graphics-perl all 2.40-1 [611 kB] Get:375 http://deb.debian.org/debian/ stretch/main libcaca0 amd64 0.99.beta19-2.1~deb9u1 [347 kB] Get:376 http://deb.debian.org/debian/ stretch/main liberror-perl all 0.17024-1 [26.9 kB] Get:377 http://deb.debian.org/debian/ stretch/main libcache-cache-perl all 1.08-2 [76.6 kB] Get:378 http://deb.debian.org/debian/ stretch/main libcairo-gobject2 amd64 1.14.8-1 [336 kB] Get:379 http://deb.debian.org/debian/ stretch/main libltdl7 amd64 2.4.6-2 [389 kB] Get:380 http://deb.debian.org/debian/ stretch/main libtdb1 amd64 1.3.11-2 [43.2 kB] Get:381 http://deb.debian.org/debian/ stretch/main libvorbisenc2 amd64 1.3.5-4+deb9u2 [79.4 kB] Get:382 http://deb.debian.org/debian/ stretch/main libvorbisfile3 amd64 1.3.5-4+deb9u2 [24.4 kB] Get:383 http://deb.debian.org/debian/ stretch/main libvorbis0a amd64 1.3.5-4+deb9u2 [91.7 kB] Get:384 http://deb.debian.org/debian/ stretch/main libcanberra0 amd64 0.30-3 [40.0 kB] Get:385 http://deb.debian.org/debian/ stretch/main libcanberra-gtk3-0 amd64 0.30-3 [15.4 kB] Get:386 http://deb.debian.org/debian/ stretch/main libcanberra-gtk3-module amd64 0.30-3 [17.4 kB] Get:387 http://deb.debian.org/debian/ stretch/main libcarp-clan-perl all 6.06-1 [12.9 kB] Get:388 http://deb.debian.org/debian/ stretch/main libcastor-core-java all 1.3.2-4 [51.8 kB] Get:389 http://deb.debian.org/debian/ stretch/main libcastor-xml-java all 1.3.2-4 [713 kB] Get:390 http://deb.debian.org/debian/ stretch/main libcdt5 amd64 2.38.0-17 [59.6 kB] Get:391 http://deb.debian.org/debian/ stretch/main libcgi-fast-perl all 1:2.12-1 [11.2 kB] Get:392 http://deb.debian.org/debian/ stretch/main libcgi-pm-perl all 4.35-1 [222 kB] Get:393 http://deb.debian.org/debian/ stretch/main libcgi-session-perl all 4.48-3 [119 kB] Get:394 http://deb.debian.org/debian/ stretch/main libcgraph6 amd64 2.38.0-17 [82.2 kB] Get:395 http://deb.debian.org/debian/ stretch/main libclass-c3-perl all 0.32-1 [22.1 kB] Get:396 http://deb.debian.org/debian/ stretch/main libclass-inspector-perl all 1.31-1 [18.7 kB] Get:397 http://deb.debian.org/debian/ stretch/main liblcms2-2 amd64 2.8-4+deb9u1 [143 kB] Get:398 http://deb.debian.org/debian/ stretch/main libcolord2 amd64 1.3.3-2 [252 kB] Get:399 http://deb.debian.org/debian/ stretch/main libusb-1.0-0 amd64 2:1.0.21-1 [53.9 kB] Get:400 http://deb.debian.org/debian/ stretch/main libgusb2 amd64 0.2.9-1+b1 [23.8 kB] Get:401 http://deb.debian.org/debian/ stretch/main libcolorhug2 amd64 1.3.3-2 [183 kB] Get:402 http://deb.debian.org/debian/ stretch/main libcommons-parent-java all 39-3 [9350 B] Get:403 http://deb.debian.org/debian/ stretch/main libcommons-compress-java all 1.13-1 [430 kB] Get:404 http://deb.debian.org/debian/ stretch/main libcommons-io-java all 2.5-1 [206 kB] Get:405 http://deb.debian.org/debian/ stretch/main libcommons-jexl2-java all 2.1.1-3 [246 kB] Get:406 http://deb.debian.org/debian/ stretch/main libcommons-lang-java all 2.6-6 [269 kB] Get:407 http://deb.debian.org/debian/ stretch/main libcommons-math3-java all 3.6.1-2 [1941 kB] Get:408 http://deb.debian.org/debian/ stretch/main libconfig-general-perl all 2.63-1 [70.5 kB] Get:409 http://deb.debian.org/debian/ stretch/main libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:410 http://deb.debian.org/debian/ stretch/main libcr0 amd64 0.8.5-2.3+b1 [33.2 kB] Get:411 http://deb.debian.org/debian/ stretch/main libdata-dumper-simple-perl all 0.11-5 [12.9 kB] Get:412 http://deb.debian.org/debian/ stretch/main libdata-optlist-perl all 0.110-1 [10.6 kB] Get:413 http://deb.debian.org/debian/ stretch/main libdate-manip-perl all 6.57-1 [911 kB] Get:414 http://deb.debian.org/debian/ stretch/main libdevel-symdump-perl all 2.17-1 [17.0 kB] Get:415 http://deb.debian.org/debian/ stretch/main libdirectfb-1.2-9 amd64 1.2.10.0-8+deb9u1 [605 kB] Get:416 http://deb.debian.org/debian/ stretch/main libdjvulibre-text all 3.5.27.1-7 [60.7 kB] Get:417 http://deb.debian.org/debian/ stretch/main libjaxen-java all 1.1.6-1+deb9u1 [205 kB] Get:418 http://deb.debian.org/debian/ stretch/main libisorelax-java all 20041111-9 [62.4 kB] Get:419 http://deb.debian.org/debian/ stretch/main libmsv-java all 2009.1+dfsg1-5 [771 kB] Get:420 http://deb.debian.org/debian/ stretch/main libdom4j-java all 1.6.1+dfsg.3-2+deb9u1 [348 kB] Get:421 http://deb.debian.org/debian/ stretch/main libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:422 http://deb.debian.org/debian/ stretch/main libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:423 http://deb.debian.org/debian/ stretch/main libdrm-nouveau2 amd64 2.4.74-1 [25.1 kB] Get:424 http://deb.debian.org/debian/ stretch/main libdrm-radeon1 amd64 2.4.74-1 [30.2 kB] Get:425 http://deb.debian.org/debian/ stretch/main libelf1 amd64 0.168-1 [157 kB] Get:426 http://deb.debian.org/debian/ stretch/main libelk0 amd64 3.99.8-4.1+b1 [166 kB] Get:427 http://deb.debian.org/debian/ stretch/main libencode-locale-perl all 1.05-1 [13.7 kB] Get:428 http://deb.debian.org/debian/ stretch/main libexif12 amd64 0.6.21-2+deb9u4 [324 kB] Get:429 http://deb.debian.org/debian/ stretch/main libfann2 amd64 2.2.0+ds-3 [66.1 kB] Get:430 http://deb.debian.org/debian/ stretch/main libfftw3-single3 amd64 3.3.5-3 [776 kB] Get:431 http://deb.debian.org/debian/ stretch/main liburi-perl all 1.71-1 [88.6 kB] Get:432 http://deb.debian.org/debian/ stretch/main libfile-desktopentry-perl all 0.22-1 [19.2 kB] Get:433 http://deb.debian.org/debian/ stretch/main shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:434 http://deb.debian.org/debian/ stretch/main libfile-mimeinfo-perl all 0.27-1 [50.2 kB] Get:435 http://deb.debian.org/debian/ stretch/main libfile-which-perl all 1.21-1 [14.3 kB] Get:436 http://deb.debian.org/debian/ stretch/main libflac8 amd64 1.3.2-1 [221 kB] Get:437 http://deb.debian.org/debian/ stretch/main libfont-afm-perl all 1.20-2 [13.6 kB] Get:438 http://deb.debian.org/debian/ stretch/main libfont-ttf-perl all 1.06-1 [317 kB] Get:439 http://deb.debian.org/debian/ stretch/main libnb-org-openide-util-lookup-java all 8.1+dfsg1-5 [80.4 kB] Get:440 http://deb.debian.org/debian/ stretch/main libnb-org-openide-util-java all 8.1+dfsg1-5 [167 kB] Get:441 http://deb.debian.org/debian/ stretch/main libfreehep-util-java all 2.0.2-6 [46.8 kB] Get:442 http://deb.debian.org/debian/ stretch/main libfreehep-swing-java all 2.0.3-4 [188 kB] Get:443 http://deb.debian.org/debian/ stretch/main libfreehep-export-java all 2.1.1-3 [20.8 kB] Get:444 http://deb.debian.org/debian/ stretch/main libfreehep-graphics2d-java all 2.1.1-5 [121 kB] Get:445 http://deb.debian.org/debian/ stretch/main libfreehep-io-java all 2.0.2-5 [59.6 kB] Get:446 http://deb.debian.org/debian/ stretch/main libfreehep-graphicsio-java all 2.1.1-4 [170 kB] Get:447 http://deb.debian.org/debian/ stretch/main libtablelayout-java all 20090826-3 [44.5 kB] Get:448 http://deb.debian.org/debian/ stretch/main libjas-plotter-java all 2.2.6+dfsg1-3 [584 kB] Get:449 http://deb.debian.org/debian/ stretch/main libfreehep-graphicsio-tests-java all 2.1.1+dfsg1-4 [99.9 kB] Get:450 http://deb.debian.org/debian/ stretch/main libfreehep-graphicsio-emf-java all 2.1.1-emfplus+dfsg1-3 [183 kB] Get:451 http://deb.debian.org/debian/ stretch/main libfreehep-graphicsio-pdf-java all 2.1.1+dfsg-2 [71.9 kB] Get:452 http://deb.debian.org/debian/ stretch/main libfreehep-graphicsio-ps-java all 2.1.1-2 [46.5 kB] Get:453 http://deb.debian.org/debian/ stretch/main libfreehep-xml-java all 2.1.2+dfsg1-4 [131 kB] Get:454 http://deb.debian.org/debian/ stretch/main libfreehep-graphicsio-svg-java all 2.1.1-4 [25.1 kB] Get:455 http://deb.debian.org/debian/ stretch/main libfreehep-graphicsio-swf-java all 2.1.1+dfsg-2 [155 kB] Get:456 http://deb.debian.org/debian/ stretch/main libg20 amd64 0.72-6 [42.5 kB] Get:457 http://deb.debian.org/debian/ stretch/main libgetopt-simple-perl all 1.52-5 [14.4 kB] Get:458 http://deb.debian.org/debian/ stretch/main libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:459 http://deb.debian.org/debian/ stretch/main libgnumail-java all 1.1.2-10 [278 kB] Get:460 http://deb.debian.org/debian/ stretch/main libipc-run-perl all 0.94-1+deb9u1 [99.1 kB] Get:461 http://deb.debian.org/debian/ stretch/main libparse-recdescent-perl all 1.967013+dfsg-1 [159 kB] Get:462 http://deb.debian.org/debian/ stretch/main libxml-twig-perl all 1:3.50-1 [179 kB] Get:463 http://deb.debian.org/debian/ stretch/main libxml-xpath-perl all 1.40-1 [69.2 kB] Get:464 http://deb.debian.org/debian/ stretch/main libgraphviz-perl all 2.22-1 [107 kB] Get:465 http://deb.debian.org/debian/ stretch/main libyaml-perl all 1.21-1 [64.8 kB] Get:466 http://deb.debian.org/debian/ stretch/main libgo-perl all 0.15-5 [268 kB] Get:467 http://deb.debian.org/debian/ stretch/main libgphoto2-l10n all 2.5.12-1 [430 kB] Get:468 http://deb.debian.org/debian/ stretch/main libgraph-perl all 1:0.96-2 [126 kB] Get:469 http://deb.debian.org/debian/ stretch/main libgraphics-colornames-perl all 2.11-7.1 [37.9 kB] Get:470 http://deb.debian.org/debian/ stretch/main libgraphics-colorobject-perl all 0.5.0-7.1 [28.2 kB] Get:471 http://deb.debian.org/debian/ stretch/main libgtk-3-common all 3.22.11-1 [3416 kB] Get:472 http://deb.debian.org/debian/ stretch/main libgtk2.0-common all 2.24.31-2 [2693 kB] Get:473 http://deb.debian.org/debian/ stretch/main libgudev-1.0-0 amd64 230-3 [12.9 kB] Get:474 http://deb.debian.org/debian/ stretch/main libgvpr2 amd64 2.38.0-17 [211 kB] Get:475 http://deb.debian.org/debian/ stretch/main libheap-perl all 0.80-3 [34.2 kB] Get:476 http://deb.debian.org/debian/ stretch/main libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:477 http://deb.debian.org/debian/ stretch/main libhtml-tree-perl all 5.03-2 [210 kB] Get:478 http://deb.debian.org/debian/ stretch/main libhtml-format-perl all 2.12-1 [43.5 kB] Get:479 http://deb.debian.org/debian/ stretch/main libhtml-tableextract-perl all 2.13-1 [30.7 kB] Get:480 http://deb.debian.org/debian/ stretch/main libhttp-message-perl all 6.11-1 [75.9 kB] Get:481 http://deb.debian.org/debian/ stretch/main libhttpmime-java all 4.5.2-2 [41.4 kB] Get:482 http://deb.debian.org/debian/ stretch/main libhttpcore-java all 4.4.6-1 [592 kB] Get:483 http://deb.debian.org/debian/ stretch/main libhttpclient-java all 4.5.2-2 [705 kB] Get:484 http://deb.debian.org/debian/ stretch/main libieee1284-3 amd64 0.2.11-13 [28.9 kB] Get:485 http://deb.debian.org/debian/ stretch/main libijs-0.35 amd64 0.35-12 [18.4 kB] Get:486 http://deb.debian.org/debian/ stretch/main libio-all-perl all 0.86-2 [73.4 kB] Get:487 http://deb.debian.org/debian/ stretch/main libio-socket-ssl-perl all 2.044-1 [195 kB] Get:488 http://deb.debian.org/debian/ stretch/main libio-stringy-perl all 2.111-2 [61.2 kB] Get:489 http://deb.debian.org/debian/ stretch/main libitext5-java all 5.5.6-2 [2152 kB] Get:490 http://deb.debian.org/debian/ stretch/main libjam-java all 0.1.20140824-2 [159 kB] Get:491 http://deb.debian.org/debian/ stretch/main libjbig2dec0 amd64 0.13-4.1 [60.1 kB] Get:492 http://deb.debian.org/debian/ stretch/main libjcommon-java all 1.0.23-1 [466 kB] Get:493 http://deb.debian.org/debian/ stretch/main libjebl2-java all 0.1+20140614-1 [496 kB] Get:494 http://deb.debian.org/debian/ stretch/main libjets3t-java all 0.8.1+dfsg-3 [478 kB] Get:495 http://deb.debian.org/debian/ stretch/main libjgoodies-common-java all 1.8.1-2 [35.7 kB] Get:496 http://deb.debian.org/debian/ stretch/main libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:497 http://deb.debian.org/debian/ stretch/main libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:498 http://deb.debian.org/debian/ stretch/main libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:499 http://deb.debian.org/debian/ stretch/main libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:500 http://deb.debian.org/debian/ stretch/main libjs-jquery-ui all 1.12.1+dfsg-4 [232 kB] Get:501 http://deb.debian.org/debian/ stretch/main libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] Get:502 http://deb.debian.org/debian/ stretch/main libjsch-java all 0.1.54-1 [284 kB] Get:503 http://deb.debian.org/debian/ stretch/main libjson-glib-1.0-common all 1.2.6-1 [166 kB] Get:504 http://deb.debian.org/debian/ stretch/main libjson-glib-1.0-0 amd64 1.2.6-1 [178 kB] Get:505 http://deb.debian.org/debian/ stretch/main libjson-perl all 2.90-1 [86.0 kB] Get:506 http://deb.debian.org/debian/ stretch/main libjswingreader-java all 0.3-2 [79.2 kB] Get:507 http://deb.debian.org/debian/ stretch/main liblog4j1.2-java all 1.2.17-7+deb9u1 [431 kB] Get:508 http://deb.debian.org/debian/ stretch/main liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:509 http://deb.debian.org/debian/ stretch/main libsys-hostname-long-perl all 1.5-1 [12.0 kB] Get:510 http://deb.debian.org/debian/ stretch/main libmail-sendmail-perl all 0.79.16-2 [24.9 kB] Get:511 http://deb.debian.org/debian/ stretch/main libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:512 http://deb.debian.org/debian/ stretch/main libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:513 http://deb.debian.org/debian/ stretch/main libmailtools-perl all 2.18-1 [88.5 kB] Get:514 http://deb.debian.org/debian/ stretch/main libmath-bezier-perl all 0.01-2 [6910 B] Get:515 http://deb.debian.org/debian/ stretch/main libmath-derivative-perl all 0.04-2 [7208 B] Get:516 http://deb.debian.org/debian/ stretch/main libmath-round-perl all 0.07-1 [10.6 kB] Get:517 http://deb.debian.org/debian/ stretch/main libmath-vec-perl all 1.01-3 [17.8 kB] Get:518 http://deb.debian.org/debian/ stretch/main libmiglayout-java all 4.2-3 [97.3 kB] Get:519 http://deb.debian.org/debian/ stretch/main libmime-tools-perl all 5.508-1 [212 kB] Get:520 http://deb.debian.org/debian/ stretch/main libmldbm-perl all 2.05-2 [18.4 kB] Get:521 http://deb.debian.org/debian/ stretch/main libmng1 amd64 1.0.10+dfsg-3.1+b5 [211 kB] Get:522 http://deb.debian.org/debian/ stretch/main libmodule-build-perl all 0.422000-1 [259 kB] Get:523 http://deb.debian.org/debian/ stretch/main libmodule-pluggable-perl all 5.2-1 [25.7 kB] Get:524 http://deb.debian.org/debian/ stretch/main libmodule-signature-perl all 0.81-1 [30.1 kB] Get:525 http://deb.debian.org/debian/ stretch/main libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:526 http://deb.debian.org/debian/ stretch/main libmpfr4 amd64 3.1.5-1 [556 kB] Get:527 http://deb.debian.org/debian/ stretch/main libmysql-java all 5.1.49-0+deb9u1 [1051 kB] Get:528 http://deb.debian.org/debian/ stretch/main libnet-http-perl all 6.12-1 [23.8 kB] Get:529 http://deb.debian.org/debian/ stretch/main libnotify4 amd64 0.7.7-2 [21.9 kB] Get:530 http://deb.debian.org/debian/ stretch/main libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:531 http://deb.debian.org/debian/ stretch/main libole-storage-lite-perl all 0.19-1+deb9u1 [23.4 kB] Get:532 http://deb.debian.org/debian/ stretch/main liborc-0.4-0 amd64 1:0.4.26-2 [140 kB] Get:533 http://deb.debian.org/debian/ stretch/main liboro-java all 2.0.8a-12 [69.2 kB] Get:534 http://deb.debian.org/debian/ stretch/main libpackage-constants-perl all 0.06-1 [6248 B] Get:535 http://deb.debian.org/debian/ stretch/main libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:536 http://deb.debian.org/debian/ stretch/main libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:537 http://deb.debian.org/debian/ stretch/main libpathplan4 amd64 2.38.0-17 [62.8 kB] Get:538 http://deb.debian.org/debian/ stretch/main libpcsclite1 amd64 1.8.20-1 [56.5 kB] Get:539 http://deb.debian.org/debian/ stretch/main libperl4-corelibs-perl all 0.003-2+deb9u1 [38.0 kB] Get:540 http://deb.debian.org/debian/ stretch/main libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:541 http://deb.debian.org/debian/ stretch/main libpod-latex-perl all 0.61-2 [31.6 kB] Get:542 http://deb.debian.org/debian/ stretch/main libpolkit-backend-1-0 amd64 0.105-18+deb9u1 [45.7 kB] Get:543 http://deb.debian.org/debian/ stretch/main libpolkit-agent-1-0 amd64 0.105-18+deb9u1 [24.4 kB] Get:544 http://deb.debian.org/debian/ stretch/main libpolkit-gobject-1-0 amd64 0.105-18+deb9u1 [43.8 kB] Get:545 http://deb.debian.org/debian/ stretch/main policykit-1 amd64 0.105-18+deb9u1 [63.5 kB] Get:546 http://deb.debian.org/debian/ stretch/main libpotrace0 amd64 1.13-3 [24.9 kB] Get:547 http://deb.debian.org/debian/ stretch/main libreadonly-perl all 2.050-1 [22.7 kB] Get:548 http://deb.debian.org/debian/ stretch/main libregexp-common-perl all 2016060801-1 [178 kB] Get:549 http://deb.debian.org/debian/ stretch/main libsoup2.4-1 amd64 2.56.0-2+deb9u2 [296 kB] Get:550 http://deb.debian.org/debian/ stretch/main libsoup-gnome2.4-1 amd64 2.56.0-2+deb9u2 [16.4 kB] Get:551 http://deb.debian.org/debian/ stretch/main librest-0.7-0 amd64 0.8.0-2 [33.0 kB] Get:552 http://deb.debian.org/debian/ stretch/main librsvg2-common amd64 2.40.16-1+b1 [194 kB] Get:553 http://deb.debian.org/debian/ stretch/main librsvg2-2 amd64 2.40.16-1+b1 [281 kB] Get:554 http://deb.debian.org/debian/ stretch/main libsane-extras amd64 1.0.22.4 [52.8 kB] Get:555 http://deb.debian.org/debian/ stretch/main libsane-extras-common amd64 1.0.22.4 [12.4 kB] Get:556 http://deb.debian.org/debian/ stretch/main libsctp1 amd64 1.0.17+dfsg-1+b1 [28.1 kB] Get:557 http://deb.debian.org/debian/ stretch/main libsdl1.2debian amd64 1.2.15+dfsg1-4 [185 kB] Get:558 http://deb.debian.org/debian/ stretch/main libsigsegv2 amd64 2.10-5 [28.9 kB] Get:559 http://deb.debian.org/debian/ stretch/main libsndfile1 amd64 1.0.27-3 [248 kB] Get:560 http://deb.debian.org/debian/ stretch/main libsnp-sites1 amd64 2.3.2-1 [11.1 kB] Get:561 http://deb.debian.org/debian/ stretch/main libsoap-lite-perl all 1.20-1 [259 kB] Get:562 http://deb.debian.org/debian/ stretch/main libwww-perl all 6.15-1 [195 kB] Get:563 http://deb.debian.org/debian/ stretch/main libsoftware-license-perl all 0.103012-1 [112 kB] Get:564 http://deb.debian.org/debian/ stretch/main libsprng2 amd64 2.0a-10 [75.6 kB] Get:565 http://deb.debian.org/debian/ stretch/main libsqlite0 amd64 2.8.17-14 [164 kB] Get:566 http://deb.debian.org/debian/ stretch/main libsquizz amd64 0.99c+dfsg-1 [265 kB] Get:567 http://deb.debian.org/debian/ stretch/main libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:568 http://deb.debian.org/debian/ stretch/main libstatistics-descriptive-perl all 3.0612-1 [41.9 kB] Get:569 http://deb.debian.org/debian/ stretch/main libsvg-perl all 2.64-1 [69.8 kB] Get:570 http://deb.debian.org/debian/ stretch/main libsvm3 amd64 3.21+ds-1.1 [41.0 kB] Get:571 http://deb.debian.org/debian/ stretch/main libsynctex1 amd64 2016.20160513.41080.dfsg-2+deb9u1 [64.9 kB] Get:572 http://deb.debian.org/debian/ stretch/main libtcl8.5 amd64 8.5.19-2+b1 [743 kB] Get:573 http://deb.debian.org/debian/ stretch/main libterm-ui-perl all 0.46-1 [19.4 kB] Get:574 http://deb.debian.org/debian/ stretch/main libtest-pod-perl all 1.51-1 [14.7 kB] Get:575 http://deb.debian.org/debian/ stretch/main libtext-format-perl all 0.60-1 [20.0 kB] Get:576 http://deb.debian.org/debian/ stretch/main libtheora0 amd64 1.1.1+dfsg.1-14+b1 [177 kB] Get:577 http://deb.debian.org/debian/ stretch/main libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:578 http://deb.debian.org/debian/ stretch/main libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:579 http://deb.debian.org/debian/ stretch/main libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:580 http://deb.debian.org/debian/ stretch/main libtk8.5 amd64 8.5.19-1+b1 [750 kB] Get:581 http://deb.debian.org/debian/ stretch/main libtree-dagnode-perl all 1.29-1 [60.6 kB] Get:582 http://deb.debian.org/debian/ stretch/main libtry-tiny-perl all 0.28-1 [22.7 kB] Get:583 http://deb.debian.org/debian/ stretch/main libunwind8 amd64 1.1-4.1 [48.7 kB] Get:584 http://deb.debian.org/debian/ stretch/main libutempter0 amd64 1.1.6-3 [7812 B] Get:585 http://deb.debian.org/debian/ stretch/main libv4l-0 amd64 1.12.3-1 [85.5 kB] Get:586 http://deb.debian.org/debian/ stretch/main libv4lconvert0 amd64 1.12.3-1 [120 kB] Get:587 http://deb.debian.org/debian/ stretch/main libvisual-0.4-0 amd64 0.4.0-10 [132 kB] Get:588 http://deb.debian.org/debian/ stretch/main libxml-simple-perl all 2.22-1 [71.8 kB] Get:589 http://deb.debian.org/debian/ stretch/main libvm-ec2-perl all 1.28-2 [768 kB] Get:590 http://deb.debian.org/debian/ stretch/main libvte9 amd64 1:0.28.2-5+b2 [618 kB] Get:591 http://deb.debian.org/debian/ stretch/main libwayland-client0 amd64 1.12.0-1+deb9u1 [25.1 kB] Get:592 http://deb.debian.org/debian/ stretch/main libwayland-cursor0 amd64 1.12.0-1+deb9u1 [13.5 kB] Get:593 http://deb.debian.org/debian/ stretch/main libx11-protocol-perl all 0.56-7 [150 kB] Get:594 http://deb.debian.org/debian/ stretch/main libxcb-render0 amd64 1.12-1 [105 kB] Get:595 http://deb.debian.org/debian/ stretch/main libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:596 http://deb.debian.org/debian/ stretch/main libxcursor1 amd64 1:1.1.14-1+deb9u2 [34.9 kB] Get:597 http://deb.debian.org/debian/ stretch/main libxdot4 amd64 2.38.0-17 [55.6 kB] Get:598 http://deb.debian.org/debian/ stretch/main libxkbcommon0 amd64 0.7.1-2~deb9u1 [122 kB] Get:599 http://deb.debian.org/debian/ stretch/main libxml-dom-perl all 1.44-2 [179 kB] Get:600 http://deb.debian.org/debian/ stretch/main libxml-dom-xpath-perl all 0.14-2 [9622 B] Get:601 http://deb.debian.org/debian/ stretch/main libxml-sax-writer-perl all 0.56-1 [23.7 kB] Get:602 http://deb.debian.org/debian/ stretch/main libxslt1.1 amd64 1.1.29-2.1+deb9u2 [233 kB] Get:603 http://deb.debian.org/debian/ stretch/main libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:604 http://deb.debian.org/debian/ stretch/main libyaml-tiny-perl all 1.70-1 [32.0 kB] Get:605 http://deb.debian.org/debian/ stretch/main libzzip-0-13 amd64 0.13.62-3.2~deb9u1 [56.1 kB] Get:606 http://deb.debian.org/debian/ stretch/main lksctp-tools amd64 1.0.17+dfsg-1+b1 [64.5 kB] Get:607 http://deb.debian.org/debian/ stretch/main loki amd64 2.4.7.4-6+b1 [359 kB] Get:608 http://deb.debian.org/debian/ stretch/main libgenometools0 amd64 1.5.9+ds-4 [1775 kB] Get:609 http://deb.debian.org/debian/ stretch/main ltrsift amd64 1.0.2-7 [104 kB] Get:610 http://deb.debian.org/debian/ stretch/main macs amd64 2.1.1.20160309-1 [1011 kB] Get:611 http://deb.debian.org/debian/ stretch/main mafft amd64 7.307-1 [889 kB] Get:612 http://deb.debian.org/debian/ stretch/main manpages-dev all 4.10-2 [2145 kB] Get:613 http://deb.debian.org/debian/ stretch/main melting amd64 4.3.1+dfsg-2+b1 [663 kB] Get:614 http://deb.debian.org/debian/ stretch/main metastudent all 2.0.1-4 [5979 kB] Get:615 http://deb.debian.org/debian/ stretch/main metastudent-data all 2.0.1-2 [225 MB] Get:616 http://deb.debian.org/debian/ stretch/main metastudent-data-2 all 1.0.0-2 [227 kB] Get:617 http://deb.debian.org/debian/ stretch/main nast-ier amd64 20101212+dfsg1-1+b1 [20.9 kB] Get:618 http://deb.debian.org/debian/ stretch/main wigeon all 20101212+dfsg1-1 [29.8 kB] Get:619 http://deb.debian.org/debian/ stretch/main microbiomeutil all 20101212+dfsg1-1 [19.0 kB] Get:620 http://deb.debian.org/debian/ stretch/main mipe all 1.1-5 [62.4 kB] Get:621 http://deb.debian.org/debian/ stretch/main mknfonts.tool amd64 0.5-11+b5 [15.2 kB] Get:622 http://deb.debian.org/debian/ stretch/main mlv-smile amd64 1.47-4+b1 [190 kB] Get:623 http://deb.debian.org/debian/ stretch/main muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:624 http://deb.debian.org/debian/ stretch/main mysql-common all 5.8+1.0.2 [5608 B] Get:625 http://deb.debian.org/debian/ stretch/main ncoils amd64 2002-4+b1 [21.4 kB] Get:626 http://deb.debian.org/debian/ stretch/main njplot amd64 2.4-7 [95.3 kB] Get:627 http://deb.debian.org/debian/ stretch/main perlprimer all 1.2.3-1 [96.7 kB] Get:628 http://deb.debian.org/debian/ stretch/main phylip amd64 1:3.696+dfsg-5 [942 kB] Get:629 http://deb.debian.org/debian/ stretch/main python-tk amd64 2.7.13-1 [27.4 kB] Get:630 http://deb.debian.org/debian/ stretch/main plasmidomics all 0.2.0-5 [6844 B] Get:631 http://deb.debian.org/debian/ stretch/main po-debconf all 1.0.20 [247 kB] Get:632 http://deb.debian.org/debian/ stretch/main poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:633 http://deb.debian.org/debian/ stretch/main prerex amd64 6.5.3-1+b2 [600 kB] Get:634 http://deb.debian.org/debian/ stretch/main proalign amd64 0.603-2 [149 kB] Get:635 http://deb.debian.org/debian/ stretch/main proda amd64 1.0-10 [60.1 kB] Get:636 http://deb.debian.org/debian/ stretch/main prodigal amd64 1:2.6.3-1+b1 [714 kB] Get:637 http://deb.debian.org/debian/ stretch/main ps2eps amd64 1.68+binaryfree-2 [37.9 kB] Get:638 http://deb.debian.org/debian/ stretch/main python-biopython-doc all 1.68+dfsg-3 [11.8 MB] Get:639 http://deb.debian.org/debian/ stretch/main python-cairo amd64 1.8.8-2.2 [42.5 kB] Get:640 http://deb.debian.org/debian/ stretch/main python-pkg-resources all 33.1.1-1 [166 kB] Get:641 http://deb.debian.org/debian/ stretch/main python-chardet all 2.3.0-2 [96.0 kB] Get:642 http://deb.debian.org/debian/ stretch/main python-crypto amd64 2.6.1-7 [259 kB] Get:643 http://deb.debian.org/debian/ stretch/main python-six all 1.10.0-3 [14.4 kB] Get:644 http://deb.debian.org/debian/ stretch/main python-dateutil all 2.5.3-2 [51.3 kB] Get:645 http://deb.debian.org/debian/ stretch/main python-decorator all 4.0.11-1 [13.3 kB] Get:646 http://deb.debian.org/debian/ stretch/main python-egenix-mxtools amd64 3.2.9-1 [78.0 kB] Get:647 http://deb.debian.org/debian/ stretch/main python-egenix-mxdatetime amd64 3.2.9-1 [72.2 kB] Get:648 http://deb.debian.org/debian/ stretch/main python-gobject-2 amd64 2.28.6-13 [289 kB] Get:649 http://deb.debian.org/debian/ stretch/main python-glade2 amd64 2.24.0-5.1 [43.4 kB] Get:650 http://deb.debian.org/debian/ stretch/main python-gtk2 amd64 2.24.0-5.1 [642 kB] Get:651 http://deb.debian.org/debian/ stretch/main python-gmpy amd64 1.17-3 [74.3 kB] Get:652 http://deb.debian.org/debian/ stretch/main python-imaging all 4.0.0-4+deb9u1 [50.5 kB] Get:653 http://deb.debian.org/debian/ stretch/main python-markupsafe amd64 0.23-3 [14.4 kB] Get:654 http://deb.debian.org/debian/ stretch/main python-jinja2 all 2.8-1 [111 kB] Get:655 http://deb.debian.org/debian/ stretch/main python-mako all 1.0.6+ds1-2 [62.1 kB] Get:656 http://deb.debian.org/debian/ stretch/main python-mpmath all 0.19-3 [402 kB] Get:657 http://deb.debian.org/debian/ stretch/main python-multipletau all 0.1.7+ds-1 [11.0 kB] Get:658 http://deb.debian.org/debian/ stretch/main python-nose all 1.3.7-2 [132 kB] Get:659 http://deb.debian.org/debian/ stretch/main python-pyglet all 1.1.4.dfsg-3 [736 kB] Get:660 http://deb.debian.org/debian/ stretch/main python-pygments all 2.2.0+dfsg-1 [590 kB] Get:661 http://deb.debian.org/debian/ stretch/main python-pyparsing all 2.1.10+dfsg1-1 [88.5 kB] Get:662 http://deb.debian.org/debian/ stretch/main python-pyrex all 0.9.9-1 [191 kB] Get:663 http://deb.debian.org/debian/ stretch/main python-pysqlite2 amd64 2.7.0-1 [35.0 kB] Get:664 http://deb.debian.org/debian/ stretch/main python-qcli amd64 0.1.1-1 [13.6 kB] Get:665 http://deb.debian.org/debian/ stretch/main python-renderpm amd64 3.3.0-2+deb9u1 [47.3 kB] Get:666 http://deb.debian.org/debian/ stretch/main python-sqlalchemy-ext amd64 1.0.15+ds1-1 [18.7 kB] Get:667 http://deb.debian.org/debian/ stretch/main python-sqlalchemy all 1.0.15+ds1-1 [646 kB] Get:668 http://deb.debian.org/debian/ stretch/main python-tz all 2016.7-0.3 [33.7 kB] Get:669 http://deb.debian.org/debian/ stretch/main python-wxversion all 3.0.2.0+dfsg-4 [114 kB] Get:670 http://deb.debian.org/debian/ stretch/main python-yaml amd64 3.12-1 [119 kB] Get:671 http://deb.debian.org/debian/ stretch/main python3-nose all 1.3.7-2 [132 kB] Get:672 http://deb.debian.org/debian/ stretch/main qtcore4-l10n all 4:4.8.7+dfsg-11 [662 kB] Get:673 http://deb.debian.org/debian/ stretch/main r-cran-fastcluster amd64 1.1.22-1 [179 kB] Get:674 http://deb.debian.org/debian/ stretch/main r-cran-permute all 0.9-4-1 [493 kB] Get:675 http://deb.debian.org/debian/ stretch/main r-doc-html all 3.3.3-1 [551 kB] Get:676 http://deb.debian.org/debian/ stretch/main raster3d amd64 3.0-3-2+b1 [168 kB] Get:677 http://deb.debian.org/debian/ stretch/main raxml amd64 8.2.9+dfsg-1+b1 [1278 kB] Get:678 http://deb.debian.org/debian/ stretch/main readseq amd64 1-11+b1 [56.1 kB] Get:679 http://deb.debian.org/debian/ stretch/main rename all 0.20-4 [12.5 kB] Get:680 http://deb.debian.org/debian/ stretch/main rnahybrid amd64 2.1.2-1+b1 [159 kB] Get:681 http://deb.debian.org/debian/ stretch/main rsync amd64 3.1.2-1+deb9u2 [393 kB] Get:682 http://deb.debian.org/debian/ stretch/main rtax all 0.984-5 [26.1 kB] Get:683 http://deb.debian.org/debian/ stretch/main rubygems-integration all 1.11 [4994 B] Get:684 http://deb.debian.org/debian/ stretch/main seqtk amd64 1.2-1 [28.6 kB] Get:685 http://deb.debian.org/debian/ stretch/main sibsim4 amd64 0.20-2+b1 [30.3 kB] Get:686 http://deb.debian.org/debian/ stretch/main sigma-align amd64 1.1.3-4+b1 [24.3 kB] Get:687 http://deb.debian.org/debian/ stretch/main sim4 amd64 0.0.20121010-4 [396 kB] Get:688 http://deb.debian.org/debian/ stretch/main smalt amd64 0.7.6-6 [112 kB] Get:689 http://deb.debian.org/debian/ stretch/main snp-sites amd64 2.3.2-1 [10.3 kB] Get:690 http://deb.debian.org/debian/ stretch/main soapdenovo amd64 1.05-3 [343 kB] Get:691 http://deb.debian.org/debian/ stretch/main sphinx-doc all 1.4.9-2 [1164 kB] Get:692 http://deb.debian.org/debian/ stretch/main squizz amd64 0.99c+dfsg-1 [31.2 kB] Get:693 http://deb.debian.org/debian/ stretch/main ssake all 3.8.4-1 [30.1 kB] Get:694 http://deb.debian.org/debian/ stretch/main ssl-cert all 1.0.39 [20.8 kB] Get:695 http://deb.debian.org/debian/ stretch/main tcl amd64 8.6.0+9 [5468 B] Get:696 http://deb.debian.org/debian/ stretch/main tcl8.6 amd64 8.6.6+dfsg-1+b1 [123 kB] Get:697 http://deb.debian.org/debian/ stretch/main tcllib all 1.18-dfsg-3 [4149 kB] Get:698 http://deb.debian.org/debian/ stretch/main tcpd amd64 7.6.q-26 [23.3 kB] Get:699 http://deb.debian.org/debian/ stretch/main tk amd64 8.6.0+9 [5506 B] Get:700 http://deb.debian.org/debian/ stretch/main tk8.6 amd64 8.6.6-1+b1 [71.8 kB] Get:701 http://deb.debian.org/debian/ stretch/main tk-table amd64 2.10-3 [117 kB] Get:702 http://deb.debian.org/debian/ stretch/main tklib all 0.6-3 [1022 kB] Get:703 http://deb.debian.org/debian/ stretch/main tm-align amd64 20160521+dfsg-2 [868 kB] Get:704 http://deb.debian.org/debian/ stretch/main tree-puzzle amd64 5.2-8+b3 [135 kB] Get:705 http://deb.debian.org/debian/ stretch/main tree-puzzle-doc all 5.2-8 [401 kB] Get:706 http://deb.debian.org/debian/ stretch/main trimmomatic all 0.36+dfsg-1 [116 kB] Get:707 http://deb.debian.org/debian/ stretch/main unzip amd64 6.0-21+deb9u2 [172 kB] Get:708 http://deb.debian.org/debian/ stretch/main velvet amd64 1.2.10+dfsg1-3+b1 [688 kB] Get:709 http://deb.debian.org/debian/ stretch/main velvetoptimiser all 2.2.5-5 [25.1 kB] Get:710 http://deb.debian.org/debian/ stretch/main wise amd64 2.4.1-19 [993 kB] Get:711 http://deb.debian.org/debian/ stretch/main wise-data all 2.4.1-19 [108 kB] Get:712 http://deb.debian.org/debian/ stretch/main x11-xserver-utils amd64 7.7+7+b1 [167 kB] Get:713 http://deb.debian.org/debian/ stretch/main xauth amd64 1:1.0.9-1+b2 [39.6 kB] Get:714 http://deb.debian.org/debian/ stretch/main xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:715 http://deb.debian.org/debian/ stretch/main xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:716 http://deb.debian.org/debian/ stretch/main xsltproc amd64 1.1.29-2.1+deb9u2 [120 kB] Get:717 http://deb.debian.org/debian/ stretch/main xterm amd64 327-2 [663 kB] Get:718 http://deb.debian.org/debian/ stretch/main zip amd64 3.0-11+b1 [234 kB] Get:719 http://deb.debian.org/debian/ stretch/main acedb-other amd64 4.9.39+dfsg.02-1 [16.8 kB] Get:720 http://deb.debian.org/debian/ stretch/main ant-contrib all 1.0~b3+svn177-9 [255 kB] Get:721 http://deb.debian.org/debian/ stretch/main bauble all 0.9.7-2.1 [577 kB] Get:722 http://deb.debian.org/debian/ stretch/main concavity amd64 0.1+dfsg.1-1 [295 kB] Get:723 http://deb.debian.org/debian/ stretch/main conservation-code all 20110309.0-5 [23.6 kB] Get:724 http://deb.debian.org/debian/ stretch/main disulfinder-data all 1.2.11-6 [1129 kB] Get:725 http://deb.debian.org/debian/ stretch/main fasttree amd64 2.1.9-1 [132 kB] Get:726 http://deb.debian.org/debian/ stretch/main fonts-stix all 1.1.1-4 [590 kB] Get:727 http://deb.debian.org/debian/ stretch/main icedtea-netx-common all 1.6.2-3.1+deb9u1 [1383 kB] Get:728 http://deb.debian.org/debian/ stretch/main libapache-mime4j-java all 0.7.2-4 [367 kB] Get:729 http://deb.debian.org/debian/ stretch/main libcbf0 amd64 0.9.2.2-1+b1 [147 kB] Get:730 http://deb.debian.org/debian/ stretch/main libcvector2 amd64 1.0.3.1-1.1+b2 [6058 B] Get:731 http://deb.debian.org/debian/ stretch/main libcneartree5 amd64 3.1.1-2.1+b2 [24.0 kB] Get:732 http://deb.debian.org/debian/ stretch/main libconfig-inifiles-perl all 2.94-1 [53.4 kB] Get:733 http://deb.debian.org/debian/ stretch/main libcqrlib2 amd64 1.1.2-2.1+b2 [13.9 kB] Get:734 http://deb.debian.org/debian/ stretch/main libflite1 amd64 2.0.0-release-3+b1 [12.9 MB] Get:735 http://deb.debian.org/debian/ stretch/main libhwloc5 amd64 1.11.5-1 [105 kB] Get:736 http://deb.debian.org/debian/ stretch/main ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:737 http://deb.debian.org/debian/ stretch/main libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:738 http://deb.debian.org/debian/ stretch/main libmpc3 amd64 1.0.3-1+b2 [39.9 kB] Get:739 http://deb.debian.org/debian/ stretch/main librg-exception-perl all 1.0.3-2 [3182 B] Get:740 http://deb.debian.org/debian/ stretch/main librg-reprof-bundle-perl all 1.0.1-4 [7479 kB] Get:741 http://deb.debian.org/debian/ stretch/main profphd-utils amd64 1.0.10-3+b1 [264 kB] Get:742 http://deb.debian.org/debian/ stretch/main librg-utils-perl all 1.0.43-4 [111 kB] Get:743 http://deb.debian.org/debian/ stretch/main libset-scalar-perl all 1.29-2 [31.4 kB] Get:744 http://deb.debian.org/debian/ stretch/main mpi-default-bin amd64 1.8 [4050 B] Get:745 http://deb.debian.org/debian/ stretch/main ncbi-seg amd64 0.0.20000620-3+b1 [78.7 kB] Get:746 http://deb.debian.org/debian/ stretch/main neobio all 0.0.20030929-2 [291 kB] Get:747 http://deb.debian.org/debian/ stretch/main profnet-norsnet amd64 1.0.22-4 [43.0 kB] Get:748 http://deb.debian.org/debian/ stretch/main norsnet all 1.0.17-2 [44.4 kB] Get:749 http://deb.debian.org/debian/ stretch/main norsp all 1.0.6-2 [283 kB] Get:750 http://deb.debian.org/debian/ stretch/main predictnls all 1.0.20-3 [1404 kB] Get:751 http://deb.debian.org/debian/ stretch/main profnet-bval amd64 1.0.22-4 [43.8 kB] Get:752 http://deb.debian.org/debian/ stretch/main profbval all 1.0.22-4 [60.5 kB] Get:753 http://deb.debian.org/debian/ stretch/main profnet-isis amd64 1.0.22-4 [105 kB] Get:754 http://deb.debian.org/debian/ stretch/main profisis all 1.0.11-3 [63.2 kB] Get:755 http://deb.debian.org/debian/ stretch/main profnet-chop amd64 1.0.22-4 [105 kB] Get:756 http://deb.debian.org/debian/ stretch/main profnet-con amd64 1.0.22-4 [105 kB] Get:757 http://deb.debian.org/debian/ stretch/main profnet-md amd64 1.0.22-4 [43.0 kB] Get:758 http://deb.debian.org/debian/ stretch/main profnet-prof amd64 1.0.22-4 [105 kB] Get:759 http://deb.debian.org/debian/ stretch/main profnet-snapfun amd64 1.0.22-4 [105 kB] Get:760 http://deb.debian.org/debian/ stretch/main profphd-net amd64 1.0.22-4 [141 kB] Get:761 http://deb.debian.org/debian/ stretch/main pvm amd64 3.4.6-1+b2 [167 kB] Get:762 http://deb.debian.org/debian/ stretch/main pynast all 1.2.2-2 [83.5 kB] Get:763 http://deb.debian.org/debian/ stretch/main python-cogent amd64 1.9-9 [1063 kB] Get:764 http://deb.debian.org/debian/ stretch/main reprof all 1.0.1-4 [17.8 kB] Get:765 http://deb.debian.org/debian/ stretch/main snap amd64 2013-11-29-6 [373 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 578 MB in 15s (36.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163252 files and directories currently installed.) Preparing to unpack .../base-files_9.9+deb9u13_amd64.deb ... Unpacking base-files (9.9+deb9u13) over (8+deb8u11) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up base-files (9.9+deb9u13) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Updating /etc/profile to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163255 files and directories currently installed.) Preparing to unpack .../libncursesw5-dev_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncursesw5-dev:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Replacing files in old package ncurses-bin (5.9+20140913-1+deb8u3) ... Preparing to unpack .../libncurses5-dev_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5-dev:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Replacing files in old package ncurses-bin (5.9+20140913-1+deb8u3) ... Preparing to unpack .../libtinfo-dev_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libtinfo-dev:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Preparing to unpack .../binutils_2.28-5_amd64.deb ... Unpacking binutils (2.28-5) over (2.25-5+deb8u1) ... Preparing to unpack .../libc6-dev_2.24-11+deb9u4_amd64.deb ... Unpacking libc6-dev:amd64 (2.24-11+deb9u4) over (2.19-18+deb8u10) ... Preparing to unpack .../libc-dev-bin_2.24-11+deb9u4_amd64.deb ... Unpacking libc-dev-bin (2.24-11+deb9u4) over (2.19-18+deb8u10) ... Preparing to unpack .../linux-libc-dev_4.9.228-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.9.228-1) over (3.16.56-1+deb8u1) ... Preparing to unpack .../libtinfo5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libtinfo5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for man-db (2.7.0.2-5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libtinfo5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163355 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncursesw5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libncursesw5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163355 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163355 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking ncurses-bin (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up ncurses-bin (6.0+20161126-1+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163354 files and directories currently installed.) Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-5_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-5) over (1:1.2.8.dfsg-2+b1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-5_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-5) over (1:1.2.8.dfsg-2+b1) ... Processing triggers for man-db (2.7.0.2-5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163352 files and directories currently installed.) Preparing to unpack .../libc6_2.24-11+deb9u4_amd64.deb ... Unpacking libc6:amd64 (2.24-11+deb9u4) over (2.19-18+deb8u10) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Setting up libc6:amd64 (2.24-11+deb9u4) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163353 files and directories currently installed.) Preparing to unpack .../libc-bin_2.24-11+deb9u4_amd64.deb ... Unpacking libc-bin (2.24-11+deb9u4) over (2.19-18+deb8u10) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163351 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.9+deb9u1_all.deb ... Unpacking sensible-utils (0.0.9+deb9u1) over (0.0.9+deb8u1) ... Processing triggers for mime-support (3.58) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up sensible-utils (0.0.9+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163351 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.1.1_amd64.deb ... Unpacking debianutils (4.8.1.1) over (4.4+b1) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up debianutils (4.8.1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163350 files and directories currently installed.) Preparing to unpack .../archives/bash_4.4-5_amd64.deb ... Unpacking bash (4.4-5) over (4.3-11+deb8u1) ... Processing triggers for man-db (2.7.0.2-5) ... Processing triggers for menu (2.1.47) ... Setting up bash (4.4-5) ... Installing new version of config file /etc/skel/.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode Processing triggers for menu (2.1.47) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163352 files and directories currently installed.) Preparing to unpack .../libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) over (0.7.0-2) ... Preparing to unpack .../bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) over (9.0.6) ... Preparing to unpack .../bsdutils_1%3a2.29.2-1+deb9u1_amd64.deb ... Unpacking bsdutils (1:2.29.2-1+deb9u1) over (1:2.25.2-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up bsdutils (1:2.29.2-1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163352 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3_amd64.deb ... Unpacking coreutils (8.26-3) over (8.23-4) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up coreutils (8.26-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163355 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1_amd64.deb ... Unpacking tar (1.29b-1.1) over (1.27.1-2+deb8u1) ... Processing triggers for mime-support (3.58) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up tar (1.29b-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163356 files and directories currently installed.) Preparing to unpack .../liblzma-dev_5.2.2-1.2+b1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.2.2-1.2+b1) over (5.1.1alpha+20120614-2+b3) ... Preparing to unpack .../liblzma5_5.2.2-1.2+b1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.2-1.2+b1) over (5.1.1alpha+20120614-2+b3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up liblzma5:amd64 (5.2.2-1.2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163357 files and directories currently installed.) Preparing to unpack .../libbz2-dev_1.0.6-8.1_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-8.1) over (1.0.6-7+b3) ... Preparing to unpack .../bzip2_1.0.6-8.1_amd64.deb ... Unpacking bzip2 (1.0.6-8.1) over (1.0.6-7+b3) ... Preparing to unpack .../libbz2-1.0_1.0.6-8.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-8.1) over (1.0.6-7+b3) ... Processing triggers for man-db (2.7.0.2-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libbz2-1.0:amd64 (1.0.6-8.1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163355 files and directories currently installed.) Preparing to unpack .../xz-utils_5.2.2-1.2+b1_amd64.deb ... Unpacking xz-utils (5.2.2-1.2+b1) over (5.1.1alpha+20120614-2+b3) ... Preparing to unpack .../libdpkg-perl_1.18.25_all.deb ... Unpacking libdpkg-perl (1.18.25) over (1.17.27) ... Preparing to unpack .../dpkg_1.18.25_amd64.deb ... Unpacking dpkg (1.18.25) over (1.17.27) ... Processing triggers for man-db (2.7.0.2-5) ... Setting up dpkg (1.18.25) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163356 files and directories currently installed.) Preparing to unpack .../dpkg-dev_1.18.25_all.deb ... Unpacking dpkg-dev (1.18.25) over (1.17.27) ... Preparing to unpack .../patch_2.7.5-1+deb9u2_amd64.deb ... Unpacking patch (2.7.5-1+deb9u2) over (2.7.5-1+deb8u1) ... Preparing to unpack .../make_4.1-9.1_amd64.deb ... Unpacking make (4.1-9.1) over (4.0-8.1) ... Preparing to unpack .../dash_0.5.8-2.4_amd64.deb ... Unpacking dash (0.5.8-2.4) over (0.5.7-4+b1) ... Processing triggers for menu (2.1.47) ... Setting up dash (0.5.8-2.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163337 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.5-3_amd64.deb ... Unpacking diffutils (1:3.5-3) over (1:3.3-1+b1) ... Setting up diffutils (1:3.5-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163337 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.4-2+deb9u1_amd64.deb ... Unpacking e2fslibs:amd64 (1.43.4-2+deb9u1) over (1.42.12-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up e2fslibs:amd64 (1.43.4-2+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163336 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.4-2+deb9u1_amd64.deb ... Unpacking e2fsprogs (1.43.4-2+deb9u1) over (1.42.12-2+b1) ... Setting up e2fsprogs (1.43.4-2+deb9u1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163338 files and directories currently installed.) Preparing to unpack .../archives/grep_2.27-2_amd64.deb ... Unpacking grep (2.27-2) over (2.20-4.1) ... Setting up grep (2.27-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163338 files and directories currently installed.) Preparing to unpack .../gzip_1.6-5+b1_amd64.deb ... Unpacking gzip (1.6-5+b1) over (1.6-4) ... Setting up gzip (1.6-5+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163339 files and directories currently installed.) Preparing to unpack .../hostname_3.18+b1_amd64.deb ... Unpacking hostname (3.18+b1) over (3.15) ... Setting up hostname (3.18+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163340 files and directories currently installed.) Preparing to unpack .../login_1%3a4.4-4.1_amd64.deb ... Unpacking login (1:4.4-4.1) over (1:4.2-3+deb8u4) ... Setting up login (1:4.4-4.1) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/securetty ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163340 files and directories currently installed.) Preparing to unpack .../libselinux1_2.6-3+b3_amd64.deb ... Unpacking libselinux1:amd64 (2.6-3+b3) over (2.3-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libselinux1:amd64 (2.6-3+b3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163341 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libsmartcols1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163341 files and directories currently installed.) Preparing to unpack .../mount_2.29.2-1+deb9u1_amd64.deb ... Unpacking mount (2.29.2-1+deb9u1) over (2.25.2-6) ... Setting up mount (2.29.2-1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163344 files and directories currently installed.) Preparing to unpack .../archives/sed_4.4-1_amd64.deb ... Unpacking sed (4.4-1) over (4.2.2-4+deb8u1) ... Setting up sed (4.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163345 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.227_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.227) over (0.192) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libdebconfclient0:amd64 (0.227) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163345 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.43_amd64.deb ... Unpacking base-passwd (3.5.43) over (3.5.37) ... Setting up base-passwd (3.5.43) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163345 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.0+20161126-1+deb9u2_all.deb ... Unpacking ncurses-base (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Setting up ncurses-base (6.0+20161126-1+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163346 files and directories currently installed.) Preparing to unpack .../systemd-sysv_232-25+deb9u12_amd64.deb ... Unpacking systemd-sysv (232-25+deb9u12) over (215-17+deb8u7) ... Setting up systemd-sysv (232-25+deb9u12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163346 files and directories currently installed.) Preparing to unpack .../libtext-wrapi18n-perl_0.06-7.1_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-7.1) over (0.06-7) ... Preparing to unpack .../debconf-i18n_1.5.61_all.deb ... Unpacking debconf-i18n (1.5.61) over (1.5.56+deb8u1) ... Preparing to unpack .../debconf_1.5.61_all.deb ... Unpacking debconf (1.5.61) over (1.5.56+deb8u1) ... Setting up debconf (1.5.61) ... Removing obsolete conffile /etc/bash_completion.d/debconf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163347 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.6.7-2_all.deb ... Unpacking libaudit-common (1:2.6.7-2) over (1:2.4-1) ... Setting up libaudit-common (1:2.6.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163347 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.7-3+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.7-3+b1) over (0.7.4-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcap-ng0:amd64 (0.7.7-3+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163348 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.6.7-2_amd64.deb ... Unpacking libaudit1:amd64 (1:2.6.7-2) over (1:2.4-1+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libaudit1:amd64 (1:2.6.7-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163347 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-3.6_amd64.deb ... Unpacking libpam0g:amd64 (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libpam0g:amd64 (1.1.8-3.6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163346 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-3.6_amd64.deb ... Unpacking libpam-modules-bin (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Setting up libpam-modules-bin (1.1.8-3.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163345 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.1.8-3.6_amd64.deb ... Unpacking libpam-modules:amd64 (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Setting up libpam-modules:amd64 (1.1.8-3.6) ... Installing new version of config file /etc/security/namespace.init ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163344 files and directories currently installed.) Preparing to unpack .../tasksel-data_3.39_all.deb ... Unpacking tasksel-data (3.39) over (3.31+deb8u1) ... Preparing to unpack .../archives/tasksel_3.39_all.deb ... Unpacking tasksel (3.39) over (3.31+deb8u1) ... Preparing to unpack .../mawk_1.3.3-17+b3_amd64.deb ... Unpacking mawk (1.3.3-17+b3) over (1.3.3-17) ... Preparing to unpack .../groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) over (1.22.2-8) ... Preparing to unpack .../libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) over (1.4.0-1) ... Preparing to unpack .../man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) over (2.7.0.2-5) ... Preparing to unpack .../libexpat1-dev_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.0-2+deb9u3) over (2.1.0-6+deb8u4) ... Preparing to unpack .../libexpat1_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u3) over (2.1.0-6+deb8u4) ... Preparing to unpack .../fonts-texgyre_20160520-1_all.deb ... Unpacking fonts-texgyre (20160520-1) over (20140520-1) ... Preparing to unpack .../archives/ucf_3.0036_all.deb ... Unpacking ucf (3.0036) over (3.0030) ... Preparing to unpack .../fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) over (2.34-1) ... Preparing to unpack .../fonts-liberation_1%3a1.07.4-2_all.deb ... Unpacking fonts-liberation (1:1.07.4-2) over (1.07.4-1) ... Preparing to unpack .../fontconfig-config_2.11.0-6.7_all.deb ... Unpacking fontconfig-config (2.11.0-6.7) over (2.11.0-6.3+deb8u1) ... Preparing to unpack .../libfontconfig1_2.11.0-6.7+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.7+b1) over (2.11.0-6.3+deb8u1) ... Preparing to unpack .../fontconfig_2.11.0-6.7+b1_amd64.deb ... Unpacking fontconfig (2.11.0-6.7+b1) over (2.11.0-6.3+deb8u1) ... Preparing to unpack .../libx11-doc_2%3a1.6.4-3+deb9u1_all.deb ... Unpacking libx11-doc (2:1.6.4-3+deb9u1) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libx11-data_2%3a1.6.4-3+deb9u1_all.deb ... Unpacking libx11-data (2:1.6.4-3+deb9u1) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../xkb-data_2.19-1+deb9u1_all.deb ... Unpacking xkb-data (2.19-1+deb9u1) over (2.12-1) ... Preparing to unpack .../libxdmcp-dev_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp-dev:amd64 (1:1.1.2-3) over (1:1.1.1-1+b1) ... Preparing to unpack .../libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) over (1:1.1.1-1+b1) ... Preparing to unpack .../x11proto-core-dev_7.0.31-1_all.deb ... Unpacking x11proto-core-dev (7.0.31-1) over (7.0.26-1) ... Preparing to unpack .../libxcb1-dev_1.12-1_amd64.deb ... Unpacking libxcb1-dev:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxcb1_1.12-1_amd64.deb ... Unpacking libxcb1:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libx11-dev_2%3a1.6.4-3+deb9u1_amd64.deb ... Unpacking libx11-dev:amd64 (2:1.6.4-3+deb9u1) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libx11-6_2%3a1.6.4-3+deb9u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3+deb9u1) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../x11proto-input-dev_2.3.2-1_all.deb ... Unpacking x11proto-input-dev (2.3.2-1) over (2.3.1-1) ... Preparing to unpack .../x11proto-kb-dev_1.0.7-1_all.deb ... Unpacking x11proto-kb-dev (1.0.7-1) over (1.0.6-2) ... Preparing to unpack .../xtrans-dev_1.3.5-1_all.deb ... Unpacking xtrans-dev (1.3.5-1) over (1.3.4-1) ... Preparing to unpack .../libice-dev_2%3a1.0.9-2_amd64.deb ... Unpacking libice-dev:amd64 (2:1.0.9-2) over (2:1.0.9-1+b1) ... Preparing to unpack .../lsb-base_9.20161125_all.deb ... Unpacking lsb-base (9.20161125) over (4.1+Debian13+nmu1) ... Processing triggers for menu (2.1.47) ... Processing triggers for mime-support (3.58) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up lsb-base (9.20161125) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163399 files and directories currently installed.) Preparing to unpack .../x11-common_1%3a7.7+19_all.deb ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking x11-common (1:7.7+19) over (1:7.7+7) ... Preparing to unpack .../libice6_2%3a1.0.9-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-2) over (2:1.0.9-1+b1) ... Preparing to unpack .../libsepol1_2.6-2_amd64.deb ... Unpacking libsepol1:amd64 (2.6-2) over (2.3-2) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libsepol1:amd64 (2.6-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163396 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.6-2_all.deb ... Unpacking libsemanage-common (2.6-2) over (2.3-1) ... Setting up libsemanage-common (2.6-2) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163396 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.6-2_amd64.deb ... Unpacking libsemanage1:amd64 (2.6-2) over (2.3-1+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libsemanage1:amd64 (2.6-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163395 files and directories currently installed.) Preparing to unpack .../libustr-1.0-1_1.0.4-6_amd64.deb ... Unpacking libustr-1.0-1:amd64 (1.0.4-6) over (1.0.4-3+b2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libustr-1.0-1:amd64 (1.0.4-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163390 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1_amd64.deb ... Unpacking passwd (1:4.4-4.1) over (1:4.2-3+deb8u4) ... Setting up passwd (1:4.4-4.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163399 files and directories currently installed.) Preparing to unpack .../libuuid1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libuuid1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libuuid1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163399 files and directories currently installed.) Preparing to unpack .../libsm-dev_2%3a1.2.2-1+b3_amd64.deb ... Unpacking libsm-dev:amd64 (2:1.2.2-1+b3) over (2:1.2.2-1+b1) ... Preparing to unpack .../libsm6_2%3a1.2.2-1+b3_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b3) over (2:1.2.2-1+b1) ... Preparing to unpack .../libxt-dev_1%3a1.1.5-1_amd64.deb ... Unpacking libxt-dev:amd64 (1:1.1.5-1) over (1:1.1.4-1+b1) ... Preparing to unpack .../libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) over (1:1.1.4-1+b1) ... Preparing to unpack .../libaudio2_1.9.4-5+b1_amd64.deb ... Unpacking libaudio2:amd64 (1.9.4-5+b1) over (1.9.4-3) ... Preparing to unpack .../libdconf1_0.26.0-2+b1_amd64.deb ... Unpacking libdconf1:amd64 (0.26.0-2+b1) over (0.22.0-1) ... Preparing to unpack .../dconf-gsettings-backend_0.26.0-2+b1_amd64.deb ... Unpacking dconf-gsettings-backend:amd64 (0.26.0-2+b1) over (0.22.0-1) ... Preparing to unpack .../dconf-service_0.26.0-2+b1_amd64.deb ... Unpacking dconf-service (0.26.0-2+b1) over (0.22.0-1) ... Preparing to unpack .../libffi6_3.2.1-6_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-6) over (3.1-2+deb8u1) ... Preparing to unpack .../libblkid1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libblkid1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libblkid1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163396 files and directories currently installed.) Preparing to unpack .../libmount1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libmount1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libmount1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163396 files and directories currently installed.) Preparing to unpack .../libglib2.0-0_2.50.3-2+deb9u2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.50.3-2+deb9u2) over (2.42.1-1+b1) ... Preparing to unpack .../liblqr-1-0_0.4.2-2+b2_amd64.deb ... Unpacking liblqr-1-0:amd64 (0.4.2-2+b2) over (0.4.2-2) ... Preparing to unpack .../poppler-data_0.4.7-8_all.deb ... Unpacking poppler-data (0.4.7-8) over (0.4.7-1) ... Preparing to unpack .../sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) over (1.26+nmu4) ... Preparing to unpack .../archives/adduser_3.115_all.deb ... Unpacking adduser (3.115) over (3.113+nmu3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up adduser (3.115) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163395 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.26-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.26-2) over (1.17-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libgpg-error0:amd64 (1.26-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163396 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u3_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u3) over (1.6.3-2+deb8u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163396 files and directories currently installed.) Preparing to unpack .../gpgv_2.1.18-8~deb9u4_amd64.deb ... Unpacking gpgv (2.1.18-8~deb9u4) over (1.4.18-7+deb8u5) ... Setting up gpgv (2.1.18-8~deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163397 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2017.5+deb9u1_all.deb ... Unpacking debian-archive-keyring (2017.5+deb9u1) over (2017.5~deb8u1) ... Setting up debian-archive-keyring (2017.5+deb9u1) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-wheezy-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-wheezy-stable.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163398 files and directories currently installed.) Preparing to unpack .../libkmod2_23-2_amd64.deb ... Unpacking libkmod2:amd64 (23-2) over (18-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libkmod2:amd64 (23-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163398 files and directories currently installed.) Preparing to unpack .../libslang2_2.3.1-5_amd64.deb ... Unpacking libslang2:amd64 (2.3.1-5) over (2.3.0-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libslang2:amd64 (2.3.1-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163399 files and directories currently installed.) Preparing to unpack .../readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) over (6.3-8) ... Setting up readline-common (7.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163400 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.4.47-2+b2_amd64.deb ... Unpacking libattr1:amd64 (1:2.4.47-2+b2) over (1:2.4.47-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libattr1:amd64 (1:2.4.47-2+b2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163401 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-3+b1_amd64.deb ... Unpacking libacl1:amd64 (2.2.52-3+b1) over (2.2.52-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libacl1:amd64 (2.2.52-3+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163402 files and directories currently installed.) Preparing to unpack .../acl_2.2.52-3+b1_amd64.deb ... Unpacking acl (2.2.52-3+b1) over (2.2.52-2) ... Setting up acl (2.2.52-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163400 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.4-2+deb9u1_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u1) over (1.42.12-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163399 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.1.8-3.6_all.deb ... Unpacking libpam-runtime (1.1.8-3.6) over (1.1.8-3.1+deb8u2) ... Setting up libpam-runtime (1.1.8-3.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163399 files and directories currently installed.) Preparing to unpack .../libss2_1.43.4-2+deb9u1_amd64.deb ... Unpacking libss2:amd64 (1.43.4-2+deb9u1) over (1.42.12-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libss2:amd64 (1.43.4-2+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163398 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.24-11+deb9u4_amd64.deb ... Unpacking multiarch-support (2.24-11+deb9u4) over (2.19-18+deb8u10) ... Setting up multiarch-support (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163398 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.25-1) over (1:2.24-8) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcap2:amd64 (1:2.25-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163398 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-12+deb9u1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28-12+deb9u1) over (5.3.28-9+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libdb5.3:amd64 (5.3.28-12+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163398 files and directories currently installed.) Preparing to unpack .../dmsetup_2%3a1.02.137-2_amd64.deb ... Unpacking dmsetup (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.137-2_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.137-2) ... Setting up dmsetup (2:1.02.137-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163402 files and directories currently installed.) Preparing to unpack .../insserv_1.14.0-5.4+b1_amd64.deb ... Unpacking insserv (1.14.0-5.4+b1) over (1.14.0-5) ... Setting up insserv (1.14.0-5.4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163404 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.25-1_amd64.deb ... Unpacking libcap2-bin (1:2.25-1) over (1:2.24-8) ... Setting up libcap2-bin (1:2.25-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163405 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.3-4_amd64.deb ... Unpacking libcryptsetup4:amd64 (2:1.7.3-4) over (2:1.6.6-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcryptsetup4:amd64 (2:1.7.3-4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163405 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-30_amd64.deb ... Unpacking libusb-0.1-4:amd64 (2:0.1.12-30) over (2:0.1.12-25) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libusb-0.1-4:amd64 (2:0.1.12-30) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163404 files and directories currently installed.) Preparing to unpack .../startpar_0.59-3.1_amd64.deb ... Unpacking startpar (0.59-3.1) over (0.59-3) ... Setting up startpar (0.59-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163404 files and directories currently installed.) Preparing to unpack .../dmidecode_3.0-4_amd64.deb ... Unpacking dmidecode (3.0-4) over (2.12-3) ... Preparing to unpack .../libpopt0_1.16-10+b2_amd64.deb ... Unpacking libpopt0:amd64 (1.16-10+b2) over (1.16-10) ... Preparing to unpack .../update-inetd_4.44_all.deb ... Unpacking update-inetd (4.44) over (4.43) ... Preparing to unpack .../archives/netbase_5.4_all.deb ... Unpacking netbase (5.4) over (5.3) ... Preparing to unpack .../gettext-base_0.19.8.1-2+deb9u1_amd64.deb ... Unpacking gettext-base (0.19.8.1-2+deb9u1) over (0.19.3-2) ... Preparing to unpack .../krb5-locales_1.15-1+deb9u1_all.deb ... Unpacking krb5-locales (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libedit2_3.1-20160903-3_amd64.deb ... Unpacking libedit2:amd64 (3.1-20160903-3) over (3.1-20140620-2) ... Preparing to unpack .../libkeyutils1_1.5.9-9_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9) over (1.5.9-5+b1) ... Preparing to unpack .../libgssapi-krb5-2_1.15-1+deb9u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libkrb5-3_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libk5crypto3_1.15-1+deb9u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libkrb5support0_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.15-1+deb9u1) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libidn11_1.33-1+deb9u1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1+deb9u1) over (1.29-1+deb8u2) ... Preparing to unpack .../libp11-kit0_0.23.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2) over (0.20.7-1) ... Preparing to unpack .../libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) over (2.1.26.dfsg1-13+deb8u1) ... Preparing to unpack .../libtasn1-6_4.10-1.1+deb9u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.10-1.1+deb9u1) over (4.2-3+deb8u3) ... Preparing to unpack .../libwrap0_7.6.q-26_amd64.deb ... Unpacking libwrap0:amd64 (7.6.q-26) over (7.6.q-25) ... Preparing to unpack .../manpages_4.10-2_all.deb ... Unpacking manpages (4.10-2) over (3.74-1) ... Preparing to unpack .../mime-support_3.60_all.deb ... Unpacking mime-support (3.60) over (3.58) ... Preparing to unpack .../abacas_1.3.1-3_all.deb ... Unpacking abacas (1.3.1-3) over (1.3.1-2) ... Preparing to unpack .../libbytecode-java_0.92.svn.20090106-2_all.deb ... Unpacking libbytecode-java (0.92.svn.20090106-2) over (0.92.svn.20090106-1.1) ... Preparing to unpack .../libcommons-cli-java_1.3.1-3_all.deb ... Unpacking libcommons-cli-java (1.3.1-3) over (1.2-3) ... Preparing to unpack .../libcommons-collections3-java_3.2.2-1_all.deb ... Unpacking libcommons-collections3-java (3.2.2-1) over (3.2.1-7+deb8u1) ... Preparing to unpack .../libcommons-pool-java_1.6-3_all.deb ... Unpacking libcommons-pool-java (1.6-3) over (1.6-2) ... Preparing to unpack .../alien-hunter_1.7-5_all.deb ... Unpacking alien-hunter (1.7-5) over (1.7-3) ... Preparing to unpack .../ant-optional_1.9.9-1+deb9u1_all.deb ... Unpacking ant-optional (1.9.9-1+deb9u1) over (1.9.4-3) ... Preparing to unpack .../ant_1.9.9-1+deb9u1_all.deb ... Unpacking ant (1.9.9-1+deb9u1) over (1.9.4-3) ... Preparing to unpack .../libmaloc1_0.2-3.1_amd64.deb ... Unpacking libmaloc1 (0.2-3.1) over (0.2-3) ... Preparing to unpack .../apbs_1.4-1+b1_amd64.deb ... Unpacking apbs (1.4-1+b1) over (1.4-1) ... Preparing to unpack .../aragorn_1.2.38-1_amd64.deb ... Unpacking aragorn (1.2.38-1) over (1.2.36-4) ... Preparing to unpack .../libblas-dev_3.7.0-2_amd64.deb ... Unpacking libblas-dev (3.7.0-2) over (1.2.20110419-10) ... Preparing to unpack .../libblas-common_3.7.0-2_amd64.deb ... Unpacking libblas-common (3.7.0-2) over (1.2.20110419-10) ... Preparing to unpack .../libatlas3-base_3.10.3-1+b1_amd64.deb ... Unpacking libatlas3-base (3.10.3-1+b1) over (3.10.2-7) ... Preparing to unpack .../libblas3_3.7.0-2_amd64.deb ... Unpacking libblas3 (3.7.0-2) over (1.2.20110419-10) ... Preparing to unpack .../liblapack-dev_3.7.0-2_amd64.deb ... Unpacking liblapack-dev (3.7.0-2) over (3.5.0-4) ... Preparing to unpack .../liblapack3_3.7.0-2_amd64.deb ... Unpacking liblapack3 (3.7.0-2) over (3.5.0-4) ... Preparing to unpack .../python-numpy_1%3a1.12.1-3_amd64.deb ... Unpacking python-numpy (1:1.12.1-3) over (1:1.8.2-2) ... Preparing to unpack .../archives/arden_1.0-3_all.deb ... Unpacking arden (1.0-3) over (1.0-1) ... Preparing to unpack .../dictionaries-common_1.27.2_all.deb ... Leaving 'diversion of /usr/share/dict/words to /usr/share/dict/words.pre-dictionaries-common by dictionaries-common' Unpacking dictionaries-common (1.27.2) over (1.23.17) ... Preparing to unpack .../aspell-en_2016.11.20-0-0.1_all.deb ... Unpacking aspell-en (2016.11.20-0-0.1) over (7.1-0-1.1) ... Preparing to unpack .../libunistring0_0.9.6+really0.9.3-0.1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.6+really0.9.3-0.1) over (0.9.3-5.2+b1) ... Preparing to unpack .../libgettextpo-dev_0.19.8.1-2+deb9u1_amd64.deb ... Unpacking libgettextpo-dev:amd64 (0.19.8.1-2+deb9u1) over (0.19.3-2) ... Preparing to unpack .../libgettextpo0_0.19.8.1-2+deb9u1_amd64.deb ... Unpacking libgettextpo0:amd64 (0.19.8.1-2+deb9u1) over (0.19.3-2) ... Preparing to unpack .../libcroco3_0.6.11-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.11-3) over (0.6.8-3+b1) ... Preparing to unpack .../gettext_0.19.8.1-2+deb9u1_amd64.deb ... Unpacking gettext (0.19.8.1-2+deb9u1) over (0.19.3-2) ... Preparing to unpack .../autopoint_0.19.8.1-2+deb9u1_all.deb ... Unpacking autopoint (0.19.8.1-2+deb9u1) over (0.19.3-2) ... Preparing to unpack .../autotools-dev_20161112.1_all.deb ... Unpacking autotools-dev (20161112.1) over (20140911.1) ... Preparing to unpack .../binfmt-support_2.1.6-2_amd64.deb ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking binfmt-support (2.1.6-2) over (2.1.5-1) ... Preparing to unpack .../libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) over (0.13-1) ... Preparing to unpack .../bioperl_1.7.1-2_all.deb ... Unpacking bioperl (1.7.1-2) over (1.6.924-1) ... Preparing to unpack .../libbio-perl-perl_1.7.1-2_all.deb ... Unpacking libbio-perl-perl (1.7.1-2) over (1.6.924-1) ... Preparing to unpack .../biosquid_1.9g+cvs20050121-7_amd64.deb ... Unpacking biosquid (1.9g+cvs20050121-7) over (1.9g+cvs20050121-4) ... Preparing to unpack .../blends-common_0.6.96_all.deb ... Unpacking blends-common (0.6.96) over (0.6.92.2) ... Preparing to unpack .../libtcl8.6_8.6.6+dfsg-1+b1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.6+dfsg-1+b1) over (8.6.2+dfsg-2) ... Preparing to unpack .../libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) over (2:1.3.3-1) ... Preparing to unpack .../libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) over (1:0.9.8-1+b1) ... Preparing to unpack .../libxft2_2.3.2-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1+b2) over (2.3.2-1) ... Preparing to unpack .../libtk8.6_8.6.6-1+b1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.6-1+b1) over (8.6.2-1) ... Preparing to unpack .../blt_2.5.3+dfsg-3_amd64.deb ... Unpacking blt (2.5.3+dfsg-3) over (2.5.3+dfsg-1) ... Preparing to unpack .../tk8.6-blt2.5_2.5.3+dfsg-3_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-3) over (2.5.3+dfsg-1) ... Preparing to unpack .../boxshade_3.3.1-10_amd64.deb ... Unpacking boxshade (3.3.1-10) over (3.3.1-8) ... Preparing to unpack .../bwa_0.7.15-2+deb9u1_amd64.deb ... Unpacking bwa (0.7.15-2+deb9u1) over (0.7.10-1) ... Preparing to unpack .../bzip2-doc_1.0.6-8.1_all.deb ... Unpacking bzip2-doc (1.0.6-8.1) over (1.0.6-7) ... Preparing to unpack .../ca-certificates_20200601~deb9u1_all.deb ... Unpacking ca-certificates (20200601~deb9u1) over (20141019+deb8u3) ... Preparing to unpack .../libnspr4_2%3a4.12-6_amd64.deb ... Unpacking libnspr4:amd64 (2:4.12-6) over (2:4.12-1+debu8u1) ... Preparing to unpack .../libnss3_2%3a3.26.2-1.1+deb9u1_amd64.deb ... Unpacking libnss3:amd64 (2:3.26.2-1.1+deb9u1) over (2:3.26-1+debu8u3) ... Preparing to unpack .../ca-certificates-java_20170929~deb9u3_all.deb ... Unpacking ca-certificates-java (20170929~deb9u3) over (20140324) ... Preparing to unpack .../archives/cdbs_0.4.150_all.deb ... Unpacking cdbs (0.4.150) over (0.4.130+deb8u1) ... Preparing to unpack .../microbiomeutil-data_20101212+dfsg1-1_all.deb ... Unpacking microbiomeutil-data (20101212+dfsg1-1) over (20101212+dfsg-1) ... Preparing to unpack .../chimeraslayer_20101212+dfsg1-1_all.deb ... Unpacking chimeraslayer (20101212+dfsg1-1) over (20101212+dfsg-1) ... Preparing to unpack .../circos-tools_0.22-1_all.deb ... Unpacking circos-tools (0.22-1) over (0.18-1) ... Preparing to unpack .../clearcut_1.0.9-1+b1_amd64.deb ... Unpacking clearcut (1.0.9-1+b1) over (1.0.9-1) ... Preparing to unpack .../colord-data_1.3.3-2_all.deb ... Unpacking colord-data (1.3.3-2) over (1.2.1-1) ... Preparing to unpack .../cython_0.25.2-1_amd64.deb ... Unpacking cython (0.25.2-1) over (0.21.1-1) ... Preparing to unpack .../dh-python_2.20170125_all.deb ... Unpacking dh-python (2.20170125) over (1.20141111-2) ... Preparing to unpack .../dialign_2.2.1-8_amd64.deb ... Unpacking dialign (2.2.1-8) over (2.2.1-7) ... Preparing to unpack .../dialign-tx_1.0.2-9_amd64.deb ... Unpacking dialign-tx (1.0.2-9) over (1.0.2-7) ... Preparing to unpack .../dialign-tx-data_1.0.2-9_all.deb ... Unpacking dialign-tx-data (1.0.2-9) over (1.0.2-7) ... Preparing to unpack .../python-roman_2.0.0-2_all.deb ... Unpacking python-roman (2.0.0-2) over (2.0.0-1) ... Preparing to unpack .../python-docutils_0.13.1+dfsg-2_all.deb ... Unpacking python-docutils (0.13.1+dfsg-2) over (0.12+dfsg-1) ... Preparing to unpack .../archives/xml-core_0.17_all.deb ... Unpacking xml-core (0.17) over (0.13+nmu2) ... Preparing to unpack .../docutils-common_0.13.1+dfsg-2_all.deb ... Unpacking docutils-common (0.13.1+dfsg-2) over (0.12+dfsg-1) ... Preparing to unpack .../docutils-doc_0.13.1+dfsg-2_all.deb ... Unpacking docutils-doc (0.13.1+dfsg-2) over (0.12+dfsg-1) ... Preparing to unpack .../embassy-domainatrix_0.1.660-1_amd64.deb ... Unpacking embassy-domainatrix (0.1.660-1) over (0.1.650-1) ... Preparing to unpack .../embassy-domalign_0.1.660-1_amd64.deb ... Unpacking embassy-domalign (0.1.660-1) over (0.1.650-1) ... Preparing to unpack .../embassy-domsearch_1%3a0.1.660-1_amd64.deb ... Unpacking embassy-domsearch (1:0.1.660-1) over (1:0.1.650-1) ... Preparing to unpack .../exonerate_2.4.0-2_amd64.deb ... Unpacking exonerate (2.4.0-2) over (2.2.0-6) ... Preparing to unpack .../libfakeroot_1.21-3.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.21-3.1) over (1.20.2-1) ... Preparing to unpack .../fakeroot_1.21-3.1_amd64.deb ... Unpacking fakeroot (1.21-3.1) over (1.20.2-1) ... Preparing to unpack .../python3-pkg-resources_33.1.1-1_all.deb ... Unpacking python3-pkg-resources (33.1.1-1) over (5.5.1-1) ... Preparing to unpack .../fastaq_3.14.0-1_all.deb ... Unpacking fastaq (3.14.0-1) over (1.5.0-1) ... Preparing to unpack .../fastdnaml_1.2.2-11+b1_amd64.deb ... Unpacking fastdnaml (1.2.2-11+b1) over (1.2.2-10) ... Preparing to unpack .../fastjar_2%3a0.98-6+b1_amd64.deb ... Unpacking fastjar (2:0.98-6+b1) over (2:0.98-5) ... Preparing to unpack .../fastlink_4.1P-fix100+dfsg-1+b1_amd64.deb ... Unpacking fastlink (4.1P-fix100+dfsg-1+b1) over (4.1P-fix95-3) ... Preparing to unpack .../fitgcp_0.0.20150429-1_amd64.deb ... Unpacking fitgcp (0.0.20150429-1) over (0.0.20130418-2) ... Preparing to unpack .../fonts-circos-symbols_0.69.4+dfsg-1_all.deb ... Unpacking fonts-circos-symbols (0.69.4+dfsg-1) over (0.66-1) ... Preparing to unpack .../fonts-dejavu-extra_2.37-1_all.deb ... Unpacking fonts-dejavu-extra (2.37-1) over (2.34-1) ... Preparing to unpack .../fonts-dejavu_2.37-1_all.deb ... Unpacking fonts-dejavu (2.37-1) over (2.34-1) ... Preparing to unpack .../fonts-ebgaramond_0.016-1_all.deb ... Unpacking fonts-ebgaramond (0.016-1) over (0.015+git20130628-3) ... Preparing to unpack .../fonts-ebgaramond-extra_0.016-1_all.deb ... Unpacking fonts-ebgaramond-extra (0.016-1) over (0.015+git20130628-3) ... Preparing to unpack .../fonts-font-awesome_4.7.0~dfsg-1_all.deb ... Unpacking fonts-font-awesome (4.7.0~dfsg-1) over (4.2.0~dfsg-1) ... Preparing to unpack .../fonts-freefont-otf_20120503-6_all.deb ... Unpacking fonts-freefont-otf (20120503-6) over (20120503-4) ... Preparing to unpack .../fonts-freefont-ttf_20120503-6_all.deb ... Unpacking fonts-freefont-ttf (20120503-6) over (20120503-4) ... Preparing to unpack .../fonts-lyx_2.2.2-1_all.deb ... Unpacking fonts-lyx (2.2.2-1) over (2.1.2-2) ... Preparing to unpack .../fonts-sil-gentium_20081126%3a1.03-1_all.deb ... Unpacking fonts-sil-gentium (20081126:1.03-1) over (20081126:1.02-13) ... Preparing to unpack .../libdrm2_2.4.74-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.74-1) over (2.4.58-2) ... Preparing to unpack .../libgl1-mesa-glx_13.0.6-1+b2_amd64.deb ... Unpacking libgl1-mesa-glx:amd64 (13.0.6-1+b2) over (10.3.2-1+deb8u1) ... Preparing to unpack .../libglapi-mesa_13.0.6-1+b2_amd64.deb ... Unpacking libglapi-mesa:amd64 (13.0.6-1+b2) over (10.3.2-1+deb8u1) ... Preparing to unpack .../libx11-xcb1_2%3a1.6.4-3+deb9u1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.4-3+deb9u1) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libxcb-dri2-0_1.12-1_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxcb-dri3-0_1.12-1_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxcb-glx0_1.12-1_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxcb-present0_1.12-1_amd64.deb ... Unpacking libxcb-present0:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxcb-sync1_1.12-1_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxfixes3_1%3a5.0.3-1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.3-1) over (1:5.0.1-2+deb8u1) ... Preparing to unpack .../libxdamage1_1%3a1.1.4-2+b3_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-2+b3) over (1:1.1.4-2+b1) ... Preparing to unpack .../libxshmfence1_1.2-1+b2_amd64.deb ... Unpacking libxshmfence1:amd64 (1.2-1+b2) over (1.1-4) ... Preparing to unpack .../libxxf86vm1_1%3a1.1.4-1+b2_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.4-1+b2) over (1:1.1.3-1+b1) ... Preparing to unpack .../libxi6_2%3a1.7.9-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.9-1) over (2:1.7.4-1+deb8u1) ... Preparing to unpack .../freeglut3_2.8.1-3_amd64.deb ... Unpacking freeglut3:amd64 (2.8.1-3) over (2.8.1-2) ... Preparing to unpack .../ttf-dejavu-core_2.37-1_all.deb ... Unpacking ttf-dejavu-core (2.37-1) over (2.34-1) ... Preparing to unpack .../ttf-dejavu-extra_2.37-1_all.deb ... Unpacking ttf-dejavu-extra (2.37-1) over (2.34-1) ... Preparing to unpack .../ttf-dejavu_2.37-1_all.deb ... Unpacking ttf-dejavu (2.37-1) over (2.34-1) ... Preparing to unpack .../libglu1-mesa_9.0.0-2.1_amd64.deb ... Unpacking libglu1-mesa:amd64 (9.0.0-2.1) over (9.0.0-2) ... Preparing to unpack .../libatk1.0-0_2.22.0-1_amd64.deb ... Unpacking libatk1.0-0:amd64 (2.22.0-1) over (2.14.0-1) ... Preparing to unpack .../libatk1.0-data_2.22.0-1_all.deb ... Unpacking libatk1.0-data (2.22.0-1) over (2.14.0-1) ... Preparing to unpack .../libpangox-1.0-0_0.0.2-5+b2_amd64.deb ... Unpacking libpangox-1.0-0:amd64 (0.0.2-5+b2) over (0.0.2-5) ... Preparing to unpack .../libgraphite2-3_1.3.10-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.10-1) over (1.3.10-1~deb8u1) ... Preparing to unpack .../libharfbuzz0b_1.4.2-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (1.4.2-1) over (0.9.35-2) ... Preparing to unpack .../libpango-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.40.5-1) over (1.36.8-3) ... Preparing to unpack .../libpangocairo-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.40.5-1) over (1.36.8-3) ... Preparing to unpack .../libpangoxft-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpangoxft-1.0-0:amd64 (1.40.5-1) over (1.36.8-3) ... Preparing to unpack .../libpango1.0-0_1.40.5-1_amd64.deb ... Unpacking libpango1.0-0:amd64 (1.40.5-1) over (1.36.8-3) ... Preparing to unpack .../libpangoft2-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.40.5-1) over (1.36.8-3) ... Preparing to unpack .../libthai-data_0.1.26-1_all.deb ... Unpacking libthai-data (0.1.26-1) over (0.1.21-1) ... Preparing to unpack .../libdatrie1_0.2.10-4+b1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.10-4+b1) over (0.2.8-1) ... Preparing to unpack .../libthai0_0.1.26-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.26-1) over (0.1.21-1) ... Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-2) over (2:1.1.2-1) ... Preparing to unpack .../libgtkglext1_1.2.0-4_amd64.deb ... Unpacking libgtkglext1 (1.2.0-4) over (1.2.0-3.2) ... Preparing to unpack .../gamgi_0.17.1-1+b1_amd64.deb ... Unpacking gamgi (0.17.1-1+b1) over (0.17.1-1) ... Preparing to unpack .../garlic_1.6-1.1+b2_amd64.deb ... Unpacking garlic (1.6-1.1+b2) over (1.6-1.1) ... Preparing to unpack .../python-reportlab-accel_3.3.0-2+deb9u1_amd64.deb ... Unpacking python-reportlab-accel:amd64 (3.3.0-2+deb9u1) over (3.1.8-3+deb8u1) ... Preparing to unpack .../python-reportlab_3.3.0-2+deb9u1_all.deb ... Unpacking python-reportlab (3.3.0-2+deb9u1) over (3.1.8-3+deb8u1) ... Preparing to unpack .../python-biopython_1.68+dfsg-3_amd64.deb ... Unpacking python-biopython (1.68+dfsg-3) over (1.64+dfsg-5) ... Preparing to unpack .../gasic_0.0.r19-1_amd64.deb ... Unpacking gasic (0.0.r19-1) over (0.0.r18-2) ... Preparing to unpack .../gdpc_2.2.5-6_amd64.deb ... Unpacking gdpc (2.2.5-6) over (2.2.5-3) ... Preparing to unpack .../liblua5.1-0_5.1.5-8.1+b2_amd64.deb ... Unpacking liblua5.1-0:amd64 (5.1.5-8.1+b2) over (5.1.5-7.1) ... Preparing to unpack .../libtre5_0.8.0-6_amd64.deb ... Unpacking libtre5:amd64 (0.8.0-6) over (0.8.0-4+deb8u1) ... Preparing to unpack .../lua-filesystem_1.6.3-1_amd64.deb ... Unpacking lua-filesystem:amd64 (1.6.3-1) over (1.6.2-3) ... Preparing to unpack .../lua-lpeg_1.0.0-1_amd64.deb ... Unpacking lua-lpeg:amd64 (1.0.0-1) over (0.12-1) ... Preparing to unpack .../libpth20_2.0.7-20+b2_amd64.deb ... Unpacking libpth20:amd64 (2.0.7-20+b2) over (2.0.7-20) ... Preparing to unpack .../genometools-common_1.5.9+ds-4_all.deb ... Unpacking genometools-common (1.5.9+ds-4) over (1.5.3-2) ... Preparing to unpack .../genometools_1.5.9+ds-4_amd64.deb ... Unpacking genometools (1.5.9+ds-4) over (1.5.3-2) ... Preparing to unpack .../gff2aplot_2.0-8+b1_amd64.deb ... Unpacking gff2aplot (2.0-8+b1) over (2.0-7) ... Preparing to unpack .../gff2ps_0.98d-5_all.deb ... Unpacking gff2ps (0.98d-5) over (0.98d-4) ... Preparing to unpack .../giira_0.0.20140625-1_amd64.deb ... Unpacking giira (0.0.20140625-1) over (0.0.20140210-2) ... Preparing to unpack .../libfftw3-double3_3.3.5-3_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.5-3) over (3.3.4-2) ... Preparing to unpack .../glam2_1064-3+b1_amd64.deb ... Unpacking glam2 (1064-3+b1) over (1064-3) ... Preparing to unpack .../gnuplot_5.0.5+dfsg1-6+deb9u1_all.deb ... Unpacking gnuplot (5.0.5+dfsg1-6+deb9u1) over (4.6.6-2) ... Preparing to unpack .../gnustep-common_2.6.8-2.1_amd64.deb ... Unpacking gnustep-common (2.6.8-2.1) over (2.6.6-3) ... Preparing to unpack .../gnustep-base-common_1.24.9-3.1+deb9u1_all.deb ... Unpacking gnustep-base-common (1.24.9-3.1+deb9u1) over (1.24.7-1) ... Preparing to unpack .../gnustep-base-runtime_1.24.9-3.1+deb9u1_amd64.deb ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking gnustep-base-runtime (1.24.9-3.1+deb9u1) over (1.24.7-1) ... Preparing to unpack .../gnustep-gui-common_0.25.0-4_all.deb ... Unpacking gnustep-gui-common (0.25.0-4) over (0.24.0-3) ... Preparing to unpack .../libgetopt-euclid-perl_0.4.5-2_all.deb ... Unpacking libgetopt-euclid-perl (0.4.5-2) over (0.4.5-1) ... Preparing to unpack .../grinder_0.5.4-1_all.deb ... Unpacking grinder (0.5.4-1) over (0.5.3-3) ... Preparing to unpack .../gsettings-desktop-schemas_3.22.0-1_all.deb ... Unpacking gsettings-desktop-schemas (3.22.0-1) over (3.14.1-1) ... Preparing to unpack .../gsfonts_1%3a8.11+urwcyr1.0.7~pre44-4.3_all.deb ... Unpacking gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) over (1:8.11+urwcyr1.0.7~pre44-4.2) ... Preparing to unpack .../hicolor-icon-theme_0.15-1_all.deb ... Unpacking hicolor-icon-theme (0.15-1) over (0.13-1) ... Preparing to unpack .../libpvm3_3.4.6-1+b2_amd64.deb ... Unpacking libpvm3:amd64 (3.4.6-1+b2) over (3.4.5-12.6) ... Preparing to unpack .../hmmer2_2.3.2-13_amd64.deb ... Unpacking hmmer2 (2.3.2-13) over (2.3.2-8) ... Preparing to unpack .../infernal_1.1.2-1_amd64.deb ... Unpacking infernal (1.1.2-1) over (1.1.1-2) ... Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) over (0.35.0+20060710.1) ... Preparing to unpack .../iso-codes_3.75-1_all.deb ... Unpacking iso-codes (3.75-1) over (3.57-1) ... Preparing to unpack .../jarwrapper_0.59_all.deb ... Unpacking jarwrapper (0.59) over (0.48+deb8u1) ... Preparing to unpack .../java-common_0.58+deb9u1_all.deb ... Unpacking java-common (0.58+deb9u1) over (0.52) ... Preparing to unpack .../javahelp2_2.0.05.ds1-9_all.deb ... Unpacking javahelp2 (2.0.05.ds1-9) over (2.0.05.ds1-7) ... Preparing to unpack .../jmol-applet_14.6.4+2016.11.05+dfsg1-3_all.deb ... Unpacking jmol-applet (14.6.4+2016.11.05+dfsg1-3) over (12.2.32+dfsg2-1) ... Preparing to unpack .../libhamcrest-java_1.3-6_all.deb ... Unpacking libhamcrest-java (1.3-6) over (1.3-5) ... Preparing to unpack .../archives/junit4_4.12-4_all.deb ... Unpacking junit4 (4.12-4) over (4.11-3) ... Preparing to unpack .../kalign_1%3a2.03+20110620-3_amd64.deb ... Unpacking kalign (1:2.03+20110620-3) over (1:2.03+20110620-2) ... Preparing to unpack .../libbcprov-java_1.56-1+deb9u2_all.deb ... Unpacking libbcprov-java (1.56-1+deb9u2) over (1.49+dfsg-3+deb8u2) ... Preparing to unpack .../libbcpkix-java_1.56-1+deb9u2_all.deb ... Unpacking libbcpkix-java (1.56-1+deb9u2) over (1.49+dfsg-3+deb8u2) ... Preparing to unpack .../libmail-java_1.5.6-2_all.deb ... Unpacking libmail-java (1.5.6-2) over (1.5.2-3) ... Preparing to unpack .../libbcmail-java_1.56-1+deb9u2_all.deb ... Unpacking libbcmail-java (1.56-1+deb9u2) over (1.49+dfsg-3+deb8u2) ... Preparing to unpack .../libitext-java_2.1.7-11_all.deb ... Unpacking libitext-java (2.1.7-11) over (2.1.7-9) ... Preparing to unpack .../king_2.23.161103+dfsg1-1_all.deb ... Unpacking king (2.23.161103+dfsg1-1) over (2.21.120420+dfsg-1) ... Preparing to unpack .../ksh_93u+20120801-3.1_amd64.deb ... Unpacking ksh (93u+20120801-3.1) over (93u+20120801-1) ... Preparing to unpack .../laptop-detect_0.13.8_amd64.deb ... Unpacking laptop-detect (0.13.8) over (0.13.7) ... Preparing to unpack .../libalgorithm-c3-perl_0.10-1_all.deb ... Unpacking libalgorithm-c3-perl (0.10-1) over (0.09-1) ... Preparing to unpack .../libalgorithm-diff-perl_1.19.03-1_all.deb ... Unpacking libalgorithm-diff-perl (1.19.03-1) over (1.19.02-3) ... Preparing to unpack .../libalgorithm-merge-perl_0.08-3_all.deb ... Unpacking libalgorithm-merge-perl (0.08-3) over (0.08-2) ... Preparing to unpack .../libalgorithm-munkres-perl_0.08-3_all.deb ... Unpacking libalgorithm-munkres-perl (0.08-3) over (0.08-2) ... Preparing to unpack .../libanyevent-cachedns-perl_0.08-2_all.deb ... Unpacking libanyevent-cachedns-perl (0.08-2) over (0.08-1) ... Preparing to unpack .../libanyevent-http-perl_2.23-1_all.deb ... Unpacking libanyevent-http-perl (2.23-1) over (2.21-1) ... Preparing to unpack .../libao-common_1.2.2-1_amd64.deb ... Unpacking libao-common (1.2.2-1) over (1.1.0-3) ... Preparing to unpack .../libao4_1.2.2-1_amd64.deb ... Unpacking libao4 (1.2.2-1) over (1.1.0-3) ... Preparing to unpack .../libapache2-reload-perl_0.13-1_all.deb ... Unpacking libapache2-reload-perl (0.13-1) over (0.12-3) ... Preparing to unpack .../libapr1_1.5.2-5_amd64.deb ... Unpacking libapr1:amd64 (1.5.2-5) over (1.5.1-3) ... Preparing to unpack .../libargtable2-0_13-1_amd64.deb ... Unpacking libargtable2-0 (13-1) over (12-1.1) ... Preparing to unpack .../libclass-method-modifiers-perl_2.12-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.12-1) over (2.11-1) ... Preparing to unpack .../libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) over (0.001011-1) ... Preparing to unpack .../libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) over (0.13-1) ... Preparing to unpack .../libmodule-runtime-perl_0.014-2_all.deb ... Unpacking libmodule-runtime-perl (0.014-2) over (0.014-1) ... Preparing to unpack .../libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) over (1.002004-1) ... Preparing to unpack .../librole-tiny-perl_2.000005-1_all.deb ... Unpacking librole-tiny-perl (2.000005-1) over (1.003004-1) ... Preparing to unpack .../libstrictures-perl_2.000003-1_all.deb ... Unpacking libstrictures-perl (2.000003-1) over (1.005005-1) ... Preparing to unpack .../libmoo-perl_2.002005-1_all.deb ... Unpacking libmoo-perl (2.002005-1) over (1.006001-1) ... Preparing to unpack .../libexporter-tiny-perl_0.042-1_all.deb ... Unpacking libexporter-tiny-perl (0.042-1) over (0.038-2) ... Preparing to unpack .../libtype-tiny-perl_1.000005-1_all.deb ... Unpacking libtype-tiny-perl (1.000005-1) over (1.000004-1) ... Preparing to unpack .../libarray-compare-perl_3.0.0-1_all.deb ... Unpacking libarray-compare-perl (3.0.0-1) over (2.11-1) ... Preparing to unpack .../libasound2_1.1.3-5_amd64.deb ... Unpacking libasound2:amd64 (1.1.3-5) over (1.0.28-1) ... Preparing to unpack .../libasound2-data_1.1.3-5_all.deb ... Unpacking libasound2-data (1.1.3-5) over (1.0.28-1) ... Preparing to unpack .../libasyncns0_0.8-6_amd64.deb ... Unpacking libasyncns0:amd64 (0.8-6) over (0.8-5) ... Preparing to unpack .../libfontenc1_1%3a1.1.3-1+b2_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.3-1+b2) over (1:1.1.2-1+b2) ... Preparing to unpack .../libxpm4_1%3a3.5.12-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1) over (1:3.5.12-0+deb8u1) ... Preparing to unpack .../libxaw7_2%3a1.0.13-1+b2_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.13-1+b2) over (2:1.0.12-2+b1) ... Preparing to unpack .../libxcb-shape0_1.12-1_amd64.deb ... Unpacking libxcb-shape0:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxcomposite1_1%3a0.4.4-2_amd64.deb ... Unpacking libxcomposite1:amd64 (1:0.4.4-2) over (1:0.4.4-1) ... Preparing to unpack .../libxinerama1_2%3a1.1.3-1+b3_amd64.deb ... Unpacking libxinerama1:amd64 (2:1.1.3-1+b3) over (2:1.1.3-1+b1) ... Preparing to unpack .../libxmuu1_2%3a1.1.2-2_amd64.deb ... Unpacking libxmuu1:amd64 (2:1.1.2-2) over (2:1.1.2-1) ... Preparing to unpack .../libxrandr2_2%3a1.5.1-1_amd64.deb ... Unpacking libxrandr2:amd64 (2:1.5.1-1) over (2:1.4.2-1+deb8u1) ... Preparing to unpack .../libxtst6_2%3a1.2.3-1_amd64.deb ... Unpacking libxtst6:amd64 (2:1.2.3-1) over (2:1.2.2-1+deb8u1) ... Preparing to unpack .../libxv1_2%3a1.0.11-1_amd64.deb ... Unpacking libxv1:amd64 (2:1.0.11-1) over (2:1.0.10-1+deb8u1) ... Preparing to unpack .../libxxf86dga1_2%3a1.1.4-1+b3_amd64.deb ... Unpacking libxxf86dga1:amd64 (2:1.1.4-1+b3) over (2:1.1.4-1+b1) ... Preparing to unpack .../x11-utils_7.7+3+b1_amd64.deb ... Unpacking x11-utils (7.7+3+b1) over (7.7+2) ... Preparing to unpack .../libatk-wrapper-java_0.33.3-13+deb9u1_all.deb ... Unpacking libatk-wrapper-java (0.33.3-13+deb9u1) over (0.30.5-1) ... Preparing to unpack .../libatm1_1%3a2.5.1-2_amd64.deb ... Unpacking libatm1:amd64 (1:2.5.1-2) over (1:2.5.1-1.5) ... Preparing to unpack .../libavahi-common-data_0.6.32-2_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.32-2) over (0.6.31-5) ... Preparing to unpack .../libavahi-common3_0.6.32-2_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.32-2) over (0.6.31-5) ... Preparing to unpack .../libcommons-codec-java_1.10-1_all.deb ... Unpacking libcommons-codec-java (1.10-1) over (1.9-1) ... Preparing to unpack .../libcommons-httpclient-java_3.1-12_all.deb ... Unpacking libcommons-httpclient-java (3.1-12) over (3.1-11+deb8u1) ... Preparing to unpack .../libwsdl4j-java_1.6.3-4_all.deb ... Unpacking libwsdl4j-java (1.6.3-4) over (1.6.3-1) ... Preparing to unpack .../libaxis-java_1.4-25_all.deb ... Unpacking libaxis-java (1.4-25) over (1.4-22) ... Preparing to unpack .../libball1.4-data_1.4.3~beta1-3_all.deb ... Unpacking libball1.4-data (1.4.3~beta1-3) over (1.4.2+20140406-1) ... Preparing to unpack .../libbio-asn1-entrezgene-perl_1.720-1_all.deb ... Unpacking libbio-asn1-entrezgene-perl (1.720-1) over (1.700-1) ... Preparing to unpack .../libbio-graphics-perl_2.40-1_all.deb ... Unpacking libbio-graphics-perl (2.40-1) over (2.39-2) ... Preparing to unpack .../libcaca0_0.99.beta19-2.1~deb9u1_amd64.deb ... Unpacking libcaca0:amd64 (0.99.beta19-2.1~deb9u1) over (0.99.beta19-2) ... Preparing to unpack .../liberror-perl_0.17024-1_all.deb ... Unpacking liberror-perl (0.17024-1) over (0.17-1.1) ... Preparing to unpack .../libcache-cache-perl_1.08-2_all.deb ... Unpacking libcache-cache-perl (1.08-2) over (1.07-2) ... Preparing to unpack .../libcairo-gobject2_1.14.8-1_amd64.deb ... Unpacking libcairo-gobject2:amd64 (1.14.8-1) over (1.14.0-2.1+deb8u2) ... Preparing to unpack .../libltdl7_2.4.6-2_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-2) over (2.4.2-1.11+b1) ... Preparing to unpack .../libtdb1_1.3.11-2_amd64.deb ... Unpacking libtdb1:amd64 (1.3.11-2) over (1.3.6-0+deb8u1) ... Preparing to unpack .../libvorbisenc2_1.3.5-4+deb9u2_amd64.deb ... Unpacking libvorbisenc2:amd64 (1.3.5-4+deb9u2) over (1.3.4-2+deb8u1) ... Preparing to unpack .../libvorbisfile3_1.3.5-4+deb9u2_amd64.deb ... Unpacking libvorbisfile3:amd64 (1.3.5-4+deb9u2) over (1.3.4-2+deb8u1) ... Preparing to unpack .../libvorbis0a_1.3.5-4+deb9u2_amd64.deb ... Unpacking libvorbis0a:amd64 (1.3.5-4+deb9u2) over (1.3.4-2+deb8u1) ... Preparing to unpack .../libcanberra0_0.30-3_amd64.deb ... Unpacking libcanberra0:amd64 (0.30-3) over (0.30-2.1) ... Preparing to unpack .../libcanberra-gtk3-0_0.30-3_amd64.deb ... Unpacking libcanberra-gtk3-0:amd64 (0.30-3) over (0.30-2.1) ... Preparing to unpack .../libcanberra-gtk3-module_0.30-3_amd64.deb ... Unpacking libcanberra-gtk3-module:amd64 (0.30-3) over (0.30-2.1) ... Preparing to unpack .../libcarp-clan-perl_6.06-1_all.deb ... Unpacking libcarp-clan-perl (6.06-1) over (6.04-1) ... Preparing to unpack .../libcastor-core-java_1.3.2-4_all.deb ... Unpacking libcastor-core-java (1.3.2-4) over (1.3.2-3) ... Preparing to unpack .../libcastor-xml-java_1.3.2-4_all.deb ... Unpacking libcastor-xml-java (1.3.2-4) over (1.3.2-3) ... Preparing to unpack .../libcdt5_2.38.0-17_amd64.deb ... Unpacking libcdt5 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libcgi-fast-perl_1%3a2.12-1_all.deb ... Unpacking libcgi-fast-perl (1:2.12-1) over (1:2.04-1) ... Preparing to unpack .../libcgi-pm-perl_4.35-1_all.deb ... Unpacking libcgi-pm-perl (4.35-1) over (4.09-1) ... Preparing to unpack .../libcgi-session-perl_4.48-3_all.deb ... Unpacking libcgi-session-perl (4.48-3) over (4.48-1+deb8u1) ... Preparing to unpack .../libcgraph6_2.38.0-17_amd64.deb ... Unpacking libcgraph6 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libclass-c3-perl_0.32-1_all.deb ... Unpacking libclass-c3-perl (0.32-1) over (0.26-1) ... Preparing to unpack .../libclass-inspector-perl_1.31-1_all.deb ... Unpacking libclass-inspector-perl (1.31-1) over (1.28-1) ... Preparing to unpack .../liblcms2-2_2.8-4+deb9u1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.8-4+deb9u1) over (2.6-3+deb8u1) ... Preparing to unpack .../libcolord2_1.3.3-2_amd64.deb ... Unpacking libcolord2:amd64 (1.3.3-2) over (1.2.1-1+b2) ... Preparing to unpack .../libusb-1.0-0_2%3a1.0.21-1_amd64.deb ... Unpacking libusb-1.0-0:amd64 (2:1.0.21-1) over (2:1.0.19-1) ... Preparing to unpack .../libgusb2_0.2.9-1+b1_amd64.deb ... Unpacking libgusb2:amd64 (0.2.9-1+b1) over (0.1.6-5) ... Preparing to unpack .../libcolorhug2_1.3.3-2_amd64.deb ... Unpacking libcolorhug2:amd64 (1.3.3-2) over (1.2.1-1+b2) ... Preparing to unpack .../libcommons-parent-java_39-3_all.deb ... Unpacking libcommons-parent-java (39-3) over (22-2) ... Preparing to unpack .../libcommons-compress-java_1.13-1_all.deb ... Unpacking libcommons-compress-java (1.13-1) over (1.9-1) ... Preparing to unpack .../libcommons-io-java_2.5-1_all.deb ... Unpacking libcommons-io-java (2.5-1) over (2.4-2) ... Preparing to unpack .../libcommons-jexl2-java_2.1.1-3_all.deb ... Unpacking libcommons-jexl2-java (2.1.1-3) over (2.1.1-2) ... Preparing to unpack .../libcommons-lang-java_2.6-6_all.deb ... Unpacking libcommons-lang-java (2.6-6) over (2.6-4) ... Preparing to unpack .../libcommons-math3-java_3.6.1-2_all.deb ... Unpacking libcommons-math3-java (3.6.1-2) over (3.3-1) ... Preparing to unpack .../libconfig-general-perl_2.63-1_all.deb ... Unpacking libconfig-general-perl (2.63-1) over (2.56-1) ... Preparing to unpack .../libconvert-binhex-perl_1.125-1_all.deb ... Unpacking libconvert-binhex-perl (1.125-1) over (1.123-2) ... Preparing to unpack .../libcr0_0.8.5-2.3+b1_amd64.deb ... Unpacking libcr0 (0.8.5-2.3+b1) over (0.8.5-2.2) ... Preparing to unpack .../libdata-dumper-simple-perl_0.11-5_all.deb ... Unpacking libdata-dumper-simple-perl (0.11-5) over (0.11-4) ... Preparing to unpack .../libdata-optlist-perl_0.110-1_all.deb ... Unpacking libdata-optlist-perl (0.110-1) over (0.109-1) ... Preparing to unpack .../libdate-manip-perl_6.57-1_all.deb ... Unpacking libdate-manip-perl (6.57-1) over (6.47-1) ... Preparing to unpack .../libdevel-symdump-perl_2.17-1_all.deb ... Unpacking libdevel-symdump-perl (2.17-1) over (2.12-1) ... Preparing to unpack .../libdirectfb-1.2-9_1.2.10.0-8+deb9u1_amd64.deb ... Unpacking libdirectfb-1.2-9:amd64 (1.2.10.0-8+deb9u1) over (1.2.10.0-5.1) ... Preparing to unpack .../libdjvulibre-text_3.5.27.1-7_all.deb ... Unpacking libdjvulibre-text (3.5.27.1-7) over (3.5.25.4-4) ... Preparing to unpack .../libjaxen-java_1.1.6-1+deb9u1_all.deb ... Unpacking libjaxen-java (1.1.6-1+deb9u1) over (1.1.6-1) ... Preparing to unpack .../libisorelax-java_20041111-9_all.deb ... Unpacking libisorelax-java (20041111-9) over (20041111-8) ... Preparing to unpack .../libmsv-java_2009.1+dfsg1-5_all.deb ... Unpacking libmsv-java (2009.1+dfsg1-5) over (2009.1+dfsg1-4) ... Preparing to unpack .../libdom4j-java_1.6.1+dfsg.3-2+deb9u1_all.deb ... Unpacking libdom4j-java (1.6.1+dfsg.3-2+deb9u1) over (1.6.1+dfsg.3-2) ... Preparing to unpack .../libpciaccess0_0.13.4-1+b2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.13.4-1+b2) over (0.13.2-3+b1) ... Preparing to unpack .../libdrm-intel1_2.4.74-1_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.74-1) over (2.4.58-2) ... Preparing to unpack .../libdrm-nouveau2_2.4.74-1_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.74-1) over (2.4.58-2) ... Preparing to unpack .../libdrm-radeon1_2.4.74-1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.74-1) over (2.4.58-2) ... Preparing to unpack .../libelf1_0.168-1_amd64.deb ... Unpacking libelf1:amd64 (0.168-1) over (0.159-4.2) ... Preparing to unpack .../libelk0_3.99.8-4.1+b1_amd64.deb ... Unpacking libelk0 (3.99.8-4.1+b1) over (3.99.8-2.1) ... Preparing to unpack .../libencode-locale-perl_1.05-1_all.deb ... Unpacking libencode-locale-perl (1.05-1) over (1.03-1) ... Preparing to unpack .../libexif12_0.6.21-2+deb9u4_amd64.deb ... Unpacking libexif12:amd64 (0.6.21-2+deb9u4) over (0.6.21-2) ... Preparing to unpack .../libfann2_2.2.0+ds-3_amd64.deb ... Unpacking libfann2:amd64 (2.2.0+ds-3) over (2.1.0~beta+dfsg-1) ... Preparing to unpack .../libfftw3-single3_3.3.5-3_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.5-3) over (3.3.4-2) ... Preparing to unpack .../liburi-perl_1.71-1_all.deb ... Unpacking liburi-perl (1.71-1) over (1.64-1) ... Preparing to unpack .../libfile-desktopentry-perl_0.22-1_all.deb ... Unpacking libfile-desktopentry-perl (0.22-1) over (0.07-1) ... Preparing to unpack .../shared-mime-info_1.8-1+deb9u1_amd64.deb ... Unpacking shared-mime-info (1.8-1+deb9u1) over (1.3-1) ... Preparing to unpack .../libfile-mimeinfo-perl_0.27-1_all.deb ... Unpacking libfile-mimeinfo-perl (0.27-1) over (0.26-1) ... Preparing to unpack .../libfile-which-perl_1.21-1_all.deb ... Unpacking libfile-which-perl (1.21-1) over (1.09-1) ... Preparing to unpack .../libflac8_1.3.2-1_amd64.deb ... Unpacking libflac8:amd64 (1.3.2-1) over (1.3.0-3) ... Preparing to unpack .../libfont-afm-perl_1.20-2_all.deb ... Unpacking libfont-afm-perl (1.20-2) over (1.20-1) ... Preparing to unpack .../libfont-ttf-perl_1.06-1_all.deb ... Unpacking libfont-ttf-perl (1.06-1) over (1.04-1) ... Preparing to unpack .../libnb-org-openide-util-lookup-java_8.1+dfsg1-5_all.deb ... Unpacking libnb-org-openide-util-lookup-java (8.1+dfsg1-5) over (7.4+dfsg1-2) ... Preparing to unpack .../libnb-org-openide-util-java_8.1+dfsg1-5_all.deb ... Unpacking libnb-org-openide-util-java (8.1+dfsg1-5) over (7.4+dfsg1-2) ... Preparing to unpack .../libfreehep-util-java_2.0.2-6_all.deb ... Unpacking libfreehep-util-java (2.0.2-6) over (2.0.2-5) ... Preparing to unpack .../libfreehep-swing-java_2.0.3-4_all.deb ... Unpacking libfreehep-swing-java (2.0.3-4) over (2.0.3-3) ... Preparing to unpack .../libfreehep-export-java_2.1.1-3_all.deb ... Unpacking libfreehep-export-java (2.1.1-3) over (2.1.1-2) ... Preparing to unpack .../libfreehep-graphics2d-java_2.1.1-5_all.deb ... Unpacking libfreehep-graphics2d-java (2.1.1-5) over (2.1.1-4) ... Preparing to unpack .../libfreehep-io-java_2.0.2-5_all.deb ... Unpacking libfreehep-io-java (2.0.2-5) over (2.0.2-4) ... Preparing to unpack .../libfreehep-graphicsio-java_2.1.1-4_all.deb ... Unpacking libfreehep-graphicsio-java (2.1.1-4) over (2.1.1-3) ... Preparing to unpack .../libtablelayout-java_20090826-3_all.deb ... Unpacking libtablelayout-java (20090826-3) over (20090826-2) ... Preparing to unpack .../libjas-plotter-java_2.2.6+dfsg1-3_all.deb ... Unpacking libjas-plotter-java (2.2.6+dfsg1-3) over (2.2.6+dfsg1-2) ... Preparing to unpack .../libfreehep-graphicsio-tests-java_2.1.1+dfsg1-4_all.deb ... Unpacking libfreehep-graphicsio-tests-java (2.1.1+dfsg1-4) over (2.1.1+dfsg1-3) ... Preparing to unpack .../libfreehep-graphicsio-emf-java_2.1.1-emfplus+dfsg1-3_all.deb ... Unpacking libfreehep-graphicsio-emf-java (2.1.1-emfplus+dfsg1-3) over (2.1.1-emfplus+dfsg1-2) ... Preparing to unpack .../libfreehep-graphicsio-pdf-java_2.1.1+dfsg-2_all.deb ... Unpacking libfreehep-graphicsio-pdf-java (2.1.1+dfsg-2) over (2.1.1+dfsg-1) ... Preparing to unpack .../libfreehep-graphicsio-ps-java_2.1.1-2_all.deb ... Unpacking libfreehep-graphicsio-ps-java (2.1.1-2) over (2.1.1-1) ... Preparing to unpack .../libfreehep-xml-java_2.1.2+dfsg1-4_all.deb ... Unpacking libfreehep-xml-java (2.1.2+dfsg1-4) over (2.1.2+dfsg1-3) ... Preparing to unpack .../libfreehep-graphicsio-svg-java_2.1.1-4_all.deb ... Unpacking libfreehep-graphicsio-svg-java (2.1.1-4) over (2.1.1-3) ... Preparing to unpack .../libfreehep-graphicsio-swf-java_2.1.1+dfsg-2_all.deb ... Unpacking libfreehep-graphicsio-swf-java (2.1.1+dfsg-2) over (2.1.1+dfsg-1) ... Preparing to unpack .../libg20_0.72-6_amd64.deb ... Unpacking libg20 (0.72-6) over (0.72-5+b1) ... Preparing to unpack .../libgetopt-simple-perl_1.52-5_all.deb ... Unpacking libgetopt-simple-perl (1.52-5) over (1.52-4) ... Preparing to unpack .../libglib2.0-data_2.50.3-2+deb9u2_all.deb ... Unpacking libglib2.0-data (2.50.3-2+deb9u2) over (2.42.1-1) ... Preparing to unpack .../libgnumail-java_1.1.2-10_all.deb ... Unpacking libgnumail-java (1.1.2-10) over (1.1.2-9) ... Preparing to unpack .../libipc-run-perl_0.94-1+deb9u1_all.deb ... Unpacking libipc-run-perl (0.94-1+deb9u1) over (0.92-1+deb8u1) ... Preparing to unpack .../libparse-recdescent-perl_1.967013+dfsg-1_all.deb ... Unpacking libparse-recdescent-perl (1.967013+dfsg-1) over (1.967009+dfsg-1) ... Preparing to unpack .../libxml-twig-perl_1%3a3.50-1_all.deb ... Unpacking libxml-twig-perl (1:3.50-1) over (1:3.48-1) ... Preparing to unpack .../libxml-xpath-perl_1.40-1_all.deb ... Unpacking libxml-xpath-perl (1.40-1) over (1.13-7) ... Preparing to unpack .../libgraphviz-perl_2.22-1_all.deb ... Unpacking libgraphviz-perl (2.22-1) over (2.16-1) ... Preparing to unpack .../libyaml-perl_1.21-1_all.deb ... Unpacking libyaml-perl (1.21-1) over (1.13-1) ... Preparing to unpack .../libgo-perl_0.15-5_all.deb ... Unpacking libgo-perl (0.15-5) over (0.15-1) ... Preparing to unpack .../libgphoto2-l10n_2.5.12-1_all.deb ... Unpacking libgphoto2-l10n (2.5.12-1) over (2.5.4-1.1) ... Preparing to unpack .../libgraph-perl_1%3a0.96-2_all.deb ... Unpacking libgraph-perl (1:0.96-2) over (1:0.96-1.1) ... Preparing to unpack .../libgraphics-colornames-perl_2.11-7.1_all.deb ... Unpacking libgraphics-colornames-perl (2.11-7.1) over (2.11-6) ... Preparing to unpack .../libgraphics-colorobject-perl_0.5.0-7.1_all.deb ... Unpacking libgraphics-colorobject-perl (0.5.0-7.1) over (0.5.0-6) ... Preparing to unpack .../libgtk-3-common_3.22.11-1_all.deb ... Unpacking libgtk-3-common (3.22.11-1) over (3.14.5-1+deb8u1) ... Preparing to unpack .../libgtk2.0-common_2.24.31-2_all.deb ... Unpacking libgtk2.0-common (2.24.31-2) over (2.24.25-3+deb8u2) ... Preparing to unpack .../libgudev-1.0-0_230-3_amd64.deb ... Unpacking libgudev-1.0-0:amd64 (230-3) over (215-17+deb8u7) ... Preparing to unpack .../libgvpr2_2.38.0-17_amd64.deb ... Unpacking libgvpr2 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libheap-perl_0.80-3_all.deb ... Unpacking libheap-perl (0.80-3) over (0.80-2) ... Preparing to unpack .../libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) over (3.20-2) ... Preparing to unpack .../libhtml-tree-perl_5.03-2_all.deb ... Unpacking libhtml-tree-perl (5.03-2) over (5.03-1) ... Preparing to unpack .../libhtml-format-perl_2.12-1_all.deb ... Unpacking libhtml-format-perl (2.12-1) over (2.11-1) ... Preparing to unpack .../libhtml-tableextract-perl_2.13-1_all.deb ... Unpacking libhtml-tableextract-perl (2.13-1) over (2.11-1) ... Preparing to unpack .../libhttp-message-perl_6.11-1_all.deb ... Unpacking libhttp-message-perl (6.11-1) over (6.06-1) ... Preparing to unpack .../libhttpmime-java_4.5.2-2_all.deb ... Unpacking libhttpmime-java (4.5.2-2) over (4.3.5-2) ... Preparing to unpack .../libhttpcore-java_4.4.6-1_all.deb ... Unpacking libhttpcore-java (4.4.6-1) over (4.3.3-1) ... Preparing to unpack .../libhttpclient-java_4.5.2-2_all.deb ... Unpacking libhttpclient-java (4.5.2-2) over (4.3.5-2) ... Preparing to unpack .../libieee1284-3_0.2.11-13_amd64.deb ... Unpacking libieee1284-3:amd64 (0.2.11-13) over (0.2.11-12) ... Preparing to unpack .../libijs-0.35_0.35-12_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-12) over (0.35-10) ... Preparing to unpack .../libio-all-perl_0.86-2_all.deb ... Unpacking libio-all-perl (0.86-2) over (0.79-1) ... Preparing to unpack .../libio-socket-ssl-perl_2.044-1_all.deb ... Unpacking libio-socket-ssl-perl (2.044-1) over (2.002-2+deb8u3) ... Preparing to unpack .../libio-stringy-perl_2.111-2_all.deb ... Unpacking libio-stringy-perl (2.111-2) over (2.110-5) ... Preparing to unpack .../libitext5-java_5.5.6-2_all.deb ... Unpacking libitext5-java (5.5.6-2) over (5.5.3-2) ... Preparing to unpack .../libjam-java_0.1.20140824-2_all.deb ... Unpacking libjam-java (0.1.20140824-2) over (0.0.r304-1) ... Preparing to unpack .../libjbig2dec0_0.13-4.1_amd64.deb ... Unpacking libjbig2dec0:amd64 (0.13-4.1) over (0.13-4~deb8u2) ... Preparing to unpack .../libjcommon-java_1.0.23-1_all.deb ... Unpacking libjcommon-java (1.0.23-1) over (1.0.16-4) ... Preparing to unpack .../libjebl2-java_0.1+20140614-1_all.deb ... Unpacking libjebl2-java (0.1+20140614-1) over (0.0.r22-1) ... Preparing to unpack .../libjets3t-java_0.8.1+dfsg-3_all.deb ... Unpacking libjets3t-java (0.8.1+dfsg-3) over (0.8.1+dfsg-1) ... Preparing to unpack .../libjgoodies-common-java_1.8.1-2_all.deb ... Unpacking libjgoodies-common-java (1.8.1-2) over (1.4.0-2) ... Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.5.1-2_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.5.1-2) over (1:1.3.1-12) ... Preparing to unpack .../libjpeg62-turbo_1%3a1.5.1-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.1-2) over (1:1.3.1-12) ... Preparing to unpack .../libjpeg-dev_1%3a1.5.1-2_all.deb ... Unpacking libjpeg-dev (1:1.5.1-2) over (1:1.3.1-12) ... Preparing to unpack .../libjs-jquery_3.1.1-2+deb9u1_all.deb ... Unpacking libjs-jquery (3.1.1-2+deb9u1) over (1.7.2+dfsg-3.2) ... Preparing to unpack .../libjs-jquery-ui_1.12.1+dfsg-4_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-4) over (1.10.1+dfsg-1) ... Preparing to unpack .../libjs-underscore_1.8.3~dfsg-1_all.deb ... Unpacking libjs-underscore (1.8.3~dfsg-1) over (1.7.0~dfsg-1) ... Preparing to unpack .../libjsch-java_0.1.54-1_all.deb ... Unpacking libjsch-java (0.1.54-1) over (0.1.51-1) ... Preparing to unpack .../libjson-glib-1.0-common_1.2.6-1_all.deb ... Unpacking libjson-glib-1.0-common (1.2.6-1) over (1.0.2-1) ... Preparing to unpack .../libjson-glib-1.0-0_1.2.6-1_amd64.deb ... Unpacking libjson-glib-1.0-0:amd64 (1.2.6-1) over (1.0.2-1) ... Preparing to unpack .../libjson-perl_2.90-1_all.deb ... Unpacking libjson-perl (2.90-1) over (2.61-1) ... Preparing to unpack .../libjswingreader-java_0.3-2_all.deb ... Unpacking libjswingreader-java (0.3-2) over (0.3-1) ... Preparing to unpack .../liblog4j1.2-java_1.2.17-7+deb9u1_all.deb ... Unpacking liblog4j1.2-java (1.2.17-7+deb9u1) over (1.2.17-5) ... Preparing to unpack .../liblzo2-2_2.08-1.2+b2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.08-1.2+b2) over (2.08-1.2) ... Preparing to unpack .../libsys-hostname-long-perl_1.5-1_all.deb ... Unpacking libsys-hostname-long-perl (1.5-1) over (1.4-3) ... Preparing to unpack .../libmail-sendmail-perl_0.79.16-2_all.deb ... Unpacking libmail-sendmail-perl (0.79.16-2) over (0.79.16-1) ... Preparing to unpack .../libtimedate-perl_2.3000-2+deb9u1_all.deb ... Unpacking libtimedate-perl (2.3000-2+deb9u1) over (2.3000-2) ... Preparing to unpack .../libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) over (1.01-3) ... Preparing to unpack .../libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) over (2.13-1) ... Preparing to unpack .../libmath-bezier-perl_0.01-2_all.deb ... Unpacking libmath-bezier-perl (0.01-2) over (0.01-1) ... Preparing to unpack .../libmath-derivative-perl_0.04-2_all.deb ... Unpacking libmath-derivative-perl (0.04-2) over (0.01-6) ... Preparing to unpack .../libmath-round-perl_0.07-1_all.deb ... Unpacking libmath-round-perl (0.07-1) over (0.06-4) ... Preparing to unpack .../libmath-vec-perl_1.01-3_all.deb ... Unpacking libmath-vec-perl (1.01-3) over (1.01-2) ... Preparing to unpack .../libmiglayout-java_4.2-3_all.deb ... Unpacking libmiglayout-java (4.2-3) over (4.2-1) ... Preparing to unpack .../libmime-tools-perl_5.508-1_all.deb ... Unpacking libmime-tools-perl (5.508-1) over (5.505-1) ... Preparing to unpack .../libmldbm-perl_2.05-2_all.deb ... Unpacking libmldbm-perl (2.05-2) over (2.05-1) ... Preparing to unpack .../libmng1_1.0.10+dfsg-3.1+b5_amd64.deb ... Unpacking libmng1:amd64 (1.0.10+dfsg-3.1+b5) over (1.0.10+dfsg-3.1+b3) ... Preparing to unpack .../libmodule-build-perl_0.422000-1_all.deb ... Unpacking libmodule-build-perl (0.422000-1) over (0.421000-2+deb8u1) ... Preparing to unpack .../libmodule-pluggable-perl_5.2-1_all.deb ... Unpacking libmodule-pluggable-perl (5.2-1) over (5.1-1) ... Preparing to unpack .../libmodule-signature-perl_0.81-1_all.deb ... Unpacking libmodule-signature-perl (0.81-1) over (0.73-1+deb8u2) ... Preparing to unpack .../libmpdec2_2.4.2-1_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-1) over (2.4.1-1) ... Preparing to unpack .../libmpfr4_3.1.5-1_amd64.deb ... Unpacking libmpfr4:amd64 (3.1.5-1) over (3.1.2-2) ... Preparing to unpack .../libmysql-java_5.1.49-0+deb9u1_all.deb ... Unpacking libmysql-java (5.1.49-0+deb9u1) over (5.1.42-1~deb8u1) ... Preparing to unpack .../libnet-http-perl_6.12-1_all.deb ... Unpacking libnet-http-perl (6.12-1) over (6.07-1) ... Preparing to unpack .../libnotify4_0.7.7-2_amd64.deb ... Unpacking libnotify4:amd64 (0.7.7-2) over (0.7.6-2) ... Preparing to unpack .../libnuma1_2.0.11-2.1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.11-2.1) over (2.0.10-1) ... Preparing to unpack .../libole-storage-lite-perl_0.19-1+deb9u1_all.deb ... Unpacking libole-storage-lite-perl (0.19-1+deb9u1) over (0.19-1) ... Preparing to unpack .../liborc-0.4-0_1%3a0.4.26-2_amd64.deb ... Unpacking liborc-0.4-0:amd64 (1:0.4.26-2) over (1:0.4.22-1) ... Preparing to unpack .../liboro-java_2.0.8a-12_all.deb ... Unpacking liboro-java (2.0.8a-12) over (2.0.8a-9) ... Preparing to unpack .../libpackage-constants-perl_0.06-1_all.deb ... Unpacking libpackage-constants-perl (0.06-1) over (0.04-1) ... Preparing to unpack .../libpaper1_1.1.24+nmu5_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu5) over (1.1.24+nmu4) ... Preparing to unpack .../libpaper-utils_1.1.24+nmu5_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu5) over (1.1.24+nmu4) ... Preparing to unpack .../libpathplan4_2.38.0-17_amd64.deb ... Unpacking libpathplan4 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libpcsclite1_1.8.20-1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.20-1) over (1.8.13-1+deb8u1) ... Preparing to unpack .../libperl4-corelibs-perl_0.003-2+deb9u1_all.deb ... Unpacking libperl4-corelibs-perl (0.003-2+deb9u1) over (0.003-1) ... Preparing to unpack .../libpixman-1-0_0.34.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.34.0-1) over (0.32.6-3) ... Preparing to unpack .../libpod-latex-perl_0.61-2_all.deb ... Leaving 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Leaving 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-2) over (0.61-1) ... Preparing to unpack .../libpolkit-backend-1-0_0.105-18+deb9u1_amd64.deb ... Unpacking libpolkit-backend-1-0:amd64 (0.105-18+deb9u1) over (0.105-15~deb8u2) ... Preparing to unpack .../libpolkit-agent-1-0_0.105-18+deb9u1_amd64.deb ... Unpacking libpolkit-agent-1-0:amd64 (0.105-18+deb9u1) over (0.105-15~deb8u2) ... Preparing to unpack .../libpolkit-gobject-1-0_0.105-18+deb9u1_amd64.deb ... Unpacking libpolkit-gobject-1-0:amd64 (0.105-18+deb9u1) over (0.105-15~deb8u2) ... Preparing to unpack .../policykit-1_0.105-18+deb9u1_amd64.deb ... Unpacking policykit-1 (0.105-18+deb9u1) over (0.105-15~deb8u2) ... Preparing to unpack .../libpotrace0_1.13-3_amd64.deb ... Unpacking libpotrace0 (1.13-3) over (1.12-1+deb8u1) ... Preparing to unpack .../libreadonly-perl_2.050-1_all.deb ... Unpacking libreadonly-perl (2.050-1) over (2.000-1) ... Preparing to unpack .../libregexp-common-perl_2016060801-1_all.deb ... Unpacking libregexp-common-perl (2016060801-1) over (2013031301-1) ... Preparing to unpack .../libsoup2.4-1_2.56.0-2+deb9u2_amd64.deb ... Unpacking libsoup2.4-1:amd64 (2.56.0-2+deb9u2) over (2.48.0-1+deb8u1) ... Preparing to unpack .../libsoup-gnome2.4-1_2.56.0-2+deb9u2_amd64.deb ... Unpacking libsoup-gnome2.4-1:amd64 (2.56.0-2+deb9u2) over (2.48.0-1+deb8u1) ... Preparing to unpack .../librest-0.7-0_0.8.0-2_amd64.deb ... Unpacking librest-0.7-0:amd64 (0.8.0-2) over (0.7.92-3) ... Preparing to unpack .../librsvg2-common_2.40.16-1+b1_amd64.deb ... Unpacking librsvg2-common:amd64 (2.40.16-1+b1) over (2.40.5-1+deb8u2) ... Preparing to unpack .../librsvg2-2_2.40.16-1+b1_amd64.deb ... Unpacking librsvg2-2:amd64 (2.40.16-1+b1) over (2.40.5-1+deb8u2) ... Preparing to unpack .../libsane-extras_1.0.22.4_amd64.deb ... Unpacking libsane-extras:amd64 (1.0.22.4) over (1.0.22.3) ... Preparing to unpack .../libsane-extras-common_1.0.22.4_amd64.deb ... Unpacking libsane-extras-common (1.0.22.4) over (1.0.22.3) ... Preparing to unpack .../libsctp1_1.0.17+dfsg-1+b1_amd64.deb ... Unpacking libsctp1:amd64 (1.0.17+dfsg-1+b1) over (1.0.16+dfsg-2) ... Preparing to unpack .../libsdl1.2debian_1.2.15+dfsg1-4_amd64.deb ... Unpacking libsdl1.2debian:amd64 (1.2.15+dfsg1-4) over (1.2.15-10+b1) ... Preparing to unpack .../libsigsegv2_2.10-5_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-5) over (2.10-4+b1) ... Preparing to unpack .../libsndfile1_1.0.27-3_amd64.deb ... Unpacking libsndfile1:amd64 (1.0.27-3) over (1.0.25-9.1+deb8u1) ... Preparing to unpack .../libsnp-sites1_2.3.2-1_amd64.deb ... Unpacking libsnp-sites1 (2.3.2-1) over (1.5.0-1) ... Preparing to unpack .../libsoap-lite-perl_1.20-1_all.deb ... Unpacking libsoap-lite-perl (1.20-1) over (1.11-1) ... Preparing to unpack .../libwww-perl_6.15-1_all.deb ... Unpacking libwww-perl (6.15-1) over (6.08-1) ... Preparing to unpack .../libsoftware-license-perl_0.103012-1_all.deb ... Unpacking libsoftware-license-perl (0.103012-1) over (0.103010-3) ... Preparing to unpack .../libsprng2_2.0a-10_amd64.deb ... Unpacking libsprng2 (2.0a-10) over (2.0a-8) ... Preparing to unpack .../libsqlite0_2.8.17-14_amd64.deb ... Unpacking libsqlite0 (2.8.17-14) over (2.8.17-12) ... Preparing to unpack .../libsquizz_0.99c+dfsg-1_amd64.deb ... Unpacking libsquizz (0.99c+dfsg-1) over (0.99b+dfsg-3) ... Preparing to unpack .../libssh2-1_1.7.0-1+deb9u1_amd64.deb ... Unpacking libssh2-1:amd64 (1.7.0-1+deb9u1) over (1.4.3-4.1+deb8u1) ... Preparing to unpack .../libstatistics-descriptive-perl_3.0612-1_all.deb ... Unpacking libstatistics-descriptive-perl (3.0612-1) over (3.0607-1) ... Preparing to unpack .../libsvg-perl_2.64-1_all.deb ... Unpacking libsvg-perl (2.64-1) over (2.59-1) ... Preparing to unpack .../libsvm3_3.21+ds-1.1_amd64.deb ... Unpacking libsvm3 (3.21+ds-1.1) over (3.12-1) ... Preparing to unpack .../libsynctex1_2016.20160513.41080.dfsg-2+deb9u1_amd64.deb ... Unpacking libsynctex1:amd64 (2016.20160513.41080.dfsg-2+deb9u1) over (2014.20140926.35254-6) ... Preparing to unpack .../libtcl8.5_8.5.19-2+b1_amd64.deb ... Unpacking libtcl8.5:amd64 (8.5.19-2+b1) over (8.5.17-1) ... Preparing to unpack .../libterm-ui-perl_0.46-1_all.deb ... Unpacking libterm-ui-perl (0.46-1) over (0.42-1) ... Preparing to unpack .../libtest-pod-perl_1.51-1_all.deb ... Unpacking libtest-pod-perl (1.51-1) over (1.48-1) ... Preparing to unpack .../libtext-format-perl_0.60-1_all.deb ... Unpacking libtext-format-perl (0.60-1) over (0.59-1) ... Preparing to unpack .../libtheora0_1.1.1+dfsg.1-14+b1_amd64.deb ... Unpacking libtheora0:amd64 (1.1.1+dfsg.1-14+b1) over (1.1.1+dfsg.1-6) ... Preparing to unpack .../libtie-ixhash-perl_1.23-2_all.deb ... Unpacking libtie-ixhash-perl (1.23-2) over (1.23-1) ... Preparing to unpack .../libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) over (2.1-3.1) ... Preparing to unpack .../libtiff5_4.0.8-2+deb9u5_amd64.deb ... Unpacking libtiff5:amd64 (4.0.8-2+deb9u5) over (4.0.3-12.3+deb8u5) ... Preparing to unpack .../libtk8.5_8.5.19-1+b1_amd64.deb ... Unpacking libtk8.5:amd64 (8.5.19-1+b1) over (8.5.17-1) ... Preparing to unpack .../libtree-dagnode-perl_1.29-1_all.deb ... Unpacking libtree-dagnode-perl (1.29-1) over (1.22-1) ... Preparing to unpack .../libtry-tiny-perl_0.28-1_all.deb ... Unpacking libtry-tiny-perl (0.28-1) over (0.22-1) ... Preparing to unpack .../libunwind8_1.1-4.1_amd64.deb ... Unpacking libunwind8 (1.1-4.1) over (1.1-3.2) ... Preparing to unpack .../libutempter0_1.1.6-3_amd64.deb ... Unpacking libutempter0:amd64 (1.1.6-3) over (1.1.5-4) ... Preparing to unpack .../libv4l-0_1.12.3-1_amd64.deb ... Unpacking libv4l-0:amd64 (1.12.3-1) over (1.6.0-2) ... Preparing to unpack .../libv4lconvert0_1.12.3-1_amd64.deb ... Unpacking libv4lconvert0:amd64 (1.12.3-1) over (1.6.0-2) ... Preparing to unpack .../libvisual-0.4-0_0.4.0-10_amd64.deb ... Unpacking libvisual-0.4-0:amd64 (0.4.0-10) over (0.4.0-6) ... Preparing to unpack .../libxml-simple-perl_2.22-1_all.deb ... Unpacking libxml-simple-perl (2.22-1) over (2.20-1) ... Preparing to unpack .../libvm-ec2-perl_1.28-2_all.deb ... Unpacking libvm-ec2-perl (1.28-2) over (1.28-1) ... Preparing to unpack .../libvte9_1%3a0.28.2-5+b2_amd64.deb ... Unpacking libvte9 (1:0.28.2-5+b2) over (1:0.28.2-5) ... Preparing to unpack .../libwayland-client0_1.12.0-1+deb9u1_amd64.deb ... Unpacking libwayland-client0:amd64 (1.12.0-1+deb9u1) over (1.6.0-2) ... Preparing to unpack .../libwayland-cursor0_1.12.0-1+deb9u1_amd64.deb ... Unpacking libwayland-cursor0:amd64 (1.12.0-1+deb9u1) over (1.6.0-2) ... Preparing to unpack .../libx11-protocol-perl_0.56-7_all.deb ... Unpacking libx11-protocol-perl (0.56-7) over (0.56-6) ... Preparing to unpack .../libxcb-render0_1.12-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxcb-shm0_1.12-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.12-1) over (1.10-3+b1) ... Preparing to unpack .../libxcursor1_1%3a1.1.14-1+deb9u2_amd64.deb ... Unpacking libxcursor1:amd64 (1:1.1.14-1+deb9u2) over (1:1.1.14-1+deb8u1) ... Preparing to unpack .../libxdot4_2.38.0-17_amd64.deb ... Unpacking libxdot4 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../libxkbcommon0_0.7.1-2~deb9u1_amd64.deb ... Unpacking libxkbcommon0:amd64 (0.7.1-2~deb9u1) over (0.4.3-2) ... Preparing to unpack .../libxml-dom-perl_1.44-2_all.deb ... Unpacking libxml-dom-perl (1.44-2) over (1.44-1) ... Preparing to unpack .../libxml-dom-xpath-perl_0.14-2_all.deb ... Unpacking libxml-dom-xpath-perl (0.14-2) over (0.14-1) ... Preparing to unpack .../libxml-sax-writer-perl_0.56-1_all.deb ... Unpacking libxml-sax-writer-perl (0.56-1) over (0.54-1) ... Preparing to unpack .../libxslt1.1_1.1.29-2.1+deb9u2_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.29-2.1+deb9u2) over (1.1.28-2+deb8u3) ... Preparing to unpack .../libyaml-0-2_0.1.7-2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.7-2) over (0.1.6-3) ... Preparing to unpack .../libyaml-tiny-perl_1.70-1_all.deb ... Unpacking libyaml-tiny-perl (1.70-1) over (1.64-1) ... Preparing to unpack .../libzzip-0-13_0.13.62-3.2~deb9u1_amd64.deb ... Unpacking libzzip-0-13:amd64 (0.13.62-3.2~deb9u1) over (0.13.62-3+deb8u1) ... Preparing to unpack .../lksctp-tools_1.0.17+dfsg-1+b1_amd64.deb ... Unpacking lksctp-tools (1.0.17+dfsg-1+b1) over (1.0.16+dfsg-2) ... Preparing to unpack .../loki_2.4.7.4-6+b1_amd64.deb ... Unpacking loki (2.4.7.4-6+b1) over (2.4.7.4-5) ... Preparing to unpack .../libgenometools0_1.5.9+ds-4_amd64.deb ... Unpacking libgenometools0 (1.5.9+ds-4) over (1.5.3-2) ... Preparing to unpack .../ltrsift_1.0.2-7_amd64.deb ... Unpacking ltrsift (1.0.2-7) over (1.0.2-1) ... Preparing to unpack .../macs_2.1.1.20160309-1_amd64.deb ... Unpacking macs (2.1.1.20160309-1) over (2.0.9.1-1) ... Preparing to unpack .../mafft_7.307-1_amd64.deb ... Unpacking mafft (7.307-1) over (7.205-1) ... Preparing to unpack .../manpages-dev_4.10-2_all.deb ... Unpacking manpages-dev (4.10-2) over (3.74-1) ... Preparing to unpack .../melting_4.3.1+dfsg-2+b1_amd64.deb ... Unpacking melting (4.3.1+dfsg-2+b1) over (4.3.1+dfsg-1) ... Preparing to unpack .../metastudent_2.0.1-4_all.deb ... Unpacking metastudent (2.0.1-4) over (1.0.11-2) ... Preparing to unpack .../metastudent-data_2.0.1-2_all.deb ... Unpacking metastudent-data (2.0.1-2) over (1.0.1-2) ... Preparing to unpack .../metastudent-data-2_1.0.0-2_all.deb ... Unpacking metastudent-data-2 (1.0.0-2) over (1.0.0-1) ... Preparing to unpack .../nast-ier_20101212+dfsg1-1+b1_amd64.deb ... Unpacking nast-ier (20101212+dfsg1-1+b1) over (20101212+dfsg-1) ... Preparing to unpack .../wigeon_20101212+dfsg1-1_all.deb ... Unpacking wigeon (20101212+dfsg1-1) over (20101212+dfsg-1) ... Preparing to unpack .../microbiomeutil_20101212+dfsg1-1_all.deb ... Unpacking microbiomeutil (20101212+dfsg1-1) over (20101212+dfsg-1) ... Preparing to unpack .../archives/mipe_1.1-5_all.deb ... Unpacking mipe (1.1-5) over (1.1-4) ... Preparing to unpack .../mknfonts.tool_0.5-11+b5_amd64.deb ... Unpacking mknfonts.tool (0.5-11+b5) over (0.5-11+b4) ... Preparing to unpack .../mlv-smile_1.47-4+b1_amd64.deb ... Unpacking mlv-smile (1.47-4+b1) over (1.47-3) ... Preparing to unpack .../muscle_1%3a3.8.31+dfsg-2_amd64.deb ... Unpacking muscle (1:3.8.31+dfsg-2) over (1:3.8.31-1) ... Preparing to unpack .../mysql-common_5.8+1.0.2_all.deb ... Unpacking mysql-common (5.8+1.0.2) over (5.5.60-0+deb8u1) ... Preparing to unpack .../ncoils_2002-4+b1_amd64.deb ... Unpacking ncoils (2002-4+b1) over (2002-4) ... Preparing to unpack .../njplot_2.4-7_amd64.deb ... Unpacking njplot (2.4-7) over (2.4-2+b1) ... Preparing to unpack .../perlprimer_1.2.3-1_all.deb ... Unpacking perlprimer (1.2.3-1) over (1.1.21-2) ... Preparing to unpack .../phylip_1%3a3.696+dfsg-5_amd64.deb ... Unpacking phylip (1:3.696+dfsg-5) over (1:3.696+dfsg-1) ... Preparing to unpack .../python-tk_2.7.13-1_amd64.deb ... Unpacking python-tk (2.7.13-1) over (2.7.8-2+b1) ... Preparing to unpack .../plasmidomics_0.2.0-5_all.deb ... Unpacking plasmidomics (0.2.0-5) over (0.2.0-3) ... Preparing to unpack .../po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) over (1.0.16+nmu3) ... Preparing to unpack .../poa_2.0+20060928-4+b1_amd64.deb ... Unpacking poa (2.0+20060928-4+b1) over (2.0+20060928-3) ... Preparing to unpack .../prerex_6.5.3-1+b2_amd64.deb ... Unpacking prerex (6.5.3-1+b2) over (6.5.3-1) ... Preparing to unpack .../proalign_0.603-2_amd64.deb ... Unpacking proalign (0.603-2) over (0.603-1) ... Preparing to unpack .../proda_1.0-10_amd64.deb ... Unpacking proda (1.0-10) over (1.0-8) ... Preparing to unpack .../prodigal_1%3a2.6.3-1+b1_amd64.deb ... Unpacking prodigal (1:2.6.3-1+b1) over (1:2.6.1-1) ... Preparing to unpack .../ps2eps_1.68+binaryfree-2_amd64.deb ... Unpacking ps2eps (1.68+binaryfree-2) over (1.68+binaryfree-1) ... Preparing to unpack .../python-biopython-doc_1.68+dfsg-3_all.deb ... Unpacking python-biopython-doc (1.68+dfsg-3) over (1.64+dfsg-5) ... Preparing to unpack .../python-cairo_1.8.8-2.2_amd64.deb ... Unpacking python-cairo (1.8.8-2.2) over (1.8.8-1+b2) ... Preparing to unpack .../python-pkg-resources_33.1.1-1_all.deb ... Unpacking python-pkg-resources (33.1.1-1) over (5.5.1-1) ... Preparing to unpack .../python-chardet_2.3.0-2_all.deb ... Unpacking python-chardet (2.3.0-2) over (2.3.0-1) ... Preparing to unpack .../python-crypto_2.6.1-7_amd64.deb ... Unpacking python-crypto (2.6.1-7) over (2.6.1-5+deb8u1) ... Preparing to unpack .../python-six_1.10.0-3_all.deb ... Unpacking python-six (1.10.0-3) over (1.8.0-1) ... Preparing to unpack .../python-dateutil_2.5.3-2_all.deb ... Unpacking python-dateutil (2.5.3-2) over (2.2-2) ... Preparing to unpack .../python-decorator_4.0.11-1_all.deb ... Unpacking python-decorator (4.0.11-1) over (3.4.0-2) ... Preparing to unpack .../python-egenix-mxtools_3.2.9-1_amd64.deb ... Unpacking python-egenix-mxtools (3.2.9-1) over (3.2.8-1) ... Preparing to unpack .../python-egenix-mxdatetime_3.2.9-1_amd64.deb ... Unpacking python-egenix-mxdatetime (3.2.9-1) over (3.2.8-1) ... Preparing to unpack .../python-gobject-2_2.28.6-13_amd64.deb ... Unpacking python-gobject-2 (2.28.6-13) over (2.28.6-12+b1) ... Preparing to unpack .../python-glade2_2.24.0-5.1_amd64.deb ... Unpacking python-glade2 (2.24.0-5.1) over (2.24.0-4) ... Preparing to unpack .../python-gtk2_2.24.0-5.1_amd64.deb ... Unpacking python-gtk2 (2.24.0-5.1) over (2.24.0-4) ... Preparing to unpack .../python-gmpy_1.17-3_amd64.deb ... Unpacking python-gmpy (1.17-3) over (1.15-1) ... Preparing to unpack .../python-imaging_4.0.0-4+deb9u1_all.deb ... Unpacking python-imaging (4.0.0-4+deb9u1) over (2.6.1-2+deb8u3) ... Preparing to unpack .../python-markupsafe_0.23-3_amd64.deb ... Unpacking python-markupsafe (0.23-3) over (0.23-1+b1) ... Preparing to unpack .../python-jinja2_2.8-1_all.deb ... Unpacking python-jinja2 (2.8-1) over (2.7.3-1) ... Preparing to unpack .../python-mako_1.0.6+ds1-2_all.deb ... Unpacking python-mako (1.0.6+ds1-2) over (1.0.0+dfsg-0.1) ... Preparing to unpack .../python-mpmath_0.19-3_all.deb ... Unpacking python-mpmath (0.19-3) over (0.19-1) ... Preparing to unpack .../python-multipletau_0.1.7+ds-1_all.deb ... Unpacking python-multipletau (0.1.7+ds-1) over (0.1.4-1) ... Preparing to unpack .../python-nose_1.3.7-2_all.deb ... Unpacking python-nose (1.3.7-2) over (1.3.4-1) ... Preparing to unpack .../python-pyglet_1.1.4.dfsg-3_all.deb ... Unpacking python-pyglet (1.1.4.dfsg-3) over (1.1.4.dfsg-2) ... Preparing to unpack .../python-pygments_2.2.0+dfsg-1_all.deb ... Unpacking python-pygments (2.2.0+dfsg-1) over (2.0.1+dfsg-1.1+deb8u1) ... Preparing to unpack .../python-pyparsing_2.1.10+dfsg1-1_all.deb ... Unpacking python-pyparsing (2.1.10+dfsg1-1) over (2.0.3+dfsg1-1) ... Preparing to unpack .../python-pyrex_0.9.9-1_all.deb ... Unpacking python-pyrex (0.9.9-1) over (0.9.8.5-2.1) ... Preparing to unpack .../python-pysqlite2_2.7.0-1_amd64.deb ... Unpacking python-pysqlite2 (2.7.0-1) over (2.6.3-3) ... Preparing to unpack .../python-qcli_0.1.1-1_amd64.deb ... Unpacking python-qcli (0.1.1-1) over (0.1.0-1) ... Preparing to unpack .../python-renderpm_3.3.0-2+deb9u1_amd64.deb ... Unpacking python-renderpm:amd64 (3.3.0-2+deb9u1) over (3.1.8-3+deb8u1) ... Preparing to unpack .../python-sqlalchemy-ext_1.0.15+ds1-1_amd64.deb ... Unpacking python-sqlalchemy-ext (1.0.15+ds1-1) over (0.9.8+dfsg-0.1) ... Preparing to unpack .../python-sqlalchemy_1.0.15+ds1-1_all.deb ... Unpacking python-sqlalchemy (1.0.15+ds1-1) over (0.9.8+dfsg-0.1) ... Preparing to unpack .../python-tz_2016.7-0.3_all.deb ... Unpacking python-tz (2016.7-0.3) over (2012c+dfsg-0.1) ... Preparing to unpack .../python-wxversion_3.0.2.0+dfsg-4_all.deb ... Unpacking python-wxversion (3.0.2.0+dfsg-4) over (3.0.1.1+dfsg-2) ... Preparing to unpack .../python-yaml_3.12-1_amd64.deb ... Unpacking python-yaml (3.12-1) over (3.11-2) ... Preparing to unpack .../python3-nose_1.3.7-2_all.deb ... Unpacking python3-nose (1.3.7-2) over (1.3.4-1) ... Preparing to unpack .../qtcore4-l10n_4%3a4.8.7+dfsg-11_all.deb ... Unpacking qtcore4-l10n (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../r-cran-fastcluster_1.1.22-1_amd64.deb ... Unpacking r-cran-fastcluster (1.1.22-1) over (1.1.13-1) ... Preparing to unpack .../r-cran-permute_0.9-4-1_all.deb ... Unpacking r-cran-permute (0.9-4-1) over (0.8-3-1) ... Preparing to unpack .../r-doc-html_3.3.3-1_all.deb ... Unpacking r-doc-html (3.3.3-1) over (3.1.1-1+deb8u1) ... Preparing to unpack .../raster3d_3.0-3-2+b1_amd64.deb ... Unpacking raster3d (3.0-3-2+b1) over (3.0-3-1) ... Preparing to unpack .../raxml_8.2.9+dfsg-1+b1_amd64.deb ... Unpacking raxml (8.2.9+dfsg-1+b1) over (8.1.1-3) ... Preparing to unpack .../readseq_1-11+b1_amd64.deb ... Unpacking readseq (1-11+b1) over (1-11) ... Preparing to unpack .../archives/rename_0.20-4_all.deb ... Unpacking rename (0.20-4) over (0.20-3) ... Preparing to unpack .../rnahybrid_2.1.2-1+b1_amd64.deb ... Unpacking rnahybrid (2.1.2-1+b1) over (2.1.1-2) ... Preparing to unpack .../rsync_3.1.2-1+deb9u2_amd64.deb ... Unpacking rsync (3.1.2-1+deb9u2) over (3.1.1-3+deb8u1) ... Preparing to unpack .../archives/rtax_0.984-5_all.deb ... Unpacking rtax (0.984-5) over (0.984-2) ... Preparing to unpack .../rubygems-integration_1.11_all.deb ... Unpacking rubygems-integration (1.11) over (1.8) ... Preparing to unpack .../archives/seqtk_1.2-1_amd64.deb ... Unpacking seqtk (1.2-1) over (1.0-1) ... Preparing to unpack .../sibsim4_0.20-2+b1_amd64.deb ... Unpacking sibsim4 (0.20-2+b1) over (0.20-2) ... Preparing to unpack .../sigma-align_1.1.3-4+b1_amd64.deb ... Unpacking sigma-align (1.1.3-4+b1) over (1.1.3-3) ... Preparing to unpack .../sim4_0.0.20121010-4_amd64.deb ... Unpacking sim4 (0.0.20121010-4) over (0.0.20121010-1) ... Preparing to unpack .../smalt_0.7.6-6_amd64.deb ... Unpacking smalt (0.7.6-6) over (0.7.6-4) ... Preparing to unpack .../snp-sites_2.3.2-1_amd64.deb ... Unpacking snp-sites (2.3.2-1) over (1.5.0-1) ... Preparing to unpack .../soapdenovo_1.05-3_amd64.deb ... Unpacking soapdenovo (1.05-3) over (1.05-2) ... Preparing to unpack .../sphinx-doc_1.4.9-2_all.deb ... Unpacking sphinx-doc (1.4.9-2) over (1.2.3+dfsg-1) ... Preparing to unpack .../squizz_0.99c+dfsg-1_amd64.deb ... Unpacking squizz (0.99c+dfsg-1) over (0.99b+dfsg-3) ... Preparing to unpack .../archives/ssake_3.8.4-1_all.deb ... Unpacking ssake (3.8.4-1) over (3.8.2-1) ... Preparing to unpack .../ssl-cert_1.0.39_all.deb ... Unpacking ssl-cert (1.0.39) over (1.0.35) ... Preparing to unpack .../archives/tcl_8.6.0+9_amd64.deb ... Unpacking tcl (8.6.0+9) over (8.6.0+8) ... Preparing to unpack .../tcl8.6_8.6.6+dfsg-1+b1_amd64.deb ... Unpacking tcl8.6 (8.6.6+dfsg-1+b1) over (8.6.2+dfsg-2) ... Preparing to unpack .../tcllib_1.18-dfsg-3_all.deb ... Unpacking tcllib (1.18-dfsg-3) over (1.16-dfsg-2) ... Preparing to unpack .../tcpd_7.6.q-26_amd64.deb ... Unpacking tcpd (7.6.q-26) over (7.6.q-25) ... Preparing to unpack .../archives/tk_8.6.0+9_amd64.deb ... Unpacking tk (8.6.0+9) over (8.6.0+8) ... Preparing to unpack .../tk8.6_8.6.6-1+b1_amd64.deb ... Unpacking tk8.6 (8.6.6-1+b1) over (8.6.2-1) ... Preparing to unpack .../tk-table_2.10-3_amd64.deb ... Unpacking tk-table:amd64 (2.10-3) over (2.10-2) ... Preparing to unpack .../archives/tklib_0.6-3_all.deb ... Unpacking tklib (0.6-3) over (0.6-1+deb8u1) ... Preparing to unpack .../tm-align_20160521+dfsg-2_amd64.deb ... Unpacking tm-align (20160521+dfsg-2) over (20140601+dfsg-1) ... Preparing to unpack .../tree-puzzle_5.2-8+b3_amd64.deb ... Unpacking tree-puzzle (5.2-8+b3) over (5.2-7+b1) ... Preparing to unpack .../tree-puzzle-doc_5.2-8_all.deb ... Unpacking tree-puzzle-doc (5.2-8) over (5.2-7) ... Preparing to unpack .../trimmomatic_0.36+dfsg-1_all.deb ... Unpacking trimmomatic (0.36+dfsg-1) over (0.32+dfsg-4) ... Preparing to unpack .../unzip_6.0-21+deb9u2_amd64.deb ... Unpacking unzip (6.0-21+deb9u2) over (6.0-16+deb8u3) ... Preparing to unpack .../velvet_1.2.10+dfsg1-3+b1_amd64.deb ... Unpacking velvet (1.2.10+dfsg1-3+b1) over (1.2.10+dfsg1-1) ... Preparing to unpack .../velvetoptimiser_2.2.5-5_all.deb ... Unpacking velvetoptimiser (2.2.5-5) over (2.2.5-2) ... Preparing to unpack .../wise_2.4.1-19_amd64.deb ... Unpacking wise (2.4.1-19) over (2.4.1-17) ... Preparing to unpack .../wise-data_2.4.1-19_all.deb ... Unpacking wise-data (2.4.1-19) over (2.4.1-17) ... Preparing to unpack .../x11-xserver-utils_7.7+7+b1_amd64.deb ... Unpacking x11-xserver-utils (7.7+7+b1) over (7.7+3+b1) ... Preparing to unpack .../xauth_1%3a1.0.9-1+b2_amd64.deb ... Unpacking xauth (1:1.0.9-1+b2) over (1:1.0.9-1) ... Preparing to unpack .../xdg-user-dirs_0.15-2+b1_amd64.deb ... Unpacking xdg-user-dirs (0.15-2+b1) over (0.15-2) ... Preparing to unpack .../xdg-utils_1.1.1-1+deb9u2_all.deb ... Unpacking xdg-utils (1.1.1-1+deb9u2) over (1.1.0~rc1+git20111210-7.4+deb8u1) ... Preparing to unpack .../xsltproc_1.1.29-2.1+deb9u2_amd64.deb ... Unpacking xsltproc (1.1.29-2.1+deb9u2) over (1.1.28-2+deb8u3) ... Preparing to unpack .../archives/xterm_327-2_amd64.deb ... Unpacking xterm (327-2) over (312-2) ... Preparing to unpack .../zip_3.0-11+b1_amd64.deb ... Unpacking zip (3.0-11+b1) over (3.0-8) ... Preparing to unpack .../acedb-other_4.9.39+dfsg.02-1_amd64.deb ... Unpacking acedb-other (4.9.39+dfsg.02-1) over (4.9.39+dfsg.01-5) ... Preparing to unpack .../ant-contrib_1.0~b3+svn177-9_all.deb ... Unpacking ant-contrib (1.0~b3+svn177-9) over (1.0~b3+svn177-6) ... Preparing to unpack .../bauble_0.9.7-2.1_all.deb ... Unpacking bauble (0.9.7-2.1) over (0.9.7-2) ... Preparing to unpack .../concavity_0.1+dfsg.1-1_amd64.deb ... Unpacking concavity (0.1+dfsg.1-1) over (0.1-2) ... Preparing to unpack .../conservation-code_20110309.0-5_all.deb ... Unpacking conservation-code (20110309.0-5) over (20110309.0-3) ... Preparing to unpack .../disulfinder-data_1.2.11-6_all.deb ... Unpacking disulfinder-data (1.2.11-6) over (1.2.11-4) ... Preparing to unpack .../fasttree_2.1.9-1_amd64.deb ... Unpacking fasttree (2.1.9-1) over (2.1.7-2) ... Preparing to unpack .../fonts-stix_1.1.1-4_all.deb ... Unpacking fonts-stix (1.1.1-4) over (1.1.1-1) ... Preparing to unpack .../icedtea-netx-common_1.6.2-3.1+deb9u1_all.deb ... Unpacking icedtea-netx-common (1.6.2-3.1+deb9u1) over (1.5.3-1) ... Preparing to unpack .../libapache-mime4j-java_0.7.2-4_all.deb ... Unpacking libapache-mime4j-java (0.7.2-4) over (0.7.2-3) ... Preparing to unpack .../libcbf0_0.9.2.2-1+b1_amd64.deb ... Unpacking libcbf0:amd64 (0.9.2.2-1+b1) over (0.9.2.2-1) ... Preparing to unpack .../libcvector2_1.0.3.1-1.1+b2_amd64.deb ... Unpacking libcvector2:amd64 (1.0.3.1-1.1+b2) over (1.0.3.1-1.1) ... Preparing to unpack .../libcneartree5_3.1.1-2.1+b2_amd64.deb ... Unpacking libcneartree5:amd64 (3.1.1-2.1+b2) over (3.1.1-2.1) ... Preparing to unpack .../libconfig-inifiles-perl_2.94-1_all.deb ... Unpacking libconfig-inifiles-perl (2.94-1) over (2.83-3) ... Preparing to unpack .../libcqrlib2_1.1.2-2.1+b2_amd64.deb ... Unpacking libcqrlib2:amd64 (1.1.2-2.1+b2) over (1.1.2-2.1) ... Preparing to unpack .../libflite1_2.0.0-release-3+b1_amd64.deb ... Unpacking libflite1:amd64 (2.0.0-release-3+b1) over (1.4-release-12) ... Preparing to unpack .../libhwloc5_1.11.5-1_amd64.deb ... Unpacking libhwloc5:amd64 (1.11.5-1) over (1.10.0-3) ... Preparing to unpack .../ocl-icd-libopencl1_2.2.11-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1) over (2.2.3-1+deb8u1) ... Preparing to unpack .../libhwloc-plugins_1.11.5-1_amd64.deb ... Unpacking libhwloc-plugins (1.11.5-1) over (1.10.0-3) ... Preparing to unpack .../libmpc3_1.0.3-1+b2_amd64.deb ... Unpacking libmpc3:amd64 (1.0.3-1+b2) over (1.0.2-1) ... Preparing to unpack .../librg-exception-perl_1.0.3-2_all.deb ... Unpacking librg-exception-perl (1.0.3-2) over (1.0.3-1) ... Preparing to unpack .../librg-reprof-bundle-perl_1.0.1-4_all.deb ... Unpacking librg-reprof-bundle-perl (1.0.1-4) over (1.0.1-1) ... Preparing to unpack .../profphd-utils_1.0.10-3+b1_amd64.deb ... Unpacking profphd-utils (1.0.10-3+b1) over (1.0.10-1) ... Preparing to unpack .../librg-utils-perl_1.0.43-4_all.deb ... Unpacking librg-utils-perl (1.0.43-4) over (1.0.43-2) ... Preparing to unpack .../libset-scalar-perl_1.29-2_all.deb ... Unpacking libset-scalar-perl (1.29-2) over (1.29-1) ... Preparing to unpack .../mpi-default-bin_1.8_amd64.deb ... Unpacking mpi-default-bin (1.8) over (1.0.2+nmu2) ... Preparing to unpack .../ncbi-seg_0.0.20000620-3+b1_amd64.deb ... Unpacking ncbi-seg (0.0.20000620-3+b1) over (0.0.20000620-2) ... Preparing to unpack .../neobio_0.0.20030929-2_all.deb ... Unpacking neobio (0.0.20030929-2) over (0.0.20030929-1.1) ... Preparing to unpack .../profnet-norsnet_1.0.22-4_amd64.deb ... Unpacking profnet-norsnet (1.0.22-4) over (1.0.22-2) ... Preparing to unpack .../norsnet_1.0.17-2_all.deb ... Unpacking norsnet (1.0.17-2) over (1.0.17-1) ... Preparing to unpack .../archives/norsp_1.0.6-2_all.deb ... Unpacking norsp (1.0.6-2) over (1.0.6-1) ... Preparing to unpack .../predictnls_1.0.20-3_all.deb ... Unpacking predictnls (1.0.20-3) over (1.0.20-1) ... Preparing to unpack .../profnet-bval_1.0.22-4_amd64.deb ... Unpacking profnet-bval (1.0.22-4) over (1.0.22-2) ... Preparing to unpack .../profbval_1.0.22-4_all.deb ... Unpacking profbval (1.0.22-4) over (1.0.22-1) ... Preparing to unpack .../profnet-isis_1.0.22-4_amd64.deb ... Unpacking profnet-isis (1.0.22-4) over (1.0.22-2) ... Preparing to unpack .../profisis_1.0.11-3_all.deb ... Unpacking profisis (1.0.11-3) over (1.0.11-1) ... Preparing to unpack .../profnet-chop_1.0.22-4_amd64.deb ... Unpacking profnet-chop (1.0.22-4) over (1.0.22-2) ... Preparing to unpack .../profnet-con_1.0.22-4_amd64.deb ... Unpacking profnet-con (1.0.22-4) over (1.0.22-2) ... Preparing to unpack .../profnet-md_1.0.22-4_amd64.deb ... Unpacking profnet-md (1.0.22-4) over (1.0.22-2) ... Preparing to unpack .../profnet-prof_1.0.22-4_amd64.deb ... Unpacking profnet-prof (1.0.22-4) over (1.0.22-2) ... Preparing to unpack .../profnet-snapfun_1.0.22-4_amd64.deb ... Unpacking profnet-snapfun (1.0.22-4) over (1.0.22-2) ... Preparing to unpack .../profphd-net_1.0.22-4_amd64.deb ... Unpacking profphd-net (1.0.22-4) over (1.0.22-2) ... Preparing to unpack .../pvm_3.4.6-1+b2_amd64.deb ... Unpacking pvm (3.4.6-1+b2) over (3.4.5-12.6) ... Preparing to unpack .../pynast_1.2.2-2_all.deb ... Unpacking pynast (1.2.2-2) over (1.2.2-1) ... Preparing to unpack .../python-cogent_1.9-9_amd64.deb ... Unpacking python-cogent (1.9-9) over (1.5.3-2) ... Preparing to unpack .../reprof_1.0.1-4_all.deb ... Unpacking reprof (1.0.1-4) over (1.0.1-1) ... Preparing to unpack .../snap_2013-11-29-6_amd64.deb ... Unpacking snap (2013-11-29-6) over (2013-11-29-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for menu (2.1.47) ... Processing triggers for python-support (1.0.15) ... Setting up libtinfo-dev:amd64 (6.0+20161126-1+deb9u2) ... Setting up libc-dev-bin (2.24-11+deb9u4) ... Setting up linux-libc-dev:amd64 (4.9.228-1) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up libncursesw5-dev:amd64 (6.0+20161126-1+deb9u2) ... Setting up libncurses5-dev:amd64 (6.0+20161126-1+deb9u2) ... Setting up binutils (2.28-5) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up bsdmainutils (9.0.12+nmu1) ... Setting up liblzma-dev:amd64 (5.2.2-1.2+b1) ... Setting up libbz2-dev:amd64 (1.0.6-8.1) ... Setting up bzip2 (1.0.6-8.1) ... Setting up xz-utils (5.2.2-1.2+b1) ... Setting up libdpkg-perl (1.18.25) ... Setting up patch (2.7.5-1+deb9u2) ... Setting up make (4.1-9.1) ... Setting up dpkg-dev (1.18.25) ... Setting up libtext-wrapi18n-perl (0.06-7.1) ... Setting up debconf-i18n (1.5.61) ... Setting up mawk (1.3.3-17+b3) ... Setting up groff-base (1.22.3-9) ... Installing new version of config file /etc/groff/man.local ... Installing new version of config file /etc/groff/mdoc.local ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up man-db (2.7.6.1-2) ... Installing new version of config file /etc/cron.daily/man-db ... Installing new version of config file /etc/cron.weekly/man-db ... Installing new version of config file /etc/manpath.config ... Updating database of manual pages ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up libexpat1-dev:amd64 (2.2.0-2+deb9u3) ... Setting up fonts-texgyre (20160520-1) ... Setting up ucf (3.0036) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up fonts-liberation (1:1.07.4-2) ... Setting up fontconfig-config (2.11.0-6.7) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libx11-doc (2:1.6.4-3+deb9u1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up xkb-data (2.19-1+deb9u1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up x11proto-core-dev (7.0.31-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libxcb1-dev:amd64 (1.12-1) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up x11proto-input-dev (2.3.2-1) ... Setting up x11proto-kb-dev (1.0.7-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libx11-dev:amd64 (2:1.6.4-3+deb9u1) ... Setting up x11-common (1:7.7+19) ... Installing new version of config file /etc/init.d/x11-common ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of restart. Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libice-dev:amd64 (2:1.0.9-2) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libsm-dev:amd64 (2:1.2.2-1+b3) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxt-dev:amd64 (1:1.1.5-1) ... Setting up libaudio2:amd64 (1.9.4-5+b1) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Setting up libdconf1:amd64 (0.26.0-2+b1) ... Setting up dconf-service (0.26.0-2+b1) ... Setting up dconf-gsettings-backend:amd64 (0.26.0-2+b1) ... Setting up liblqr-1-0:amd64 (0.4.2-2+b2) ... Setting up poppler-data (0.4.7-8) ... Setting up sgml-base (1.29) ... Setting up dmidecode (3.0-4) ... Setting up libpopt0:amd64 (1.16-10+b2) ... Setting up update-inetd (4.44) ... Setting up netbase (5.4) ... Installing new version of config file /etc/services ... Setting up gettext-base (0.19.8.1-2+deb9u1) ... Setting up krb5-locales (1.15-1+deb9u1) ... Setting up libedit2:amd64 (3.1-20160903-3) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libwrap0:amd64 (7.6.q-26) ... Setting up manpages (4.10-2) ... Setting up mime-support (3.60) ... Installing new version of config file /etc/mime.types ... Setting up abacas (1.3.1-3) ... Setting up libbytecode-java (0.92.svn.20090106-2) ... Setting up libcommons-cli-java (1.3.1-3) ... Setting up libcommons-collections3-java (3.2.2-1) ... Setting up libcommons-pool-java (1.6-3) ... Setting up alien-hunter (1.7-5) ... Setting up ant (1.9.9-1+deb9u1) ... Setting up ant-optional (1.9.9-1+deb9u1) ... Setting up libmaloc1 (0.2-3.1) ... Setting up apbs (1.4-1+b1) ... Setting up aragorn (1.2.38-1) ... Setting up libblas-common (3.7.0-2) ... Setting up libblas3 (3.7.0-2) ... Setting up libblas-dev (3.7.0-2) ... Setting up libatlas3-base (3.10.3-1+b1) ... update-alternatives: warning: forcing reinstallation of alternative /usr/lib/atlas-base/atlas/libblas.so.3 because link group libblas.so.3 is broken update-alternatives: warning: forcing reinstallation of alternative /usr/lib/atlas-base/atlas/liblapack.so.3 because link group liblapack.so.3 is broken Setting up liblapack3 (3.7.0-2) ... Setting up liblapack-dev (3.7.0-2) ... Setting up python-numpy (1:1.12.1-3) ... Setting up arden (1.0-3) ... Setting up dictionaries-common (1.27.2) ... Setting up aspell-en (2016.11.20-0-0.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libgettextpo0:amd64 (0.19.8.1-2+deb9u1) ... Setting up libgettextpo-dev:amd64 (0.19.8.1-2+deb9u1) ... Setting up libcroco3:amd64 (0.6.11-3) ... Setting up gettext (0.19.8.1-2+deb9u1) ... Setting up autopoint (0.19.8.1-2+deb9u1) ... Setting up autotools-dev (20161112.1) ... Setting up binfmt-support (2.1.6-2) ... update-binfmts: warning: ksh already enabled in kernel. update-binfmts: warning: jar already enabled in kernel. update-binfmts: warning: python2.7 already enabled in kernel. invoke-rc.d: policy-rc.d denied execution of start. Setting up libdata-stag-perl (0.14-2) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up bioperl (1.7.1-2) ... Setting up biosquid (1.9g+cvs20050121-7) ... Setting up blends-common (0.6.96) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-3) ... Setting up blt (2.5.3+dfsg-3) ... Setting up boxshade (3.3.1-10) ... Setting up bwa (0.7.15-2+deb9u1) ... Setting up bzip2-doc (1.0.6-8.1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 30 added, 78 removed; done. Setting up libnspr4:amd64 (2:4.12-6) ... Setting up libnss3:amd64 (2:3.26.2-1.1+deb9u1) ... Setting up ca-certificates-java (20170929~deb9u3) ... Installing new version of config file /etc/ca-certificates/update.d/jks-keystore ... Setting up cdbs (0.4.150) ... Setting up microbiomeutil-data (20101212+dfsg1-1) ... Setting up chimeraslayer (20101212+dfsg1-1) ... Setting up circos-tools (0.22-1) ... Setting up clearcut (1.0.9-1+b1) ... Setting up colord-data (1.3.3-2) ... Setting up cython (0.25.2-1) ... Setting up dh-python (2.20170125) ... Setting up dialign (2.2.1-8) ... Setting up dialign-tx-data (1.0.2-9) ... Setting up dialign-tx (1.0.2-9) ... Setting up python-roman (2.0.0-2) ... Setting up xml-core (0.17) ... Setting up docutils-doc (0.13.1+dfsg-2) ... Setting up embassy-domainatrix (0.1.660-1) ... Setting up embassy-domalign (0.1.660-1) ... Setting up embassy-domsearch (1:0.1.660-1) ... Setting up exonerate (2.4.0-2) ... Setting up libfakeroot:amd64 (1.21-3.1) ... Setting up fakeroot (1.21-3.1) ... Setting up python3-pkg-resources (33.1.1-1) ... Setting up fastaq (3.14.0-1) ... Setting up fastdnaml (1.2.2-11+b1) ... Setting up fastjar (2:0.98-6+b1) ... Setting up fastlink (4.1P-fix100+dfsg-1+b1) ... Setting up fitgcp (0.0.20150429-1) ... Setting up fonts-circos-symbols (0.69.4+dfsg-1) ... Setting up fonts-dejavu-extra (2.37-1) ... Setting up fonts-dejavu (2.37-1) ... Setting up fonts-ebgaramond (0.016-1) ... Setting up fonts-ebgaramond-extra (0.016-1) ... Setting up fonts-font-awesome (4.7.0~dfsg-1) ... Setting up fonts-freefont-otf (20120503-6) ... Setting up fonts-freefont-ttf (20120503-6) ... Setting up fonts-lyx (2.2.2-1) ... Setting up fonts-sil-gentium (20081126:1.03-1) ... Setting up libdrm2:amd64 (2.4.74-1) ... Setting up libglapi-mesa:amd64 (13.0.6-1+b2) ... Setting up libx11-xcb1:amd64 (2:1.6.4-3+deb9u1) ... Setting up libxcb-dri2-0:amd64 (1.12-1) ... Setting up libxcb-dri3-0:amd64 (1.12-1) ... Setting up libxcb-glx0:amd64 (1.12-1) ... Setting up libxcb-present0:amd64 (1.12-1) ... Setting up libxcb-sync1:amd64 (1.12-1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b3) ... Setting up libxshmfence1:amd64 (1.2-1+b2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libgl1-mesa-glx:amd64 (13.0.6-1+b2) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up freeglut3:amd64 (2.8.1-3) ... Setting up ttf-dejavu-core (2.37-1) ... Setting up ttf-dejavu-extra (2.37-1) ... Setting up ttf-dejavu (2.37-1) ... Setting up libglu1-mesa:amd64 (9.0.0-2.1) ... Setting up libatk1.0-data (2.22.0-1) ... Setting up libatk1.0-0:amd64 (2.22.0-1) ... Setting up libthai-data (0.1.26-1) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libpangox-1.0-0:amd64 (0.0.2-5+b2) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up libpangoxft-1.0-0:amd64 (1.40.5-1) ... Setting up libpango1.0-0:amd64 (1.40.5-1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgtkglext1 (1.2.0-4) ... Setting up gamgi (0.17.1-1+b1) ... Setting up garlic (1.6-1.1+b2) ... Setting up python-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Setting up python-reportlab (3.3.0-2+deb9u1) ... Setting up python-biopython (1.68+dfsg-3) ... Setting up gasic (0.0.r19-1) ... Setting up gdpc (2.2.5-6) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libtre5:amd64 (0.8.0-6) ... Setting up lua-filesystem:amd64 (1.6.3-1) ... Setting up lua-lpeg:amd64 (1.0.0-1) ... Setting up libpth20:amd64 (2.0.7-20+b2) ... Setting up genometools-common (1.5.9+ds-4) ... Setting up genometools (1.5.9+ds-4) ... Setting up gff2aplot (2.0-8+b1) ... Setting up gff2ps (0.98d-5) ... Setting up giira (0.0.20140625-1) ... Setting up libfftw3-double3:amd64 (3.3.5-3) ... Setting up glam2 (1064-3+b1) ... Setting up gnuplot (5.0.5+dfsg1-6+deb9u1) ... Setting up gnustep-common (2.6.8-2.1) ... Setting up gnustep-base-common (1.24.9-3.1+deb9u1) ... Setting up gnustep-base-runtime (1.24.9-3.1+deb9u1) ... Installing new version of config file /etc/init.d/gdomap ... invoke-rc.d: policy-rc.d denied execution of start. Setting up gnustep-gui-common (0.25.0-4) ... Setting up libgetopt-euclid-perl (0.4.5-2) ... Setting up grinder (0.5.4-1) ... Setting up gsettings-desktop-schemas (3.22.0-1) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... Setting up hicolor-icon-theme (0.15-1) ... Setting up libpvm3:amd64 (3.4.6-1+b2) ... Setting up hmmer2 (2.3.2-13) ... Setting up infernal (1.1.2-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up iso-codes (3.75-1) ... Setting up jarwrapper (0.59) ... Setting up java-common (0.58+deb9u1) ... Setting up javahelp2 (2.0.05.ds1-9) ... Setting up jmol-applet (14.6.4+2016.11.05+dfsg1-3) ... Setting up libhamcrest-java (1.3-6) ... Setting up junit4 (4.12-4) ... Setting up kalign (1:2.03+20110620-3) ... Setting up libbcprov-java (1.56-1+deb9u2) ... Setting up libbcpkix-java (1.56-1+deb9u2) ... Setting up libmail-java (1.5.6-2) ... Setting up libbcmail-java (1.56-1+deb9u2) ... Setting up libitext-java (2.1.7-11) ... Setting up king (2.23.161103+dfsg1-1) ... Setting up ksh (93u+20120801-3.1) ... update-alternatives: warning: forcing reinstallation of alternative /bin/ksh93 because link group ksh is broken Setting up laptop-detect (0.13.8) ... Setting up libalgorithm-c3-perl (0.10-1) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up libalgorithm-merge-perl (0.08-3) ... Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up libanyevent-cachedns-perl (0.08-2) ... Setting up libanyevent-http-perl (2.23-1) ... Setting up libao-common (1.2.2-1) ... Setting up libao4 (1.2.2-1) ... Setting up libapache2-reload-perl (0.13-1) ... Setting up libapr1:amd64 (1.5.2-5) ... Setting up libargtable2-0 (13-1) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libmodule-runtime-perl (0.014-2) ... Setting up libimport-into-perl (1.002005-1) ... Setting up librole-tiny-perl (2.000005-1) ... Setting up libstrictures-perl (2.000003-1) ... Setting up libmoo-perl (2.002005-1) ... Setting up libexporter-tiny-perl (0.042-1) ... Setting up libtype-tiny-perl (1.000005-1) ... Setting up libarray-compare-perl (3.0.0-1) ... Setting up libasound2-data (1.1.3-5) ... Setting up libasound2:amd64 (1.1.3-5) ... Setting up libasyncns0:amd64 (0.8-6) ... Setting up libfontenc1:amd64 (1:1.1.3-1+b2) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libxcb-shape0:amd64 (1.12-1) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b3) ... Setting up libxmuu1:amd64 (2:1.1.2-2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Setting up x11-utils (7.7+3+b1) ... Setting up libatk-wrapper-java (0.33.3-13+deb9u1) ... Setting up libatm1:amd64 (1:2.5.1-2) ... Setting up libavahi-common-data:amd64 (0.6.32-2) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up libcommons-codec-java (1.10-1) ... Setting up libcommons-httpclient-java (3.1-12) ... Setting up libwsdl4j-java (1.6.3-4) ... Setting up libaxis-java (1.4-25) ... Setting up libball1.4-data (1.4.3~beta1-3) ... Setting up libbio-asn1-entrezgene-perl (1.720-1) ... Setting up libbio-graphics-perl (2.40-1) ... Setting up libcaca0:amd64 (0.99.beta19-2.1~deb9u1) ... Setting up liberror-perl (0.17024-1) ... Setting up libcache-cache-perl (1.08-2) ... Setting up libcairo-gobject2:amd64 (1.14.8-1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libtdb1:amd64 (1.3.11-2) ... Setting up libvorbis0a:amd64 (1.3.5-4+deb9u2) ... Setting up libvorbisenc2:amd64 (1.3.5-4+deb9u2) ... Setting up libvorbisfile3:amd64 (1.3.5-4+deb9u2) ... Setting up libcanberra0:amd64 (0.30-3) ... Setting up libcanberra-gtk3-0:amd64 (0.30-3) ... Setting up libcanberra-gtk3-module:amd64 (0.30-3) ... Setting up libcarp-clan-perl (6.06-1) ... Setting up libcastor-core-java (1.3.2-4) ... Setting up libcastor-xml-java (1.3.2-4) ... Setting up libcdt5 (2.38.0-17) ... Setting up libcgi-pm-perl (4.35-1) ... Setting up libcgi-fast-perl (1:2.12-1) ... Setting up libcgi-session-perl (4.48-3) ... Setting up libcgraph6 (2.38.0-17) ... Setting up libclass-c3-perl (0.32-1) ... Setting up libclass-inspector-perl (1.31-1) ... Setting up liblcms2-2:amd64 (2.8-4+deb9u1) ... Setting up libcolord2:amd64 (1.3.3-2) ... Setting up libusb-1.0-0:amd64 (2:1.0.21-1) ... Setting up libgusb2:amd64 (0.2.9-1+b1) ... Setting up libcolorhug2:amd64 (1.3.3-2) ... Setting up libcommons-parent-java (39-3) ... Setting up libcommons-compress-java (1.13-1) ... Setting up libcommons-io-java (2.5-1) ... Setting up libcommons-jexl2-java (2.1.1-3) ... Setting up libcommons-lang-java (2.6-6) ... Setting up libcommons-math3-java (3.6.1-2) ... Setting up libconfig-general-perl (2.63-1) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libcr0 (0.8.5-2.3+b1) ... Setting up libdata-dumper-simple-perl (0.11-5) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libdate-manip-perl (6.57-1) ... Setting up libdevel-symdump-perl (2.17-1) ... Setting up libdirectfb-1.2-9:amd64 (1.2.10.0-8+deb9u1) ... Setting up libdjvulibre-text (3.5.27.1-7) ... Setting up libjaxen-java (1.1.6-1+deb9u1) ... Setting up libisorelax-java (20041111-9) ... Setting up libmsv-java (2009.1+dfsg1-5) ... Setting up libdom4j-java (1.6.1+dfsg.3-2+deb9u1) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up libdrm-intel1:amd64 (2.4.74-1) ... Setting up libdrm-nouveau2:amd64 (2.4.74-1) ... Setting up libdrm-radeon1:amd64 (2.4.74-1) ... Setting up libelf1:amd64 (0.168-1) ... Setting up libelk0 (3.99.8-4.1+b1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libexif12:amd64 (0.6.21-2+deb9u4) ... Setting up libfann2:amd64 (2.2.0+ds-3) ... Setting up libfftw3-single3:amd64 (3.3.5-3) ... Setting up liburi-perl (1.71-1) ... Setting up libfile-desktopentry-perl (0.22-1) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up libfile-mimeinfo-perl (0.27-1) ... Setting up libfile-which-perl (1.21-1) ... Setting up libflac8:amd64 (1.3.2-1) ... Setting up libfont-afm-perl (1.20-2) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnb-org-openide-util-lookup-java (8.1+dfsg1-5) ... Setting up libnb-org-openide-util-java (8.1+dfsg1-5) ... Setting up libfreehep-util-java (2.0.2-6) ... Setting up libfreehep-swing-java (2.0.3-4) ... Setting up libfreehep-export-java (2.1.1-3) ... Setting up libfreehep-graphics2d-java (2.1.1-5) ... Setting up libfreehep-io-java (2.0.2-5) ... Setting up libfreehep-graphicsio-java (2.1.1-4) ... Setting up libtablelayout-java (20090826-3) ... Setting up libjas-plotter-java (2.2.6+dfsg1-3) ... Setting up libfreehep-graphicsio-tests-java (2.1.1+dfsg1-4) ... Setting up libfreehep-graphicsio-emf-java (2.1.1-emfplus+dfsg1-3) ... Setting up libfreehep-graphicsio-pdf-java (2.1.1+dfsg-2) ... Setting up libfreehep-graphicsio-ps-java (2.1.1-2) ... Setting up libfreehep-xml-java (2.1.2+dfsg1-4) ... Setting up libfreehep-graphicsio-svg-java (2.1.1-4) ... Setting up libfreehep-graphicsio-swf-java (2.1.1+dfsg-2) ... Setting up libg20 (0.72-6) ... Setting up libgetopt-simple-perl (1.52-5) ... Setting up libglib2.0-data (2.50.3-2+deb9u2) ... Setting up libgnumail-java (1.1.2-10) ... Setting up libipc-run-perl (0.94-1+deb9u1) ... Setting up libparse-recdescent-perl (1.967013+dfsg-1) ... Setting up libxml-twig-perl (1:3.50-1) ... Setting up libxml-xpath-perl (1.40-1) ... Setting up libgraphviz-perl (2.22-1) ... Setting up libyaml-perl (1.21-1) ... Setting up libgo-perl (0.15-5) ... Setting up libgphoto2-l10n (2.5.12-1) ... Setting up libgraph-perl (1:0.96-2) ... Setting up libgraphics-colornames-perl (2.11-7.1) ... Setting up libgraphics-colorobject-perl (0.5.0-7.1) ... Setting up libgtk-3-common (3.22.11-1) ... Setting up libgtk2.0-common (2.24.31-2) ... Setting up libgudev-1.0-0:amd64 (230-3) ... Setting up libgvpr2 (2.38.0-17) ... Setting up libheap-perl (0.80-3) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libhtml-format-perl (2.12-1) ... Setting up libhtml-tableextract-perl (2.13-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libhttpcore-java (4.4.6-1) ... Setting up libhttpclient-java (4.5.2-2) ... Setting up libhttpmime-java (4.5.2-2) ... Setting up libieee1284-3:amd64 (0.2.11-13) ... Setting up libijs-0.35:amd64 (0.35-12) ... Setting up libio-all-perl (0.86-2) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libio-stringy-perl (2.111-2) ... Setting up libitext5-java (5.5.6-2) ... Setting up libjam-java (0.1.20140824-2) ... Setting up libjbig2dec0:amd64 (0.13-4.1) ... Setting up libjcommon-java (1.0.23-1) ... Setting up libjebl2-java (0.1+20140614-1) ... Setting up libjets3t-java (0.8.1+dfsg-3) ... Setting up libjgoodies-common-java (1.8.1-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Setting up libjpeg-dev (1:1.5.1-2) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-4) ... Setting up libjs-underscore (1.8.3~dfsg-1) ... Setting up libjsch-java (0.1.54-1) ... Setting up libjson-glib-1.0-common (1.2.6-1) ... Setting up libjson-glib-1.0-0:amd64 (1.2.6-1) ... Setting up libjson-perl (2.90-1) ... Setting up libjswingreader-java (0.3-2) ... Setting up liblog4j1.2-java (1.2.17-7+deb9u1) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up libsys-hostname-long-perl (1.5-1) ... Setting up libmail-sendmail-perl (0.79.16-2) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libmath-bezier-perl (0.01-2) ... Setting up libmath-derivative-perl (0.04-2) ... Setting up libmath-round-perl (0.07-1) ... Setting up libmath-vec-perl (1.01-3) ... Setting up libmiglayout-java (4.2-3) ... Setting up libmime-tools-perl (5.508-1) ... Setting up libmldbm-perl (2.05-2) ... Setting up libmng1:amd64 (1.0.10+dfsg-3.1+b5) ... Setting up libmodule-build-perl (0.422000-1) ... Setting up libmodule-pluggable-perl (5.2-1) ... Setting up libmodule-signature-perl (0.81-1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libmpfr4:amd64 (3.1.5-1) ... Setting up libmysql-java (5.1.49-0+deb9u1) ... Setting up libnet-http-perl (6.12-1) ... Setting up libnotify4:amd64 (0.7.7-2) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up libole-storage-lite-perl (0.19-1+deb9u1) ... Setting up liborc-0.4-0:amd64 (1:0.4.26-2) ... Setting up liboro-java (2.0.8a-12) ... Setting up libpackage-constants-perl (0.06-1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up libpathplan4 (2.38.0-17) ... Setting up libpcsclite1:amd64 (1.8.20-1) ... Setting up libperl4-corelibs-perl (0.003-2+deb9u1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libpod-latex-perl (0.61-2) ... Setting up libpolkit-gobject-1-0:amd64 (0.105-18+deb9u1) ... Setting up libpolkit-backend-1-0:amd64 (0.105-18+deb9u1) ... Setting up libpolkit-agent-1-0:amd64 (0.105-18+deb9u1) ... Setting up policykit-1 (0.105-18+deb9u1) ... Installing new version of config file /etc/pam.d/polkit-1 ... Setting up libpotrace0 (1.13-3) ... Setting up libreadonly-perl (2.050-1) ... Setting up libregexp-common-perl (2016060801-1) ... Setting up libsoup2.4-1:amd64 (2.56.0-2+deb9u2) ... Setting up libsoup-gnome2.4-1:amd64 (2.56.0-2+deb9u2) ... Setting up librest-0.7-0:amd64 (0.8.0-2) ... Setting up librsvg2-2:amd64 (2.40.16-1+b1) ... Setting up librsvg2-common:amd64 (2.40.16-1+b1) ... Setting up libsane-extras-common (1.0.22.4) ... Setting up libsane-extras:amd64 (1.0.22.4) ... Setting up libsctp1:amd64 (1.0.17+dfsg-1+b1) ... Setting up libsdl1.2debian:amd64 (1.2.15+dfsg1-4) ... Setting up libsigsegv2:amd64 (2.10-5) ... Setting up libsndfile1:amd64 (1.0.27-3) ... Setting up libsnp-sites1 (2.3.2-1) ... Setting up libwww-perl (6.15-1) ... Setting up libsoap-lite-perl (1.20-1) ... Setting up libsoftware-license-perl (0.103012-1) ... Setting up libsprng2 (2.0a-10) ... Setting up libsqlite0 (2.8.17-14) ... Setting up libsquizz (0.99c+dfsg-1) ... Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Setting up libstatistics-descriptive-perl (3.0612-1) ... Setting up libsvg-perl (2.64-1) ... Setting up libsvm3 (3.21+ds-1.1) ... Setting up libsynctex1:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Setting up libtcl8.5:amd64 (8.5.19-2+b1) ... Setting up libterm-ui-perl (0.46-1) ... Setting up libtest-pod-perl (1.51-1) ... Setting up libtext-format-perl (0.60-1) ... Setting up libtheora0:amd64 (1.1.1+dfsg.1-14+b1) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libtk8.5:amd64 (8.5.19-1+b1) ... Setting up libtree-dagnode-perl (1.29-1) ... Setting up libtry-tiny-perl (0.28-1) ... Setting up libunwind8 (1.1-4.1) ... Setting up libutempter0:amd64 (1.1.6-3) ... Setting up libv4lconvert0:amd64 (1.12.3-1) ... Setting up libv4l-0:amd64 (1.12.3-1) ... Setting up libvisual-0.4-0:amd64 (0.4.0-10) ... Setting up libxml-simple-perl (2.22-1) ... Setting up libvm-ec2-perl (1.28-2) ... Setting up libvte9 (1:0.28.2-5+b2) ... Setting up libwayland-client0:amd64 (1.12.0-1+deb9u1) ... Setting up libwayland-cursor0:amd64 (1.12.0-1+deb9u1) ... Setting up libx11-protocol-perl (0.56-7) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Setting up libxdot4 (2.38.0-17) ... Setting up libxkbcommon0:amd64 (0.7.1-2~deb9u1) ... Setting up libxml-dom-perl (1.44-2) ... Setting up libxml-dom-xpath-perl (0.14-2) ... Setting up libxml-sax-writer-perl (0.56-1) ... Setting up libxslt1.1:amd64 (1.1.29-2.1+deb9u2) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up libyaml-tiny-perl (1.70-1) ... Setting up libzzip-0-13:amd64 (0.13.62-3.2~deb9u1) ... Setting up lksctp-tools (1.0.17+dfsg-1+b1) ... Setting up loki (2.4.7.4-6+b1) ... Setting up libgenometools0 (1.5.9+ds-4) ... Setting up ltrsift (1.0.2-7) ... Setting up macs (2.1.1.20160309-1) ... Setting up mafft (7.307-1) ... Setting up manpages-dev (4.10-2) ... Setting up melting (4.3.1+dfsg-2+b1) ... Setting up metastudent-data (2.0.1-2) ... Setting up metastudent (2.0.1-4) ... Setting up metastudent-data-2 (1.0.0-2) ... Setting up nast-ier (20101212+dfsg1-1+b1) ... Setting up wigeon (20101212+dfsg1-1) ... Setting up microbiomeutil (20101212+dfsg1-1) ... Setting up mipe (1.1-5) ... Setting up mknfonts.tool (0.5-11+b5) ... Setting up mlv-smile (1.47-4+b1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up mysql-common (5.8+1.0.2) ... Removing obsolete conffile /etc/mysql/conf.d/.keepme ... Removing obsolete conffile /etc/mysql/my.cnf ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up ncoils (2002-4+b1) ... Setting up njplot (2.4-7) ... Setting up perlprimer (1.2.3-1) ... Setting up phylip (1:3.696+dfsg-5) ... Setting up python-tk (2.7.13-1) ... Setting up plasmidomics (0.2.0-5) ... Setting up po-debconf (1.0.20) ... Setting up poa (2.0+20060928-4+b1) ... Setting up prerex (6.5.3-1+b2) ... Setting up proalign (0.603-2) ... Setting up proda (1.0-10) ... Setting up prodigal (1:2.6.3-1+b1) ... Setting up ps2eps (1.68+binaryfree-2) ... Setting up python-biopython-doc (1.68+dfsg-3) ... Setting up python-cairo (1.8.8-2.2) ... Setting up python-pkg-resources (33.1.1-1) ... Setting up python-chardet (2.3.0-2) ... Setting up python-crypto (2.6.1-7) ... Setting up python-six (1.10.0-3) ... Setting up python-dateutil (2.5.3-2) ... Setting up python-decorator (4.0.11-1) ... Setting up python-egenix-mxtools (3.2.9-1) ... Setting up python-egenix-mxdatetime (3.2.9-1) ... Setting up python-gobject-2 (2.28.6-13) ... Setting up python-gtk2 (2.24.0-5.1) ... Setting up python-glade2 (2.24.0-5.1) ... Setting up python-gmpy (1.17-3) ... Setting up python-imaging (4.0.0-4+deb9u1) ... Setting up python-markupsafe (0.23-3) ... Setting up python-jinja2 (2.8-1) ... Setting up python-mako (1.0.6+ds1-2) ... Setting up python-mpmath (0.19-3) ... Setting up python-multipletau (0.1.7+ds-1) ... Setting up python-nose (1.3.7-2) ... Setting up python-pyglet (1.1.4.dfsg-3) ... Setting up python-pygments (2.2.0+dfsg-1) ... Removing obsolete conffile /etc/bash_completion.d/pygmentize ... Setting up python-pyparsing (2.1.10+dfsg1-1) ... Setting up python-pyrex (0.9.9-1) ... Setting up python-pysqlite2 (2.7.0-1) ... Setting up python-qcli (0.1.1-1) ... Setting up python-renderpm:amd64 (3.3.0-2+deb9u1) ... Setting up python-sqlalchemy (1.0.15+ds1-1) ... Setting up python-sqlalchemy-ext (1.0.15+ds1-1) ... Setting up python-tz (2016.7-0.3) ... Setting up python-wxversion (3.0.2.0+dfsg-4) ... Setting up python-yaml (3.12-1) ... Setting up python3-nose (1.3.7-2) ... Setting up qtcore4-l10n (4:4.8.7+dfsg-11) ... Setting up r-cran-fastcluster (1.1.22-1) ... Setting up r-cran-permute (0.9-4-1) ... Setting up r-doc-html (3.3.3-1) ... Setting up raster3d (3.0-3-2+b1) ... Setting up raxml (8.2.9+dfsg-1+b1) ... Setting up readseq (1-11+b1) ... Setting up rename (0.20-4) ... Setting up rnahybrid (2.1.2-1+b1) ... Setting up rsync (3.1.2-1+deb9u2) ... Installing new version of config file /etc/default/rsync ... invoke-rc.d: policy-rc.d denied execution of restart. Setting up rtax (0.984-5) ... Setting up rubygems-integration (1.11) ... Setting up seqtk (1.2-1) ... Setting up sibsim4 (0.20-2+b1) ... Setting up sigma-align (1.1.3-4+b1) ... Setting up sim4 (0.0.20121010-4) ... Setting up smalt (0.7.6-6) ... Setting up snp-sites (2.3.2-1) ... Setting up soapdenovo (1.05-3) ... Setting up sphinx-doc (1.4.9-2) ... Setting up squizz (0.99c+dfsg-1) ... Setting up ssake (3.8.4-1) ... Setting up ssl-cert (1.0.39) ... Setting up tcl8.6 (8.6.6+dfsg-1+b1) ... Setting up tcl (8.6.0+9) ... Setting up tcllib (1.18-dfsg-3) ... Setting up tcpd (7.6.q-26) ... Setting up tk8.6 (8.6.6-1+b1) ... Setting up tk (8.6.0+9) ... Setting up tk-table:amd64 (2.10-3) ... Setting up tklib (0.6-3) ... Setting up tm-align (20160521+dfsg-2) ... Setting up tree-puzzle (5.2-8+b3) ... Setting up tree-puzzle-doc (5.2-8) ... Setting up trimmomatic (0.36+dfsg-1) ... Setting up unzip (6.0-21+deb9u2) ... Setting up velvet (1.2.10+dfsg1-3+b1) ... Setting up velvetoptimiser (2.2.5-5) ... Setting up wise-data (2.4.1-19) ... Setting up wise (2.4.1-19) ... Setting up x11-xserver-utils (7.7+7+b1) ... Setting up xauth (1:1.0.9-1+b2) ... Setting up xdg-user-dirs (0.15-2+b1) ... Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up xsltproc (1.1.29-2.1+deb9u2) ... Setting up xterm (327-2) ... Installing new version of config file /etc/X11/app-defaults/XTerm ... Setting up zip (3.0-11+b1) ... Setting up acedb-other (4.9.39+dfsg.02-1) ... Setting up ant-contrib (1.0~b3+svn177-9) ... Setting up concavity (0.1+dfsg.1-1) ... Setting up conservation-code (20110309.0-5) ... Setting up disulfinder-data (1.2.11-6) ... Setting up fasttree (2.1.9-1) ... Setting up fonts-stix (1.1.1-4) ... Setting up icedtea-netx-common (1.6.2-3.1+deb9u1) ... Setting up libapache-mime4j-java (0.7.2-4) ... Setting up libcbf0:amd64 (0.9.2.2-1+b1) ... Setting up libcvector2:amd64 (1.0.3.1-1.1+b2) ... Setting up libcneartree5:amd64 (3.1.1-2.1+b2) ... Setting up libconfig-inifiles-perl (2.94-1) ... Setting up libcqrlib2:amd64 (1.1.2-2.1+b2) ... Setting up libflite1:amd64 (2.0.0-release-3+b1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up libmpc3:amd64 (1.0.3-1+b2) ... Setting up librg-exception-perl (1.0.3-2) ... Setting up librg-reprof-bundle-perl (1.0.1-4) ... Setting up profphd-utils (1.0.10-3+b1) ... Setting up librg-utils-perl (1.0.43-4) ... Setting up libset-scalar-perl (1.29-2) ... Setting up mpi-default-bin (1.8) ... Setting up ncbi-seg (0.0.20000620-3+b1) ... Setting up neobio (0.0.20030929-2) ... Setting up profnet-norsnet (1.0.22-4) ... Setting up norsnet (1.0.17-2) ... Setting up norsp (1.0.6-2) ... Setting up predictnls (1.0.20-3) ... Setting up profnet-bval (1.0.22-4) ... Setting up profbval (1.0.22-4) ... Setting up profnet-isis (1.0.22-4) ... Setting up profisis (1.0.11-3) ... Setting up profnet-chop (1.0.22-4) ... Setting up profnet-con (1.0.22-4) ... Setting up profnet-md (1.0.22-4) ... Setting up profnet-prof (1.0.22-4) ... Setting up profnet-snapfun (1.0.22-4) ... Setting up profphd-net (1.0.22-4) ... Setting up pvm (3.4.6-1+b2) ... update-alternatives: using /usr/bin/rsh to provide /usr/lib/pvm3/bin/rsh (pvm-rsh) in auto mode Setting up pynast (1.2.2-2) ... Setting up python-cogent (1.9-9) ... Setting up reprof (1.0.1-4) ... Setting up snap (2013-11-29-6) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Setting up bauble (0.9.7-2.1) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.13.1+dfsg-2) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.13.1+dfsg-2) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode Setting up tasksel (3.39) ... Setting up tasksel-data (3.39) ... Processing triggers for dbus (1.8.22-0+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for dictionaries-common (1.27.2) ... aspell-autobuildhash: processing: en [en-common]. aspell-autobuildhash: processing: en [en-variant_0]. aspell-autobuildhash: processing: en [en-variant_1]. aspell-autobuildhash: processing: en [en-variant_2]. aspell-autobuildhash: processing: en [en-w_accents-only]. aspell-autobuildhash: processing: en [en-wo_accents-only]. aspell-autobuildhash: processing: en [en_AU-variant_0]. aspell-autobuildhash: processing: en [en_AU-variant_1]. aspell-autobuildhash: processing: en [en_AU-w_accents-only]. aspell-autobuildhash: processing: en [en_AU-wo_accents-only]. aspell-autobuildhash: processing: en [en_CA-variant_0]. aspell-autobuildhash: processing: en [en_CA-variant_1]. aspell-autobuildhash: processing: en [en_CA-w_accents-only]. aspell-autobuildhash: processing: en [en_CA-wo_accents-only]. aspell-autobuildhash: processing: en [en_GB-ise-w_accents-only]. aspell-autobuildhash: processing: en [en_GB-ise-wo_accents-only]. aspell-autobuildhash: processing: en [en_GB-ize-w_accents-only]. aspell-autobuildhash: processing: en [en_GB-ize-wo_accents-only]. aspell-autobuildhash: processing: en [en_GB-variant_0]. aspell-autobuildhash: processing: en [en_GB-variant_1]. aspell-autobuildhash: processing: en [en_US-w_accents-only]. aspell-autobuildhash: processing: en [en_US-wo_accents-only]. Processing triggers for menu (2.1.47) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 9m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-y', 'upgrade'] 9m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-yf', 'dist-upgrade'] 33m6.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: fonts-inconsolata ifupdown imagemagick-common iproute2 isc-dhcp-client isc-dhcp-common libasm-java libatm1 libbamtools2.3.0 libboost-chrono1.55.0 libboost-filesystem1.55.0 libboost-program-options1.55.0 libboost-random1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libboost-timer1.55.0 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcfitsio2 libcofoja-java libcommons-net2-java libcr0 libdirectfb-1.2-9 libdns-export100 libdns-export162 libelfg0 libglew1.10 libgnuinet-java libgnumail-java libgnutls-deb0-28 libgphoto2-port10 libhdf5-8 libheap-perl libhogweed2 libilmbase6 libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjasper1 libjson-c2 libjsoncpp0 libllvm3.5 libmnl0 libmysqlclient18 libnettle4 libopenexr6 libopenjpeg5 libpango1.0-0 libpoppler46 libprotobuf9 libpython-all-dev libsam-java libsaxonb-java libservlet2.5-java libsqlite0 libstaden-read1 libtcl8.5 libtcmalloc-minimal4 libtdb1 libtk8.5 libv4l-0 libv4lconvert0 libvorbisfile3 libvpx1 libwebp5 libwebpdemux1 libwebpmux1 libxtables10 libxtables12 mysql-client python-all python-all-dev python-pyfits python-pyrex python-support r-cran-domc r-cran-proto r-cran-tcltk2 sra-toolkit-libs0 tk-table Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: fonts-droid gnuplot-tex gnustep-back0.24 gnustep-back0.24-cairo jalview libasprintf0c2 libboost-date-time1.55.0 libboost-mpi1.55.0 libcassie1 libcommons-net1-java libfreecontact0 libgflags2 libgnustep-gui0.24 libgoogle-glog0 libgsl0ldbl libgtextutils0 libhmsbeagle1 liblog4cpp5 libmagickcore-6.q16-2 libmagickcore-6.q16-2-extra libmagickwand-6.q16-2 libopenmpi1.6 libopenms1.11 libpcrecpp0 libperl5.20 libproxy1 libpython3.4-minimal libpython3.4-stdlib libreadline6-dev librelion-1.3-1 libtinyxml2.6.2 libwxbase3.0-0 libwxgtk3.0-0 libzeep3.0 mysql-client-5.5 openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless openms perl-modules python3.4 python3.4-minimal r-other-bio3d texlive-math-extra topp tzdata-java The following NEW packages will be installed: abyss adapterremoval adun-core aegean alter-sequence-alignment andi ariba art-nextgen-simulation-tools artemis artfastqgenerator astro-tasks atac augustus augustus-data autoconf automake axe-demultiplexer barrnap bcftools beagle beast-mcmc beast2-mcmc beignet-opencl-icd berkeley-express bio-eagle bio-rainbow blasr brig cgview circlator codonw cpp-6 crac cron cutadapt daligner dascrubber datamash dawg dazzdb dbus-java-bin debichem-tasks default-mysql-client dh-autoreconf dh-strip-nondeterminism dindel dirmngr dwgsim ea-utils ecopcr eigensoft exim4 exim4-base exim4-config exim4-daemon-light f2j falcon fastahack fastml fastqtl fml-asm fonts-croscore fonts-droid-fallback fonts-mathjax fonts-noto-hinted fonts-noto-mono fonts-roboto-hinted fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fop fsa fsm-lite g++-6 garli gcc-6 gcc-6-base gfortran-6 ghemical gnupg-agent gnupg-l10n gnustep-back0.25 gnustep-back0.25-cairo gnustep-dl2-postgresql-adaptor graphlan gtk-update-icon-cache gubbins guile-2.0-libs gwama harvest-tools hdf5-tools hilive hisat2 hyphy-common hyphy-mpi hyphygui icc-profiles-free icu-devtools imagemagick-6-common indelible iqtree isympy isympy-common iva jaligner jemboss jmodeltest khmer khmer-common kineticstools kineticstools-data king-probe kmc kmer kraken lambda-align leaff lefse libaec0 libaio1 libamd2 libann0 libapparmor1 libapt-pkg5.0 libarchive-zip-perl libarmadillo7 libarpack2 libarray-utils-perl libasan3 libasm-java libasprintf0v5 libassuan0 libatinject-jsr330-api-java libavalon-framework-java libb-hooks-endofscope-perl libbamtools2.4.0 libbatik-java libbio-coordinate-perl libblasr libblosc1 libboost-atomic1.62.0 libboost-chrono1.62.0 libboost-date-time1.62.0 libboost-filesystem1.62.0 libboost-iostreams1.62.0 libboost-math1.62.0 libboost-mpi1.62.0 libboost-program-options1.62.0 libboost-random1.62.0 libboost-regex1.62.0 libboost-serialization1.62.0 libboost-system1.62.0 libboost-thread1.62.0 libboost-timer1.62.0 libbpp-core2v5 libbpp-phyl-omics1v5 libbpp-phyl9v5 libbpp-seq-omics1v5 libbpp-seq9v5 libbsf-java libbytes-random-secure-perl libcapnp-0.5.3 libcapture-tiny-perl libcassie1v5 libcc1-0 libcfitsio5 libclass-data-inheritable-perl libclass-load-perl libclass-load-xs-perl libclass-tiny-perl libcolamd2 libcolt-free-java libcommons-collections4-java libcommons-configuration-java libcommons-lang3-java libcommons-math-java libcommons-net-java libconcurrent-java libcpan-changes-perl libcrypt-random-seed-perl libcrypto++6 libdata-perl-perl libdbus-java libdevel-overloadinfo-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdisorder0 libdist-checkconflicts-perl libdivsufsort3 libdns-export162 libdouble-conversion1 libdrm-amdgpu1 libdsdp-5.8gf libecpg6 libegl1-mesa libemail-date-format-perl libenv-path-perl libepoxy0 liberfa1 libeval-closure-perl libevdev2 libexception-class-perl libf2j-java libfabric1 libfastahack0 libfastutil-java libfdisk1 libfile-copy-link-perl libfile-find-rule-perl libfile-grep-perl libfile-slurp-perl libfile-slurper-perl libfile-stripnondeterminism-perl libfindbin-libs-perl libfml0 libfontbox-java libfop-java libfreecontact0v5 libfribidi0 libfuse2 libgail-common libgail18 libgbm1 libgc1c2 libgcc-6-dev libgenome-1.3-0v5 libgetopt-java libgetopt-long-descriptive-perl libgflags2v5 libgfortran-6-dev libghemical-data libghemical5v5 libgif7 libgkarrays1 libglew2.0 libglpk40 libgnustep-dl2-0d libgnustep-gui0.25 libgnutls30 libgoogle-glog0v5 libgphoto2-port12 libgraph-readwrite-perl libgromacs2 libgsasl7 libgsl-dev libgsl2 libgtextutils0v5 libgts-0.7-5 libgts-bin libguava-java libgzstream0 libhat-trie0 libhdf5-100 libhdf5-cpp-100 libhmsbeagle-java libhmsbeagle1v5 libhogweed4 libhts1 libhtsjdk-java libibatis-java libicu-dev libicu57 libidn2-0 libilmbase12 libinput-bin libinput10 libint1 libip4tc0 libipc-shareable-perl libipc-system-simple-perl libisc-export160 libisl15 libitext1-java libj2ssh-java libjargs-java libjaxp1.3-java libjemalloc1 libjlapack-java libjline-java libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-tablesorter libjs-json libjs-mathjax libjs-modernizr libjs-mootools libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker libjsoncpp1 libjsr305-java libjung-free-java libjxr-tools libjxr0 libkdf5-2 libksba8 libkyotocabinet16v5 liblapacke libldap-common liblist-someutils-perl liblist-utilsby-perl libllvm3.9 liblog-dispatch-perl liblog-log4perl-perl liblog4cpp5v5 libltdl-dev liblua5.2-0 liblz4-1 libmagic-mgc libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra libmagickwand-6.q16-3 libmailutils5 libmariadbclient18 libmath-random-isaac-perl libmath-random-isaac-xs-perl libmatthew-debug-java libmbedcrypto0 libmbedtls-dev libmbedtls10 libmbedx509-0 libmems-1.6-1v5 libmime-lite-perl libmime-types-perl libminimap0 libmnl0 libmodule-load-conditional-perl libmodule-runtime-conflicts-perl libmoose-perl libmoox-handlesvia-perl libmopac7-1gf libmpj-java libmpx2 libmtdev1 libmtj-java libmuscle-3.7-1 libnaga-java libnamespace-autoclean-perl libnamespace-clean-perl libnanoxml2-java libncbi-vdb2 libncbi-wvdb2 libncl1 libnetlib-java libnettle6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk1 libnl-3-200 libnl-route-3-200 libnlopt0 libnpth0 libntlm0 libnucleotidelikelihoodcore0 libnumber-compare-perl libnumber-format-perl liboglappth2 libopenbabel4v5 libopenblas-base libopenexr22 libopenjp2-7 libopenmpi2 libopus0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpal-java libparse-yapp-perl libpath-tiny-perl libpbbam libpbdata libpbihdf libpbseq libpcre16-3 libpcre32-3 libpcrecpp0v5 libperformance0.5 libperl5.24 libperlio-utf8-strict-perl libpgtypes3 libpicard-java libpng16-16 libpod-markdown-perl libpoppler64 libpostgresql-jdbc-java libprocessing-core-java libprocps6 libprotobuf10 libproxy1v5 libpsl5 libpsm-infinipath1 libpython3.5-minimal libpython3.5-stdlib libqes0 libqt4-dbus libqt4-declarative libqt4-designer libqt4-help libqt4-script libqt4-scripttools libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 libqt5xml5 libqtassistantclient4 librdmacm1 librdp-taxonomy-tree-java libreadline5 libreadline7 librelion-1.4-1 librhino-java libruby2.3 libsaxon-java libsaxonhe-java libsc-data libsc7v5 libscalar-list-utils-perl libsdsl3 libseccomp2 libsensors4 libservlet3.1-java libsmithwaterman0 libsnappy-java libsnappy-jni libsnappy1v5 libsqlclient1.7 libssl1.0.2 libssl1.1 libssw-java libssw0 libstaden-read11 libstatistics-basic-perl libstdc++-6-dev libsteptalk0 libsub-identify-perl libsub-uplevel-perl libsuitesparseconfig4 libsuperlu5 libswing-layout-java libsz2 libtabixpp0 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-simple-perl libtest-warn-perl libtexlua52 libtexluajit2 libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-glob-perl libtinyxml2.6.2v5 libtmglib3 libtool libtypes-serialiser-perl libunicode-utf8-perl libunixsocket-java libvariable-magic-perl libvcflib-tools libvcflib1 libvecmath-java libwacom-bin libwacom-common libwacom2 libwayland-egl1-mesa libwayland-server0 libwcs5 libwebp6 libwebpdemux2 libwebpmux2 libwxbase3.0-0v5 libwxgtk3.0-0v5 libxalan2-java libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util0 libxcb-xfixes0 libxcb-xinerama0 libxcb-xkb1 libxfont1 libxkbcommon-x11-0 libxmlgraphics-commons-java libxtables12 libxz-java libzeep3.0v5 libzeus-jscl-java libzstd1 lynx-common m4 macsyfinder maffilter mailutils mailutils-common mapdamage mariadb-client-10.1 mariadb-client-core-10.1 mariadb-common mash mauve-aligner mcl meryl mesa-utils metaphlan2 metaphlan2-data mhap microbegps miniasm minimap mira-rfam-12s-rrna mpqc murasaki murasaki-common nanopolish ncbi-blast+-legacy ncbi-entrez-direct ncl-tools openjdk-8-jre openjdk-8-jre-headless parafly parallel parsnp pbalign pbbamtools pbbarcode pbdagcon pbgenomicconsensus pbh5tools pbhoney pbjelly pbsim pbsuite perl-modules-5.24 perl-openssl-defaults phipack phybin physamp piler pinentry-curses pirs pirs-profiles pkg-config placnet plast plink1.9 plip poretools progressivemauve proteinortho prottest psmisc publicsuffix pymol-data python-alabaster python-antlr python-astropy python-avro python-babel python-babel-localedata python-backports-shutil-get-terminal-size python-bs4 python-cffi-backend python-click python-colorama python-configobj python-configparser python-cryptography python-cvxopt python-cycler python-dendropy python-enum34 python-funcsigs python-functools32 python-future python-html5lib python-idna python-imagesize python-intervaltree python-intervaltree-bio python-ipaddress python-ipython python-ipython-genutils python-iso8601 python-jdcal python-joblib python-kineticstools python-lmfit python-matplotlib-venn python-msgpack python-networkx python-numexpr python-openbabel python-opengl python-openpyxl python-openssl python-pandas python-pandas-lib python-pathlib2 python-patsy python-pbalign python-pbbanana python-pbcommand python-pbconsensuscore python-pbcore python-pbgenomicconsensus python-pbh5tools python-pbr python-pbsuite-utils python-pickleshare python-ply python-prompt-toolkit python-ptyprocess python-py python-pyasn1 python-pygraphviz python-pytest python-qt4 python-requests python-rpy2 python-ruffus python-seaborn python-setuptools python-simplejson python-singledispatch python-sklearn python-sklearn-lib python-sortedcontainers python-statsmodels python-statsmodels-lib python-subprocess32 python-sympy-doc python-tables python-tables-data python-tables-lib python-traitlets python-urllib3 python-wcwidth python-webencodings python-xlrd python-xlwt python3-biopython python3-bs4 python3-bz2file python3-chardet python3-cutadapt python3-decorator python3-dendropy python3-html5lib python3-jdcal python3-lxml python3-networkx python3-numpy python3-openpyxl python3-pil python3-py python3-pymummer python3-pysam python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-screed python3-six python3-webencodings python3-xopen python3-yaml python3.5 python3.5-minimal qdbus qt-at-spi qt5-gtk-platformtheme qtchooser qtltools qttranslations5-l10n r-base r-base-html r-bioc-annotate r-bioc-annotationhub r-bioc-biocinstaller r-bioc-biomformat r-bioc-deseq2 r-bioc-dnacopy r-bioc-ebseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-interactivedisplaybase r-bioc-limma r-bioc-mergeomics r-bioc-metagenomeseq r-bioc-multtest r-bioc-phyloseq r-bioc-qvalue r-bioc-s4vectors r-bioc-summarizedexperiment r-cran-acepack r-cran-ade4 r-cran-adegenet r-cran-adegraphics r-cran-adephylo r-cran-assertthat r-cran-backports r-cran-bbmle r-cran-bio3d r-cran-blockmodeling r-cran-bold r-cran-catools r-cran-coda r-cran-combinat r-cran-crayon r-cran-curl r-cran-data.table r-cran-deldir r-cran-distory r-cran-dplyr r-cran-ellipse r-cran-fastmatch r-cran-fields r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-gam r-cran-gdata r-cran-glmnet r-cran-globals r-cran-gmodels r-cran-googlevis r-cran-gplots r-cran-gridbase r-cran-gridextra r-cran-gtools r-cran-highr r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-igraph r-cran-inline r-cran-irlba r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-lazyeval r-cran-learnbayes r-cran-listenv r-cran-littler r-cran-luminescence r-cran-magrittr r-cran-markdown r-cran-memoise r-cran-mime r-cran-minpack.lm r-cran-nmf r-cran-numderiv r-cran-openssl r-cran-phangorn r-cran-phylobase r-cran-pkgmaker r-cran-praise r-cran-prettyunits r-cran-progress r-cran-pscbs r-cran-quadprog r-cran-r.cache r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-randomforest r-cran-raster r-cran-rcppgsl r-cran-readxl r-cran-registry r-cran-rentrez r-cran-reshape r-cran-rgl r-cran-ritis r-cran-rlumshiny r-cran-rncl r-cran-rnexml r-cran-rngtools r-cran-rocr r-cran-rotl r-cran-rredlist r-cran-scatterd3 r-cran-segmented r-cran-seqinr r-cran-shape r-cran-shiny r-cran-shinybs r-cran-snow r-cran-solrium r-cran-sourcetools r-cran-spam r-cran-spdep r-cran-stringi r-cran-taxize r-cran-tibble r-cran-tidyr r-cran-treescape r-cran-uuid r-cran-viridis r-cran-xml2 r-cran-xtable r-cran-yaml r-cran-zoo r-mathlib rake rambo-k rapmap rdp-alignment rdp-classifier rdp-classifier-doc rdp-readseq reapr repeatmasker-recon rhino rna-star roary rsem ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 salmon scrm scythe seer seqprep sga sickle sim4db smithwaterman smrtanalysis snap-aligner sniffles snpomatic sortmerna spaced spades sphinx-rtd-theme-common sprai spread-phy srst2 sspace ssw-align stacks steptalk subread suitename sumaclust sumatra sumtrees surankco swarm sysstat t1utils tantan texlive-generic-extra texlive-science texlive-science-doc time toppred transdecoder transrate-tools treeview trinityrnaseq trinityrnaseq-examples ttf-bitstream-vera ttf-liberation varna vsearch xfonts-100dpi xfonts-encodings xfonts-utils The following packages will be upgraded: acedb-other-belvu acedb-other-dotter adun.app adwaita-icon-theme aevol altree amap-align ampliconnoise anfo apache2 apache2-bin apache2-data apache2-utils apt aspell at-spi2-core autodock autodock-vina autogrid ballview bamtools bc bedtools biomaj bioperl-run blast2 bowtie bowtie2 build-essential cassiopee cd-hit cdbfasta circos clonalframe clustalo clustalw clustalx colord cpp critterding curl dbus debhelper default-jre default-jre-headless discosnp disulfinder dnaclust dssp dvipng edtsurf emboss emboss-data emboss-lib fastqc fastx-toolkit ffindex figtree file filo findutils flexbar fonts-lmodern freecontact g++ gawk gbrowse gcc gentle gfortran ghostscript glib-networking glib-networking-common glib-networking-services glpk-utils gnupg gnuplot-data gnuplot-qt gnustep-back-common gnustep-gui-runtime graphviz gromacs gromacs-data gstreamer1.0-plugins-base hhsuite hhsuite-data hmmer idba ifupdown imagemagick imagemagick-6.q16 imagemagick-common init init-system-helpers initscripts ipig iproute2 ipython isc-dhcp-client isc-dhcp-common jellyfish jmol kissplice last-align libace-perl libai-fann-perl libalgorithm-diff-xs-perl libanfo0 libanyevent-perl libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libarchive13 libaspell15 libasprintf-dev libasync-interrupt-perl libatk-bridge2.0-0 libatk-wrapper-java-jni libatomic1 libatspi2.0-0 libavahi-client3 libb-hooks-op-check-perl libball1.4 libballview1.4 libbareword-filehandles-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libcairo2 libcilkrts5 libclass-c3-xs-perl libclass-xsaccessor-perl libclone-perl libcloog-isl4 libcofoja-java libcommon-sense-perl libconvert-binary-c-perl libcpan-meta-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libdate-calc-perl libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-lexalias-perl libdjvulibre21 libev-perl libfcgi-perl libffindex0 libfile-basedir-perl libfile-fcntllock-perl libfltk-images1.3 libfltk1.3 libfreetype6 libftgl2 libgcc1 libgd-perl libgd3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libgl1-mesa-dri libglpk-java libgmp-dev libgmp10 libgmpxx4ldbl libgnustep-base1.24 libgomp1 libgphoto2-6 libgs9 libgs9-common libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgtk-3-0 libgtk-3-bin libgtk2.0-0 libgtk2.0-bin libguard-perl libgvc6 libharfbuzz-icu0 libhpdf-2.2.1 libhsqldb-java libhtml-parser-perl libibverbs1 libindirect-perl libio-pty-perl libipc-sharelite-perl libitm1 libjellyfish-2.0-2 libjgoodies-forms-java libjmol-java libjs-sphinxdoc libjson-xs-perl libkpathsea6 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-allutils-perl liblist-moreutils-perl liblocale-gettext-perl liblsan0 libmagic1 libmath-random-mt-perl libmath-tamuanova-perl libmotif-common libmultidimensional-perl libncbi6 libnet-dbus-perl libnet-ssleay-perl libnetpbm10 libobjc4 libossp-uuid-perl libossp-uuid16 libpadwalker-perl libpam-systemd libparams-classify-perl libparams-util-perl libparams-validate-perl libpcre3 libpcre3-dev libperlio-gzip-perl libpod-readme-perl libpoppler-qt4-4 libpq5 libptexenc1 libpulse0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libqt4-network libqt4-opengl libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libqtwebkit4 libquadmath0 libreadline-dev librtmp1 libsane libsane-common libsasl2-2 libsasl2-modules libsqlite3-0 libstdc++6 libstring-approx-perl libsub-name-perl libsystemd0 libtamuanova-0.2 libtbb2 libtcmalloc-minimal4 libterm-readkey-perl libtext-charwidth-perl libtext-iconv-perl libtext-soundex-perl libtsan0 libtype-tiny-xs-perl libubsan0 libudev1 libunicode-map-perl libvibrant6b libvisual-0.4-plugins libwmf0.2-7 libxerces-c3.1 libxm4 libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libyaml-libyaml-perl littler lmodern logol-bin lynx lynx-cur mapsembler2 maq maqview massxpert massxpert-data med-bio med-config med-tasks menu minia mira-assembler mothur mrbayes mrs mummer mustang mysql-client ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncbi-tools-x11 netpbm notification-daemon openmpi-bin openmpi-common openssh-client openssl paraclu parsinsert pdb2pqr perl perl-base perl-doc perl-tk perm phyml picard-tools plink populations pp-popularity-contest prank preview-latex-style prime-phylo primer3 probabel probalign probcons procps proftmb prosper pycorrfit pymol pyqi pyscanfcs python python-all python-all-dev python-ball python-ballview python-biom-format python-dev python-h5py python-htseq python-lxml python-matplotlib python-matplotlib-data python-minimal python-mock python-mpi4py python-mysqldb python-pexpect python-pil python-pyfits python-pysam python-scipy python-sip python-sphinx python-sympy python-wxgtk3.0 python2.7 python2.7-dev python2.7-minimal python3 python3-minimal r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-hilbertvis r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-ape r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-boot r-cran-checkmate r-cran-chron r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-digest r-cran-domc r-cran-doparallel r-cran-evaluate r-cran-fail r-cran-foreach r-cran-foreign r-cran-formula r-cran-genabel r-cran-getopt r-cran-ggplot2 r-cran-gtable r-cran-hmisc r-cran-iterators r-cran-kernsmooth r-cran-lattice r-cran-latticeextra r-cran-mapproj r-cran-maps r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-nnet r-cran-optparse r-cran-pkgkitten r-cran-plyr r-cran-proto r-cran-qtl r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sp r-cran-spatial r-cran-stringr r-cran-survival r-cran-tcltk2 r-cran-testthat r-cran-vegan r-cran-xml r-recommended rate4site ray relion-bin ruby saint samtools sane-utils science-biology science-config science-tasks seaview seqan-apps soapdenovo2 sphinx-common sqlite3 sra-toolkit staden staden-common staden-io-lib-utils swi-prolog swi-prolog-nox swi-prolog-x systemd sysv-rc sysvinit-utils t-coffee tabix tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc theseus tigr-glimmer tophat transtermhp treeviewx tzdata uc-echo udev util-linux vcftools vprerex zalign 524 upgraded, 893 newly installed, 46 to remove and 0 not upgraded. Need to get 3059 MB of archives. After this operation, 4164 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ stretch/main libfdisk1 amd64 2.29.2-1+deb9u1 [203 kB] Get:2 http://deb.debian.org/debian/ stretch/main init-system-helpers all 1.48 [44.0 kB] Get:3 http://deb.debian.org/debian/ stretch/main util-linux amd64 2.29.2-1+deb9u1 [981 kB] Get:4 http://deb.debian.org/debian/ stretch/main sysvinit-utils amd64 2.88dsf-59.9 [68.4 kB] Get:5 http://deb.debian.org/debian/ stretch/main initscripts amd64 2.88dsf-59.9 [84.5 kB] Get:6 http://deb.debian.org/debian/ stretch/main sysv-rc all 2.88dsf-59.9 [67.4 kB] Get:7 http://deb.debian.org/debian/ stretch/main libnumber-format-perl all 1.75-1 [30.0 kB] Get:8 http://deb.debian.org/debian/ stretch/main libstatistics-basic-perl all 1.6611-1 [70.4 kB] Get:9 http://deb.debian.org/debian/ stretch/main libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:10 http://deb.debian.org/debian/ stretch/main libwebp6 amd64 0.5.2-1 [235 kB] Get:11 http://deb.debian.org/debian/ stretch/main libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:12 http://deb.debian.org/debian/ stretch/main libgd3 amd64 2.2.4-2+deb9u5 [132 kB] Get:13 http://deb.debian.org/debian/ stretch/main libgd-perl amd64 2.53-3 [177 kB] Get:14 http://deb.debian.org/debian/ stretch/main libparams-validate-perl amd64 1.26-1 [66.0 kB] Get:15 http://deb.debian.org/debian/ stretch/main liblist-someutils-perl all 0.53-1 [42.0 kB] Get:16 http://deb.debian.org/debian/ stretch/main liblist-utilsby-perl all 0.10-1 [14.3 kB] Get:17 http://deb.debian.org/debian/ stretch/main circos all 0.69.4+dfsg-1 [19.8 MB] Get:18 http://deb.debian.org/debian/ stretch/main libcpan-meta-perl all 2.150010-1 [129 kB] Get:19 http://deb.debian.org/debian/ stretch/main perl-doc all 5.24.1-3+deb9u7 [7145 kB] Get:20 http://deb.debian.org/debian/ stretch/main perl amd64 5.24.1-3+deb9u7 [218 kB] Get:21 http://deb.debian.org/debian/ stretch/main perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:22 http://deb.debian.org/debian/ stretch/main libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:23 http://deb.debian.org/debian/ stretch/main libclass-xsaccessor-perl amd64 1.19-2+b7 [36.7 kB] Get:24 http://deb.debian.org/debian/ stretch/main libcommon-sense-perl amd64 3.74-2 [23.6 kB] Get:25 http://deb.debian.org/debian/ stretch/main gcc-6-base amd64 6.3.0-18+deb9u1 [180 kB] Get:26 http://deb.debian.org/debian/ stretch/main clustalx amd64 2.1+lgpl-5 [455 kB] Get:27 http://deb.debian.org/debian/ stretch/main libboost-date-time1.62.0 amd64 1.62.0+dfsg-4 [42.9 kB] Get:28 http://deb.debian.org/debian/ stretch/main libboost-iostreams1.62.0 amd64 1.62.0+dfsg-4 [50.8 kB] Get:29 http://deb.debian.org/debian/ stretch/main libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:30 http://deb.debian.org/debian/ stretch/main libboost-regex1.62.0 amd64 1.62.0+dfsg-4 [288 kB] Get:31 http://deb.debian.org/debian/ stretch/main libboost-serialization1.62.0 amd64 1.62.0+dfsg-4 [125 kB] Get:32 http://deb.debian.org/debian/ stretch/main libboost-thread1.62.0 amd64 1.62.0+dfsg-4 [71.5 kB] Get:33 http://deb.debian.org/debian/ stretch/main proftmb amd64 1.1.12-6+b1 [396 kB] Get:34 http://deb.debian.org/debian/ stretch/main altree amd64 1.3.1-4+b2 [338 kB] Get:35 http://deb.debian.org/debian/ stretch/main libglew2.0 amd64 2.0.0-3+b1 [143 kB] Get:36 http://deb.debian.org/debian/ stretch/main python-ballview amd64 1.4.3~beta1-3 [226 kB] Get:37 http://deb.debian.org/debian/ stretch/main libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:38 http://deb.debian.org/debian/ stretch/main librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:39 http://deb.debian.org/debian/ stretch/main libfabric1 amd64 1.4.0-1 [259 kB] Get:40 http://deb.debian.org/debian/ stretch/main ray amd64 2.3.1-4+b1 [594 kB] Get:41 http://deb.debian.org/debian/ stretch/main openmpi-common all 2.0.2-2 [149 kB] Get:42 http://deb.debian.org/debian/ stretch/main openmpi-bin amd64 2.0.2-2 [186 kB] Get:43 http://deb.debian.org/debian/ stretch/main zalign amd64 0.9.1-2+b3 [48.6 kB] Get:44 http://deb.debian.org/debian/ stretch/main libboost-mpi1.62.0 amd64 1.62.0+dfsg-4 [70.6 kB] Get:45 http://deb.debian.org/debian/ stretch/main prime-phylo amd64 1.0.11-4+b3 [856 kB] Get:46 http://deb.debian.org/debian/ stretch/main libopenmpi2 amd64 2.0.2-2 [2008 kB] Get:47 http://deb.debian.org/debian/ stretch/main ampliconnoise amd64 1.29-6 [476 kB] Get:48 http://deb.debian.org/debian/ stretch/main libtamuanova-0.2 amd64 0.2-4 [7610 B] Get:49 http://deb.debian.org/debian/ stretch/main adun.app amd64 0.81-9+b2 [504 kB] Get:50 http://deb.debian.org/debian/ stretch/main adun-core amd64 0.81-9+b2 [757 kB] Get:51 http://deb.debian.org/debian/ stretch/main libgif7 amd64 5.1.4-0.4 [43.1 kB] Get:52 http://deb.debian.org/debian/ stretch/main libopenjp2-7 amd64 2.1.2-1.1+deb9u4 [122 kB] Get:53 http://deb.debian.org/debian/ stretch/main gnustep-gui-runtime amd64 0.25.0-4+b1 [155 kB] Get:54 http://deb.debian.org/debian/ stretch/main imagemagick-common all 8:6.9.7.4+dfsg-11+deb9u8 [1406 B] Get:55 http://deb.debian.org/debian/ stretch/main imagemagick-6-common all 8:6.9.7.4+dfsg-11+deb9u8 [185 kB] Get:56 http://deb.debian.org/debian/ stretch/main libmagickcore-6.q16-3 amd64 8:6.9.7.4+dfsg-11+deb9u8 [1743 kB] Get:57 http://deb.debian.org/debian/ stretch/main libgnustep-gui0.25 amd64 0.25.0-4+b1 [1587 kB] Get:58 http://deb.debian.org/debian/ stretch/main gnustep-back-common amd64 0.25.0-2 [108 kB] Get:59 http://deb.debian.org/debian/ stretch/main gnustep-back0.25-cairo amd64 0.25.0-2 [245 kB] Get:60 http://deb.debian.org/debian/ stretch/main gnustep-back0.25 all 0.25.0-2 [82.5 kB] Get:61 http://deb.debian.org/debian/ stretch/main libpgtypes3 amd64 9.6.17-0+deb9u1 [41.3 kB] Get:62 http://deb.debian.org/debian/ stretch/main libecpg6 amd64 9.6.17-0+deb9u1 [85.7 kB] Get:63 http://deb.debian.org/debian/ stretch/main libmariadbclient18 amd64 10.1.45-0+deb9u1 [785 kB] Get:64 http://deb.debian.org/debian/ stretch/main libperformance0.5 amd64 0.5.0-1 [49.2 kB] Get:65 http://deb.debian.org/debian/ stretch/main libsqlclient1.7 amd64 1.7.3-2.1 [72.4 kB] Get:66 http://deb.debian.org/debian/ stretch/main libgnustep-dl2-0d amd64 0.12.0-15.1 [591 kB] Get:67 http://deb.debian.org/debian/ stretch/main libsteptalk0 amd64 0.10.0-6+b3 [161 kB] Get:68 http://deb.debian.org/debian/ stretch/main libreadline7 amd64 7.0-3 [151 kB] Get:69 http://deb.debian.org/debian/ stretch/main steptalk amd64 0.10.0-6+b3 [88.8 kB] Get:70 http://deb.debian.org/debian/ stretch/main libball1.4 amd64 1.4.3~beta1-3 [3236 kB] Get:71 http://deb.debian.org/debian/ stretch/main theseus amd64 3.3.0-5+b1 [432 kB] Get:72 http://deb.debian.org/debian/ stretch/main clonalframe amd64 1.2-5 [49.2 kB] Get:73 http://deb.debian.org/debian/ stretch/main libgsl2 amd64 2.3+dfsg-1 [893 kB] Get:74 http://deb.debian.org/debian/ stretch/main python-ball amd64 1.4.3~beta1-3 [886 kB] Get:75 http://deb.debian.org/debian/ stretch/main libboost-filesystem1.62.0 amd64 1.62.0+dfsg-4 [63.2 kB] Get:76 http://deb.debian.org/debian/ stretch/main mira-assembler amd64 4.9.6-2 [2282 kB] Get:77 http://deb.debian.org/debian/ stretch/main libnettle6 amd64 3.3-1+b2 [192 kB] Get:78 http://deb.debian.org/debian/ stretch/main libhogweed4 amd64 3.3-1+b2 [136 kB] Get:79 http://deb.debian.org/debian/ stretch/main libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:80 http://deb.debian.org/debian/ stretch/main ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:81 http://deb.debian.org/debian/ stretch/main python-htseq amd64 0.6.1p1-4 [188 kB] Get:82 http://deb.debian.org/debian/ stretch/main python-scipy amd64 0.18.1-2 [8933 kB] Get:83 http://deb.debian.org/debian/ stretch/main libstdc++6 amd64 6.3.0-18+deb9u1 [396 kB] Get:84 http://deb.debian.org/debian/ stretch/main libboost-system1.62.0 amd64 1.62.0+dfsg-4 [32.4 kB] Get:85 http://deb.debian.org/debian/ stretch/main libboost-chrono1.62.0 amd64 1.62.0+dfsg-4 [36.0 kB] Get:86 http://deb.debian.org/debian/ stretch/main libboost-math1.62.0 amd64 1.62.0+dfsg-4 [313 kB] Get:87 http://deb.debian.org/debian/ stretch/main libboost-program-options1.62.0 amd64 1.62.0+dfsg-4 [159 kB] Get:88 http://deb.debian.org/debian/ stretch/main libboost-random1.62.0 amd64 1.62.0+dfsg-4 [35.5 kB] Get:89 http://deb.debian.org/debian/ stretch/main libboost-timer1.62.0 amd64 1.62.0+dfsg-4 [34.5 kB] Get:90 http://deb.debian.org/debian/ stretch/main liblog4cpp5v5 amd64 1.1.1-3 [102 kB] Get:91 http://deb.debian.org/debian/ stretch/main libzeep3.0v5 amd64 3.0.2-4+b2 [435 kB] Get:92 http://deb.debian.org/debian/ stretch/main mrs amd64 6.0.5+dfsg-2+b2 [969 kB] Get:93 http://deb.debian.org/debian/ stretch/main liblua5.2-0 amd64 5.2.4-1.1+b2 [110 kB] Get:94 http://deb.debian.org/debian/ stretch/main libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:95 http://deb.debian.org/debian/ stretch/main libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:96 http://deb.debian.org/debian/ stretch/main apache2-utils amd64 2.4.25-3+deb9u9 [218 kB] Get:97 http://deb.debian.org/debian/ stretch/main apache2-data all 2.4.25-3+deb9u9 [162 kB] Get:98 http://deb.debian.org/debian/ stretch/main apache2 amd64 2.4.25-3+deb9u9 [237 kB] Get:99 http://deb.debian.org/debian/ stretch/main apache2-bin amd64 2.4.25-3+deb9u9 [1185 kB] Get:100 http://deb.debian.org/debian/ stretch/main libapache2-mod-perl2 amd64 2.0.10-2+deb9u1 [886 kB] Get:101 http://deb.debian.org/debian/ stretch/main libfcgi-perl amd64 0.78-2 [38.2 kB] Get:102 http://deb.debian.org/debian/ stretch/main libdbd-mysql-perl amd64 4.041-2 [114 kB] Get:103 http://deb.debian.org/debian/ stretch/main libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:104 http://deb.debian.org/debian/ stretch/main libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:105 http://deb.debian.org/debian/ stretch/main libcrypt-random-seed-perl all 0.03-1 [22.5 kB] Get:106 http://deb.debian.org/debian/ stretch/main libmath-random-isaac-perl all 1.003-1 [22.6 kB] Get:107 http://deb.debian.org/debian/ stretch/main libbytes-random-secure-perl all 0.28-1 [29.4 kB] Get:108 http://deb.debian.org/debian/ stretch/main libcrypt-ssleay-perl amd64 0.73.04-2 [57.1 kB] Get:109 http://deb.debian.org/debian/ stretch/main libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:110 http://deb.debian.org/debian/ stretch/main perl-openssl-defaults amd64 3 [6782 B] Get:111 http://deb.debian.org/debian/ stretch/main libyaml-libyaml-perl amd64 0.63-2 [68.8 kB] Get:112 http://deb.debian.org/debian/ stretch/main libsub-name-perl amd64 0.21-1 [13.1 kB] Get:113 http://deb.debian.org/debian/ stretch/main libindirect-perl amd64 0.37-1+b1 [28.1 kB] Get:114 http://deb.debian.org/debian/ stretch/main libhtml-parser-perl amd64 3.72-3 [104 kB] Get:115 http://deb.debian.org/debian/ stretch/main perl-tk amd64 1:804.033-1+b3 [1943 kB] Get:116 http://deb.debian.org/debian/ stretch/main libdbd-pg-perl amd64 3.5.3-1+b2 [203 kB] Get:117 http://deb.debian.org/debian/ stretch/main libbit-vector-perl amd64 7.4-1+b2 [146 kB] Get:118 http://deb.debian.org/debian/ stretch/main libdate-calc-perl all 6.4-1 [194 kB] Get:119 http://deb.debian.org/debian/ stretch/main libdate-calc-xs-perl amd64 6.4-1+b2 [54.3 kB] Get:120 http://deb.debian.org/debian/ stretch/main sqlite3 amd64 3.16.2-5+deb9u1 [784 kB] Get:121 http://deb.debian.org/debian/ stretch/main libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:122 http://deb.debian.org/debian/ stretch/main libdbd-sqlite3-perl amd64 1.54-1 [164 kB] Get:123 http://deb.debian.org/debian/ stretch/main libguard-perl amd64 1.023-1+b2 [15.8 kB] Get:124 http://deb.debian.org/debian/ stretch/main libdbi-perl amd64 1.636-1+b1 [766 kB] Get:125 http://deb.debian.org/debian/ stretch/main libstaden-read11 amd64 1.14.8-2 [311 kB] Get:126 http://deb.debian.org/debian/ stretch/main libbio-scf-perl amd64 1.03-3 [20.3 kB] Get:127 http://deb.debian.org/debian/ stretch/main libparams-classify-perl amd64 0.013-6+b1 [24.4 kB] Get:128 http://deb.debian.org/debian/ stretch/main libparams-util-perl amd64 1.07-3+b1 [22.7 kB] Get:129 http://deb.debian.org/debian/ stretch/main libpadwalker-perl amd64 2.2-2+b1 [19.7 kB] Get:130 http://deb.debian.org/debian/ stretch/main libstring-approx-perl amd64 3.27-1+b4 [40.0 kB] Get:131 http://deb.debian.org/debian/ stretch/main libconvert-binary-c-perl amd64 0.78-1+b1 [271 kB] Get:132 http://deb.debian.org/debian/ stretch/main libmultidimensional-perl amd64 0.012-1+b1 [8146 B] Get:133 http://deb.debian.org/debian/ stretch/main libtext-charwidth-perl amd64 0.04-7+b5 [9870 B] Get:134 http://deb.debian.org/debian/ stretch/main libbareword-filehandles-perl amd64 0.004-1+b1 [8572 B] Get:135 http://deb.debian.org/debian/ stretch/main liblexical-sealrequirehints-perl amd64 0.010-1+b1 [15.9 kB] Get:136 http://deb.debian.org/debian/ stretch/main libclone-perl amd64 0.38-2+b1 [13.6 kB] Get:137 http://deb.debian.org/debian/ stretch/main perl-base amd64 5.24.1-3+deb9u7 [1346 kB] Get:138 http://deb.debian.org/debian/ stretch/main liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:139 http://deb.debian.org/debian/ stretch/main libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:140 http://deb.debian.org/debian/ stretch/main libace-perl amd64 1.92-4+b1 [286 kB] Get:141 http://deb.debian.org/debian/ stretch/main libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:142 http://deb.debian.org/debian/ stretch/main libxml-libxslt-perl amd64 1.95-1+b1 [46.8 kB] Get:143 http://deb.debian.org/debian/ stretch/main libbsd-resource-perl amd64 1.2910-1+b1 [33.7 kB] Get:144 http://deb.debian.org/debian/ stretch/main libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:145 http://deb.debian.org/debian/ stretch/main libfile-fcntllock-perl amd64 0.22-3+b2 [35.3 kB] Get:146 http://deb.debian.org/debian/ stretch/main libterm-readkey-perl amd64 2.37-1 [27.2 kB] Get:147 http://deb.debian.org/debian/ stretch/main libdevel-caller-perl amd64 2.06-1+b4 [11.8 kB] Get:148 http://deb.debian.org/debian/ stretch/main libunicode-map-perl amd64 0.112-11+b3 [145 kB] Get:149 http://deb.debian.org/debian/ stretch/main libtype-tiny-xs-perl amd64 0.012-1+b2 [26.8 kB] Get:150 http://deb.debian.org/debian/ stretch/main libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:151 http://deb.debian.org/debian/ stretch/main dbus amd64 1.10.32-0+deb9u1 [213 kB] Get:152 http://deb.debian.org/debian/ stretch/main libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:153 http://deb.debian.org/debian/ stretch/main libnet-dbus-perl amd64 1.1.0-4+b1 [179 kB] Get:154 http://deb.debian.org/debian/ stretch/main libtext-soundex-perl amd64 3.4-1+b4 [12.8 kB] Get:155 http://deb.debian.org/debian/ stretch/main libtypes-serialiser-perl all 1.0-1 [12.7 kB] Get:156 http://deb.debian.org/debian/ stretch/main libjson-xs-perl amd64 3.030-1 [91.6 kB] Get:157 http://deb.debian.org/debian/ stretch/main libev-perl amd64 4.22-1+b1 [240 kB] Get:158 http://deb.debian.org/debian/ stretch/main libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:159 http://deb.debian.org/debian/ stretch/main libb-hooks-op-check-perl amd64 0.19-3+b1 [10.4 kB] Get:160 http://deb.debian.org/debian/ stretch/main libasync-interrupt-perl amd64 1.21-1+b2 [33.9 kB] Get:161 http://deb.debian.org/debian/ stretch/main libperlio-gzip-perl amd64 0.19-1+b2 [17.3 kB] Get:162 http://deb.debian.org/debian/ stretch/main libio-pty-perl amd64 1:1.08-1.1+b2 [33.6 kB] Get:163 http://deb.debian.org/debian/ stretch/main libanyevent-perl amd64 7.130-2 [391 kB] Get:164 http://deb.debian.org/debian/ stretch/main libmath-tamuanova-perl amd64 1.0.2-2+b4 [13.5 kB] Get:165 http://deb.debian.org/debian/ stretch/main libipc-sharelite-perl amd64 0.17-4 [24.0 kB] Get:166 http://deb.debian.org/debian/ stretch/main libmath-random-mt-perl amd64 1.17-1+b2 [15.2 kB] Get:167 http://deb.debian.org/debian/ stretch/main libclass-c3-xs-perl amd64 0.14-1+b1 [16.3 kB] Get:168 http://deb.debian.org/debian/ stretch/main libdevel-lexalias-perl amd64 0.05-1+b4 [8752 B] Get:169 http://deb.debian.org/debian/ stretch/main liblist-moreutils-perl amd64 0.416-1+b1 [63.0 kB] Get:170 http://deb.debian.org/debian/ stretch/main libai-fann-perl amd64 0.10-3+b2 [28.4 kB] Get:171 http://deb.debian.org/debian/ stretch/main libscalar-list-utils-perl amd64 1:1.47-1 [54.4 kB] Get:172 http://deb.debian.org/debian/ stretch/main liblist-allutils-perl all 0.12-1 [31.9 kB] Get:173 http://deb.debian.org/debian/ stretch/main libipc-system-simple-perl all 1.25-3 [26.9 kB] Get:174 http://deb.debian.org/debian/ stretch/main libfile-basedir-perl all 0.07-1 [17.5 kB] Get:175 http://deb.debian.org/debian/ stretch/main libgcc1 amd64 1:6.3.0-18+deb9u1 [38.0 kB] Get:176 http://deb.debian.org/debian/ stretch/main libqt4-opengl amd64 4:4.8.7+dfsg-11 [346 kB] Get:177 http://deb.debian.org/debian/ stretch/main libqt4-svg amd64 4:4.8.7+dfsg-11 [185 kB] Get:178 http://deb.debian.org/debian/ stretch/main libqtgui4 amd64 4:4.8.7+dfsg-11 [4150 kB] Get:179 http://deb.debian.org/debian/ stretch/main liblz4-1 amd64 0.0~r131-2+b1 [33.3 kB] Get:180 http://deb.debian.org/debian/ stretch/main libip4tc0 amd64 1.6.0+snapshot20161117-6 [67.8 kB] Get:181 http://deb.debian.org/debian/ stretch/main libseccomp2 amd64 2.3.1-2.1+deb9u1 [40.7 kB] Get:182 http://deb.debian.org/debian/ stretch/main libmnl0 amd64 1.0.4-2 [12.2 kB] Get:183 http://deb.debian.org/debian/ stretch/main iproute2 amd64 4.9.0-1+deb9u1 [635 kB] Get:184 http://deb.debian.org/debian/ stretch/main libsystemd0 amd64 232-25+deb9u12 [282 kB] Get:185 http://deb.debian.org/debian/ stretch/main libudev1 amd64 232-25+deb9u12 [126 kB] Get:186 http://deb.debian.org/debian/ stretch/main systemd amd64 232-25+deb9u12 [2469 kB] Get:187 http://deb.debian.org/debian/ stretch/main ifupdown amd64 0.8.19 [76.8 kB] Get:188 http://deb.debian.org/debian/ stretch/main udev amd64 232-25+deb9u12 [1113 kB] Get:189 http://deb.debian.org/debian/ stretch/main libpam-systemd amd64 232-25+deb9u12 [189 kB] Get:190 http://deb.debian.org/debian/ stretch/main libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:191 http://deb.debian.org/debian/ stretch/main procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:192 http://deb.debian.org/debian/ stretch/main libqt4-xmlpatterns amd64 4:4.8.7+dfsg-11 [1138 kB] Get:193 http://deb.debian.org/debian/ stretch/main libqt4-network amd64 4:4.8.7+dfsg-11 [606 kB] Get:194 http://deb.debian.org/debian/ stretch/main libqtdbus4 amd64 4:4.8.7+dfsg-11 [232 kB] Get:195 http://deb.debian.org/debian/ stretch/main libqt4-test amd64 4:4.8.7+dfsg-11 [107 kB] Get:196 http://deb.debian.org/debian/ stretch/main libqt4-sql-mysql amd64 4:4.8.7+dfsg-11 [76.9 kB] Get:197 http://deb.debian.org/debian/ stretch/main libqt4-sql amd64 4:4.8.7+dfsg-11 [145 kB] Get:198 http://deb.debian.org/debian/ stretch/main libqt4-xml amd64 4:4.8.7+dfsg-11 [143 kB] Get:199 http://deb.debian.org/debian/ stretch/main libqtcore4 amd64 4:4.8.7+dfsg-11 [1598 kB] Get:200 http://deb.debian.org/debian/ stretch/main libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:201 http://deb.debian.org/debian/ stretch/main libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:202 http://deb.debian.org/debian/ stretch/main libopenblas-base amd64 0.2.19-3 [3793 kB] Get:203 http://deb.debian.org/debian/ stretch/main python2.7-dev amd64 2.7.13-2+deb9u3 [290 kB] Get:204 http://deb.debian.org/debian/ stretch/main libpython2.7-dev amd64 2.7.13-2+deb9u3 [28.2 MB] Get:205 http://deb.debian.org/debian/ stretch/main python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:206 http://deb.debian.org/debian/ stretch/main libpython2.7 amd64 2.7.13-2+deb9u3 [1071 kB] Get:207 http://deb.debian.org/debian/ stretch/main libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:208 http://deb.debian.org/debian/ stretch/main libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:209 http://deb.debian.org/debian/ stretch/main python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:210 http://deb.debian.org/debian/ stretch/main libopus0 amd64 1.2~alpha2-1 [171 kB] Get:211 http://deb.debian.org/debian/ stretch/main gstreamer1.0-plugins-base amd64 1.10.4-1+deb9u1 [1497 kB] Get:212 http://deb.debian.org/debian/ stretch/main libgstreamer1.0-0 amd64 1.10.4-1 [1962 kB] Get:213 http://deb.debian.org/debian/ stretch/main libgstreamer-plugins-base1.0-0 amd64 1.10.4-1+deb9u1 [1646 kB] Get:214 http://deb.debian.org/debian/ stretch/main libqtwebkit4 amd64 2.3.4.dfsg-9.1 [8882 kB] Get:215 http://deb.debian.org/debian/ stretch/main libballview1.4 amd64 1.4.3~beta1-3 [1440 kB] Get:216 http://deb.debian.org/debian/ stretch/main python-minimal amd64 2.7.13-2 [40.5 kB] Get:217 http://deb.debian.org/debian/ stretch/main python-all-dev amd64 2.7.13-2 [962 B] Get:218 http://deb.debian.org/debian/ stretch/main python-all amd64 2.7.13-2 [942 B] Get:219 http://deb.debian.org/debian/ stretch/main python-dev amd64 2.7.13-2 [1126 B] Get:220 http://deb.debian.org/debian/ stretch/main python amd64 2.7.13-2 [154 kB] Get:221 http://deb.debian.org/debian/ stretch/main libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:222 http://deb.debian.org/debian/ stretch/main libpython-all-dev amd64 2.7.13-2 [960 B] Get:223 http://deb.debian.org/debian/ stretch/main libpython-dev amd64 2.7.13-2 [20.1 kB] Get:224 http://deb.debian.org/debian/ stretch/main libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:225 http://deb.debian.org/debian/ stretch/main libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:226 http://deb.debian.org/debian/ stretch/main libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:227 http://deb.debian.org/debian/ stretch/main libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:228 http://deb.debian.org/debian/ stretch/main libgmp-dev amd64 2:6.1.2+dfsg-1 [631 kB] Get:229 http://deb.debian.org/debian/ stretch/main libgmpxx4ldbl amd64 2:6.1.2+dfsg-1 [22.2 kB] Get:230 http://deb.debian.org/debian/ stretch/main libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:231 http://deb.debian.org/debian/ stretch/main libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:232 http://deb.debian.org/debian/ stretch/main libgc1c2 amd64 1:7.4.2-8 [208 kB] Get:233 http://deb.debian.org/debian/ stretch/main libobjc4 amd64 6.3.0-18+deb9u1 [49.5 kB] Get:234 http://deb.debian.org/debian/ stretch/main libgnustep-base1.24 amd64 1.24.9-3.1+deb9u1 [1276 kB] Get:235 http://deb.debian.org/debian/ stretch/main libaspell15 amd64 0.60.7~20110707-3+b2 [330 kB] Get:236 http://deb.debian.org/debian/ stretch/main aspell amd64 0.60.7~20110707-3+b2 [226 kB] Get:237 http://deb.debian.org/debian/ stretch/main libcupsimage2 amd64 2.2.1-8+deb9u6 [122 kB] Get:238 http://deb.debian.org/debian/ stretch/main libcups2 amd64 2.2.1-8+deb9u6 [307 kB] Get:239 http://deb.debian.org/debian/ stretch/main libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:240 http://deb.debian.org/debian/ stretch/main libcairo2 amd64 1.14.8-1 [771 kB] Get:241 http://deb.debian.org/debian/ stretch/main libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:242 http://deb.debian.org/debian/ stretch/main libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:243 http://deb.debian.org/debian/ stretch/main libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:244 http://deb.debian.org/debian/ stretch/main libpq5 amd64 9.6.17-0+deb9u1 [137 kB] Get:245 http://deb.debian.org/debian/ stretch/main clustalo amd64 1.2.4-1 [263 kB] Get:246 http://deb.debian.org/debian/ stretch/main libxm4 amd64 2.3.4-13 [1017 kB] Get:247 http://deb.debian.org/debian/ stretch/main libmotif-common all 2.3.4-13 [28.4 kB] Get:248 http://deb.debian.org/debian/ stretch/main ncbi-tools-x11 amd64 6.1.20170106+dfsg1-0+deb9u1 [1120 kB] Get:249 http://deb.debian.org/debian/ stretch/main libvibrant6b amd64 6.1.20170106+dfsg1-0+deb9u1 [1275 kB] Get:250 http://deb.debian.org/debian/ stretch/main blast2 all 1:2.6.0-1 [9084 B] Get:251 http://deb.debian.org/debian/ stretch/main ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:252 http://deb.debian.org/debian/ stretch/main ncbi-tools-bin amd64 6.1.20170106+dfsg1-0+deb9u1 [521 kB] Get:253 http://deb.debian.org/debian/ stretch/main libncbi6 amd64 6.1.20170106+dfsg1-0+deb9u1 [4024 kB] Get:254 http://deb.debian.org/debian/ stretch/main ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:255 http://deb.debian.org/debian/ stretch/main libpcre16-3 amd64 2:8.39-3 [258 kB] Get:256 http://deb.debian.org/debian/ stretch/main libpcre32-3 amd64 2:8.39-3 [248 kB] Get:257 http://deb.debian.org/debian/ stretch/main libpcre3-dev amd64 2:8.39-3 [647 kB] Get:258 http://deb.debian.org/debian/ stretch/main libpcrecpp0v5 amd64 2:8.39-3 [151 kB] Get:259 http://deb.debian.org/debian/ stretch/main libpcre3 amd64 2:8.39-3 [337 kB] Get:260 http://deb.debian.org/debian/ stretch/main libaprutil1-ldap amd64 1.5.4-3 [17.4 kB] Get:261 http://deb.debian.org/debian/ stretch/main libaprutil1-dbd-sqlite3 amd64 1.5.4-3 [19.3 kB] Get:262 http://deb.debian.org/debian/ stretch/main libaprutil1 amd64 1.5.4-3 [85.8 kB] Get:263 http://deb.debian.org/debian/ stretch/main libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:264 http://deb.debian.org/debian/ stretch/main libpsl5 amd64 0.17.0-3 [41.8 kB] Get:265 http://deb.debian.org/debian/ stretch/main librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:266 http://deb.debian.org/debian/ stretch/main libcurl3-gnutls amd64 7.52.1-5+deb9u10 [290 kB] Get:267 http://deb.debian.org/debian/ stretch/main libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:268 http://deb.debian.org/debian/ stretch/main init amd64 1.48 [12.0 kB] Get:269 http://deb.debian.org/debian/ stretch/main libpython3.5-minimal amd64 3.5.3-1+deb9u1 [573 kB] Get:270 http://deb.debian.org/debian/ stretch/main python3.5-minimal amd64 3.5.3-1+deb9u1 [1691 kB] Get:271 http://deb.debian.org/debian/ stretch/main libpython3.5-stdlib amd64 3.5.3-1+deb9u1 [2167 kB] Get:272 http://deb.debian.org/debian/ stretch/main python3.5 amd64 3.5.3-1+deb9u1 [229 kB] Get:273 http://deb.debian.org/debian/ stretch/main python3-minimal amd64 3.5.3-1 [35.3 kB] Get:274 http://deb.debian.org/debian/ stretch/main python3 amd64 3.5.3-1 [21.6 kB] Get:275 http://deb.debian.org/debian/ stretch/main libpython3-stdlib amd64 3.5.3-1 [18.6 kB] Get:276 http://deb.debian.org/debian/ stretch/main findutils amd64 4.6.0+git+20161106-2 [622 kB] Get:277 http://deb.debian.org/debian/ stretch/main libapt-pkg5.0 amd64 1.4.10 [917 kB] Get:278 http://deb.debian.org/debian/ stretch/main apt amd64 1.4.10 [1232 kB] Get:279 http://deb.debian.org/debian/ stretch/main libptexenc1 amd64 2016.20160513.41080.dfsg-2+deb9u1 [58.0 kB] Get:280 http://deb.debian.org/debian/ stretch/main libkpathsea6 amd64 2016.20160513.41080.dfsg-2+deb9u1 [160 kB] Get:281 http://deb.debian.org/debian/ stretch/main texlive-extra-utils all 2016.20170123-5 [19.8 MB] Get:282 http://deb.debian.org/debian/ stretch/main texlive-font-utils all 2016.20170123-5 [1736 kB] Get:283 http://deb.debian.org/debian/ stretch/main texlive-latex-extra all 2016.20170123-5 [10.6 MB] Get:284 http://deb.debian.org/debian/ stretch/main texlive-fonts-extra all 2016.20170123-5 [256 MB] Get:285 http://deb.debian.org/debian/ stretch/main texlive-latex-extra-doc all 2016.20170123-5 [364 MB] Get:286 http://deb.debian.org/debian/ stretch/main texlive-fonts-extra-doc all 2016.20170123-5 [82.5 MB] Get:287 http://deb.debian.org/debian/ stretch/main texlive-fonts-recommended all 2016.20170123-5 [5307 kB] Get:288 http://deb.debian.org/debian/ stretch/main texlive-fonts-recommended-doc all 2016.20170123-5 [2660 kB] Get:289 http://deb.debian.org/debian/ stretch/main texlive-generic-recommended all 2016.20170123-5 [2889 kB] Get:290 http://deb.debian.org/debian/ stretch/main texlive-latex-base all 2016.20170123-5 [861 kB] Get:291 http://deb.debian.org/debian/ stretch/main texlive-latex-base-doc all 2016.20170123-5 [45.6 MB] Get:292 http://deb.debian.org/debian/ stretch/main texlive-latex-recommended all 2016.20170123-5 [13.2 MB] Get:293 http://deb.debian.org/debian/ stretch/main texlive-latex-recommended-doc all 2016.20170123-5 [40.6 MB] Get:294 http://deb.debian.org/debian/ stretch/main texlive-pictures all 2016.20170123-5 [3908 kB] Get:295 http://deb.debian.org/debian/ stretch/main texlive-pictures-doc all 2016.20170123-5 [105 MB] Get:296 http://deb.debian.org/debian/ stretch/main texlive-pstricks all 2016.20170123-5 [26.2 MB] Get:297 http://deb.debian.org/debian/ stretch/main texlive-pstricks-doc all 2016.20170123-5 [238 MB] Get:298 http://deb.debian.org/debian/ stretch/main texlive-base all 2016.20170123-5 [15.8 MB] Get:299 http://deb.debian.org/debian/ stretch/main tex-common all 6.06 [566 kB] Get:300 http://deb.debian.org/debian/ stretch/main texlive-binaries amd64 2016.20160513.41080.dfsg-2+deb9u1 [7404 kB] Get:301 http://deb.debian.org/debian/ stretch/main libtexlua52 amd64 2016.20160513.41080.dfsg-2+deb9u1 [111 kB] Get:302 http://deb.debian.org/debian/ stretch/main libtexluajit2 amd64 2016.20160513.41080.dfsg-2+deb9u1 [250 kB] Get:303 http://deb.debian.org/debian/ stretch/main t1utils amd64 1.39-2 [59.0 kB] Get:304 http://deb.debian.org/debian/ stretch/main ghostscript amd64 9.26a~dfsg-0+deb9u6 [99.2 kB] Get:305 http://deb.debian.org/debian/ stretch/main libgs9 amd64 9.26a~dfsg-0+deb9u6 [2213 kB] Get:306 http://deb.debian.org/debian/ stretch/main libgs9-common all 9.26a~dfsg-0+deb9u6 [5143 kB] Get:307 http://deb.debian.org/debian/ stretch/main libharfbuzz-icu0 amd64 1.4.2-1 [466 kB] Get:308 http://deb.debian.org/debian/ stretch/main libpoppler64 amd64 0.48.0-2+deb9u2 [1287 kB] Get:309 http://deb.debian.org/debian/ stretch/main preview-latex-style all 11.90-1 [200 kB] Get:310 http://deb.debian.org/debian/ stretch/main fonts-lmodern all 2.004.5-3 [4540 kB] Get:311 http://deb.debian.org/debian/ stretch/main lmodern all 2.004.5-3 [9461 kB] Get:312 http://deb.debian.org/debian/ stretch/main fonts-croscore all 20161116-1 [2138 kB] Get:313 http://deb.debian.org/debian/ stretch/main fonts-noto-hinted all 20161116-1 [5075 kB] Get:314 http://deb.debian.org/debian/ stretch/main fonts-roboto-hinted all 2:0~20160106-2 [2922 kB] Get:315 http://deb.debian.org/debian/ stretch/main fonts-sil-gentiumplus all 5.000-1 [2811 kB] Get:316 http://deb.debian.org/debian/ stretch/main fonts-sil-gentiumplus-compact all 5.000-2 [1522 kB] Get:317 http://deb.debian.org/debian/ stretch/main libdouble-conversion1 amd64 2.0.1-4 [33.7 kB] Get:318 http://deb.debian.org/debian/ stretch/main libqt5core5a amd64 5.7.1+dfsg-3+deb9u2 [1839 kB] Get:319 http://deb.debian.org/debian/ stretch/main libwayland-server0 amd64 1.12.0-1+deb9u1 [30.6 kB] Get:320 http://deb.debian.org/debian/ stretch/main libgbm1 amd64 13.0.6-1+b2 [59.2 kB] Get:321 http://deb.debian.org/debian/ stretch/main libxcb-xfixes0 amd64 1.12-1 [99.6 kB] Get:322 http://deb.debian.org/debian/ stretch/main libegl1-mesa amd64 13.0.6-1+b2 [112 kB] Get:323 http://deb.debian.org/debian/ stretch/main libevdev2 amd64 1.5.6+dfsg-1 [30.0 kB] Get:324 http://deb.debian.org/debian/ stretch/main libmtdev1 amd64 1.1.5-1+b1 [22.3 kB] Get:325 http://deb.debian.org/debian/ stretch/main libwacom-common all 0.22-1 [31.3 kB] Get:326 http://deb.debian.org/debian/ stretch/main libwacom2 amd64 0.22-1+b1 [18.0 kB] Get:327 http://deb.debian.org/debian/ stretch/main libinput-bin amd64 1.6.3-1 [11.1 kB] Get:328 http://deb.debian.org/debian/ stretch/main libinput10 amd64 1.6.3-1 [75.7 kB] Get:329 http://deb.debian.org/debian/ stretch/main libqt5dbus5 amd64 5.7.1+dfsg-3+deb9u2 [217 kB] Get:330 http://deb.debian.org/debian/ stretch/main glib-networking-services amd64 2.50.0-1+deb9u1 [12.2 kB] Get:331 http://deb.debian.org/debian/ stretch/main glib-networking amd64 2.50.0-1+deb9u1 [57.0 kB] Get:332 http://deb.debian.org/debian/ stretch/main glib-networking-common all 2.50.0-1+deb9u1 [49.2 kB] Get:333 http://deb.debian.org/debian/ stretch/main libproxy1v5 amd64 0.4.14-2 [57.4 kB] Get:334 http://deb.debian.org/debian/ stretch/main libqt5network5 amd64 5.7.1+dfsg-3+deb9u2 [593 kB] Get:335 http://deb.debian.org/debian/ stretch/main libxcb-icccm4 amd64 0.4.1-1 [27.0 kB] Get:336 http://deb.debian.org/debian/ stretch/main libxcb-util0 amd64 0.3.8-3+b2 [23.0 kB] Get:337 http://deb.debian.org/debian/ stretch/main libxcb-image0 amd64 0.4.0-1+b2 [24.4 kB] Get:338 http://deb.debian.org/debian/ stretch/main libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:339 http://deb.debian.org/debian/ stretch/main libxcb-randr0 amd64 1.12-1 [107 kB] Get:340 http://deb.debian.org/debian/ stretch/main libxcb-render-util0 amd64 0.3.9-1 [18.0 kB] Get:341 http://deb.debian.org/debian/ stretch/main libxcb-xinerama0 amd64 1.12-1 [95.5 kB] Get:342 http://deb.debian.org/debian/ stretch/main libxcb-xkb1 amd64 1.12-1 [120 kB] Get:343 http://deb.debian.org/debian/ stretch/main libxkbcommon-x11-0 amd64 0.7.1-2~deb9u1 [39.1 kB] Get:344 http://deb.debian.org/debian/ stretch/main libqt5gui5 amd64 5.7.1+dfsg-3+deb9u2 [2449 kB] Get:345 http://deb.debian.org/debian/ stretch/main libqt5widgets5 amd64 5.7.1+dfsg-3+deb9u2 [2242 kB] Get:346 http://deb.debian.org/debian/ stretch/main libqt5printsupport5 amd64 5.7.1+dfsg-3+deb9u2 [199 kB] Get:347 http://deb.debian.org/debian/ stretch/main libqt5svg5 amd64 5.7.1~20161021-2+b2 [130 kB] Get:348 http://deb.debian.org/debian/ stretch/main libgdk-pixbuf2.0-0 amd64 2.36.5-2+deb9u2 [170 kB] Get:349 http://deb.debian.org/debian/ stretch/main libgdk-pixbuf2.0-common all 2.36.5-2+deb9u2 [311 kB] Get:350 http://deb.debian.org/debian/ stretch/main libatspi2.0-0 amd64 2.22.0-6+deb9u1 [60.9 kB] Get:351 http://deb.debian.org/debian/ stretch/main libatk-bridge2.0-0 amd64 2.22.0-2 [56.3 kB] Get:352 http://deb.debian.org/debian/ stretch/main libepoxy0 amd64 1.3.1-2 [176 kB] Get:353 http://deb.debian.org/debian/ stretch/main libwayland-egl1-mesa amd64 13.0.6-1+b2 [43.0 kB] Get:354 http://deb.debian.org/debian/ stretch/main adwaita-icon-theme all 3.22.0-1+deb9u1 [11.5 MB] Get:355 http://deb.debian.org/debian/ stretch/main libgtk-3-0 amd64 3.22.11-1 [2529 kB] Get:356 http://deb.debian.org/debian/ stretch/main libgtk-3-bin amd64 3.22.11-1 [110 kB] Get:357 http://deb.debian.org/debian/ stretch/main libgtk2.0-bin amd64 2.24.31-2 [47.1 kB] Get:358 http://deb.debian.org/debian/ stretch/main gtk-update-icon-cache amd64 3.22.11-1 [76.6 kB] Get:359 http://deb.debian.org/debian/ stretch/main libgtk2.0-0 amd64 2.24.31-2 [1800 kB] Get:360 http://deb.debian.org/debian/ stretch/main python-wxgtk3.0 amd64 3.0.2.0+dfsg-4 [5270 kB] Get:361 http://deb.debian.org/debian/ stretch/main treeviewx amd64 0.5.1+20100823-4 [182 kB] Get:362 http://deb.debian.org/debian/ stretch/main gentle amd64 1.9+cvs20100605+dfsg1-5 [3874 kB] Get:363 http://deb.debian.org/debian/ stretch/main libwxgtk3.0-0v5 amd64 3.0.2+dfsg-4 [4493 kB] Get:364 http://deb.debian.org/debian/ stretch/main libtinyxml2.6.2v5 amd64 2.6.2-4 [36.8 kB] Get:365 http://deb.debian.org/debian/ stretch/main libwxbase3.0-0v5 amd64 3.0.2+dfsg-4 [1073 kB] Get:366 http://deb.debian.org/debian/ stretch/main gnuplot-data all 5.0.5+dfsg1-6+deb9u1 [127 kB] Get:367 http://deb.debian.org/debian/ stretch/main gnuplot-qt amd64 5.0.5+dfsg1-6+deb9u1 [1038 kB] Get:368 http://deb.debian.org/debian/ stretch/main libasprintf-dev amd64 0.19.8.1-2+deb9u1 [29.0 kB] Get:369 http://deb.debian.org/debian/ stretch/main libasprintf0v5 amd64 0.19.8.1-2+deb9u1 [29.2 kB] Get:370 http://deb.debian.org/debian/ stretch/main cassiopee amd64 1.0.5-1+b1 [13.7 kB] Get:371 http://deb.debian.org/debian/ stretch/main libgflags2v5 amd64 2.1.2-4 [69.1 kB] Get:372 http://deb.debian.org/debian/ stretch/main libgoogle-glog0v5 amd64 0.3.4-2 [51.5 kB] Get:373 http://deb.debian.org/debian/ stretch/main libcassie1v5 amd64 1.0.5-1+b1 [38.2 kB] Get:374 http://deb.debian.org/debian/ stretch/main ipig amd64 0.0.r5-2 [166 kB] Get:375 http://deb.debian.org/debian/ stretch/main libcommons-net-java all 3.5-1 [281 kB] Get:376 http://deb.debian.org/debian/ stretch/main freecontact amd64 1.0.21-5 [335 kB] Get:377 http://deb.debian.org/debian/ stretch/main libfreecontact0v5 amd64 1.0.21-5 [70.1 kB] Get:378 http://deb.debian.org/debian/ stretch/main libxerces-c3.1 amd64 3.1.4+debian-2+deb9u1 [842 kB] Get:379 http://deb.debian.org/debian/ stretch/main fastx-toolkit amd64 0.0.14-3 [90.2 kB] Get:380 http://deb.debian.org/debian/ stretch/main libgtextutils0v5 amd64 0.7-4 [19.0 kB] Get:381 http://deb.debian.org/debian/ stretch/main beignet-opencl-icd amd64 1.3.0-4 [12.8 MB] Get:382 http://deb.debian.org/debian/ stretch/main mrbayes amd64 3.2.6+dfsg-1+b4 [588 kB] Get:383 http://deb.debian.org/debian/ stretch/main libhmsbeagle1v5 amd64 2.1.2+20160831-5 [116 kB] Get:384 http://deb.debian.org/debian/ stretch/main libreadline-dev amd64 7.0-3 [132 kB] Get:385 http://deb.debian.org/debian/ stretch/main relion-bin amd64 1.4+dfsg-2+b2 [188 kB] Get:386 http://deb.debian.org/debian/ stretch/main librelion-1.4-1 amd64 1.4+dfsg-2+b2 [537 kB] Get:387 http://deb.debian.org/debian/ stretch/main mariadb-common all 10.1.45-0+deb9u1 [28.6 kB] Get:388 http://deb.debian.org/debian/ stretch/main libaio1 amd64 0.3.110-3 [9412 B] Get:389 http://deb.debian.org/debian/ stretch/main libreadline5 amd64 5.2+dfsg-3+b1 [119 kB] Get:390 http://deb.debian.org/debian/ stretch/main mysql-client amd64 5.5.9999+default [1698 B] Get:391 http://deb.debian.org/debian/ stretch/main mariadb-client-core-10.1 amd64 10.1.45-0+deb9u1 [5127 kB] Get:392 http://deb.debian.org/debian/ stretch/main libjemalloc1 amd64 3.6.0-9.1 [89.8 kB] Get:393 http://deb.debian.org/debian/ stretch/main mariadb-client-10.1 amd64 10.1.45-0+deb9u1 [5923 kB] Get:394 http://deb.debian.org/debian/ stretch/main default-mysql-client all 1.0.2 [3050 B] Get:395 http://deb.debian.org/debian/ stretch/main default-jre amd64 2:1.8-58+deb9u1 [930 B] Get:396 http://deb.debian.org/debian/ stretch/main default-jre-headless amd64 2:1.8-58+deb9u1 [10.1 kB] Get:397 http://deb.debian.org/debian/ stretch/main openjdk-8-jre-headless amd64 8u252-b09-1~deb9u1 [27.4 MB] Get:398 http://deb.debian.org/debian/ stretch/main libatk-wrapper-java-jni amd64 0.33.3-13+deb9u1 [37.5 kB] Get:399 http://deb.debian.org/debian/ stretch/main libpulse0 amd64 10.0-1+deb9u1 [283 kB] Get:400 http://deb.debian.org/debian/ stretch/main openjdk-8-jre amd64 8u252-b09-1~deb9u1 [69.8 kB] Get:401 http://deb.debian.org/debian/ stretch/main cron amd64 3.0pl1-128+deb9u1 [95.4 kB] Get:402 http://deb.debian.org/debian/ stretch/main fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:403 http://deb.debian.org/debian/ stretch/main gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:404 http://deb.debian.org/debian/ stretch/main libmagickwand-6.q16-3 amd64 8:6.9.7.4+dfsg-11+deb9u8 [423 kB] Get:405 http://deb.debian.org/debian/ stretch/main libgphoto2-port12 amd64 2.5.12-1 [126 kB] Get:406 http://deb.debian.org/debian/ stretch/main libgphoto2-6 amd64 2.5.12-1 [841 kB] Get:407 http://deb.debian.org/debian/ stretch/main libsane amd64 1.0.25-4.1 [2113 kB] Get:408 http://deb.debian.org/debian/ stretch/main libsane-common all 1.0.25-4.1 [1012 kB] Get:409 http://deb.debian.org/debian/ stretch/main mira-rfam-12s-rrna all 4.9.6-2 [10.4 MB] Get:410 http://deb.debian.org/debian/ stretch/main libjs-jquery-metadata all 11-3 [7188 B] Get:411 http://deb.debian.org/debian/ stretch/main libjs-jquery-tablesorter all 11-3 [43.9 kB] Get:412 http://deb.debian.org/debian/ stretch/main libjs-twitter-bootstrap all 2.0.2+dfsg-10 [98.8 kB] Get:413 http://deb.debian.org/debian/ stretch/main libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-1 [31.5 kB] Get:414 http://deb.debian.org/debian/ stretch/main libassuan0 amd64 2.4.3-2 [42.5 kB] Get:415 http://deb.debian.org/debian/ stretch/main pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:416 http://deb.debian.org/debian/ stretch/main libnpth0 amd64 1.3-1 [14.6 kB] Get:417 http://deb.debian.org/debian/ stretch/main gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:418 http://deb.debian.org/debian/ stretch/main libksba8 amd64 1.3.5-2 [99.7 kB] Get:419 http://deb.debian.org/debian/ stretch/main gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:420 http://deb.debian.org/debian/ stretch/main tzdata all 2020a-0+deb9u1 [278 kB] Get:421 http://deb.debian.org/debian/ stretch/main libisc-export160 amd64 1:9.10.3.dfsg.P4-12.3+deb9u6 [335 kB] Get:422 http://deb.debian.org/debian/ stretch/main libdns-export162 amd64 1:9.10.3.dfsg.P4-12.3+deb9u6 [852 kB] Get:423 http://deb.debian.org/debian/ stretch/main isc-dhcp-client amd64 4.3.5-3+deb9u1 [325 kB] Get:424 http://deb.debian.org/debian/ stretch/main isc-dhcp-common amd64 4.3.5-3+deb9u1 [136 kB] Get:425 http://deb.debian.org/debian/ stretch/main file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:426 http://deb.debian.org/debian/ stretch/main libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:427 http://deb.debian.org/debian/ stretch/main libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:428 http://deb.debian.org/debian/ stretch/main openssh-client amd64 1:7.4p1-10+deb9u7 [780 kB] Get:429 http://deb.debian.org/debian/ stretch/main abyss amd64 2.0.2-2 [1388 kB] Get:430 http://deb.debian.org/debian/ stretch/main adapterremoval amd64 2.2.0-1 [202 kB] Get:431 http://deb.debian.org/debian/ stretch/main libjs-jquery-datatables all 1.10.13+dfsg-2 [135 kB] Get:432 http://deb.debian.org/debian/ stretch/main libjs-mootools all 1.4.5~debian1-2.1 [242 kB] Get:433 http://deb.debian.org/debian/ stretch/main aegean amd64 0.15.2+dfsg-1 [199 kB] Get:434 http://deb.debian.org/debian/ stretch/main aevol amd64 4.4-1+b4 [426 kB] Get:435 http://deb.debian.org/debian/ stretch/main alter-sequence-alignment amd64 1.3.3+dfsg-1 [223 kB] Get:436 http://deb.debian.org/debian/ stretch/main amap-align amd64 2.2-6 [129 kB] Get:437 http://deb.debian.org/debian/ stretch/main libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:438 http://deb.debian.org/debian/ stretch/main andi amd64 0.10-2 [466 kB] Get:439 http://deb.debian.org/debian/ stretch/main libprotobuf10 amd64 3.0.0-9 [681 kB] Get:440 http://deb.debian.org/debian/ stretch/main libanfo0 amd64 0.98-5 [272 kB] Get:441 http://deb.debian.org/debian/ stretch/main anfo amd64 0.98-5 [116 kB] Get:442 http://deb.debian.org/debian/ stretch/main python3-dendropy all 4.2.0+dfsg-1 [7494 kB] Get:443 http://deb.debian.org/debian/ stretch/main mummer amd64 3.23+dfsg-2 [809 kB] Get:444 http://deb.debian.org/debian/ stretch/main python3-pymummer all 0.10.1-1 [8872 B] Get:445 http://deb.debian.org/debian/ stretch/main libhts1 amd64 1.3.2-2 [257 kB] Get:446 http://deb.debian.org/debian/ stretch/main python3-pysam amd64 0.10.0+ds-2 [1299 kB] Get:447 http://deb.debian.org/debian/ stretch/main libfml0 amd64 0.1-2+b1 [68.7 kB] Get:448 http://deb.debian.org/debian/ stretch/main libminimap0 amd64 0.2-3+b1 [22.6 kB] Get:449 http://deb.debian.org/debian/ stretch/main libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:450 http://deb.debian.org/debian/ stretch/main libtbb2 amd64 4.3~20150611-2 [136 kB] Get:451 http://deb.debian.org/debian/ stretch/main bowtie2 amd64 2.3.0-2 [1166 kB] Get:452 http://deb.debian.org/debian/ stretch/main cd-hit amd64 4.6.6-2 [852 kB] Get:453 http://deb.debian.org/debian/ stretch/main libcapnp-0.5.3 amd64 0.5.3-2 [584 kB] Get:454 http://deb.debian.org/debian/ stretch/main mash amd64 1.1.1-2 [126 kB] Get:455 http://deb.debian.org/debian/ stretch/main ariba amd64 2.6.1+ds-1 [104 kB] Get:456 http://deb.debian.org/debian/ stretch/main art-nextgen-simulation-tools amd64 20160605+dfsg-2 [1757 kB] Get:457 http://deb.debian.org/debian/ stretch/main libhpdf-2.2.1 amd64 2.2.1-1.1+b1 [319 kB] Get:458 http://deb.debian.org/debian/ stretch/main emboss amd64 6.6.0+dfsg-6 [1058 kB] Get:459 http://deb.debian.org/debian/ stretch/main emboss-lib amd64 6.6.0+dfsg-6 [2773 kB] Get:460 http://deb.debian.org/debian/ stretch/main emboss-data all 6.6.0+dfsg-6 [61.1 MB] Get:461 http://deb.debian.org/debian/ stretch/main jemboss all 6.6.0+dfsg-6 [3796 kB] Get:462 http://deb.debian.org/debian/ stretch/main libbsf-java all 1:2.4.0-5 [72.2 kB] Get:463 http://deb.debian.org/debian/ stretch/main libjaxp1.3-java all 1.3.05-2 [450 kB] Get:464 http://deb.debian.org/debian/ stretch/main libxalan2-java all 2.7.1-9 [3169 kB] Get:465 http://deb.debian.org/debian/ stretch/main libxmlgraphics-commons-java all 2.1-2 [590 kB] Get:466 http://deb.debian.org/debian/ stretch/main libbatik-java all 1.8-4+deb9u2 [2893 kB] Get:467 http://deb.debian.org/debian/ stretch/main libcommons-lang3-java all 3.5-1 [437 kB] Get:468 http://deb.debian.org/debian/ stretch/main libngs-sdk1 amd64 1.3.0-2 [51.2 kB] Get:469 http://deb.debian.org/debian/ stretch/main libngs-sdk-dev amd64 1.3.0-2 [92.4 kB] Get:470 http://deb.debian.org/debian/ stretch/main libngs-java amd64 1.3.0-2 [71.1 kB] Get:471 http://deb.debian.org/debian/ stretch/main libsnappy1v5 amd64 1.1.3-3 [51.0 kB] Get:472 http://deb.debian.org/debian/ stretch/main libsnappy-jni amd64 1.1.2.6-1 [6808 B] Get:473 http://deb.debian.org/debian/ stretch/main libsnappy-java all 1.1.2.6-1 [65.9 kB] Get:474 http://deb.debian.org/debian/ stretch/main libxz-java all 1.6-1 [128 kB] Get:475 http://deb.debian.org/debian/ stretch/main libhtsjdk-java all 2.8.1+dfsg-1 [1438 kB] Get:476 http://deb.debian.org/debian/ stretch/main libibatis-java all 2.3.4.726-6 [339 kB] Get:477 http://deb.debian.org/debian/ stretch/main libj2ssh-java all 0.2.9-4 [740 kB] Get:478 http://deb.debian.org/debian/ stretch/main picard-tools all 2.8.1+dfsg-1 [7788 B] Get:479 http://deb.debian.org/debian/ stretch/main libatinject-jsr330-api-java all 1.0+ds1-2 [22.7 kB] Get:480 http://deb.debian.org/debian/ stretch/main libjsr305-java all 0.1~+svn49-10 [26.5 kB] Get:481 http://deb.debian.org/debian/ stretch/main libguava-java all 19.0-1 [2028 kB] Get:482 http://deb.debian.org/debian/ stretch/main libpicard-java all 2.8.1+dfsg-1 [1190 kB] Get:483 http://deb.debian.org/debian/ stretch/main libpostgresql-jdbc-java all 9.4.1212-1 [629 kB] Get:484 http://deb.debian.org/debian/ stretch/main artemis all 16.0.17+dfsg-1 [2622 kB] Get:485 http://deb.debian.org/debian/ stretch/main artfastqgenerator all 0.0.20150519-2 [40.2 kB] Get:486 http://deb.debian.org/debian/ stretch/main at-spi2-core amd64 2.22.0-6+deb9u1 [69.3 kB] Get:487 http://deb.debian.org/debian/ stretch/main leaff amd64 0~20150903+r2013-3 [71.3 kB] Get:488 http://deb.debian.org/debian/ stretch/main meryl amd64 0~20150903+r2013-3 [194 kB] Get:489 http://deb.debian.org/debian/ stretch/main atac amd64 0~20150903+r2013-3 [383 kB] Get:490 http://deb.debian.org/debian/ stretch/main libbamtools2.4.0 amd64 2.4.1+dfsg-1 [190 kB] Get:491 http://deb.debian.org/debian/ stretch/main augustus-data all 3.2.3+dfsg-1 [14.9 MB] Get:492 http://deb.debian.org/debian/ stretch/main augustus amd64 3.2.3+dfsg-1 [1110 kB] Get:493 http://deb.debian.org/debian/ stretch/main m4 amd64 1.4.18-1 [202 kB] Get:494 http://deb.debian.org/debian/ stretch/main autoconf all 2.69-10 [338 kB] Get:495 http://deb.debian.org/debian/ stretch/main autodock amd64 4.2.6-3+b1 [160 kB] Get:496 http://deb.debian.org/debian/ stretch/main autogrid amd64 4.2.6-3+b1 [48.3 kB] Get:497 http://deb.debian.org/debian/ stretch/main automake all 1:1.15-6 [733 kB] Get:498 http://deb.debian.org/debian/ stretch/main libqes0 amd64 0.2.7-1 [15.0 kB] Get:499 http://deb.debian.org/debian/ stretch/main axe-demultiplexer amd64 0.3.2+dfsg1-1 [213 kB] Get:500 http://deb.debian.org/debian/ stretch/main ballview amd64 1.4.3~beta1-3 [2518 kB] Get:501 http://deb.debian.org/debian/ stretch/main libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:502 http://deb.debian.org/debian/ stretch/main bamtools amd64 2.4.1+dfsg-1 [214 kB] Get:503 http://deb.debian.org/debian/ stretch/main hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:504 http://deb.debian.org/debian/ stretch/main barrnap all 0.7+dfsg-2 [192 kB] Get:505 http://deb.debian.org/debian/ stretch/main bc amd64 1.06.95-9+b3 [105 kB] Get:506 http://deb.debian.org/debian/ stretch/main samtools amd64 1.3.1-3 [254 kB] Get:507 http://deb.debian.org/debian/ stretch/main bcftools amd64 1.3.1-1+b1 [335 kB] Get:508 http://deb.debian.org/debian/ stretch/main beagle all 4.1~160727-86a+dfsg-1 [361 kB] Get:509 http://deb.debian.org/debian/ stretch/main libhmsbeagle-java amd64 2.1.2+20160831-5 [24.2 kB] Get:510 http://deb.debian.org/debian/ stretch/main libconcurrent-java all 1.3.4-4 [133 kB] Get:511 http://deb.debian.org/debian/ stretch/main libcolt-free-java all 1.2.0+dfsg-4 [405 kB] Get:512 http://deb.debian.org/debian/ stretch/main libcommons-math-java all 2.2-6 [892 kB] Get:513 http://deb.debian.org/debian/ stretch/main libitext1-java all 1.4-6 [1194 kB] Get:514 http://deb.debian.org/debian/ stretch/main libmpj-java all 0.44+dfsg-3 [439 kB] Get:515 http://deb.debian.org/debian/ stretch/main libmtj-java all 0.9.14+dfsg-4 [126 kB] Get:516 http://deb.debian.org/debian/ stretch/main libnucleotidelikelihoodcore0 amd64 1.8.4+dfsg.1-1 [8460 B] Get:517 http://deb.debian.org/debian/ stretch/main f2j amd64 0.8.1+dfsg-2 [160 kB] Get:518 http://deb.debian.org/debian/ stretch/main libf2j-java all 0.8.1+dfsg-2 [59.0 kB] Get:519 http://deb.debian.org/debian/ stretch/main libjlapack-java all 0.8~dfsg-3 [925 kB] Get:520 http://deb.debian.org/debian/ stretch/main libnetlib-java all 0.9.3-3 [192 kB] Get:521 http://deb.debian.org/debian/ stretch/main beast-mcmc all 1.8.4+dfsg.1-1 [7151 kB] Get:522 http://deb.debian.org/debian/ stretch/main beast2-mcmc all 2.4.4+dfsg-1 [1590 kB] Get:523 http://deb.debian.org/debian/ stretch/main bedtools amd64 2.26.0+dfsg-3 [584 kB] Get:524 http://deb.debian.org/debian/ stretch/main berkeley-express amd64 1.5.1-3+b1 [234 kB] Get:525 http://deb.debian.org/debian/ stretch/main bio-eagle amd64 2.3-3 [219 kB] Get:526 http://deb.debian.org/debian/ stretch/main bio-rainbow amd64 2.0.4-1+b1 [48.3 kB] Get:527 http://deb.debian.org/debian/ stretch/main libservlet3.1-java all 8.5.54-0+deb9u1 [403 kB] Get:528 http://deb.debian.org/debian/ stretch/main libhsqldb-java all 2.3.4-1 [1502 kB] Get:529 http://deb.debian.org/debian/ stretch/main biomaj all 1.2.3-11 [4279 kB] Get:530 http://deb.debian.org/debian/ stretch/main libjgoodies-forms-java all 1.9.0-3 [133 kB] Get:531 http://deb.debian.org/debian/ stretch/main libsaxonhe-java all 9.5.1.1+dfsg-2 [2908 kB] Get:532 http://deb.debian.org/debian/ stretch/main bioperl-run all 1.7.1-3 [44.2 kB] Get:533 http://deb.debian.org/debian/ stretch/main libbio-perl-run-perl all 1.7.1-3 [816 kB] Get:534 http://deb.debian.org/debian/ stretch/main libaec0 amd64 0.3.2-1 [18.5 kB] Get:535 http://deb.debian.org/debian/ stretch/main libsz2 amd64 0.3.2-1 [5730 B] Get:536 http://deb.debian.org/debian/ stretch/main libhdf5-100 amd64 1.10.0-patch1+docs-3+deb9u1 [1282 kB] Get:537 http://deb.debian.org/debian/ stretch/main libhdf5-cpp-100 amd64 1.10.0-patch1+docs-3+deb9u1 [130 kB] Get:538 http://deb.debian.org/debian/ stretch/main libpbbam amd64 0.7.4+ds-1 [478 kB] Get:539 http://deb.debian.org/debian/ stretch/main libpbdata amd64 0~20161219-1 [129 kB] Get:540 http://deb.debian.org/debian/ stretch/main libpbihdf amd64 0~20161219-1 [167 kB] Get:541 http://deb.debian.org/debian/ stretch/main libblasr amd64 0~20161219-1 [867 kB] Get:542 http://deb.debian.org/debian/ stretch/main libpbseq all 0~20161219-1 [3876 B] Get:543 http://deb.debian.org/debian/ stretch/main blasr amd64 5.3+0-1 [691 kB] Get:544 http://deb.debian.org/debian/ stretch/main libjargs-java all 1.0.0-4 [15.3 kB] Get:545 http://deb.debian.org/debian/ stretch/main cgview amd64 0.0.20100111-2 [586 kB] Get:546 http://deb.debian.org/debian/ stretch/main libswing-layout-java all 1.0.4-4 [51.3 kB] Get:547 http://deb.debian.org/debian/ stretch/main brig amd64 0.95+dfsg-1 [105 kB] Get:548 http://deb.debian.org/debian/ stretch/main libisl15 amd64 0.18-1 [564 kB] Get:549 http://deb.debian.org/debian/ stretch/main cpp-6 amd64 6.3.0-18+deb9u1 [6584 kB] Get:550 http://deb.debian.org/debian/ stretch/main cpp amd64 4:6.3.0-4 [18.7 kB] Get:551 http://deb.debian.org/debian/ stretch/main libcc1-0 amd64 6.3.0-18+deb9u1 [30.6 kB] Get:552 http://deb.debian.org/debian/ stretch/main libitm1 amd64 6.3.0-18+deb9u1 [27.3 kB] Get:553 http://deb.debian.org/debian/ stretch/main libasan3 amd64 6.3.0-18+deb9u1 [311 kB] Get:554 http://deb.debian.org/debian/ stretch/main liblsan0 amd64 6.3.0-18+deb9u1 [115 kB] Get:555 http://deb.debian.org/debian/ stretch/main libtsan0 amd64 6.3.0-18+deb9u1 [257 kB] Get:556 http://deb.debian.org/debian/ stretch/main libubsan0 amd64 6.3.0-18+deb9u1 [107 kB] Get:557 http://deb.debian.org/debian/ stretch/main libcilkrts5 amd64 6.3.0-18+deb9u1 [40.5 kB] Get:558 http://deb.debian.org/debian/ stretch/main libmpx2 amd64 6.3.0-18+deb9u1 [11.2 kB] Get:559 http://deb.debian.org/debian/ stretch/main libgcc-6-dev amd64 6.3.0-18+deb9u1 [2296 kB] Get:560 http://deb.debian.org/debian/ stretch/main gcc-6 amd64 6.3.0-18+deb9u1 [6900 kB] Get:561 http://deb.debian.org/debian/ stretch/main gcc amd64 4:6.3.0-4 [5196 B] Get:562 http://deb.debian.org/debian/ stretch/main libstdc++-6-dev amd64 6.3.0-18+deb9u1 [1420 kB] Get:563 http://deb.debian.org/debian/ stretch/main g++-6 amd64 6.3.0-18+deb9u1 [7094 kB] Get:564 http://deb.debian.org/debian/ stretch/main g++ amd64 4:6.3.0-4 [1546 B] Get:565 http://deb.debian.org/debian/ stretch/main build-essential amd64 12.3 [7346 B] Get:566 http://deb.debian.org/debian/ stretch/main cdbfasta amd64 0.99-20100722-3 [55.5 kB] Get:567 http://deb.debian.org/debian/ stretch/main python3-jdcal all 1.0-1.2~deb9u1 [7566 B] Get:568 http://deb.debian.org/debian/ stretch/main python3-lxml amd64 3.7.1-1 [900 kB] Get:569 http://deb.debian.org/debian/ stretch/main python3-openpyxl all 2.3.0-3 [198 kB] Get:570 http://deb.debian.org/debian/ stretch/main libhat-trie0 amd64 0.0~git25f9e946-2 [10.7 kB] Get:571 http://deb.debian.org/debian/ stretch/main libnlopt0 amd64 2.4.2+dfsg-2+b2 [162 kB] Get:572 http://deb.debian.org/debian/ stretch/main libssw0 amd64 1.1-1+b1 [16.5 kB] Get:573 http://deb.debian.org/debian/ stretch/main python-joblib all 0.10.3+git55-g660fe5d-1 [115 kB] Get:574 http://deb.debian.org/debian/ stretch/main spades amd64 3.9.1+dfsg-1 [3450 kB] Get:575 http://deb.debian.org/debian/ stretch/main circlator all 1.4.1-1 [4325 kB] Get:576 http://deb.debian.org/debian/ stretch/main clustalw amd64 2.1+lgpl-5 [286 kB] Get:577 http://deb.debian.org/debian/ stretch/main codonw amd64 1.4.4-3+b1 [90.9 kB] Get:578 http://deb.debian.org/debian/ stretch/main colord amd64 1.3.3-2 [338 kB] Get:579 http://deb.debian.org/debian/ stretch/main libgkarrays1 amd64 2.1.0+dfsg-1 [55.0 kB] Get:580 http://deb.debian.org/debian/ stretch/main libgzstream0 amd64 1.5+dfsg-2 [6258 B] Get:581 http://deb.debian.org/debian/ stretch/main jellyfish amd64 2.2.6-1+b1 [349 kB] Get:582 http://deb.debian.org/debian/ stretch/main libjellyfish-2.0-2 amd64 2.2.6-1+b1 [62.2 kB] Get:583 http://deb.debian.org/debian/ stretch/main crac amd64 2.5.0+dfsg-1 [254 kB] Get:584 http://deb.debian.org/debian/ stretch/main curl amd64 7.52.1-5+deb9u10 [227 kB] Get:585 http://deb.debian.org/debian/ stretch/main libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:586 http://deb.debian.org/debian/ stretch/main python3-xopen all 0.1.1-1 [6072 B] Get:587 http://deb.debian.org/debian/ stretch/main python3-cutadapt amd64 1.12-2 [106 kB] Get:588 http://deb.debian.org/debian/ stretch/main cutadapt all 1.12-2 [7448 B] Get:589 http://deb.debian.org/debian/ stretch/main daligner amd64 1.0+20161119-1 [170 kB] Get:590 http://deb.debian.org/debian/ stretch/main dascrubber amd64 0~20160601-2 [81.6 kB] Get:591 http://deb.debian.org/debian/ stretch/main dawg amd64 1.2-1+b1 [76.9 kB] Get:592 http://deb.debian.org/debian/ stretch/main dazzdb amd64 1.0+20161112-2 [150 kB] Get:593 http://deb.debian.org/debian/ stretch/main libmatthew-debug-java all 0.8-1 [13.4 kB] Get:594 http://deb.debian.org/debian/ stretch/main libunixsocket-java amd64 0.8-1 [15.7 kB] Get:595 http://deb.debian.org/debian/ stretch/main libdbus-java all 2.8-6 [150 kB] Get:596 http://deb.debian.org/debian/ stretch/main dbus-java-bin all 2.8-6 [74.5 kB] Get:597 http://deb.debian.org/debian/ stretch/main libtool all 2.4.6-2 [545 kB] Get:598 http://deb.debian.org/debian/ stretch/main dh-autoreconf all 14 [15.9 kB] Get:599 http://deb.debian.org/debian/ stretch/main libarchive-zip-perl all 1.59-1+deb9u1 [96.2 kB] Get:600 http://deb.debian.org/debian/ stretch/main libfile-stripnondeterminism-perl all 0.034-1 [16.4 kB] Get:601 http://deb.debian.org/debian/ stretch/main dh-strip-nondeterminism all 0.034-1 [10.5 kB] Get:602 http://deb.debian.org/debian/ stretch/main debhelper all 10.2.5 [961 kB] Get:603 http://deb.debian.org/debian/ stretch/main dindel amd64 1.01+dfsg-4+b1 [333 kB] Get:604 http://deb.debian.org/debian/ stretch/main dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:605 http://deb.debian.org/debian/ stretch/main discosnp amd64 1.2.6-1+b2 [143 kB] Get:606 http://deb.debian.org/debian/ stretch/main dnaclust amd64 3-4+b2 [85.9 kB] Get:607 http://deb.debian.org/debian/ stretch/main dssp amd64 2.2.1-3+b2 [265 kB] Get:608 http://deb.debian.org/debian/ stretch/main dvipng amd64 1.14-2+b3 [86.5 kB] Get:609 http://deb.debian.org/debian/ stretch/main dwgsim amd64 0.1.11-3+b1 [38.1 kB] Get:610 http://deb.debian.org/debian/ stretch/main r-base-core amd64 3.3.3-1 [21.2 MB] Get:611 http://deb.debian.org/debian/ stretch/main r-cran-getopt amd64 1.20.0-2 [24.4 kB] Get:612 http://deb.debian.org/debian/ stretch/main r-cran-chron amd64 2.3-49-1 [104 kB] Get:613 http://deb.debian.org/debian/ stretch/main r-cran-lattice amd64 0.20-34-1 [713 kB] Get:614 http://deb.debian.org/debian/ stretch/main r-cran-cluster amd64 2.0.5-1 [490 kB] Get:615 http://deb.debian.org/debian/ stretch/main r-cran-matrix amd64 1.2-7.1-1 [2311 kB] Get:616 http://deb.debian.org/debian/ stretch/main r-cran-survival amd64 2.40-1-1 [4863 kB] Get:617 http://deb.debian.org/debian/ stretch/main r-cran-formula all 1.2-1-1 [162 kB] Get:618 http://deb.debian.org/debian/ stretch/main r-cran-rpart amd64 4.1-10-2 [861 kB] Get:619 http://deb.debian.org/debian/ stretch/main r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB] Get:620 http://deb.debian.org/debian/ stretch/main r-cran-latticeextra amd64 0.6-28-2 [2059 kB] Get:621 http://deb.debian.org/debian/ stretch/main r-cran-acepack amd64 1.4.1-1 [52.5 kB] Get:622 http://deb.debian.org/debian/ stretch/main r-cran-digest amd64 0.6.11-1 [112 kB] Get:623 http://deb.debian.org/debian/ stretch/main r-cran-gtable all 0.2.0-1 [65.1 kB] Get:624 http://deb.debian.org/debian/ stretch/main r-cran-mass amd64 7.3-45-1 [1017 kB] Get:625 http://deb.debian.org/debian/ stretch/main littler all 0.3.1-1 [11.7 kB] Get:626 http://deb.debian.org/debian/ stretch/main r-cran-littler amd64 0.3.1-1 [59.1 kB] Get:627 http://deb.debian.org/debian/ stretch/main r-cran-pkgkitten all 0.1.4-1 [18.7 kB] Get:628 http://deb.debian.org/debian/ stretch/main r-cran-rcpp amd64 0.12.9-1 [2168 kB] Get:629 http://deb.debian.org/debian/ stretch/main r-cran-plyr amd64 1.8.4-1 [727 kB] Get:630 http://deb.debian.org/debian/ stretch/main r-cran-stringi amd64 1.1.2-1 [606 kB] Get:631 http://deb.debian.org/debian/ stretch/main r-cran-magrittr amd64 1.5-3 [147 kB] Get:632 http://deb.debian.org/debian/ stretch/main r-cran-stringr all 1.1.0-1 [117 kB] Get:633 http://deb.debian.org/debian/ stretch/main r-cran-reshape2 amd64 1.4.2-1 [87.5 kB] Get:634 http://deb.debian.org/debian/ stretch/main r-cran-colorspace amd64 1.3-2-1 [388 kB] Get:635 http://deb.debian.org/debian/ stretch/main r-cran-munsell all 0.4.3-1 [127 kB] Get:636 http://deb.debian.org/debian/ stretch/main r-cran-scales amd64 0.4.1-1 [200 kB] Get:637 http://deb.debian.org/debian/ stretch/main r-cran-assertthat all 0.1-1 [43.3 kB] Get:638 http://deb.debian.org/debian/ stretch/main r-cran-lazyeval amd64 0.2.0-1 [112 kB] Get:639 http://deb.debian.org/debian/ stretch/main r-cran-tibble amd64 1.2-1 [121 kB] Get:640 http://deb.debian.org/debian/ stretch/main r-cran-ggplot2 all 2.2.1-2 [2658 kB] Get:641 http://deb.debian.org/debian/ stretch/main r-cran-gridextra all 2.2.1-1 [451 kB] Get:642 http://deb.debian.org/debian/ stretch/main r-cran-data.table amd64 1.10.0-1 [1070 kB] Get:643 http://deb.debian.org/debian/ stretch/main r-cran-htmltools amd64 0.3.5-2 [115 kB] Get:644 http://deb.debian.org/debian/ stretch/main r-cran-evaluate all 0.10-1 [51.5 kB] Get:645 http://deb.debian.org/debian/ stretch/main libjs-highlight.js all 8.2+ds-5 [165 kB] Get:646 http://deb.debian.org/debian/ stretch/main r-cran-highr all 0.6-1 [30.1 kB] Get:647 http://deb.debian.org/debian/ stretch/main fonts-mathjax all 2.7.0-2 [960 kB] Get:648 http://deb.debian.org/debian/ stretch/main libjs-mathjax all 2.7.0-2 [5603 kB] Get:649 http://deb.debian.org/debian/ stretch/main r-cran-mime amd64 0.5-1 [25.5 kB] Get:650 http://deb.debian.org/debian/ stretch/main r-cran-markdown amd64 0.7.7-1 [95.2 kB] Get:651 http://deb.debian.org/debian/ stretch/main r-cran-yaml amd64 2.1.14-1 [79.4 kB] Get:652 http://deb.debian.org/debian/ stretch/main r-cran-knitr amd64 1.15.1-1 [784 kB] Get:653 http://deb.debian.org/debian/ stretch/main r-cran-viridis all 0.3.4-1 [1723 kB] Get:654 http://deb.debian.org/debian/ stretch/main r-cran-htmltable all 1.7-2 [153 kB] Get:655 http://deb.debian.org/debian/ stretch/main r-cran-base64enc amd64 0.1-3-1 [23.4 kB] Get:656 http://deb.debian.org/debian/ stretch/main r-cran-hmisc amd64 4.0-2-1 [1745 kB] Get:657 http://deb.debian.org/debian/ stretch/main ea-utils amd64 1.1.2+dfsg-4 [229 kB] Get:658 http://deb.debian.org/debian/ stretch/main python3-reportlab-accel amd64 3.3.0-2+deb9u1 [32.1 kB] Get:659 http://deb.debian.org/debian/ stretch/main python3-reportlab all 3.3.0-2+deb9u1 [474 kB] Get:660 http://deb.debian.org/debian/ stretch/main ecopcr amd64 0.5.0+dfsg-1 [52.5 kB] Get:661 http://deb.debian.org/debian/ stretch/main libtmglib3 amd64 3.7.0-2 [130 kB] Get:662 http://deb.debian.org/debian/ stretch/main liblapacke amd64 3.7.0-2 [360 kB] Get:663 http://deb.debian.org/debian/ stretch/main eigensoft amd64 6.1.4+dfsg-1+b1 [341 kB] Get:664 http://deb.debian.org/debian/ stretch/main exim4-config all 4.89-2+deb9u7 [377 kB] Get:665 http://deb.debian.org/debian/ stretch/main exim4-base amd64 4.89-2+deb9u7 [1094 kB] Get:666 http://deb.debian.org/debian/ stretch/main exim4-daemon-light amd64 4.89-2+deb9u7 [542 kB] Get:667 http://deb.debian.org/debian/ stretch/main exim4 all 4.89-2+deb9u7 [7860 B] Get:668 http://deb.debian.org/debian/ stretch/main python-networkx all 1.11-2 [822 kB] Get:669 http://deb.debian.org/debian/ stretch/main time amd64 1.7-25.1+b1 [31.6 kB] Get:670 http://deb.debian.org/debian/ stretch/main falcon amd64 1.8.6-1.1 [510 kB] Get:671 http://deb.debian.org/debian/ stretch/main libdisorder0 amd64 0.0.2-1 [3962 B] Get:672 http://deb.debian.org/debian/ stretch/main libfastahack0 amd64 0.0+20160702-1+b1 [22.1 kB] Get:673 http://deb.debian.org/debian/ stretch/main fastahack amd64 0.0+20160702-1+b1 [10.4 kB] Get:674 http://deb.debian.org/debian/ stretch/main fastml amd64 3.1-3 [991 kB] Get:675 http://deb.debian.org/debian/ stretch/main fastqc all 0.11.5+dfsg-6 [375 kB] Get:676 http://deb.debian.org/debian/ stretch/main r-mathlib amd64 3.3.3-1 [1567 kB] Get:677 http://deb.debian.org/debian/ stretch/main fastqtl amd64 2.184+dfsg-5 [200 kB] Get:678 http://deb.debian.org/debian/ stretch/main figtree all 1.4.2+dfsg-2 [948 kB] Get:679 http://deb.debian.org/debian/ stretch/main filo amd64 1.1.0-3+b1 [46.3 kB] Get:680 http://deb.debian.org/debian/ stretch/main flexbar amd64 2.50-2+b1 [257 kB] Get:681 http://deb.debian.org/debian/ stretch/main fml-asm amd64 0.1-2+b1 [66.8 kB] Get:682 http://deb.debian.org/debian/ stretch/main fonts-noto-mono all 20161116-1 [79.2 kB] Get:683 http://deb.debian.org/debian/ stretch/main libavalon-framework-java all 4.2.0-9 [70.6 kB] Get:684 http://deb.debian.org/debian/ stretch/main libfontbox-java all 1:1.8.12-1 [205 kB] Get:685 http://deb.debian.org/debian/ stretch/main libfop-java all 1:2.1-6 [9459 kB] Get:686 http://deb.debian.org/debian/ stretch/main fop all 1:2.1-6 [22.9 kB] Get:687 http://deb.debian.org/debian/ stretch/main fsa amd64 1.15.9+dfsg-3 [753 kB] Get:688 http://deb.debian.org/debian/ stretch/main libsdsl3 amd64 2.0.3-4 [194 kB] Get:689 http://deb.debian.org/debian/ stretch/main fsm-lite amd64 1.0-2 [86.4 kB] Get:690 http://deb.debian.org/debian/ stretch/main libncl1 amd64 2.1.18+dfsg-2+b1 [355 kB] Get:691 http://deb.debian.org/debian/ stretch/main garli amd64 2.1-1 [571 kB] Get:692 http://deb.debian.org/debian/ stretch/main libbio-coordinate-perl all 1.7.1-1 [56.0 kB] Get:693 http://deb.debian.org/debian/ stretch/main gbrowse all 2.56+dfsg-2 [2373 kB] Get:694 http://deb.debian.org/debian/ stretch/main libgfortran-6-dev amd64 6.3.0-18+deb9u1 [299 kB] Get:695 http://deb.debian.org/debian/ stretch/main gfortran-6 amd64 6.3.0-18+deb9u1 [6916 kB] Get:696 http://deb.debian.org/debian/ stretch/main gfortran amd64 4:6.3.0-4 [1356 B] Get:697 http://deb.debian.org/debian/ stretch/main libsc-data all 2.3.1-18+deb9u1 [119 kB] Get:698 http://deb.debian.org/debian/ stretch/main libint1 amd64 1.1.6-2+b1 [2705 kB] Get:699 http://deb.debian.org/debian/ stretch/main libsc7v5 amd64 2.3.1-18+deb9u1 [2320 kB] Get:700 http://deb.debian.org/debian/ stretch/main mpqc amd64 2.3.1-18+deb9u1 [90.1 kB] Get:701 http://deb.debian.org/debian/ stretch/main libmopac7-1gf amd64 1.15-6+b1 [476 kB] Get:702 http://deb.debian.org/debian/ stretch/main libghemical-data all 3.0.0-4.1 [109 kB] Get:703 http://deb.debian.org/debian/ stretch/main libghemical5v5 amd64 3.0.0-4.1+b3 [374 kB] Get:704 http://deb.debian.org/debian/ stretch/main liboglappth2 amd64 1.0.0-2 [34.0 kB] Get:705 http://deb.debian.org/debian/ stretch/main libopenbabel4v5 amd64 2.3.2+dfsg-3 [2848 kB] Get:706 http://deb.debian.org/debian/ stretch/main ghemical amd64 3.0.0-2 [1819 kB] Get:707 http://deb.debian.org/debian/ stretch/main libsuitesparseconfig4 amd64 1:4.5.4-1 [18.8 kB] Get:708 http://deb.debian.org/debian/ stretch/main libamd2 amd64 1:4.5.4-1 [36.3 kB] Get:709 http://deb.debian.org/debian/ stretch/main libcolamd2 amd64 1:4.5.4-1 [28.5 kB] Get:710 http://deb.debian.org/debian/ stretch/main libglpk40 amd64 4.61-1 [396 kB] Get:711 http://deb.debian.org/debian/ stretch/main glpk-utils amd64 4.61-1 [151 kB] Get:712 http://deb.debian.org/debian/ stretch/main gnustep-dl2-postgresql-adaptor amd64 0.12.0-15.1 [137 kB] Get:713 http://deb.debian.org/debian/ stretch/main ttf-bitstream-vera all 1.10-8 [352 kB] Get:714 http://deb.debian.org/debian/ stretch/main python-matplotlib-data all 2.0.0+dfsg1-2 [4414 kB] Get:715 http://deb.debian.org/debian/ stretch/main python-cycler all 0.10.0-1 [7448 B] Get:716 http://deb.debian.org/debian/ stretch/main python-functools32 all 3.2.3.2-3 [11.0 kB] Get:717 http://deb.debian.org/debian/ stretch/main python-subprocess32 amd64 3.2.7-2 [28.9 kB] Get:718 http://deb.debian.org/debian/ stretch/main python-matplotlib amd64 2.0.0+dfsg1-2 [1598 kB] Get:719 http://deb.debian.org/debian/ stretch/main graphlan all 1.1-2 [2463 kB] Get:720 http://deb.debian.org/debian/ stretch/main libann0 amd64 1.1.2+doc-6 [24.9 kB] Get:721 http://deb.debian.org/debian/ stretch/main libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:722 http://deb.debian.org/debian/ stretch/main libgvc6 amd64 2.38.0-17 [639 kB] Get:723 http://deb.debian.org/debian/ stretch/main graphviz amd64 2.38.0-17 [802 kB] Get:724 http://deb.debian.org/debian/ stretch/main python3-numpy amd64 1:1.12.1-3 [1934 kB] Get:725 http://deb.debian.org/debian/ stretch/main python3-biopython amd64 1.68+dfsg-3 [1163 kB] Get:726 http://deb.debian.org/debian/ stretch/main gubbins amd64 2.2.0-1 [53.1 kB] Get:727 http://deb.debian.org/debian/ stretch/main guile-2.0-libs amd64 2.0.13+1-4 [2232 kB] Get:728 http://deb.debian.org/debian/ stretch/main gwama amd64 2.2.2+dfsg-1 [82.3 kB] Get:729 http://deb.debian.org/debian/ stretch/main harvest-tools amd64 1.3-1 [134 kB] Get:730 http://deb.debian.org/debian/ stretch/main hdf5-tools amd64 1.10.0-patch1+docs-3+deb9u1 [405 kB] Get:731 http://deb.debian.org/debian/ stretch/main hilive amd64 0.3-2 [291 kB] Get:732 http://deb.debian.org/debian/ stretch/main hisat2 amd64 2.0.5-1 [1245 kB] Get:733 http://deb.debian.org/debian/ stretch/main hyphy-common all 2.2.7+dfsg-1 [619 kB] Get:734 http://deb.debian.org/debian/ stretch/main hyphy-mpi amd64 2.2.7+dfsg-1+b2 [920 kB] Get:735 http://deb.debian.org/debian/ stretch/main hyphygui amd64 2.2.7+dfsg-1+b2 [1487 kB] Get:736 http://deb.debian.org/debian/ stretch/main icc-profiles-free all 2.0.1+dfsg-1 [552 kB] Get:737 http://deb.debian.org/debian/ stretch/main icu-devtools amd64 57.1-6+deb9u4 [178 kB] Get:738 http://deb.debian.org/debian/ stretch/main idba amd64 1.1.3-1 [231 kB] Get:739 http://deb.debian.org/debian/ stretch/main imagemagick amd64 8:6.9.7.4+dfsg-11+deb9u8 [141 kB] Get:740 http://deb.debian.org/debian/ stretch/main imagemagick-6.q16 amd64 8:6.9.7.4+dfsg-11+deb9u8 [563 kB] Get:741 http://deb.debian.org/debian/ stretch/main indelible amd64 1.03-2+b1 [367 kB] Get:742 http://deb.debian.org/debian/ stretch/main python-ptyprocess all 0.5.1-1 [12.5 kB] Get:743 http://deb.debian.org/debian/ stretch/main python-pexpect all 4.2.1-1 [47.9 kB] Get:744 http://deb.debian.org/debian/ stretch/main python-pathlib2 all 2.2.0+really2.1.0-1 [16.5 kB] Get:745 http://deb.debian.org/debian/ stretch/main python-pickleshare all 0.7.4-1 [6736 B] Get:746 http://deb.debian.org/debian/ stretch/main python-wcwidth all 0.1.7+dfsg1-1 [14.6 kB] Get:747 http://deb.debian.org/debian/ stretch/main python-prompt-toolkit all 1.0.9-1 [174 kB] Get:748 http://deb.debian.org/debian/ stretch/main python-ipython-genutils all 0.1.0-2 [20.7 kB] Get:749 http://deb.debian.org/debian/ stretch/main python-enum34 all 1.1.6-1 [35.0 kB] Get:750 http://deb.debian.org/debian/ stretch/main python-traitlets all 4.3.1-1 [60.6 kB] Get:751 http://deb.debian.org/debian/ stretch/main python-backports-shutil-get-terminal-size all 1.0.0-3 [4656 B] Get:752 http://deb.debian.org/debian/ stretch/main ipython all 5.1.0-3 [5496 B] Get:753 http://deb.debian.org/debian/ stretch/main python-ipython all 5.1.0-3 [375 kB] Get:754 http://deb.debian.org/debian/ stretch/main iqtree amd64 1.5.3+dfsg-2 [2489 kB] Get:755 http://deb.debian.org/debian/ stretch/main python-sympy all 1.0-3 [2367 kB] Get:756 http://deb.debian.org/debian/ stretch/main isympy-common all 1.0-3 [189 kB] Get:757 http://deb.debian.org/debian/ stretch/main isympy all 1.0-3 [6828 B] Get:758 http://deb.debian.org/debian/ stretch/main python3-decorator all 4.0.11-1 [13.3 kB] Get:759 http://deb.debian.org/debian/ stretch/main python3-networkx all 1.11-2 [624 kB] Get:760 http://deb.debian.org/debian/ stretch/main kmc amd64 2.3+dfsg-5 [467 kB] Get:761 http://deb.debian.org/debian/ stretch/main iva amd64 1.0.8+ds-1 [8577 kB] Get:762 http://deb.debian.org/debian/ stretch/main jaligner all 1.0+dfsg-4 [128 kB] Get:763 http://deb.debian.org/debian/ stretch/main libpal-java all 1.5.1+dfsg-2 [656 kB] Get:764 http://deb.debian.org/debian/ stretch/main jmodeltest all 2.1.10+dfsg-5 [981 kB] Get:765 http://deb.debian.org/debian/ stretch/main libnaga-java all 3.0+svn80-1 [379 kB] Get:766 http://deb.debian.org/debian/ stretch/main libjmol-java all 14.6.4+2016.11.05+dfsg1-3 [6391 kB] Get:767 http://deb.debian.org/debian/ stretch/main jmol all 14.6.4+2016.11.05+dfsg1-3 [70.9 kB] Get:768 http://deb.debian.org/debian/ stretch/main python-alabaster all 0.7.8-1 [18.4 kB] Get:769 http://deb.debian.org/debian/ stretch/main python-babel-localedata all 2.3.4+dfsg.1-2 [3402 kB] Get:770 http://deb.debian.org/debian/ stretch/main python-babel all 2.3.4+dfsg.1-2 [82.5 kB] Get:771 http://deb.debian.org/debian/ stretch/main python-imagesize all 0.7.1-1 [3814 B] Get:772 http://deb.debian.org/debian/ stretch/main python-sphinx all 1.4.9-2 [434 kB] Get:773 http://deb.debian.org/debian/ stretch/main sphinx-common all 1.4.9-2 [350 kB] Get:774 http://deb.debian.org/debian/ stretch/main libjs-sphinxdoc all 1.4.9-2 [69.5 kB] Get:775 http://deb.debian.org/debian/ stretch/main khmer-common all 2.0+dfsg-10 [244 kB] Get:776 http://deb.debian.org/debian/ stretch/main python3-bz2file all 0.98-1 [7714 B] Get:777 http://deb.debian.org/debian/ stretch/main python3-screed all 0.9-2 [71.5 kB] Get:778 http://deb.debian.org/debian/ stretch/main khmer amd64 2.0+dfsg-10 [5980 kB] Get:779 http://deb.debian.org/debian/ stretch/main python-h5py amd64 2.7.0-1 [634 kB] Get:780 http://deb.debian.org/debian/ stretch/main python-avro all 1.8.1+dfsg-1 [58.1 kB] Get:781 http://deb.debian.org/debian/ stretch/main python-iso8601 all 0.1.11-1 [12.7 kB] Get:782 http://deb.debian.org/debian/ stretch/main python-urllib3 all 1.19.1-1 [77.5 kB] Get:783 http://deb.debian.org/debian/ stretch/main python-requests all 2.12.4-1 [101 kB] Get:784 http://deb.debian.org/debian/ stretch/main python-pbcommand all 0.5.3-1 [79.6 kB] Get:785 http://deb.debian.org/debian/ stretch/main python-pysam amd64 0.10.0+ds-2 [1301 kB] Get:786 http://deb.debian.org/debian/ stretch/main python-pbcore all 1.2.11+dfsg-1 [9087 kB] Get:787 http://deb.debian.org/debian/ stretch/main kineticstools-data all 0.6.1+20161222-1 [102 MB] Get:788 http://deb.debian.org/debian/ stretch/main python-kineticstools amd64 0.6.1+20161222-1 [49.3 kB] Get:789 http://deb.debian.org/debian/ stretch/main kineticstools all 0.6.1+20161222-1 [13.3 kB] Get:790 http://deb.debian.org/debian/ stretch/main king-probe amd64 2.13.110909-2 [86.5 kB] Get:791 http://deb.debian.org/debian/ stretch/main kissplice amd64 2.4.0-p1-1 [781 kB] Get:792 http://deb.debian.org/debian/ stretch/main sim4db amd64 0~20150903+r2013-3 [440 kB] Get:793 http://deb.debian.org/debian/ stretch/main kmer all 0~20150903+r2013-3 [4266 B] Get:794 http://deb.debian.org/debian/ stretch/main kraken amd64 0.10.5~beta-2+b1 [81.3 kB] Get:795 http://deb.debian.org/debian/ stretch/main lambda-align amd64 1.0.1-2 [1057 kB] Get:796 http://deb.debian.org/debian/ stretch/main libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:797 http://deb.debian.org/debian/ stretch/main sysstat amd64 11.4.3-2 [360 kB] Get:798 http://deb.debian.org/debian/ stretch/main parallel all 20161222-1 [307 kB] Get:799 http://deb.debian.org/debian/ stretch/main last-align amd64 830-1 [725 kB] Get:800 http://deb.debian.org/debian/ stretch/main lefse all 1.0+20160802-1 [44.6 kB] Get:801 http://deb.debian.org/debian/ stretch/main libmodule-load-conditional-perl all 0.68-1 [17.3 kB] Get:802 http://deb.debian.org/debian/ stretch/main libarchive-extract-perl all 0.80-1 [24.9 kB] Get:803 http://deb.debian.org/debian/ stretch/main libarchive13 amd64 3.2.2-2+deb9u2 [294 kB] Get:804 http://deb.debian.org/debian/ stretch/main libarpack2 amd64 3.4.0-1+b1 [96.1 kB] Get:805 http://deb.debian.org/debian/ stretch/main libsuperlu5 amd64 5.2.1+dfsg1-2 [160 kB] Get:806 http://deb.debian.org/debian/ stretch/main libarmadillo7 amd64 1:7.600.2+dfsg-2 [81.8 kB] Get:807 http://deb.debian.org/debian/ stretch/main libarray-utils-perl all 0.5-1 [6254 B] Get:808 http://deb.debian.org/debian/ stretch/main libasm-java all 5.2-2 [596 kB] Get:809 http://deb.debian.org/debian/ stretch/main libvariable-magic-perl amd64 0.61-1 [45.1 kB] Get:810 http://deb.debian.org/debian/ stretch/main libb-hooks-endofscope-perl all 0.21-1 [16.3 kB] Get:811 http://deb.debian.org/debian/ stretch/main libzstd1 amd64 1.1.2-1 [193 kB] Get:812 http://deb.debian.org/debian/ stretch/main libblosc1 amd64 1.11.1+ds2-1 [41.0 kB] Get:813 http://deb.debian.org/debian/ stretch/main libboost-atomic1.62.0 amd64 1.62.0+dfsg-4 [30.5 kB] Get:814 http://deb.debian.org/debian/ stretch/main libbpp-core2v5 amd64 2.2.0-3 [540 kB] Get:815 http://deb.debian.org/debian/ stretch/main libbpp-seq9v5 amd64 2.2.0-1+b1 [485 kB] Get:816 http://deb.debian.org/debian/ stretch/main libbpp-phyl9v5 amd64 2.2.0-1+b1 [1514 kB] Get:817 http://deb.debian.org/debian/ stretch/main libbpp-seq-omics1v5 amd64 2.2.0-1 [249 kB] Get:818 http://deb.debian.org/debian/ stretch/main libbpp-phyl-omics1v5 amd64 2.2.0-2 [67.6 kB] Get:819 http://deb.debian.org/debian/ stretch/main libcapture-tiny-perl all 0.44-1 [25.4 kB] Get:820 http://deb.debian.org/debian/ stretch/main libcfitsio5 amd64 3.410-1 [517 kB] Get:821 http://deb.debian.org/debian/ stretch/main libclass-data-inheritable-perl all 0.08-2 [9296 B] Get:822 http://deb.debian.org/debian/ stretch/main libpackage-stash-perl all 0.37-1 [20.8 kB] Get:823 http://deb.debian.org/debian/ stretch/main libclass-load-perl all 0.23-1 [15.9 kB] Get:824 http://deb.debian.org/debian/ stretch/main libclass-load-xs-perl amd64 0.09-2+b1 [14.4 kB] Get:825 http://deb.debian.org/debian/ stretch/main libclass-tiny-perl all 1.006-1 [18.8 kB] Get:826 http://deb.debian.org/debian/ stretch/main libcloog-isl4 amd64 0.18.4-1+b1 [64.0 kB] Get:827 http://deb.debian.org/debian/ stretch/main libcofoja-java all 1.3-1 [204 kB] Get:828 http://deb.debian.org/debian/ stretch/main libcommons-collections4-java all 4.1-1 [656 kB] Get:829 http://deb.debian.org/debian/ stretch/main libcommons-configuration-java all 1.10-4 [331 kB] Get:830 http://deb.debian.org/debian/ stretch/main libcpan-changes-perl all 0.400002-1 [34.7 kB] Get:831 http://deb.debian.org/debian/ stretch/main libcrypto++6 amd64 5.6.4-7 [829 kB] Get:832 http://deb.debian.org/debian/ stretch/main libcupsfilters1 amd64 1.11.6-3+deb9u1 [129 kB] Get:833 http://deb.debian.org/debian/ stretch/main libdata-perl-perl all 0.002009-1 [50.5 kB] Get:834 http://deb.debian.org/debian/ stretch/main libsub-identify-perl amd64 0.12-2+b1 [11.5 kB] Get:835 http://deb.debian.org/debian/ stretch/main libdevel-overloadinfo-perl all 0.004-1 [7270 B] Get:836 http://deb.debian.org/debian/ stretch/main libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:837 http://deb.debian.org/debian/ stretch/main libdevel-partialdump-perl all 0.18-2 [14.6 kB] Get:838 http://deb.debian.org/debian/ stretch/main libdevel-stacktrace-perl all 2.0200-1 [27.3 kB] Get:839 http://deb.debian.org/debian/ stretch/main libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:840 http://deb.debian.org/debian/ stretch/main libdjvulibre21 amd64 3.5.27.1-7 [568 kB] Get:841 http://deb.debian.org/debian/ stretch/main libdrm-amdgpu1 amd64 2.4.74-1 [26.4 kB] Get:842 http://deb.debian.org/debian/ stretch/main libemail-date-format-perl all 1.005-1 [7050 B] Get:843 http://deb.debian.org/debian/ stretch/main libenv-path-perl all 0.19-1 [22.0 kB] Get:844 http://deb.debian.org/debian/ stretch/main liberfa1 amd64 1.3.0-2 [115 kB] Get:845 http://deb.debian.org/debian/ stretch/main libeval-closure-perl all 0.14-1 [11.5 kB] Get:846 http://deb.debian.org/debian/ stretch/main libexception-class-perl all 1.42-1 [31.5 kB] Get:847 http://deb.debian.org/debian/ stretch/main libfastutil-java all 7.0.13-1 [14.4 MB] Get:848 http://deb.debian.org/debian/ stretch/main libfile-copy-link-perl all 0.140-2 [16.1 kB] Get:849 http://deb.debian.org/debian/ stretch/main libnumber-compare-perl all 0.03-1 [7642 B] Get:850 http://deb.debian.org/debian/ stretch/main libtext-glob-perl all 0.10-1 [8362 B] Get:851 http://deb.debian.org/debian/ stretch/main libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:852 http://deb.debian.org/debian/ stretch/main libfile-grep-perl all 0.02-1 [7654 B] Get:853 http://deb.debian.org/debian/ stretch/main libfile-slurp-perl all 9999.19-6 [43.2 kB] Get:854 http://deb.debian.org/debian/ stretch/main libfile-slurper-perl all 0.009-1 [7850 B] Get:855 http://deb.debian.org/debian/ stretch/main libfindbin-libs-perl all 2.150-1 [28.7 kB] Get:856 http://deb.debian.org/debian/ stretch/main libfltk-images1.3 amd64 1.3.4-4 [57.9 kB] Get:857 http://deb.debian.org/debian/ stretch/main libfltk1.3 amd64 1.3.4-4 [550 kB] Get:858 http://deb.debian.org/debian/ stretch/main libfribidi0 amd64 0.19.7-1+deb9u1 [45.6 kB] Get:859 http://deb.debian.org/debian/ stretch/main libftgl2 amd64 2.1.3~rc5-4+nmu1.1 [98.3 kB] Get:860 http://deb.debian.org/debian/ stretch/main libfuse2 amd64 2.9.7-1+deb9u2 [126 kB] Get:861 http://deb.debian.org/debian/ stretch/main libgail18 amd64 2.24.31-2 [54.1 kB] Get:862 http://deb.debian.org/debian/ stretch/main libgail-common amd64 2.24.31-2 [153 kB] Get:863 http://deb.debian.org/debian/ stretch/main libgenome-1.3-0v5 amd64 1.3.1-9 [111 kB] Get:864 http://deb.debian.org/debian/ stretch/main libgetopt-java all 1.0.14+dfsg-3 [24.9 kB] Get:865 http://deb.debian.org/debian/ stretch/main libgetopt-long-descriptive-perl all 0.100-1 [26.9 kB] Get:866 http://deb.debian.org/debian/ stretch/main libllvm3.9 amd64 1:3.9.1-9 [11.3 MB] Get:867 http://deb.debian.org/debian/ stretch/main libgl1-mesa-dri amd64 13.0.6-1+b2 [4536 kB] Get:868 http://deb.debian.org/debian/ stretch/main libglpk-java amd64 1.7.0-1 [776 kB] Get:869 http://deb.debian.org/debian/ stretch/main libparse-yapp-perl all 1.05-12 [50.5 kB] Get:870 http://deb.debian.org/debian/ stretch/main libgraph-readwrite-perl all 2.09-1 [44.7 kB] Get:871 http://deb.debian.org/debian/ stretch/main libntlm0 amd64 1.4-8 [20.9 kB] Get:872 http://deb.debian.org/debian/ stretch/main libgsasl7 amd64 1.8.0-8+b2 [207 kB] Get:873 http://deb.debian.org/debian/ stretch/main libgsl-dev amd64 2.3+dfsg-1 [992 kB] Get:874 http://deb.debian.org/debian/ stretch/main libgts-bin amd64 0.7.6+darcs121130-4 [50.8 kB] Get:875 http://deb.debian.org/debian/ stretch/main libicu-dev amd64 57.1-6+deb9u4 [16.5 MB] Get:876 http://deb.debian.org/debian/ stretch/main libilmbase12 amd64 2.2.0-12 [85.3 kB] Get:877 http://deb.debian.org/debian/ stretch/main libipc-shareable-perl all 0.61-1 [35.4 kB] Get:878 http://deb.debian.org/debian/ stretch/main libjline-java all 1.0-2 [69.5 kB] Get:879 http://deb.debian.org/debian/ stretch/main libjs-bootstrap all 3.3.7+dfsg-2+deb9u2 [277 kB] Get:880 http://deb.debian.org/debian/ stretch/main libjs-d3 all 3.5.17-2 [132 kB] Get:881 http://deb.debian.org/debian/ stretch/main libjs-es5-shim all 4.5.9-1 [41.3 kB] Get:882 http://deb.debian.org/debian/ stretch/main libjs-json all 0~20160510-1 [24.2 kB] Get:883 http://deb.debian.org/debian/ stretch/main libvecmath-java all 1.5.2-5 [76.9 kB] Get:884 http://deb.debian.org/debian/ stretch/main libjung-free-java all 2.0.1+dfsg-1 [976 kB] Get:885 http://deb.debian.org/debian/ stretch/main libjxr0 amd64 1.1-6+b1 [160 kB] Get:886 http://deb.debian.org/debian/ stretch/main libjxr-tools amd64 1.1-6+b1 [17.0 kB] Get:887 http://deb.debian.org/debian/ stretch/main libmbedcrypto0 amd64 2.4.2-1+deb9u3 [171 kB] Get:888 http://deb.debian.org/debian/ stretch/main libmbedx509-0 amd64 2.4.2-1+deb9u3 [70.7 kB] Get:889 http://deb.debian.org/debian/ stretch/main libmbedtls10 amd64 2.4.2-1+deb9u3 [102 kB] Get:890 http://deb.debian.org/debian/ stretch/main libmbedtls-dev amd64 2.4.2-1+deb9u3 [161 kB] Get:891 http://deb.debian.org/debian/ stretch/main libkdf5-2 amd64 2.8.1+dfsg-2 [13.6 kB] Get:892 http://deb.debian.org/debian/ stretch/main libkyotocabinet16v5 amd64 1.2.76-4.2+b1 [298 kB] Get:893 http://deb.debian.org/debian/ stretch/main liblog-dispatch-perl all 2.58-1 [72.5 kB] Get:894 http://deb.debian.org/debian/ stretch/main liblog-log4perl-perl all 1.48-1+deb9u1 [376 kB] Get:895 http://deb.debian.org/debian/ stretch/main libltdl-dev amd64 2.4.6-2 [161 kB] Get:896 http://deb.debian.org/debian/ stretch/main libopenexr22 amd64 2.2.0-11+b1 [577 kB] Get:897 http://deb.debian.org/debian/ stretch/main libwmf0.2-7 amd64 0.2.8.4-10.6 [167 kB] Get:898 http://deb.debian.org/debian/ stretch/main libmagickcore-6.q16-3-extra amd64 8:6.9.7.4+dfsg-11+deb9u8 [191 kB] Get:899 http://deb.debian.org/debian/ stretch/main mailutils-common all 1:3.1.1-1 [642 kB] Get:900 http://deb.debian.org/debian/ stretch/main libmailutils5 amd64 1:3.1.1-1 [817 kB] Get:901 http://deb.debian.org/debian/ stretch/main libmath-random-isaac-xs-perl amd64 1.004-2+b2 [17.5 kB] Get:902 http://deb.debian.org/debian/ stretch/main libmuscle-3.7-1 amd64 3.7+4565-2 [252 kB] Get:903 http://deb.debian.org/debian/ stretch/main libmems-1.6-1v5 amd64 1.6.0+4725-4 [644 kB] Get:904 http://deb.debian.org/debian/ stretch/main libmime-lite-perl all 3.030-2 [72.3 kB] Get:905 http://deb.debian.org/debian/ stretch/main libmime-types-perl all 2.13-1 [61.7 kB] Get:906 http://deb.debian.org/debian/ stretch/main libmodule-runtime-conflicts-perl all 0.003-1 [6882 B] Get:907 http://deb.debian.org/debian/ stretch/main libpackage-deprecationmanager-perl all 0.17-1 [16.4 kB] Get:908 http://deb.debian.org/debian/ stretch/main libpackage-stash-xs-perl amd64 0.28-3+b1 [17.9 kB] Get:909 http://deb.debian.org/debian/ stretch/main libmoose-perl amd64 2.1807-1 [801 kB] Get:910 http://deb.debian.org/debian/ stretch/main libmoox-handlesvia-perl all 0.001008-2 [22.1 kB] Get:911 http://deb.debian.org/debian/ stretch/main libnamespace-autoclean-perl all 0.28-1 [14.7 kB] Get:912 http://deb.debian.org/debian/ stretch/main libnanoxml2-java all 2.2.3.dfsg-5 [58.1 kB] Get:913 http://deb.debian.org/debian/ stretch/main libncbi-vdb2 amd64 2.8.1+dfsg-2 [1037 kB] Get:914 http://deb.debian.org/debian/ stretch/main libncbi-wvdb2 amd64 2.8.1+dfsg-2 [939 kB] Get:915 http://deb.debian.org/debian/ stretch/main netpbm amd64 2:10.0-15.3+b2 [1029 kB] Get:916 http://deb.debian.org/debian/ stretch/main libnetpbm10 amd64 2:10.0-15.3+b2 [86.7 kB] Get:917 http://deb.debian.org/debian/ stretch/main libpath-tiny-perl all 0.100-1 [66.0 kB] Get:918 http://deb.debian.org/debian/ stretch/main libperlio-utf8-strict-perl amd64 0.006-1+b2 [11.3 kB] Get:919 http://deb.debian.org/debian/ stretch/main libpod-markdown-perl all 3.005000-1 [32.7 kB] Get:920 http://deb.debian.org/debian/ stretch/main libpod-readme-perl all 1.1.2-1 [45.0 kB] Get:921 http://deb.debian.org/debian/ stretch/main libpoppler-qt4-4 amd64 0.48.0-2+deb9u2 [136 kB] Get:922 http://deb.debian.org/debian/ stretch/main libprocessing-core-java all 1.2.1-1 [173 kB] Get:923 http://deb.debian.org/debian/ stretch/main qtchooser amd64 63-g13a3d08-1 [25.2 kB] Get:924 http://deb.debian.org/debian/ stretch/main qdbus amd64 4:4.8.7+dfsg-11 [76.8 kB] Get:925 http://deb.debian.org/debian/ stretch/main libqt4-dbus amd64 4:4.8.7+dfsg-11 [52.7 kB] Get:926 http://deb.debian.org/debian/ stretch/main libqt4-script amd64 4:4.8.7+dfsg-11 [861 kB] Get:927 http://deb.debian.org/debian/ stretch/main libqt4-declarative amd64 4:4.8.7+dfsg-11 [1131 kB] Get:928 http://deb.debian.org/debian/ stretch/main libqt4-designer amd64 4:4.8.7+dfsg-11 [3679 kB] Get:929 http://deb.debian.org/debian/ stretch/main libqt4-help amd64 4:4.8.7+dfsg-11 [252 kB] Get:930 http://deb.debian.org/debian/ stretch/main libqt4-scripttools amd64 4:4.8.7+dfsg-11 [270 kB] Get:931 http://deb.debian.org/debian/ stretch/main libqt5xml5 amd64 5.7.1+dfsg-3+deb9u2 [120 kB] Get:932 http://deb.debian.org/debian/ stretch/main libqtassistantclient4 amd64 4.6.3-7+b1 [12.9 kB] Get:933 http://deb.debian.org/debian/ stretch/main librdp-taxonomy-tree-java all 1.2.0-1 [17.4 kB] Get:934 http://deb.debian.org/debian/ stretch/main librhino-java all 1.7.7.1-1 [1160 kB] Get:935 http://deb.debian.org/debian/ stretch/main libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:936 http://deb.debian.org/debian/ stretch/main libsaxon-java all 1:6.5.5-10 [1076 kB] Get:937 http://deb.debian.org/debian/ stretch/main libsmithwaterman0 amd64 0.0+20160702-1+b1 [33.0 kB] Get:938 http://deb.debian.org/debian/ stretch/main libssw-java amd64 1.1-1+b1 [13.8 kB] Get:939 http://deb.debian.org/debian/ stretch/main libsub-uplevel-perl all 0.2600-1 [16.1 kB] Get:940 http://deb.debian.org/debian/ stretch/main libtabixpp0 amd64 1.0.0-2 [7864 B] Get:941 http://deb.debian.org/debian/ stretch/main libtcmalloc-minimal4 amd64 2.5-2.2 [121 kB] Get:942 http://deb.debian.org/debian/ stretch/main libtest-deep-perl all 1.126-1 [48.4 kB] Get:943 http://deb.debian.org/debian/ stretch/main libtext-diff-perl all 1.44-1 [27.4 kB] Get:944 http://deb.debian.org/debian/ stretch/main libtest-differences-perl all 0.64-1 [18.0 kB] Get:945 http://deb.debian.org/debian/ stretch/main libtest-exception-perl all 0.43-1 [18.7 kB] Get:946 http://deb.debian.org/debian/ stretch/main libtest-file-perl all 1.442-1 [19.8 kB] Get:947 http://deb.debian.org/debian/ stretch/main libtest-files-perl all 0.14-1 [11.2 kB] Get:948 http://deb.debian.org/debian/ stretch/main libtest-warn-perl all 0.32-1 [15.1 kB] Get:949 http://deb.debian.org/debian/ stretch/main libtest-simple-perl all 1.302075-1 [298 kB] Get:950 http://deb.debian.org/debian/ stretch/main libtest-most-perl all 0.35-1 [24.5 kB] Get:951 http://deb.debian.org/debian/ stretch/main libtest-output-perl all 1.03-1 [13.9 kB] Get:952 http://deb.debian.org/debian/ stretch/main libtext-csv-perl all 1.33-2 [50.5 kB] Get:953 http://deb.debian.org/debian/ stretch/main libtext-csv-xs-perl amd64 1.26-1 [114 kB] Get:954 http://deb.debian.org/debian/ stretch/main libunicode-utf8-perl amd64 0.60-1+b3 [22.3 kB] Get:955 http://deb.debian.org/debian/ stretch/main libvcflib1 amd64 1.0.0~rc1+dfsg1-3 [130 kB] Get:956 http://deb.debian.org/debian/ stretch/main libvcflib-tools amd64 1.0.0~rc1+dfsg1-3 [620 kB] Get:957 http://deb.debian.org/debian/ stretch/main libvisual-0.4-plugins amd64 1:0.4.0+dfsg1-10 [114 kB] Get:958 http://deb.debian.org/debian/ stretch/main libwacom-bin amd64 0.22-1+b1 [6150 B] Get:959 http://deb.debian.org/debian/ stretch/main libwcs5 amd64 5.16-1 [263 kB] Get:960 http://deb.debian.org/debian/ stretch/main libwebpdemux2 amd64 0.5.2-1 [73.7 kB] Get:961 http://deb.debian.org/debian/ stretch/main libwebpmux2 amd64 0.5.2-1 [83.9 kB] Get:962 http://deb.debian.org/debian/ stretch/main libxfont1 amd64 1:1.5.2-4 [136 kB] Get:963 http://deb.debian.org/debian/ stretch/main libxtables12 amd64 1.6.0+snapshot20161117-6 [75.9 kB] Get:964 http://deb.debian.org/debian/ stretch/main libzeus-jscl-java all 1.72-1 [129 kB] Get:965 http://deb.debian.org/debian/ stretch/main logol-bin amd64 1.7.5-1 [142 kB] Get:966 http://deb.debian.org/debian/ stretch/main swi-prolog-nox amd64 7.2.3+dfsg-6 [3025 kB] Get:967 http://deb.debian.org/debian/ stretch/main swi-prolog amd64 7.2.3+dfsg-6 [17.0 kB] Get:968 http://deb.debian.org/debian/ stretch/main swi-prolog-x amd64 7.2.3+dfsg-6 [2000 kB] Get:969 http://deb.debian.org/debian/ stretch/main lynx-cur all 2.8.9dev11-1 [240 kB] Get:970 http://deb.debian.org/debian/ stretch/main lynx amd64 2.8.9dev11-1 [632 kB] Get:971 http://deb.debian.org/debian/ stretch/main lynx-common all 2.8.9dev11-1 [1098 kB] Get:972 http://deb.debian.org/debian/ stretch/main macsyfinder all 1.0.2-3 [7155 kB] Get:973 http://deb.debian.org/debian/ stretch/main maffilter amd64 1.1.0-1+dfsg-2+b2 [277 kB] Get:974 http://deb.debian.org/debian/ stretch/main mailutils amd64 1:3.1.1-1 [573 kB] Get:975 http://deb.debian.org/debian/ stretch/main r-cran-codetools all 0.2-15-1 [46.2 kB] Get:976 http://deb.debian.org/debian/ stretch/main r-cran-iterators all 1.0.8-1 [306 kB] Get:977 http://deb.debian.org/debian/ stretch/main r-cran-foreach all 1.4.3-1 [371 kB] Get:978 http://deb.debian.org/debian/ stretch/main r-cran-gam amd64 1.14-1 [203 kB] Get:979 http://deb.debian.org/debian/ stretch/main r-cran-inline all 0.3.14-1 [91.8 kB] Get:980 http://deb.debian.org/debian/ stretch/main r-cran-rcppgsl amd64 0.3.2-2 [306 kB] Get:981 http://deb.debian.org/debian/ stretch/main mapdamage all 2.0.6+dfsg-2 [38.8 kB] Get:982 http://deb.debian.org/debian/ stretch/main mapsembler2 amd64 2.2.3+dfsg-3+b1 [250 kB] Get:983 http://deb.debian.org/debian/ stretch/main maq amd64 0.7.1-7 [311 kB] Get:984 http://deb.debian.org/debian/ stretch/main maqview amd64 0.2.5-7+b1 [113 kB] Get:985 http://deb.debian.org/debian/ stretch/main massxpert amd64 3.6.1-1 [877 kB] Get:986 http://deb.debian.org/debian/ stretch/main massxpert-data all 3.6.1-1 [87.5 kB] Get:987 http://deb.debian.org/debian/ stretch/main progressivemauve amd64 1.2.0+4713-2+b2 [828 kB] Get:988 http://deb.debian.org/debian/ stretch/main mauve-aligner amd64 2.4.0+4734-3 [493 kB] Get:989 http://deb.debian.org/debian/ stretch/main mcl amd64 1:14-137-1+b1 [619 kB] Get:990 http://deb.debian.org/debian/ stretch/main menu amd64 2.1.47+b1 [380 kB] Get:991 http://deb.debian.org/debian/ stretch/main mesa-utils amd64 8.3.0-3 [32.7 kB] Get:992 http://deb.debian.org/debian/ stretch/main metaphlan2-data all 2.6.0+ds-2 [204 MB] Get:993 http://deb.debian.org/debian/ stretch/main pyqi all 0.3.2+dfsg-2 [72.0 kB] Get:994 http://deb.debian.org/debian/ stretch/main python-colorama all 0.3.7-1 [25.7 kB] Get:995 http://deb.debian.org/debian/ stretch/main python-click all 6.6-1 [56.1 kB] Get:996 http://deb.debian.org/debian/ stretch/main python-configparser all 3.3.0r2-2 [62.1 kB] Get:997 http://deb.debian.org/debian/ stretch/main python-future all 0.15.2-4 [347 kB] Get:998 http://deb.debian.org/debian/ stretch/main python-biom-format amd64 2.1.5+dfsg-7 [183 kB] Get:999 http://deb.debian.org/debian/ stretch/main python-msgpack amd64 0.4.8-1 [67.8 kB] Get:1000 http://deb.debian.org/debian/ stretch/main python-pandas-lib amd64 0.19.2-5.1 [2275 kB] Get:1001 http://deb.debian.org/debian/ stretch/main python-pandas all 0.19.2-5.1 [2616 kB] Get:1002 http://deb.debian.org/debian/ stretch/main metaphlan2 all 2.6.0+ds-2 [73.3 MB] Get:1003 http://deb.debian.org/debian/ stretch/main mhap all 2.1.1+dfsg-1 [159 kB] Get:1004 http://deb.debian.org/debian/ stretch/main python-matplotlib-venn all 0.11.5-1 [28.8 kB] Get:1005 http://deb.debian.org/debian/ stretch/main python-sip amd64 4.18.1+dfsg-2 [88.7 kB] Get:1006 http://deb.debian.org/debian/ stretch/main python-qt4 amd64 4.11.4+dfsg-2+b1 [2198 kB] Get:1007 http://deb.debian.org/debian/ stretch/main microbegps all 1.0.0-2 [14.2 MB] Get:1008 http://deb.debian.org/debian/ stretch/main minia amd64 1.6906-1+b2 [67.9 kB] Get:1009 http://deb.debian.org/debian/ stretch/main miniasm amd64 0.2+dfsg-2+b1 [29.5 kB] Get:1010 http://deb.debian.org/debian/ stretch/main minimap amd64 0.2-3+b1 [26.8 kB] Get:1011 http://deb.debian.org/debian/ stretch/main mothur amd64 1.38.1.1-1 [4740 kB] Get:1012 http://deb.debian.org/debian/ stretch/main r-cran-gtools amd64 3.5.0-1 [139 kB] Get:1013 http://deb.debian.org/debian/ stretch/main r-cran-gdata all 2.17.0-1 [933 kB] Get:1014 http://deb.debian.org/debian/ stretch/main r-cran-catools amd64 1.17.1-1+b1 [160 kB] Get:1015 http://deb.debian.org/debian/ stretch/main r-cran-kernsmooth amd64 2.23-15-2 [81.7 kB] Get:1016 http://deb.debian.org/debian/ stretch/main r-cran-gplots all 3.0.1-2 [522 kB] Get:1017 http://deb.debian.org/debian/ stretch/main r-cran-rocr all 1.0-7-2 [161 kB] Get:1018 http://deb.debian.org/debian/ stretch/main murasaki-common all 1.68.6-6 [144 kB] Get:1019 http://deb.debian.org/debian/ stretch/main murasaki amd64 1.68.6-6+b4 [479 kB] Get:1020 http://deb.debian.org/debian/ stretch/main mustang amd64 3.2.3-1 [113 kB] Get:1021 http://deb.debian.org/debian/ stretch/main nanopolish amd64 0.5.0-1+b1 [1915 kB] Get:1022 http://deb.debian.org/debian/ stretch/main ncbi-entrez-direct amd64 6.10.20170123+ds-1 [577 kB] Get:1023 http://deb.debian.org/debian/ stretch/main ncbi-epcr amd64 2.3.12-1-4 [113 kB] Get:1024 http://deb.debian.org/debian/ stretch/main ncl-tools amd64 2.1.18+dfsg-2+b1 [104 kB] Get:1025 http://deb.debian.org/debian/ stretch/main notification-daemon amd64 3.20.0-1+b1 [60.5 kB] Get:1026 http://deb.debian.org/debian/ stretch/main openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:1027 http://deb.debian.org/debian/ stretch/main paraclu amd64 9-1+b2 [10.5 kB] Get:1028 http://deb.debian.org/debian/ stretch/main parafly amd64 0.0.2013.01.21-3+b1 [16.4 kB] Get:1029 http://deb.debian.org/debian/ stretch/main parsinsert amd64 1.04-2 [59.8 kB] Get:1030 http://deb.debian.org/debian/ stretch/main phipack amd64 0.0.20160614-2 [50.6 kB] Get:1031 http://deb.debian.org/debian/ stretch/main parsnp amd64 1.2+dfsg-3 [528 kB] Get:1032 http://deb.debian.org/debian/ stretch/main python-pbalign all 0.3.0-1 [37.2 kB] Get:1033 http://deb.debian.org/debian/ stretch/main pbalign all 0.3.0-1 [7482 B] Get:1034 http://deb.debian.org/debian/ stretch/main pbbamtools amd64 0.7.4+ds-1 [116 kB] Get:1035 http://deb.debian.org/debian/ stretch/main pbbarcode amd64 0.8.0-4 [26.5 kB] Get:1036 http://deb.debian.org/debian/ stretch/main pbdagcon amd64 0.3+20161121+ds-1 [322 kB] Get:1037 http://deb.debian.org/debian/ stretch/main python-pbconsensuscore amd64 1.0.2-2 [651 kB] Get:1038 http://deb.debian.org/debian/ stretch/main python-pbgenomicconsensus all 2.1.0-1 [45.7 kB] Get:1039 http://deb.debian.org/debian/ stretch/main pbgenomicconsensus all 2.1.0-1 [26.6 kB] Get:1040 http://deb.debian.org/debian/ stretch/main python-pbh5tools amd64 0.8.0+dfsg-5 [29.0 kB] Get:1041 http://deb.debian.org/debian/ stretch/main pbh5tools all 0.8.0+dfsg-5 [8282 B] Get:1042 http://deb.debian.org/debian/ stretch/main python-pbsuite-utils all 15.8.24+dfsg-2 [508 kB] Get:1043 http://deb.debian.org/debian/ stretch/main pbjelly all 15.8.24+dfsg-2 [1210 kB] Get:1044 http://deb.debian.org/debian/ stretch/main python-pbbanana all 15.8.24+dfsg-2 [19.3 kB] Get:1045 http://deb.debian.org/debian/ stretch/main python-sortedcontainers all 1.5.7-1 [26.2 kB] Get:1046 http://deb.debian.org/debian/ stretch/main python-intervaltree all 2.1.0-2 [32.0 kB] Get:1047 http://deb.debian.org/debian/ stretch/main python-intervaltree-bio all 1.0.1-1 [7818 B] Get:1048 http://deb.debian.org/debian/ stretch/main pbhoney all 15.8.24+dfsg-2 [1311 kB] Get:1049 http://deb.debian.org/debian/ stretch/main pbsim amd64 1.0.3-2 [24.5 kB] Get:1050 http://deb.debian.org/debian/ stretch/main pbsuite all 15.8.24+dfsg-2 [4732 B] Get:1051 http://deb.debian.org/debian/ stretch/main pdb2pqr amd64 2.1.1+dfsg-2 [373 kB] Get:1052 http://deb.debian.org/debian/ stretch/main perm amd64 0.4.0-2 [121 kB] Get:1053 http://deb.debian.org/debian/ stretch/main phybin amd64 0.3-1+b1 [1785 kB] Get:1054 http://deb.debian.org/debian/ stretch/main phyml amd64 3:3.2.0+dfsg-7+b1 [1298 kB] Get:1055 http://deb.debian.org/debian/ stretch/main physamp amd64 0.2.0-1+b1 [233 kB] Get:1056 http://deb.debian.org/debian/ stretch/main piler amd64 0~20140707-1+b1 [40.2 kB] Get:1057 http://deb.debian.org/debian/ stretch/main pirs-profiles all 2.0.2+dfsg-5.1 [2566 kB] Get:1058 http://deb.debian.org/debian/ stretch/main ttf-liberation all 1:1.07.4-2 [9878 B] Get:1059 http://deb.debian.org/debian/ stretch/main pirs amd64 2.0.2+dfsg-5.1+b1 [111 kB] Get:1060 http://deb.debian.org/debian/ stretch/main pkg-config amd64 0.29-4+b1 [63.3 kB] Get:1061 http://deb.debian.org/debian/ stretch/main placnet all 1.03-2 [10.5 kB] Get:1062 http://deb.debian.org/debian/ stretch/main plast amd64 2.3.1+dfsg-4 [609 kB] Get:1063 http://deb.debian.org/debian/ stretch/main plink amd64 1.07-7 [1186 kB] Get:1064 http://deb.debian.org/debian/ stretch/main plink1.9 amd64 1.90~b3.45-170113-1 [866 kB] Get:1065 http://deb.debian.org/debian/ stretch/main python-opengl all 3.1.0+dfsg-1 [501 kB] Get:1066 http://deb.debian.org/debian/ stretch/main pymol amd64 1.8.4.0+dfsg-1 [3794 kB] Get:1067 http://deb.debian.org/debian/ stretch/main pymol-data all 1.8.4.0+dfsg-1 [1322 kB] Get:1068 http://deb.debian.org/debian/ stretch/main python-lxml amd64 3.7.1-1 [903 kB] Get:1069 http://deb.debian.org/debian/ stretch/main python-openbabel amd64 2.3.2+dfsg-3 [809 kB] Get:1070 http://deb.debian.org/debian/ stretch/main plip all 1.3.3+dfsg-1 [53.2 kB] Get:1071 http://deb.debian.org/debian/ stretch/main python-seaborn all 0.7.1-4 [128 kB] Get:1072 http://deb.debian.org/debian/ stretch/main poretools all 0.6.0+dfsg-2 [19.0 kB] Get:1073 http://deb.debian.org/debian/ stretch/main prank amd64 0.0.150803-2 [374 kB] Get:1074 http://deb.debian.org/debian/ stretch/main primer3 amd64 2.3.7-3 [173 kB] Get:1075 http://deb.debian.org/debian/ stretch/main probabel amd64 0.4.5-3+b1 [544 kB] Get:1076 http://deb.debian.org/debian/ stretch/main probalign amd64 1.4-5 [65.4 kB] Get:1077 http://deb.debian.org/debian/ stretch/main probcons amd64 1.12-11 [107 kB] Get:1078 http://deb.debian.org/debian/ stretch/main prosper all 1.00.4+cvs.2007.05.01-4.1 [420 kB] Get:1079 http://deb.debian.org/debian/ stretch/main proteinortho amd64 5.15+dfsg-1 [251 kB] Get:1080 http://deb.debian.org/debian/ stretch/main prottest all 3.4.2+dfsg-2 [347 kB] Get:1081 http://deb.debian.org/debian/ stretch/main psmisc amd64 22.21-2.1+b2 [123 kB] Get:1082 http://deb.debian.org/debian/ stretch/main python-lmfit all 0.9.5+dfsg-2 [84.5 kB] Get:1083 http://deb.debian.org/debian/ stretch/main pycorrfit amd64 0.9.9+dfsg-2 [820 kB] Get:1084 http://deb.debian.org/debian/ stretch/main python-configobj all 5.0.6-2 [35.2 kB] Get:1085 http://deb.debian.org/debian/ stretch/main python-ply all 3.9-1 [64.3 kB] Get:1086 http://deb.debian.org/debian/ stretch/main python-py all 1.4.32-3 [82.8 kB] Get:1087 http://deb.debian.org/debian/ stretch/main python-pytest all 3.0.6-1 [184 kB] Get:1088 http://deb.debian.org/debian/ stretch/main python-astropy amd64 1.3-8 [2716 kB] Get:1089 http://deb.debian.org/debian/ stretch/main pyscanfcs amd64 0.2.3-3 [541 kB] Get:1090 http://deb.debian.org/debian/ stretch/main python-antlr all 2.7.7+dfsg-7 [25.8 kB] Get:1091 http://deb.debian.org/debian/ stretch/main python-bs4 all 4.5.3-1 [86.7 kB] Get:1092 http://deb.debian.org/debian/ stretch/main python-cffi-backend amd64 1.9.1-2 [69.0 kB] Get:1093 http://deb.debian.org/debian/ stretch/main python-idna all 2.2-1 [32.6 kB] Get:1094 http://deb.debian.org/debian/ stretch/main python-ipaddress all 1.0.17-1 [18.1 kB] Get:1095 http://deb.debian.org/debian/ stretch/main python-pyasn1 all 0.1.9-2 [51.8 kB] Get:1096 http://deb.debian.org/debian/ stretch/main python-setuptools all 33.1.1-1 [297 kB] Get:1097 http://deb.debian.org/debian/ stretch/main python-cryptography amd64 1.7.1-3+deb9u2 [212 kB] Get:1098 http://deb.debian.org/debian/ stretch/main libdsdp-5.8gf amd64 5.8-9.4 [189 kB] Get:1099 http://deb.debian.org/debian/ stretch/main python-cvxopt amd64 1.1.4-1.5+deb9u1 [1338 kB] Get:1100 http://deb.debian.org/debian/ stretch/main python-dendropy all 4.2.0+dfsg-1 [7496 kB] Get:1101 http://deb.debian.org/debian/ stretch/main python-funcsigs all 1.0.2-3 [13.3 kB] Get:1102 http://deb.debian.org/debian/ stretch/main python-webencodings all 0.5-2 [10.3 kB] Get:1103 http://deb.debian.org/debian/ stretch/main python-html5lib all 0.999999999-1 [88.0 kB] Get:1104 http://deb.debian.org/debian/ stretch/main python-jdcal all 1.0-1.2~deb9u1 [7756 B] Get:1105 http://deb.debian.org/debian/ stretch/main python-mysqldb amd64 1.3.7-1.1 [52.1 kB] Get:1106 http://deb.debian.org/debian/ stretch/main python-numexpr amd64 2.6.1-4 [142 kB] Get:1107 http://deb.debian.org/debian/ stretch/main python-openpyxl all 2.3.0-3 [199 kB] Get:1108 http://deb.debian.org/debian/ stretch/main python-openssl all 16.2.0-1 [43.7 kB] Get:1109 http://deb.debian.org/debian/ stretch/main python-patsy all 0.4.1+git34-ga5b54c2-1 [171 kB] Get:1110 http://deb.debian.org/debian/ stretch/main python-pbr all 1.10.0-1 [52.4 kB] Get:1111 http://deb.debian.org/debian/ stretch/main python-pil amd64 4.0.0-4+deb9u1 [376 kB] Get:1112 http://deb.debian.org/debian/ stretch/main python-pyfits amd64 1:3.4-4 [425 kB] Get:1113 http://deb.debian.org/debian/ stretch/main python-pygraphviz amd64 1.4~rc1-1 [75.9 kB] Get:1114 http://deb.debian.org/debian/ stretch/main python-singledispatch all 3.4.0.3-2 [9690 B] Get:1115 http://deb.debian.org/debian/ stretch/main python-rpy2 amd64 2.8.5-1 [155 kB] Get:1116 http://deb.debian.org/debian/ stretch/main python-ruffus all 2.6.3+dfsg-4 [98.3 kB] Get:1117 http://deb.debian.org/debian/ stretch/main python-simplejson amd64 3.10.0-1 [70.5 kB] Get:1118 http://deb.debian.org/debian/ stretch/main python-sklearn-lib amd64 0.18-5 [1578 kB] Get:1119 http://deb.debian.org/debian/ stretch/main python-sklearn all 0.18-5 [1383 kB] Get:1120 http://deb.debian.org/debian/ stretch/main python-sympy-doc all 1.0-3 [4876 kB] Get:1121 http://deb.debian.org/debian/ stretch/main python-tables-lib amd64 3.3.0-5 [402 kB] Get:1122 http://deb.debian.org/debian/ stretch/main python-tables-data all 3.3.0-5 [50.9 kB] Get:1123 http://deb.debian.org/debian/ stretch/main python-tables all 3.3.0-5 [341 kB] Get:1124 http://deb.debian.org/debian/ stretch/main python-xlrd all 1.0.0-1 [107 kB] Get:1125 http://deb.debian.org/debian/ stretch/main python-xlwt all 0.7.5+debian1-1 [85.1 kB] Get:1126 http://deb.debian.org/debian/ stretch/main python3-bs4 all 4.5.3-1 [86.6 kB] Get:1127 http://deb.debian.org/debian/ stretch/main python3-chardet all 2.3.0-2 [96.0 kB] Get:1128 http://deb.debian.org/debian/ stretch/main python3-six all 1.10.0-3 [14.4 kB] Get:1129 http://deb.debian.org/debian/ stretch/main python3-webencodings all 0.5-2 [10.4 kB] Get:1130 http://deb.debian.org/debian/ stretch/main python3-html5lib all 0.999999999-1 [86.3 kB] Get:1131 http://deb.debian.org/debian/ stretch/main python3-pil amd64 4.0.0-4+deb9u1 [377 kB] Get:1132 http://deb.debian.org/debian/ stretch/main python3-py all 1.4.32-3 [82.9 kB] Get:1133 http://deb.debian.org/debian/ stretch/main python3-pytest all 3.0.6-1 [184 kB] Get:1134 http://deb.debian.org/debian/ stretch/main python3-renderpm amd64 3.3.0-2+deb9u1 [47.4 kB] Get:1135 http://deb.debian.org/debian/ stretch/main python3-yaml amd64 3.12-1 [108 kB] Get:1136 http://deb.debian.org/debian/ stretch/main qt-at-spi amd64 0.4.0-5 [61.6 kB] Get:1137 http://deb.debian.org/debian/ stretch/main qt5-gtk-platformtheme amd64 5.7.1+dfsg-3+deb9u2 [130 kB] Get:1138 http://deb.debian.org/debian/ stretch/main qtltools amd64 1.1+dfsg-1 [700 kB] Get:1139 http://deb.debian.org/debian/ stretch/main qttranslations5-l10n all 5.7.1~20161021-1 [1219 kB] Get:1140 http://deb.debian.org/debian/ stretch/main r-cran-boot all 1.3-18-2 [577 kB] Get:1141 http://deb.debian.org/debian/ stretch/main r-cran-foreign amd64 0.8.67-1 [211 kB] Get:1142 http://deb.debian.org/debian/ stretch/main r-cran-nlme amd64 3.1.129-1 [2042 kB] Get:1143 http://deb.debian.org/debian/ stretch/main r-cran-mgcv amd64 1.8-16-1 [2106 kB] Get:1144 http://deb.debian.org/debian/ stretch/main r-cran-class amd64 7.3-14-1 [80.9 kB] Get:1145 http://deb.debian.org/debian/ stretch/main r-cran-nnet amd64 7.3-12-1 [96.9 kB] Get:1146 http://deb.debian.org/debian/ stretch/main r-cran-spatial amd64 7.3-11-1 [118 kB] Get:1147 http://deb.debian.org/debian/ stretch/main r-recommended all 3.3.3-1 [2706 B] Get:1148 http://deb.debian.org/debian/ stretch/main r-base all 3.3.3-1 [40.7 kB] Get:1149 http://deb.debian.org/debian/ stretch/main r-base-dev all 3.3.3-1 [4402 B] Get:1150 http://deb.debian.org/debian/ stretch/main r-bioc-biocgenerics all 0.20.0-1 [483 kB] Get:1151 http://deb.debian.org/debian/ stretch/main r-bioc-biobase amd64 2.34.0-1 [1989 kB] Get:1152 http://deb.debian.org/debian/ stretch/main r-bioc-s4vectors amd64 0.12.1-2+b1 [1114 kB] Get:1153 http://deb.debian.org/debian/ stretch/main r-bioc-iranges amd64 2.8.1-1+b1 [1438 kB] Get:1154 http://deb.debian.org/debian/ stretch/main r-cran-dbi amd64 0.5-1-1 [332 kB] Get:1155 http://deb.debian.org/debian/ stretch/main r-cran-memoise all 1.0.0-1 [24.4 kB] Get:1156 http://deb.debian.org/debian/ stretch/main r-cran-rsqlite amd64 1.1-2-1 [745 kB] Get:1157 http://deb.debian.org/debian/ stretch/main r-bioc-annotationdbi all 1.36.1-2 [4190 kB] Get:1158 http://deb.debian.org/debian/ stretch/main r-cran-xml amd64 3.98-1.5-1 [1652 kB] Get:1159 http://deb.debian.org/debian/ stretch/main r-cran-xtable all 1:1.8-2-1 [694 kB] Get:1160 http://deb.debian.org/debian/ stretch/main r-cran-rcurl amd64 1.95-4.8-2 [607 kB] Get:1161 http://deb.debian.org/debian/ stretch/main r-bioc-annotate amd64 1.52.1+dfsg-1 [1908 kB] Get:1162 http://deb.debian.org/debian/ stretch/main r-bioc-biocinstaller all 1.24.0-1 [59.3 kB] Get:1163 http://deb.debian.org/debian/ stretch/main r-cran-httpuv amd64 1.3.3-3 [227 kB] Get:1164 http://deb.debian.org/debian/ stretch/main r-cran-jsonlite amd64 1.2-1 [589 kB] Get:1165 http://deb.debian.org/debian/ stretch/main r-cran-r6 all 2.2.0-2 [128 kB] Get:1166 http://deb.debian.org/debian/ stretch/main r-cran-sourcetools amd64 0.1.5-1 [43.0 kB] Get:1167 http://deb.debian.org/debian/ stretch/main r-cran-shiny all 1.0.0+dfsg-1 [1025 kB] Get:1168 http://deb.debian.org/debian/ stretch/main r-bioc-interactivedisplaybase all 1.12.0-1 [33.4 kB] Get:1169 http://deb.debian.org/debian/ stretch/main r-cran-curl amd64 2.3-1 [353 kB] Get:1170 http://deb.debian.org/debian/ stretch/main r-cran-openssl amd64 0.9.6-1 [552 kB] Get:1171 http://deb.debian.org/debian/ stretch/main r-cran-httr all 1.2.1-1 [262 kB] Get:1172 http://deb.debian.org/debian/ stretch/main r-bioc-annotationhub all 2.6.4-1 [388 kB] Get:1173 http://deb.debian.org/debian/ stretch/main r-cran-lambda.r all 1.1.9-1 [66.7 kB] Get:1174 http://deb.debian.org/debian/ stretch/main r-cran-futile.options all 1.0.0-2 [15.4 kB] Get:1175 http://deb.debian.org/debian/ stretch/main r-cran-futile.logger all 1.4.3-1 [90.8 kB] Get:1176 http://deb.debian.org/debian/ stretch/main r-cran-snow all 1:0.4.2-1 [65.0 kB] Get:1177 http://deb.debian.org/debian/ stretch/main r-bioc-biocparallel all 1.8.1-1 [633 kB] Get:1178 http://deb.debian.org/debian/ stretch/main r-bioc-biomart all 2.30.0-1 [183 kB] Get:1179 http://deb.debian.org/debian/ stretch/main r-bioc-biomformat all 1.2.0-1 [167 kB] Get:1180 http://deb.debian.org/debian/ stretch/main r-bioc-xvector amd64 0.14.0-1+b1 [338 kB] Get:1181 http://deb.debian.org/debian/ stretch/main r-bioc-biostrings amd64 2.42.1-1 [13.5 MB] Get:1182 http://deb.debian.org/debian/ stretch/main r-bioc-genomeinfodb all 1.10.3-1 [14.7 MB] Get:1183 http://deb.debian.org/debian/ stretch/main r-bioc-genomicranges amd64 1.26.2-1+b1 [1474 kB] Get:1184 http://deb.debian.org/debian/ stretch/main r-bioc-summarizedexperiment all 1.4.0-2 [1354 kB] Get:1185 http://deb.debian.org/debian/ stretch/main r-bioc-rsamtools amd64 1.26.1-2+b1 [3241 kB] Get:1186 http://deb.debian.org/debian/ stretch/main r-bioc-genomicalignments amd64 1.10.0-1+b1 [1487 kB] Get:1187 http://deb.debian.org/debian/ stretch/main r-bioc-rtracklayer amd64 1.34.1-1 [1831 kB] Get:1188 http://deb.debian.org/debian/ stretch/main r-bioc-genomicfeatures all 1.26.2-1 [1054 kB] Get:1189 http://deb.debian.org/debian/ stretch/main r-bioc-bsgenome all 1.42.0-2 [6483 kB] Get:1190 http://deb.debian.org/debian/ stretch/main r-bioc-variantannotation amd64 1.20.2-1+b1 [2233 kB] Get:1191 http://deb.debian.org/debian/ stretch/main r-bioc-ensembldb all 1.6.2-1 [1254 kB] Get:1192 http://deb.debian.org/debian/ stretch/main r-bioc-biovizbase amd64 1.22.0-2 [2537 kB] Get:1193 http://deb.debian.org/debian/ stretch/main r-cran-matrixstats amd64 0.51.0-1 [567 kB] Get:1194 http://deb.debian.org/debian/ stretch/main r-bioc-gviz all 1.18.1-1 [4296 kB] Get:1195 http://deb.debian.org/debian/ stretch/main r-bioc-cummerbund all 2.16.0-2 [2127 kB] Get:1196 http://deb.debian.org/debian/ stretch/main r-bioc-genefilter amd64 1.56.0-1 [1538 kB] Get:1197 http://deb.debian.org/debian/ stretch/main r-bioc-geneplotter all 1.52.0-2 [1492 kB] Get:1198 http://deb.debian.org/debian/ stretch/main r-bioc-deseq2 amd64 1.14.1-1 [1642 kB] Get:1199 http://deb.debian.org/debian/ stretch/main r-bioc-dnacopy amd64 1.48.0-1 [375 kB] Get:1200 http://deb.debian.org/debian/ stretch/main r-cran-blockmodeling amd64 0.1.8-1 [192 kB] Get:1201 http://deb.debian.org/debian/ stretch/main r-cran-crayon amd64 1.3.2-1 [705 kB] Get:1202 http://deb.debian.org/debian/ stretch/main r-cran-praise all 1.0.0-1 [17.5 kB] Get:1203 http://deb.debian.org/debian/ stretch/main r-cran-testthat amd64 1.0.2-2 [415 kB] Get:1204 http://deb.debian.org/debian/ stretch/main r-bioc-ebseq all 1.14.0-1 [1025 kB] Get:1205 http://deb.debian.org/debian/ stretch/main r-bioc-limma amd64 3.30.8+dfsg-1 [1055 kB] Get:1206 http://deb.debian.org/debian/ stretch/main r-bioc-edger amd64 3.14.0+dfsg-1 [543 kB] Get:1207 http://deb.debian.org/debian/ stretch/main r-bioc-hilbertvis amd64 1.32.0-1 [972 kB] Get:1208 http://deb.debian.org/debian/ stretch/main r-bioc-mergeomics all 1.2.0-1 [2592 kB] Get:1209 http://deb.debian.org/debian/ stretch/main r-cran-glmnet amd64 2.0-5-1 [1583 kB] Get:1210 http://deb.debian.org/debian/ stretch/main r-bioc-metagenomeseq all 1.16.0-2 [1940 kB] Get:1211 http://deb.debian.org/debian/ stretch/main r-bioc-multtest amd64 2.30.0-1 [637 kB] Get:1212 http://deb.debian.org/debian/ stretch/main r-cran-ade4 amd64 1.7-5-1 [4022 kB] Get:1213 http://deb.debian.org/debian/ stretch/main r-cran-ape amd64 4.0-1 [1373 kB] Get:1214 http://deb.debian.org/debian/ stretch/main r-cran-registry all 0.3-1 [190 kB] Get:1215 http://deb.debian.org/debian/ stretch/main r-cran-pkgmaker amd64 0.22-1 [549 kB] Get:1216 http://deb.debian.org/debian/ stretch/main r-cran-rngtools amd64 1.2.4-2 [153 kB] Get:1217 http://deb.debian.org/debian/ stretch/main r-cran-gridbase all 0.4-7-2 [164 kB] Get:1218 http://deb.debian.org/debian/ stretch/main r-cran-doparallel amd64 1.0.10-3 [183 kB] Get:1219 http://deb.debian.org/debian/ stretch/main r-cran-nmf amd64 0.20.6-1 [2402 kB] Get:1220 http://deb.debian.org/debian/ stretch/main r-cran-irlba amd64 2.1.2-1 [241 kB] Get:1221 http://deb.debian.org/debian/ stretch/main r-cran-igraph amd64 1.0.1-1+deb9u1 [3118 kB] Get:1222 http://deb.debian.org/debian/ stretch/main r-cran-vegan amd64 2.4-2-1 [2605 kB] Get:1223 http://deb.debian.org/debian/ stretch/main r-bioc-phyloseq all 1.19.1-2 [3105 kB] Get:1224 http://deb.debian.org/debian/ stretch/main r-bioc-qvalue all 2.6.0-1 [2788 kB] Get:1225 http://deb.debian.org/debian/ stretch/main r-bioc-shortread amd64 1.32.0-1+b1 [4228 kB] Get:1226 http://deb.debian.org/debian/ stretch/main r-cran-abind all 1.4-5-1 [40.9 kB] Get:1227 http://deb.debian.org/debian/ stretch/main r-cran-segmented all 0.5-1.4-1 [154 kB] Get:1228 http://deb.debian.org/debian/ stretch/main r-cran-seqinr amd64 3.3-3-1 [3760 kB] Get:1229 http://deb.debian.org/debian/ stretch/main r-cran-dplyr amd64 0.5.0-1 [1340 kB] Get:1230 http://deb.debian.org/debian/ stretch/main r-cran-sp amd64 1:1.2-4-1 [1474 kB] Get:1231 http://deb.debian.org/debian/ stretch/main r-cran-learnbayes all 2.15-3 [1075 kB] Get:1232 http://deb.debian.org/debian/ stretch/main r-cran-deldir amd64 0.1-12-1 [138 kB] Get:1233 http://deb.debian.org/debian/ stretch/main r-cran-coda all 0.19-1-1 [205 kB] Get:1234 http://deb.debian.org/debian/ stretch/main r-cran-gmodels all 2.16.2-2 [80.0 kB] Get:1235 http://deb.debian.org/debian/ stretch/main r-cran-spdep amd64 0.6-9-1 [3572 kB] Get:1236 http://deb.debian.org/debian/ stretch/main r-cran-adegenet amd64 2.0.1-1 [2178 kB] Get:1237 http://deb.debian.org/debian/ stretch/main r-cran-adegraphics all 1.0-6-1 [2811 kB] Get:1238 http://deb.debian.org/debian/ stretch/main r-cran-prettyunits all 1.0.2-1 [26.4 kB] Get:1239 http://deb.debian.org/debian/ stretch/main r-cran-progress all 1.1.2-1 [41.0 kB] Get:1240 http://deb.debian.org/debian/ stretch/main r-cran-rncl amd64 0.8.2-1 [413 kB] Get:1241 http://deb.debian.org/debian/ stretch/main r-cran-xml2 amd64 1.1.0-1 [257 kB] Get:1242 http://deb.debian.org/debian/ stretch/main r-cran-reshape all 0.8.6-1 [124 kB] Get:1243 http://deb.debian.org/debian/ stretch/main r-cran-bold all 0.4.0-1 [63.3 kB] Get:1244 http://deb.debian.org/debian/ stretch/main r-cran-rredlist all 0.2.0-1 [54.1 kB] Get:1245 http://deb.debian.org/debian/ stretch/main r-cran-rentrez all 1.0.4-1 [96.4 kB] Get:1246 http://deb.debian.org/debian/ stretch/main r-cran-rotl all 3.0.1-1 [238 kB] Get:1247 http://deb.debian.org/debian/ stretch/main r-cran-solrium all 0.4.0-1 [268 kB] Get:1248 http://deb.debian.org/debian/ stretch/main r-cran-ritis all 0.5.4-1 [114 kB] Get:1249 http://deb.debian.org/debian/ stretch/main r-cran-taxize all 0.8.0-1 [668 kB] Get:1250 http://deb.debian.org/debian/ stretch/main r-cran-uuid amd64 0.1.2-8 [15.3 kB] Get:1251 http://deb.debian.org/debian/ stretch/main r-cran-tidyr amd64 0.6.1-1 [337 kB] Get:1252 http://deb.debian.org/debian/ stretch/main r-cran-rnexml all 2.0.7-1 [337 kB] Get:1253 http://deb.debian.org/debian/ stretch/main r-cran-phylobase amd64 0.8.2-1 [645 kB] Get:1254 http://deb.debian.org/debian/ stretch/main r-cran-adephylo amd64 1.1-10-2 [483 kB] Get:1255 http://deb.debian.org/debian/ stretch/main r-cran-backports all 1.0.5-1 [28.6 kB] Get:1256 http://deb.debian.org/debian/ stretch/main r-cran-checkmate amd64 1.8.2-1 [458 kB] Get:1257 http://deb.debian.org/debian/ stretch/main r-cran-bbmisc amd64 1.10-1 [285 kB] Get:1258 http://deb.debian.org/debian/ stretch/main r-cran-fail amd64 1.3-1 [43.1 kB] Get:1259 http://deb.debian.org/debian/ stretch/main r-cran-batchjobs amd64 1.6-1 [422 kB] Get:1260 http://deb.debian.org/debian/ stretch/main r-cran-numderiv all 2016.8-1-1 [111 kB] Get:1261 http://deb.debian.org/debian/ stretch/main r-cran-bbmle all 1.0.18-2 [607 kB] Get:1262 http://deb.debian.org/debian/ stretch/main r-cran-bio3d amd64 2.3-1-1 [2162 kB] Get:1263 http://deb.debian.org/debian/ stretch/main r-cran-combinat all 0.0-8-4 [29.7 kB] Get:1264 http://deb.debian.org/debian/ stretch/main r-cran-distory amd64 1.4.2-1 [81.4 kB] Get:1265 http://deb.debian.org/debian/ stretch/main r-cran-domc all 1.3.4-1 [158 kB] Get:1266 http://deb.debian.org/debian/ stretch/main r-cran-ellipse all 0.3-8-1 [48.1 kB] Get:1267 http://deb.debian.org/debian/ stretch/main r-cran-fastmatch amd64 1.0-4-1 [17.3 kB] Get:1268 http://deb.debian.org/debian/ stretch/main r-cran-spam amd64 1.4-0-1 [1829 kB] Get:1269 http://deb.debian.org/debian/ stretch/main r-cran-maps amd64 3.1.1-1 [2163 kB] Get:1270 http://deb.debian.org/debian/ stretch/main r-cran-fields amd64 8.10-1 [3602 kB] Get:1271 http://deb.debian.org/debian/ stretch/main r-cran-globals amd64 0.8.0-1 [52.3 kB] Get:1272 http://deb.debian.org/debian/ stretch/main r-cran-listenv amd64 0.6.0-1 [56.3 kB] Get:1273 http://deb.debian.org/debian/ stretch/main r-cran-future all 1.2.0-1 [234 kB] Get:1274 http://deb.debian.org/debian/ stretch/main r-cran-genabel amd64 1.8-0-1+b1 [2876 kB] Get:1275 http://deb.debian.org/debian/ stretch/main r-cran-googlevis all 0.6.2-1 [1539 kB] Get:1276 http://deb.debian.org/debian/ stretch/main r-cran-htmlwidgets amd64 0.8-1 [381 kB] Get:1277 http://deb.debian.org/debian/ stretch/main r-cran-minpack.lm amd64 1.2-1-1 [68.8 kB] Get:1278 http://deb.debian.org/debian/ stretch/main r-cran-raster amd64 2.5-8-1 [2571 kB] Get:1279 http://deb.debian.org/debian/ stretch/main r-cran-readxl amd64 0.1.1-1+deb9u2 [198 kB] Get:1280 http://deb.debian.org/debian/ stretch/main r-cran-shape all 1.4.2-1 [739 kB] Get:1281 http://deb.debian.org/debian/ stretch/main r-cran-zoo amd64 1.7-14-1 [873 kB] Get:1282 http://deb.debian.org/debian/ stretch/main r-cran-luminescence amd64 0.6.4-1 [1686 kB] Get:1283 http://deb.debian.org/debian/ stretch/main r-cran-mapproj amd64 1.2-4-1 [47.8 kB] Get:1284 http://deb.debian.org/debian/ stretch/main r-cran-optparse all 1.3.2-1 [60.0 kB] Get:1285 http://deb.debian.org/debian/ stretch/main r-cran-quadprog amd64 1.5-5-2 [31.2 kB] Get:1286 http://deb.debian.org/debian/ stretch/main r-cran-phangorn amd64 2.1.1-1 [2086 kB] Get:1287 http://deb.debian.org/debian/ stretch/main r-cran-proto amd64 1.0.0-1 [461 kB] Get:1288 http://deb.debian.org/debian/ stretch/main r-cran-r.methodss3 amd64 1.7.1-1 [59.9 kB] Get:1289 http://deb.debian.org/debian/ stretch/main r-cran-r.oo amd64 1.21.0-1 [763 kB] Get:1290 http://deb.debian.org/debian/ stretch/main r-cran-r.utils amd64 2.5.0-1 [966 kB] Get:1291 http://deb.debian.org/debian/ stretch/main r-cran-r.cache amd64 0.12.0-2 [77.0 kB] Get:1292 http://deb.debian.org/debian/ stretch/main r-cran-pscbs amd64 0.62.0-1 [3582 kB] Get:1293 http://deb.debian.org/debian/ stretch/main r-cran-qtl amd64 1.40-8-1 [4201 kB] Get:1294 http://deb.debian.org/debian/ stretch/main r-cran-randomforest amd64 4.6-12-1 [141 kB] Get:1295 http://deb.debian.org/debian/ stretch/main r-cran-rgl amd64 0.96.0-1 [2112 kB] Get:1296 http://deb.debian.org/debian/ stretch/main r-cran-rlumshiny amd64 0.1.1-1 [222 kB] Get:1297 http://deb.debian.org/debian/ stretch/main r-cran-scatterd3 all 0.8.1+dfsg-1 [167 kB] Get:1298 http://deb.debian.org/debian/ stretch/main r-cran-shinybs all 0.61-1 [88.8 kB] Get:1299 http://deb.debian.org/debian/ stretch/main r-cran-tcltk2 all 1.2-11-1 [676 kB] Get:1300 http://deb.debian.org/debian/ stretch/main r-cran-treescape amd64 1.10.18-6 [1955 kB] Get:1301 http://deb.debian.org/debian/ stretch/main ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:1302 http://deb.debian.org/debian/ stretch/main ruby-minitest all 5.9.0-1 [51.1 kB] Get:1303 http://deb.debian.org/debian/ stretch/main ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:1304 http://deb.debian.org/debian/ stretch/main ruby-power-assert all 0.3.0-1 [7902 B] Get:1305 http://deb.debian.org/debian/ stretch/main ruby-test-unit all 3.1.7-2 [69.6 kB] Get:1306 http://deb.debian.org/debian/ stretch/main libruby2.3 amd64 2.3.3-1+deb9u8 [3108 kB] Get:1307 http://deb.debian.org/debian/ stretch/main ruby2.3 amd64 2.3.3-1+deb9u8 [189 kB] Get:1308 http://deb.debian.org/debian/ stretch/main ruby amd64 1:2.3.3 [10.8 kB] Get:1309 http://deb.debian.org/debian/ stretch/main rake all 10.5.0-2+deb9u1 [49.7 kB] Get:1310 http://deb.debian.org/debian/ stretch/main rambo-k all 1.21+dfsg-1 [1167 kB] Get:1311 http://deb.debian.org/debian/ stretch/main rapmap amd64 0.4.0+dfsg-2 [785 kB] Get:1312 http://deb.debian.org/debian/ stretch/main rdp-readseq all 2.0.2-2 [446 kB] Get:1313 http://deb.debian.org/debian/ stretch/main rdp-alignment all 1.2.0-2 [77.5 kB] Get:1314 http://deb.debian.org/debian/ stretch/main rdp-classifier all 2.10.2-1 [220 kB] Get:1315 http://deb.debian.org/debian/ stretch/main rdp-classifier-doc all 2.10.2-1 [259 kB] Get:1316 http://deb.debian.org/debian/ stretch/main snpomatic amd64 1.0-3+b1 [82.0 kB] Get:1317 http://deb.debian.org/debian/ stretch/main tabix amd64 1.3.2-2 [257 kB] Get:1318 http://deb.debian.org/debian/ stretch/main reapr amd64 1.0.18+dfsg-3 [226 kB] Get:1319 http://deb.debian.org/debian/ stretch/main repeatmasker-recon amd64 1.08-3+b1 [101 kB] Get:1320 http://deb.debian.org/debian/ stretch/main rhino all 1.7.7.1-1 [26.6 kB] Get:1321 http://deb.debian.org/debian/ stretch/main rna-star amd64 2.5.2b+dfsg-1 [366 kB] Get:1322 http://deb.debian.org/debian/ stretch/main roary all 3.8.0+dfsg-1 [170 kB] Get:1323 http://deb.debian.org/debian/ stretch/main bowtie amd64 1.1.2-6 [1618 kB] Get:1324 http://deb.debian.org/debian/ stretch/main rsem amd64 1.2.31+dfsg-1 [765 kB] Get:1325 http://deb.debian.org/debian/ stretch/main saint amd64 2.5.0+dfsg-2+b1 [88.5 kB] Get:1326 http://deb.debian.org/debian/ stretch/main libjs-modernizr all 2.6.2+ds1-1 [71.3 kB] Get:1327 http://deb.debian.org/debian/ stretch/main sphinx-rtd-theme-common all 0.1.9-1 [210 kB] Get:1328 http://deb.debian.org/debian/ stretch/main salmon amd64 0.7.2+ds1-2+b1 [1622 kB] Get:1329 http://deb.debian.org/debian/ stretch/main sane-utils amd64 1.0.25-4.1 [225 kB] Get:1330 http://deb.debian.org/debian/ stretch/main scrm amd64 1.7.2-1+b1 [62.3 kB] Get:1331 http://deb.debian.org/debian/ stretch/main scythe amd64 0.994-4 [18.2 kB] Get:1332 http://deb.debian.org/debian/ stretch/main seaview amd64 1:4.6.1.2-2 [339 kB] Get:1333 http://deb.debian.org/debian/ stretch/main seer amd64 1.1.2-3 [398 kB] Get:1334 http://deb.debian.org/debian/ stretch/main seqan-apps amd64 2.3.1+dfsg-4 [11.5 MB] Get:1335 http://deb.debian.org/debian/ stretch/main seqprep amd64 1.3.2-1 [27.8 kB] Get:1336 http://deb.debian.org/debian/ stretch/main sga amd64 0.10.15-2 [1008 kB] Get:1337 http://deb.debian.org/debian/ stretch/main sickle amd64 1.33-1+b1 [18.2 kB] Get:1338 http://deb.debian.org/debian/ stretch/main smithwaterman amd64 0.0+20160702-1+b1 [9036 B] Get:1339 http://deb.debian.org/debian/ stretch/main smrtanalysis all 0~20161126 [2518 B] Get:1340 http://deb.debian.org/debian/ stretch/main snap-aligner amd64 1.0~beta.18+dfsg-1 [1617 kB] Get:1341 http://deb.debian.org/debian/ stretch/main sniffles amd64 1.0.2+ds-1 [146 kB] Get:1342 http://deb.debian.org/debian/ stretch/main soapdenovo2 amd64 240+dfsg1-2 [450 kB] Get:1343 http://deb.debian.org/debian/ stretch/main sortmerna amd64 2.1-1+b1 [537 kB] Get:1344 http://deb.debian.org/debian/ stretch/main spaced amd64 1.0.2+dfsg-1+b1 [49.3 kB] Get:1345 http://deb.debian.org/debian/ stretch/main sprai amd64 0.9.9.22+dfsg-1 [1513 kB] Get:1346 http://deb.debian.org/debian/ stretch/main spread-phy all 1.0.7+dfsg-1 [3313 kB] Get:1347 http://deb.debian.org/debian/ stretch/main sra-toolkit amd64 2.8.1-2+dfsg-2 [1487 kB] Get:1348 http://deb.debian.org/debian/ stretch/main srst2 amd64 0.2.0-4 [60.5 kB] Get:1349 http://deb.debian.org/debian/ stretch/main sspace all 2.1.1+dfsg-2 [1339 kB] Get:1350 http://deb.debian.org/debian/ stretch/main ssw-align amd64 1.1-1+b1 [12.8 kB] Get:1351 http://deb.debian.org/debian/ stretch/main stacks amd64 1.44-2+b1 [1031 kB] Get:1352 http://deb.debian.org/debian/ stretch/main staden amd64 2.0.0+b11-2+b1 [1614 kB] Get:1353 http://deb.debian.org/debian/ stretch/main staden-common all 2.0.0+b11-2 [1973 kB] Get:1354 http://deb.debian.org/debian/ stretch/main staden-io-lib-utils amd64 1.14.8-2 [250 kB] Get:1355 http://deb.debian.org/debian/ stretch/main subread amd64 1.5.1+dfsg-4 [570 kB] Get:1356 http://deb.debian.org/debian/ stretch/main suitename amd64 0.3.070628-1+b1 [21.3 kB] Get:1357 http://deb.debian.org/debian/ stretch/main sumaclust amd64 1.0.20-1+b1 [114 kB] Get:1358 http://deb.debian.org/debian/ stretch/main sumatra amd64 1.0.20-1+b1 [98.8 kB] Get:1359 http://deb.debian.org/debian/ stretch/main sumtrees all 4.2.0+dfsg-1 [27.3 kB] Get:1360 http://deb.debian.org/debian/ stretch/main surankco all 0.0.r5+dfsg-1 [76.7 kB] Get:1361 http://deb.debian.org/debian/ stretch/main swarm amd64 2.1.12+dfsg-1 [72.1 kB] Get:1362 http://deb.debian.org/debian/ stretch/main t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:1363 http://deb.debian.org/debian/ stretch/main tantan amd64 13-4 [36.1 kB] Get:1364 http://deb.debian.org/debian/ stretch/main tex-gyre all 20160520-1 [5000 kB] Get:1365 http://deb.debian.org/debian/ stretch/main texlive-generic-extra all 2016.20170123-5 [14.9 MB] Get:1366 http://deb.debian.org/debian/ stretch/main texlive-science all 2016.20170123-5 [3043 kB] Get:1367 http://deb.debian.org/debian/ stretch/main texlive-science-doc all 2016.20170123-5 [46.3 MB] Get:1368 http://deb.debian.org/debian/ stretch/main tigr-glimmer amd64 3.02b-1 [283 kB] Get:1369 http://deb.debian.org/debian/ stretch/main tophat amd64 2.1.1+dfsg-2+b2 [755 kB] Get:1370 http://deb.debian.org/debian/ stretch/main toppred amd64 1.10-4 [61.9 kB] Get:1371 http://deb.debian.org/debian/ stretch/main transdecoder all 3.0.1+dfsg-1 [62.8 kB] Get:1372 http://deb.debian.org/debian/ stretch/main transrate-tools amd64 1.0.0-1+b1 [16.6 kB] Get:1373 http://deb.debian.org/debian/ stretch/main transtermhp amd64 2.09-3+b1 [131 kB] Get:1374 http://deb.debian.org/debian/ stretch/main treeview all 1.1.6.4+dfsg1-2 [2720 kB] Get:1375 http://deb.debian.org/debian/ stretch/main trinityrnaseq amd64 2.2.0+dfsg-2+b1 [1748 kB] Get:1376 http://deb.debian.org/debian/ stretch/main trinityrnaseq-examples all 2.2.0+dfsg-2 [154 MB] Get:1377 http://deb.debian.org/debian/ stretch/main uc-echo amd64 1.12-9+b1 [76.7 kB] Get:1378 http://deb.debian.org/debian/ stretch/main varna all 3-93+ds-1 [761 kB] Get:1379 http://deb.debian.org/debian/ stretch/main vprerex amd64 6.5.3-1+b2 [25.6 kB] Get:1380 http://deb.debian.org/debian/ stretch/main vsearch amd64 2.3.4-1 [257 kB] Get:1381 http://deb.debian.org/debian/ stretch/main xfonts-encodings all 1:1.0.4-2 [574 kB] Get:1382 http://deb.debian.org/debian/ stretch/main xfonts-utils amd64 1:7.7+4 [77.2 kB] Get:1383 http://deb.debian.org/debian/ stretch/main xfonts-100dpi all 1:1.0.4+nmu1 [3822 kB] Get:1384 http://deb.debian.org/debian/ stretch/main acedb-other-belvu amd64 4.9.39+dfsg.02-1 [188 kB] Get:1385 http://deb.debian.org/debian/ stretch/main acedb-other-dotter amd64 4.9.39+dfsg.02-1 [208 kB] Get:1386 http://deb.debian.org/debian/ stretch/main astro-tasks all 1.0 [10.8 kB] Get:1387 http://deb.debian.org/debian/ stretch/main autodock-vina amd64 1.1.2-3+b6 [175 kB] Get:1388 http://deb.debian.org/debian/ stretch/main critterding amd64 1.0-beta12.1-1.3+b1 [730 kB] Get:1389 http://deb.debian.org/debian/ stretch/main datamash amd64 1.0.7-1 [744 kB] Get:1390 http://deb.debian.org/debian/ stretch/main debichem-tasks all 0.0.6 [3750 B] Get:1391 http://deb.debian.org/debian/ stretch/main disulfinder amd64 1.2.11-6 [261 kB] Get:1392 http://deb.debian.org/debian/ stretch/main edtsurf amd64 0.2009-4+b1 [59.1 kB] Get:1393 http://deb.debian.org/debian/ stretch/main ffindex amd64 0.9.9.7-3 [29.6 kB] Get:1394 http://deb.debian.org/debian/ stretch/main libffindex0 amd64 0.9.9.7-3 [16.7 kB] Get:1395 http://deb.debian.org/debian/ stretch/main gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] Get:1396 http://deb.debian.org/debian/ stretch/main gromacs amd64 2016.1-2 [234 kB] Get:1397 http://deb.debian.org/debian/ stretch/main gromacs-data all 2016.1-2 [22.1 MB] Get:1398 http://deb.debian.org/debian/ stretch/main libgromacs2 amd64 2016.1-2 [11.3 MB] Get:1399 http://deb.debian.org/debian/ stretch/main hhsuite amd64 3.0~beta2+dfsg-3 [1005 kB] Get:1400 http://deb.debian.org/debian/ stretch/main hhsuite-data all 3.0~beta2+dfsg-3 [2164 kB] Get:1401 http://deb.debian.org/debian/ stretch/main med-bio all 3.0.1 [18.7 kB] Get:1402 http://deb.debian.org/debian/ stretch/main med-tasks all 3.0.1 [14.3 kB] Get:1403 http://deb.debian.org/debian/ stretch/main med-config all 3.0.1 [17.1 kB] Get:1404 http://deb.debian.org/debian/ stretch/main populations amd64 1.2.33+svn0120106-2.1+b1 [186 kB] Get:1405 http://deb.debian.org/debian/ stretch/main pp-popularity-contest amd64 1.0.6-2+b4 [33.3 kB] Get:1406 http://deb.debian.org/debian/ stretch/main publicsuffix all 20190415.1030-0+deb9u1 [108 kB] Get:1407 http://deb.debian.org/debian/ stretch/main python-mock all 2.0.0-3 [59.8 kB] Get:1408 http://deb.debian.org/debian/ stretch/main python-mpi4py amd64 2.0.0-2.1+deb9u1 [425 kB] Get:1409 http://deb.debian.org/debian/ stretch/main python-statsmodels-lib amd64 0.8.0~rc1+git59-gef47cd9-5 [291 kB] Get:1410 http://deb.debian.org/debian/ stretch/main python-statsmodels all 0.8.0~rc1+git59-gef47cd9-5 [3312 kB] Get:1411 http://deb.debian.org/debian/ stretch/main python3-scipy amd64 0.18.1-2 [8534 kB] Get:1412 http://deb.debian.org/debian/ stretch/main r-base-html all 3.3.3-1 [85.9 kB] Get:1413 http://deb.debian.org/debian/ stretch/main rate4site amd64 3.0.0-4+b1 [648 kB] Get:1414 http://deb.debian.org/debian/ stretch/main science-biology all 1.7 [16.4 kB] Get:1415 http://deb.debian.org/debian/ stretch/main science-tasks all 1.7 [17.4 kB] Get:1416 http://deb.debian.org/debian/ stretch/main science-config all 1.7 [18.7 kB] Get:1417 http://deb.debian.org/debian/ stretch/main vcftools amd64 0.1.14+dfsg-4+deb9u1 [458 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3059 MB in 1min 21s (37.6 MB/s) Selecting previously unselected package libfdisk1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 164381 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 164387 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.9_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59.9) over (2.88dsf-59) ... Replacing files in old package initscripts (2.88dsf-59) ... Preparing to unpack .../init-system-helpers_1.48_all.deb ... Unpacking init-system-helpers (1.48) over (1.22) ... Replacing files in old package sysv-rc (2.88dsf-59) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up init-system-helpers (1.48) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 164383 files and directories currently installed.) Preparing to unpack .../util-linux_2.29.2-1+deb9u1_amd64.deb ... Unpacking util-linux (2.29.2-1+deb9u1) over (2.25.2-6) ... Replacing files in old package initscripts (2.88dsf-59) ... Processing triggers for mime-support (3.60) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up util-linux (2.29.2-1+deb9u1) ... Installing new version of config file /etc/init.d/hwclock.sh ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 164414 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.9_amd64.deb ... Unpacking initscripts (2.88dsf-59.9) over (2.88dsf-59) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up sysvinit-utils (2.88dsf-59.9) ... Setting up initscripts (2.88dsf-59.9) ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/umountfs ... Installing new version of config file /etc/init.d/umountroot ... Installing new version of config file /etc/default/rcS ... Installing new version of config file /etc/default/tmpfs ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 164414 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.9_all.deb ... Unpacking sysv-rc (2.88dsf-59.9) over (2.88dsf-59) ... Setting up sysv-rc (2.88dsf-59.9) ... Processing triggers for systemd (215-17+deb8u7) ... Selecting previously unselected package libnumber-format-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 164412 files and directories currently installed.) Preparing to unpack .../libnumber-format-perl_1.75-1_all.deb ... Unpacking libnumber-format-perl (1.75-1) ... Selecting previously unselected package libstatistics-basic-perl. Preparing to unpack .../libstatistics-basic-perl_1.6611-1_all.deb ... Unpacking libstatistics-basic-perl (1.6611-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../libpng16-16_1.6.28-1+deb9u1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.28-1+deb9u1) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../libwebp6_0.5.2-1_amd64.deb ... Unpacking libwebp6:amd64 (0.5.2-1) ... Preparing to unpack .../libfreetype6_2.6.3-3.2+deb9u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u1) over (2.5.2-3+deb8u2) ... Preparing to unpack .../libgd3_2.2.4-2+deb9u5_amd64.deb ... Unpacking libgd3:amd64 (2.2.4-2+deb9u5) over (2.1.0-5+deb8u11) ... Preparing to unpack .../libgd-perl_2.53-3_amd64.deb ... Unpacking libgd-perl (2.53-3) over (2.53-1+b1) ... Preparing to unpack .../libparams-validate-perl_1.26-1_amd64.deb ... Unpacking libparams-validate-perl (1.26-1) over (1.13-1+b1) ... Selecting previously unselected package liblist-someutils-perl. Preparing to unpack .../liblist-someutils-perl_0.53-1_all.deb ... Unpacking liblist-someutils-perl (0.53-1) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../liblist-utilsby-perl_0.10-1_all.deb ... Unpacking liblist-utilsby-perl (0.10-1) ... Preparing to unpack .../circos_0.69.4+dfsg-1_all.deb ... Unpacking circos (0.69.4+dfsg-1) over (0.66-1) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: perl-modules: dependency problems, but removing anyway as you requested: perl depends on perl-modules (>= 5.20.2-3+deb8u11). libgraphics-colornames-perl depends on libmodule-load-perl; however: Package libmodule-load-perl is not installed. Package perl-modules which provides libmodule-load-perl is to be removed. libmailtools-perl depends on libnet-perl; however: Package libnet-perl is not installed. Package perl-modules which provides libnet-perl is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 164509 files and directories currently installed.) Removing perl-modules (5.20.2-3+deb8u11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 163785 files and directories currently installed.) Preparing to unpack .../libcpan-meta-perl_2.150010-1_all.deb ... Unpacking libcpan-meta-perl (2.150010-1) over (2.142690-1) ... Preparing to unpack .../perl-doc_5.24.1-3+deb9u7_all.deb ... Leaving 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.24.1-3+deb9u7) over (5.20.2-3+deb8u11) ... Preparing to unpack .../perl_5.24.1-3+deb9u7_amd64.deb ... Unpacking perl (5.24.1-3+deb9u7) over (5.20.2-3+deb8u11) ... Selecting previously unselected package perl-modules-5.24. Preparing to unpack .../perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libperl5.24:amd64. Preparing to unpack .../libperl5.24_5.24.1-3+deb9u7_amd64.deb ... Unpacking libperl5.24:amd64 (5.24.1-3+deb9u7) ... Preparing to unpack .../libclass-xsaccessor-perl_1.19-2+b7_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-2+b7) over (1.19-2+b4) ... Preparing to unpack .../libcommon-sense-perl_3.74-2_amd64.deb ... Unpacking libcommon-sense-perl (3.74-2) over (3.73-2+b3) ... Selecting previously unselected package gcc-6-base:amd64. Preparing to unpack .../gcc-6-base_6.3.0-18+deb9u1_amd64.deb ... Unpacking gcc-6-base:amd64 (6.3.0-18+deb9u1) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up gcc-6-base:amd64 (6.3.0-18+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165135 files and directories currently installed.) Preparing to unpack .../clustalx_2.1+lgpl-5_amd64.deb ... Unpacking clustalx (2.1+lgpl-5) over (2.1+lgpl-3) ... Selecting previously unselected package libboost-date-time1.62.0:amd64. Preparing to unpack .../libboost-date-time1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-date-time1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libboost-iostreams1.62.0:amd64. Preparing to unpack .../libboost-iostreams1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-iostreams1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../libicu57_57.1-6+deb9u4_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u4) ... Selecting previously unselected package libboost-regex1.62.0:amd64. Preparing to unpack .../libboost-regex1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-regex1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libboost-serialization1.62.0:amd64. Preparing to unpack .../libboost-serialization1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-serialization1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libboost-thread1.62.0:amd64. Preparing to unpack .../libboost-thread1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-thread1.62.0:amd64 (1.62.0+dfsg-4) ... Preparing to unpack .../proftmb_1.1.12-6+b1_amd64.deb ... Unpacking proftmb (1.1.12-6+b1) over (1.1.12-2) ... Preparing to unpack .../altree_1.3.1-4+b2_amd64.deb ... Unpacking altree (1.3.1-4+b2) over (1.3.1-2+b1) ... Selecting previously unselected package libglew2.0:amd64. Preparing to unpack .../libglew2.0_2.0.0-3+b1_amd64.deb ... Unpacking libglew2.0:amd64 (2.0.0-3+b1) ... Preparing to unpack .../python-ballview_1.4.3~beta1-3_amd64.deb ... Unpacking python-ballview (1.4.3~beta1-3) over (1.4.2+20140406-1+b2) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../libpsm-infinipath1_3.3+19.g67c0807.open-3_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Selecting previously unselected package librdmacm1. Preparing to unpack .../librdmacm1_1.1.0-2_amd64.deb ... Unpacking librdmacm1 (1.1.0-2) ... Selecting previously unselected package libfabric1. Preparing to unpack .../libfabric1_1.4.0-1_amd64.deb ... Unpacking libfabric1 (1.4.0-1) ... Preparing to unpack .../ray_2.3.1-4+b1_amd64.deb ... Unpacking ray (2.3.1-4+b1) over (2.3.1-1) ... Preparing to unpack .../openmpi-common_2.0.2-2_all.deb ... Unpacking openmpi-common (2.0.2-2) over (1.6.5-9.1+deb8u1) ... Preparing to unpack .../openmpi-bin_2.0.2-2_amd64.deb ... Unpacking openmpi-bin (2.0.2-2) over (1.6.5-9.1+deb8u1) ... Preparing to unpack .../zalign_0.9.1-2+b3_amd64.deb ... Unpacking zalign (0.9.1-2+b3) over (0.9.1-1+b1) ... Selecting previously unselected package libboost-mpi1.62.0. Preparing to unpack .../libboost-mpi1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-mpi1.62.0 (1.62.0+dfsg-4) ... Preparing to unpack .../prime-phylo_1.0.11-4+b3_amd64.deb ... Unpacking prime-phylo (1.0.11-4+b3) over (1.0.11-2) ... Processing triggers for mime-support (3.60) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for shared-mime-info (1.8-1+deb9u1) ... Processing triggers for menu (2.1.47) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for python-support (1.0.15) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165232 files and directories currently installed.) Removing libboost-mpi1.55.0 (1.55.0+dfsg-3) ... dpkg: libopenmpi1.6: dependency problems, but removing anyway as you requested: ampliconnoise depends on libopenmpi1.6. python-mpi4py depends on libopenmpi1.6. Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Selecting previously unselected package libopenmpi2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165106 files and directories currently installed.) Preparing to unpack .../libopenmpi2_2.0.2-2_amd64.deb ... Unpacking libopenmpi2:amd64 (2.0.2-2) ... Preparing to unpack .../ampliconnoise_1.29-6_amd64.deb ... Unpacking ampliconnoise (1.29-6) over (1.29-2) ... Preparing to unpack .../libtamuanova-0.2_0.2-4_amd64.deb ... Unpacking libtamuanova-0.2 (0.2-4) over (0.2-3) ... Preparing to unpack .../adun.app_0.81-9+b2_amd64.deb ... Unpacking adun.app (0.81-9+b2) over (0.81-6+b1) ... Selecting previously unselected package adun-core. Preparing to unpack .../adun-core_0.81-9+b2_amd64.deb ... Unpacking adun-core (0.81-9+b2) ... Selecting previously unselected package libgif7:amd64. Preparing to unpack .../libgif7_5.1.4-0.4_amd64.deb ... Unpacking libgif7:amd64 (5.1.4-0.4) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../libopenjp2-7_2.1.2-1.1+deb9u4_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.1.2-1.1+deb9u4) ... Preparing to unpack .../gnustep-gui-runtime_0.25.0-4+b1_amd64.deb ... Unpacking gnustep-gui-runtime (0.25.0-4+b1) over (0.24.0-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for mime-support (3.60) ... Processing triggers for menu (2.1.47) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165291 files and directories currently installed.) Removing gnustep-back0.24 (0.24.0-4) ... Removing gnustep-back0.24-cairo (0.24.0-4) ... Removing libmagickcore-6.q16-2-extra:amd64 (8:6.8.9.9-5+deb8u12) ... dpkg: libmagickcore-6.q16-2:amd64: dependency problems, but removing anyway as you requested: libgnustep-gui0.24 depends on libmagickcore-6.q16-2 (>= 8:6.8.8.2). libmagickwand-6.q16-2:amd64 depends on libmagickcore-6.q16-2 (>= 8:6.8.9.9). imagemagick-6.q16 depends on libmagickcore-6.q16-2 (>= 8:6.8.8.2). Removing libmagickcore-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... dpkg: libmagickwand-6.q16-2:amd64: dependency problems, but removing anyway as you requested: imagemagick-6.q16 depends on libmagickwand-6.q16-2 (>= 8:6.8.8.2); however: Package libmagickwand-6.q16-2:amd64 is to be removed. Removing libmagickwand-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... dpkg: libgnustep-gui0.24: dependency problems, but removing anyway as you requested: gnustep-back-common depends on libgnustep-gui0.24 (>= 0.24); however: Package libgnustep-gui0.24 is to be removed. Removing libgnustep-gui0.24 (0.24.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 164997 files and directories currently installed.) Preparing to unpack .../imagemagick-common_8%3a6.9.7.4+dfsg-11+deb9u8_all.deb ... Unpacking imagemagick-common (8:6.9.7.4+dfsg-11+deb9u8) over (8:6.8.9.9-5+deb8u12) ... dpkg: warning: unable to delete old directory '/etc/ImageMagick-6': Directory not empty Selecting previously unselected package imagemagick-6-common. Preparing to unpack .../imagemagick-6-common_8%3a6.9.7.4+dfsg-11+deb9u8_all.deb ... Unpacking imagemagick-6-common (8:6.9.7.4+dfsg-11+deb9u8) ... Selecting previously unselected package libmagickcore-6.q16-3:amd64. Preparing to unpack .../libmagickcore-6.q16-3_8%3a6.9.7.4+dfsg-11+deb9u8_amd64.deb ... Unpacking libmagickcore-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Selecting previously unselected package libgnustep-gui0.25. Preparing to unpack .../libgnustep-gui0.25_0.25.0-4+b1_amd64.deb ... Unpacking libgnustep-gui0.25 (0.25.0-4+b1) ... Preparing to unpack .../gnustep-back-common_0.25.0-2_amd64.deb ... Unpacking gnustep-back-common (0.25.0-2) over (0.24.0-4) ... Selecting previously unselected package gnustep-back0.25-cairo. Preparing to unpack .../gnustep-back0.25-cairo_0.25.0-2_amd64.deb ... Unpacking gnustep-back0.25-cairo (0.25.0-2) ... Selecting previously unselected package gnustep-back0.25. Preparing to unpack .../gnustep-back0.25_0.25.0-2_all.deb ... Unpacking gnustep-back0.25 (0.25.0-2) ... Selecting previously unselected package libpgtypes3:amd64. Preparing to unpack .../libpgtypes3_9.6.17-0+deb9u1_amd64.deb ... Unpacking libpgtypes3:amd64 (9.6.17-0+deb9u1) ... Selecting previously unselected package libecpg6:amd64. Preparing to unpack .../libecpg6_9.6.17-0+deb9u1_amd64.deb ... Unpacking libecpg6:amd64 (9.6.17-0+deb9u1) ... Selecting previously unselected package libmariadbclient18:amd64. Preparing to unpack .../libmariadbclient18_10.1.45-0+deb9u1_amd64.deb ... Unpacking libmariadbclient18:amd64 (10.1.45-0+deb9u1) ... Selecting previously unselected package libperformance0.5. Preparing to unpack .../libperformance0.5_0.5.0-1_amd64.deb ... Unpacking libperformance0.5 (0.5.0-1) ... Selecting previously unselected package libsqlclient1.7. Preparing to unpack .../libsqlclient1.7_1.7.3-2.1_amd64.deb ... Unpacking libsqlclient1.7 (1.7.3-2.1) ... Selecting previously unselected package libgnustep-dl2-0d. Preparing to unpack .../libgnustep-dl2-0d_0.12.0-15.1_amd64.deb ... Unpacking libgnustep-dl2-0d (0.12.0-15.1) ... Selecting previously unselected package libsteptalk0. Preparing to unpack .../libsteptalk0_0.10.0-6+b3_amd64.deb ... Unpacking libsteptalk0 (0.10.0-6+b3) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Selecting previously unselected package steptalk. Preparing to unpack .../steptalk_0.10.0-6+b3_amd64.deb ... Unpacking steptalk (0.10.0-6+b3) ... Preparing to unpack .../libball1.4_1.4.3~beta1-3_amd64.deb ... Unpacking libball1.4 (1.4.3~beta1-3) over (1.4.2+20140406-1+b2) ... Preparing to unpack .../theseus_3.3.0-5+b1_amd64.deb ... Unpacking theseus (3.3.0-5+b1) over (3.0.0-1) ... Preparing to unpack .../clonalframe_1.2-5_amd64.deb ... Unpacking clonalframe (1.2-5) over (1.2-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165600 files and directories currently installed.) Removing openms (1.11.1-5) ... Removing topp (1.11.1-5) ... dpkg: libgsl0ldbl: dependency problems, but removing anyway as you requested: python-ball depends on libgsl0ldbl (>= 1.9); however: Package libgsl0ldbl is to be removed. libopenms1.11 depends on libgsl0ldbl (>= 1.9). saint depends on libgsl0ldbl (>= 1.9). libballview1.4 depends on libgsl0ldbl (>= 1.9); however: Package libgsl0ldbl is to be removed. ballview depends on libgsl0ldbl (>= 1.9); however: Package libgsl0ldbl is to be removed. Removing libgsl0ldbl (1.16+dfsg-2) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for menu (2.1.47) ... Processing triggers for mime-support (3.60) ... Selecting previously unselected package libgsl2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165276 files and directories currently installed.) Preparing to unpack .../libgsl2_2.3+dfsg-1_amd64.deb ... Unpacking libgsl2:amd64 (2.3+dfsg-1) ... Preparing to unpack .../python-ball_1.4.3~beta1-3_amd64.deb ... Unpacking python-ball (1.4.3~beta1-3) over (1.4.2+20140406-1+b2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for python-support (1.0.15) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165289 files and directories currently installed.) Removing libopenms1.11 (1.11.1-5) ... dpkg: libboost-date-time1.55.0:amd64: dependency problems, but removing anyway as you requested: mrs depends on libboost-date-time1.55.0. libballview1.4 depends on libboost-date-time1.55.0; however: Package libboost-date-time1.55.0:amd64 is to be removed. ballview depends on libboost-date-time1.55.0; however: Package libboost-date-time1.55.0:amd64 is to be removed. Removing libboost-date-time1.55.0:amd64 (1.55.0+dfsg-3) ... Processing triggers for man-db (2.7.6.1-2) ... Selecting previously unselected package libboost-filesystem1.62.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165271 files and directories currently installed.) Preparing to unpack .../libboost-filesystem1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-filesystem1.62.0:amd64 (1.62.0+dfsg-4) ... Preparing to unpack .../mira-assembler_4.9.6-2_amd64.deb ... Unpacking mira-assembler (4.9.6-2) over (4.0.2-1+b1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../libnettle6_3.3-1+b2_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+b2) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../libhogweed4_3.3-1+b2_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+b2) ... Selecting previously unselected package libgnutls30:amd64. Preparing to unpack .../libgnutls30_3.5.8-5+deb9u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u5) ... Preparing to unpack .../ncbi-blast+_2.6.0-1_amd64.deb ... Unpacking ncbi-blast+ (2.6.0-1) over (2.2.29-3) ... Preparing to unpack .../python-htseq_0.6.1p1-4_amd64.deb ... Unpacking python-htseq (0.6.1p1-4) over (0.5.4p3-2) ... Preparing to unpack .../python-scipy_0.18.1-2_amd64.deb ... Unpacking python-scipy (0.18.1-2) over (0.14.0-2) ... Preparing to unpack .../libstdc++6_6.3.0-18+deb9u1_amd64.deb ... Unpacking libstdc++6:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up libstdc++6:amd64 (6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libboost-system1.62.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165350 files and directories currently installed.) Preparing to unpack .../libboost-system1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-system1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libboost-chrono1.62.0:amd64. Preparing to unpack .../libboost-chrono1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-chrono1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libboost-math1.62.0:amd64. Preparing to unpack .../libboost-math1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-math1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libboost-program-options1.62.0:amd64. Preparing to unpack .../libboost-program-options1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-program-options1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libboost-random1.62.0:amd64. Preparing to unpack .../libboost-random1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-random1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libboost-timer1.62.0:amd64. Preparing to unpack .../libboost-timer1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-timer1.62.0:amd64 (1.62.0+dfsg-4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: liblog4cpp5: dependency problems, but removing anyway as you requested: mrs depends on liblog4cpp5; however: Package liblog4cpp5 is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165385 files and directories currently installed.) Removing liblog4cpp5 (1.0-4) ... Selecting previously unselected package liblog4cpp5v5. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165374 files and directories currently installed.) Preparing to unpack .../liblog4cpp5v5_1.1.1-3_amd64.deb ... Unpacking liblog4cpp5v5 (1.1.1-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: libzeep3.0: dependency problems, but removing anyway as you requested: mrs depends on libzeep3.0; however: Package libzeep3.0 is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165380 files and directories currently installed.) Removing libzeep3.0 (3.0.2-1+b2) ... Selecting previously unselected package libzeep3.0v5. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165373 files and directories currently installed.) Preparing to unpack .../libzeep3.0v5_3.0.2-4+b2_amd64.deb ... Unpacking libzeep3.0v5 (3.0.2-4+b2) ... Preparing to unpack .../mrs_6.0.5+dfsg-2+b2_amd64.deb ... Unpacking mrs (6.0.5+dfsg-2+b2) over (6.0.5+dfsg-1) ... Selecting previously unselected package liblua5.2-0:amd64. Preparing to unpack .../liblua5.2-0_5.2.4-1.1+b2_amd64.deb ... Unpacking liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../libnghttp2-14_1.18.1-1+deb9u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Selecting previously unselected package libssl1.0.2:amd64. Preparing to unpack .../libssl1.0.2_1.0.2u-1~deb9u1_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Preparing to unpack .../apache2-utils_2.4.25-3+deb9u9_amd64.deb ... Unpacking apache2-utils (2.4.25-3+deb9u9) over (2.4.10-10+deb8u12) ... Preparing to unpack .../apache2-data_2.4.25-3+deb9u9_all.deb ... Unpacking apache2-data (2.4.25-3+deb9u9) over (2.4.10-10+deb8u12) ... Preparing to unpack .../apache2_2.4.25-3+deb9u9_amd64.deb ... Restoring lost conffile /etc/apache2/mods-available/cern_meta.load. Restoring lost conffile /etc/apache2/mods-available/imagemap.load. Unpacking apache2 (2.4.25-3+deb9u9) over (2.4.10-10+deb8u12) ... Preparing to unpack .../apache2-bin_2.4.25-3+deb9u9_amd64.deb ... Unpacking apache2-bin (2.4.25-3+deb9u9) over (2.4.10-10+deb8u12) ... Preparing to unpack .../libapache2-mod-perl2_2.0.10-2+deb9u1_amd64.deb ... Unpacking libapache2-mod-perl2 (2.0.10-2+deb9u1) over (2.0.9~1624218-2+deb8u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165437 files and directories currently installed.) Removing libperl5.20 (5.20.2-3+deb8u11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165435 files and directories currently installed.) Preparing to unpack .../libfcgi-perl_0.78-2_amd64.deb ... Unpacking libfcgi-perl (0.78-2) over (0.77-1+deb8u1) ... Preparing to unpack .../libdbd-mysql-perl_4.041-2_amd64.deb ... Unpacking libdbd-mysql-perl (4.041-2) over (4.028-2+deb8u2) ... Preparing to unpack .../libxml-libxml-perl_2.0128+dfsg-1+deb9u1_amd64.deb ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Unpacking libxml-libxml-perl (2.0128+dfsg-1+deb9u1) over (2.0116+dfsg-1+deb8u2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../libssl1.1_1.1.0l-1~deb9u1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Selecting previously unselected package libcrypt-random-seed-perl. Preparing to unpack .../libcrypt-random-seed-perl_0.03-1_all.deb ... Unpacking libcrypt-random-seed-perl (0.03-1) ... Selecting previously unselected package libmath-random-isaac-perl. Preparing to unpack .../libmath-random-isaac-perl_1.003-1_all.deb ... Unpacking libmath-random-isaac-perl (1.003-1) ... Selecting previously unselected package libbytes-random-secure-perl. Preparing to unpack .../libbytes-random-secure-perl_0.28-1_all.deb ... Unpacking libbytes-random-secure-perl (0.28-1) ... Preparing to unpack .../libcrypt-ssleay-perl_0.73.04-2_amd64.deb ... Unpacking libcrypt-ssleay-perl (0.73.04-2) over (0.58-1+b2) ... Preparing to unpack .../libnet-ssleay-perl_1.80-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.80-1) over (1.65-1+deb8u1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Preparing to unpack .../libyaml-libyaml-perl_0.63-2_amd64.deb ... Unpacking libyaml-libyaml-perl (0.63-2) over (0.41-6) ... Preparing to unpack .../libsub-name-perl_0.21-1_amd64.deb ... Unpacking libsub-name-perl (0.21-1) over (0.12-1) ... Preparing to unpack .../libindirect-perl_0.37-1+b1_amd64.deb ... Unpacking libindirect-perl (0.37-1+b1) over (0.33-1) ... Preparing to unpack .../libhtml-parser-perl_3.72-3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3) over (3.71-1+b3) ... Preparing to unpack .../perl-tk_1%3a804.033-1+b3_amd64.deb ... Unpacking perl-tk (1:804.033-1+b3) over (1:804.032-3+b3) ... Preparing to unpack .../libdbd-pg-perl_3.5.3-1+b2_amd64.deb ... Unpacking libdbd-pg-perl (3.5.3-1+b2) over (3.4.2-1) ... Preparing to unpack .../libbit-vector-perl_7.4-1+b2_amd64.deb ... Unpacking libbit-vector-perl (7.4-1+b2) over (7.3-1+b2) ... Preparing to unpack .../libdate-calc-perl_6.4-1_all.deb ... Unpacking libdate-calc-perl (6.4-1) over (6.3-2) ... Preparing to unpack .../libdate-calc-xs-perl_6.4-1+b2_amd64.deb ... Unpacking libdate-calc-xs-perl (6.4-1+b2) over (6.3-2) ... Preparing to unpack .../sqlite3_3.16.2-5+deb9u1_amd64.deb ... Unpacking sqlite3 (3.16.2-5+deb9u1) over (3.8.7.1-1+deb8u2) ... Preparing to unpack .../libsqlite3-0_3.16.2-5+deb9u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u1) over (3.8.7.1-1+deb8u2) ... Preparing to unpack .../libdbd-sqlite3-perl_1.54-1_amd64.deb ... Unpacking libdbd-sqlite3-perl (1.54-1) over (1.44-1) ... Preparing to unpack .../libguard-perl_1.023-1+b2_amd64.deb ... Unpacking libguard-perl (1.023-1+b2) over (1.022-2+b1) ... Preparing to unpack .../libdbi-perl_1.636-1+b1_amd64.deb ... Unpacking libdbi-perl (1.636-1+b1) over (1.631-3+b1) ... Selecting previously unselected package libstaden-read11:amd64. Preparing to unpack .../libstaden-read11_1.14.8-2_amd64.deb ... Unpacking libstaden-read11:amd64 (1.14.8-2) ... Preparing to unpack .../libbio-scf-perl_1.03-3_amd64.deb ... Unpacking libbio-scf-perl (1.03-3) over (1.03-2+b1) ... Preparing to unpack .../libparams-classify-perl_0.013-6+b1_amd64.deb ... Unpacking libparams-classify-perl (0.013-6+b1) over (0.013-4+b2) ... Preparing to unpack .../libparams-util-perl_1.07-3+b1_amd64.deb ... Unpacking libparams-util-perl (1.07-3+b1) over (1.07-2+b1) ... Preparing to unpack .../libpadwalker-perl_2.2-2+b1_amd64.deb ... Unpacking libpadwalker-perl (2.2-2+b1) over (1.98-1+b1) ... Preparing to unpack .../libstring-approx-perl_3.27-1+b4_amd64.deb ... Unpacking libstring-approx-perl (3.27-1+b4) over (3.27-1+b2) ... Preparing to unpack .../libconvert-binary-c-perl_0.78-1+b1_amd64.deb ... Unpacking libconvert-binary-c-perl (0.78-1+b1) over (0.76-3+b2) ... Preparing to unpack .../libmultidimensional-perl_0.012-1+b1_amd64.deb ... Unpacking libmultidimensional-perl (0.012-1+b1) over (0.010-1+b2) ... Preparing to unpack .../libtext-charwidth-perl_0.04-7+b5_amd64.deb ... Unpacking libtext-charwidth-perl (0.04-7+b5) over (0.04-7+b3) ... Preparing to unpack .../libbareword-filehandles-perl_0.004-1+b1_amd64.deb ... Unpacking libbareword-filehandles-perl (0.004-1+b1) over (0.003-1+b2) ... Preparing to unpack .../liblexical-sealrequirehints-perl_0.010-1+b1_amd64.deb ... Unpacking liblexical-sealrequirehints-perl (0.010-1+b1) over (0.007-1+b2) ... Preparing to unpack .../libclone-perl_0.38-2+b1_amd64.deb ... Unpacking libclone-perl (0.38-2+b1) over (0.37-1+b1) ... Preparing to unpack .../perl-base_5.24.1-3+deb9u7_amd64.deb ... Unpacking perl-base (5.24.1-3+deb9u7) over (5.20.2-3+deb8u11) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up perl-base (5.24.1-3+deb9u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165549 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-3+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b1) over (1.05-8+b1) ... Preparing to unpack .../libxml-parser-perl_2.44-2+b1_amd64.deb ... Unpacking libxml-parser-perl (2.44-2+b1) over (2.41-3) ... Preparing to unpack .../libace-perl_1.92-4+b1_amd64.deb ... Unpacking libace-perl (1.92-4+b1) over (1.92-3+b1) ... Preparing to unpack .../libtext-iconv-perl_1.7-5+b4_amd64.deb ... Unpacking libtext-iconv-perl (1.7-5+b4) over (1.7-5+b2) ... Preparing to unpack .../libxml-libxslt-perl_1.95-1+b1_amd64.deb ... Unpacking libxml-libxslt-perl (1.95-1+b1) over (1.92-1+b1) ... Preparing to unpack .../libbsd-resource-perl_1.2910-1+b1_amd64.deb ... Unpacking libbsd-resource-perl (1.2910-1+b1) over (1.2907-1+b2) ... Preparing to unpack .../libalgorithm-diff-xs-perl_0.04-4+b2_amd64.deb ... Unpacking libalgorithm-diff-xs-perl (0.04-4+b2) over (0.04-3+b1) ... Preparing to unpack .../libfile-fcntllock-perl_0.22-3+b2_amd64.deb ... Unpacking libfile-fcntllock-perl (0.22-3+b2) over (0.22-1+b1) ... Preparing to unpack .../libterm-readkey-perl_2.37-1_amd64.deb ... Unpacking libterm-readkey-perl (2.37-1) over (2.32-1+b1) ... Preparing to unpack .../libdevel-caller-perl_2.06-1+b4_amd64.deb ... Unpacking libdevel-caller-perl (2.06-1+b4) over (2.06-1+b2) ... Preparing to unpack .../libunicode-map-perl_0.112-11+b3_amd64.deb ... Unpacking libunicode-map-perl (0.112-11+b3) over (0.112-11+b1) ... Preparing to unpack .../libtype-tiny-xs-perl_0.012-1+b2_amd64.deb ... Unpacking libtype-tiny-xs-perl (0.012-1+b2) over (0.010-1) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../libapparmor1_2.11.0-3+deb9u2_amd64.deb ... Unpacking libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165557 files and directories currently installed.) Preparing to unpack .../dbus_1.10.32-0+deb9u1_amd64.deb ... Unpacking dbus (1.10.32-0+deb9u1) over (1.8.22-0+deb8u1) ... Preparing to unpack .../libdbus-1-3_1.10.32-0+deb9u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.10.32-0+deb9u1) over (1.8.22-0+deb8u1) ... Preparing to unpack .../libnet-dbus-perl_1.1.0-4+b1_amd64.deb ... Unpacking libnet-dbus-perl (1.1.0-4+b1) over (1.0.0-2+b2) ... Preparing to unpack .../libtext-soundex-perl_3.4-1+b4_amd64.deb ... Unpacking libtext-soundex-perl (3.4-1+b4) over (3.4-1+b2) ... Selecting previously unselected package libtypes-serialiser-perl. Preparing to unpack .../libtypes-serialiser-perl_1.0-1_all.deb ... Unpacking libtypes-serialiser-perl (1.0-1) ... Preparing to unpack .../libjson-xs-perl_3.030-1_amd64.deb ... Unpacking libjson-xs-perl (3.030-1) over (2.340-1+b2) ... Preparing to unpack .../libev-perl_4.22-1+b1_amd64.deb ... Unpacking libev-perl (4.22-1+b1) over (4.18-1) ... Preparing to unpack .../libossp-uuid-perl_1.6.2-1.5+b4_amd64.deb ... Unpacking libossp-uuid-perl (1.6.2-1.5+b4) over (1.6.2-1.5+b1) ... Preparing to unpack .../libb-hooks-op-check-perl_0.19-3+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.19-3+b1) over (0.19-2+b1) ... Preparing to unpack .../libasync-interrupt-perl_1.21-1+b2_amd64.deb ... Unpacking libasync-interrupt-perl (1.21-1+b2) over (1.20-1+b1) ... Preparing to unpack .../libperlio-gzip-perl_0.19-1+b2_amd64.deb ... Unpacking libperlio-gzip-perl (0.19-1+b2) over (0.18-3+b1) ... Preparing to unpack .../libio-pty-perl_1%3a1.08-1.1+b2_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b2) over (1:1.08-1+b4) ... Preparing to unpack .../libanyevent-perl_7.130-2_amd64.deb ... Unpacking libanyevent-perl (7.130-2) over (7.070-3) ... Preparing to unpack .../libmath-tamuanova-perl_1.0.2-2+b4_amd64.deb ... Unpacking libmath-tamuanova-perl (1.0.2-2+b4) over (1.0.2-2+b2) ... Preparing to unpack .../libipc-sharelite-perl_0.17-4_amd64.deb ... Unpacking libipc-sharelite-perl (0.17-4) over (0.17-3+b2) ... Preparing to unpack .../libmath-random-mt-perl_1.17-1+b2_amd64.deb ... Unpacking libmath-random-mt-perl (1.17-1+b2) over (1.16-1+b2) ... Preparing to unpack .../libclass-c3-xs-perl_0.14-1+b1_amd64.deb ... Unpacking libclass-c3-xs-perl (0.14-1+b1) over (0.13-2+b1) ... Preparing to unpack .../libdevel-lexalias-perl_0.05-1+b4_amd64.deb ... Unpacking libdevel-lexalias-perl (0.05-1+b4) over (0.05-1+b2) ... Preparing to unpack .../liblist-moreutils-perl_0.416-1+b1_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b1) over (0.33-2+b1) ... Preparing to unpack .../libai-fann-perl_0.10-3+b2_amd64.deb ... Unpacking libai-fann-perl (0.10-3+b2) over (0.10-2+b1) ... Selecting previously unselected package libscalar-list-utils-perl. Preparing to unpack .../libscalar-list-utils-perl_1%3a1.47-1_amd64.deb ... Unpacking libscalar-list-utils-perl (1:1.47-1) ... Preparing to unpack .../liblist-allutils-perl_0.12-1_all.deb ... Unpacking liblist-allutils-perl (0.12-1) over (0.09-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../libipc-system-simple-perl_1.25-3_all.deb ... Unpacking libipc-system-simple-perl (1.25-3) ... Preparing to unpack .../libfile-basedir-perl_0.07-1_all.deb ... Unpacking libfile-basedir-perl (0.07-1) over (0.03-1) ... Preparing to unpack .../libgcc1_1%3a6.3.0-18+deb9u1_amd64.deb ... Unpacking libgcc1:amd64 (1:6.3.0-18+deb9u1) over (1:4.9.2-10+deb8u1) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libgcc1:amd64 (1:6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165601 files and directories currently installed.) Preparing to unpack .../libqt4-opengl_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-opengl:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libqt4-svg_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-svg:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libqtgui4_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqtgui4:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Selecting previously unselected package liblz4-1:amd64. Preparing to unpack .../liblz4-1_0.0~r131-2+b1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libip4tc0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165610 files and directories currently installed.) Preparing to unpack .../libip4tc0_1.6.0+snapshot20161117-6_amd64.deb ... Unpacking libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165616 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2.1+deb9u1_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libmnl0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165622 files and directories currently installed.) Preparing to unpack .../libmnl0_1.0.4-2_amd64.deb ... Unpacking libmnl0:amd64 (1.0.4-2) ... Preparing to unpack .../iproute2_4.9.0-1+deb9u1_amd64.deb ... Unpacking iproute2 (4.9.0-1+deb9u1) over (3.16.0-2) ... Preparing to unpack .../libsystemd0_232-25+deb9u12_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u12) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up libsystemd0:amd64 (232-25+deb9u12) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165674 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u12_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u12) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libudev1:amd64 (232-25+deb9u12) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: considering deconfiguration of ifupdown, which would be broken by installation of udev ... dpkg: yes, will deconfigure ifupdown (broken by udev) dpkg: considering deconfiguration of systemd, which would be broken by installation of udev ... dpkg: yes, will deconfigure systemd (broken by udev) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165673 files and directories currently installed.) Preparing to unpack .../udev_232-25+deb9u12_amd64.deb ... De-configuring systemd (215-17+deb8u7) ... De-configuring ifupdown (0.7.53.1) ... Unpacking udev (232-25+deb9u12) over (215-17+deb8u7) ... Replacing files in old package systemd (215-17+deb8u7) ... dpkg: warning: unable to delete old directory '/etc/modprobe.d': Directory not empty Preparing to unpack .../ifupdown_0.8.19_amd64.deb ... Unpacking ifupdown (0.8.19) over (0.7.53.1) ... Replacing files in old package systemd (215-17+deb8u7) ... Preparing to unpack .../systemd_232-25+deb9u12_amd64.deb ... Unpacking systemd (232-25+deb9u12) over (215-17+deb8u7) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up systemd (232-25+deb9u12) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/timesyncd.conf ... Installing new version of config file /etc/systemd/user.conf ... Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service. addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.machine1.conf ... Removing obsolete conffile /etc/systemd/bootchart.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165734 files and directories currently installed.) Preparing to unpack .../libpam-systemd_232-25+deb9u12_amd64.deb ... Unpacking libpam-systemd:amd64 (232-25+deb9u12) over (215-17+deb8u7) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../libprocps6_2%3a3.3.12-3+deb9u1_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165741 files and directories currently installed.) Preparing to unpack .../procps_2%3a3.3.12-3+deb9u1_amd64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-3+deb9u1) over (2:3.3.9-9+deb8u1) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for menu (2.1.47) ... Setting up procps (2:3.3.12-3+deb9u1) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Processing triggers for systemd (232-25+deb9u12) ... Processing triggers for menu (2.1.47) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165743 files and directories currently installed.) Preparing to unpack .../libqt4-xmlpatterns_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-xmlpatterns:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libqt4-network_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-network:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libqtdbus4_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqtdbus4:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libqt4-test_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-test:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libqt4-sql-mysql_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-sql-mysql:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libqt4-sql_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-sql:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libqt4-xml_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-xml:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libqtcore4_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqtcore4:amd64 (4:4.8.7+dfsg-11) over (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Preparing to unpack .../libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Selecting previously unselected package libopenblas-base. Preparing to unpack .../libopenblas-base_0.2.19-3_amd64.deb ... Unpacking libopenblas-base (0.2.19-3) ... Preparing to unpack .../python2.7-dev_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7-dev (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../libpython2.7-dev_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-dev:amd64 (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../python2.7_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7 (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../libpython2.7_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7:amd64 (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../libpython2.7-stdlib_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../libpython2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Preparing to unpack .../python2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2+deb9u3) over (2.7.9-2+deb8u1) ... Selecting previously unselected package libopus0:amd64. Preparing to unpack .../libopus0_1.2~alpha2-1_amd64.deb ... Unpacking libopus0:amd64 (1.2~alpha2-1) ... Preparing to unpack .../gstreamer1.0-plugins-base_1.10.4-1+deb9u1_amd64.deb ... Unpacking gstreamer1.0-plugins-base:amd64 (1.10.4-1+deb9u1) over (1.4.4-2+deb8u1) ... Preparing to unpack .../libgstreamer1.0-0_1.10.4-1_amd64.deb ... Unpacking libgstreamer1.0-0:amd64 (1.10.4-1) over (1.4.4-2+deb8u1) ... Preparing to unpack .../libgstreamer-plugins-base1.0-0_1.10.4-1+deb9u1_amd64.deb ... Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.10.4-1+deb9u1) over (1.4.4-2+deb8u1) ... Preparing to unpack .../libqtwebkit4_2.3.4.dfsg-9.1_amd64.deb ... Unpacking libqtwebkit4:amd64 (2.3.4.dfsg-9.1) over (2.3.4.dfsg-3) ... Preparing to unpack .../libballview1.4_1.4.3~beta1-3_amd64.deb ... Unpacking libballview1.4 (1.4.3~beta1-3) over (1.4.2+20140406-1+b2) ... Preparing to unpack .../python-minimal_2.7.13-2_amd64.deb ... Unpacking python-minimal (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../python-all-dev_2.7.13-2_amd64.deb ... Unpacking python-all-dev (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../python-all_2.7.13-2_amd64.deb ... Unpacking python-all (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../python-dev_2.7.13-2_amd64.deb ... Unpacking python-dev (2.7.13-2) over (2.7.9-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for mime-support (3.60) ... Processing triggers for menu (2.1.47) ... Setting up libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Setting up python2.7-minimal (2.7.13-2+deb9u3) ... Setting up python-minimal (2.7.13-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165763 files and directories currently installed.) Preparing to unpack .../python_2.7.13-2_amd64.deb ... Unpacking python (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../libpython-stdlib_2.7.13-2_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../libpython-all-dev_2.7.13-2_amd64.deb ... Unpacking libpython-all-dev:amd64 (2.7.13-2) over (2.7.9-1) ... Preparing to unpack .../libpython-dev_2.7.13-2_amd64.deb ... Unpacking libpython-dev:amd64 (2.7.13-2) over (2.7.9-1) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../libnl-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-3-200:amd64 (3.2.27-2) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../libnl-route-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.2.27-2) ... Preparing to unpack .../libibverbs1_1.2.1-2_amd64.deb ... Unpacking libibverbs1 (1.2.1-2) over (1.1.8-1.1) ... Preparing to unpack .../libxml2_2.9.4+dfsg1-2.2+deb9u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) over (2.9.1+dfsg1-5+deb8u6) ... Preparing to unpack .../libgmp-dev_2%3a6.1.2+dfsg-1_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.1.2+dfsg-1) over (2:6.0.0+dfsg-6) ... Preparing to unpack .../libgmpxx4ldbl_2%3a6.1.2+dfsg-1_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.1.2+dfsg-1) over (2:6.0.0+dfsg-6) ... Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-1) over (2:6.0.0+dfsg-6) ... Preparing to unpack .../libavahi-client3_0.6.32-2_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.32-2) over (0.6.31-5) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../libgc1c2_1%3a7.4.2-8_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.4.2-8) ... Preparing to unpack .../libobjc4_6.3.0-18+deb9u1_amd64.deb ... Unpacking libobjc4:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgnustep-base1.24_1.24.9-3.1+deb9u1_amd64.deb ... Unpacking libgnustep-base1.24 (1.24.9-3.1+deb9u1) over (1.24.7-1) ... Preparing to unpack .../libaspell15_0.60.7~20110707-3+b2_amd64.deb ... Unpacking libaspell15:amd64 (0.60.7~20110707-3+b2) over (0.60.7~20110707-1.3) ... Preparing to unpack .../aspell_0.60.7~20110707-3+b2_amd64.deb ... Unpacking aspell (0.60.7~20110707-3+b2) over (0.60.7~20110707-1.3) ... Preparing to unpack .../libcupsimage2_2.2.1-8+deb9u6_amd64.deb ... Unpacking libcupsimage2:amd64 (2.2.1-8+deb9u6) over (1.7.5-11+deb8u2) ... Preparing to unpack .../libcups2_2.2.1-8+deb9u6_amd64.deb ... Unpacking libcups2:amd64 (2.2.1-8+deb9u6) over (1.7.5-11+deb8u2) ... Preparing to unpack .../libgomp1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgomp1:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libcairo2_1.14.8-1_amd64.deb ... Unpacking libcairo2:amd64 (1.14.8-1) over (1.14.0-2.1+deb8u2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../libldap-common_2.4.44+dfsg-5+deb9u4_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5+deb9u4) ... Replacing files in old package libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Preparing to unpack .../libsasl2-2_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) over (2.1.26.dfsg1-13+deb8u1) ... Preparing to unpack .../libldap-2.4-2_2.4.44+dfsg-5+deb9u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) over (2.4.40+dfsg-1+deb8u4) ... Preparing to unpack .../libpq5_9.6.17-0+deb9u1_amd64.deb ... Unpacking libpq5:amd64 (9.6.17-0+deb9u1) over (9.4.18-0+deb8u1) ... Preparing to unpack .../clustalo_1.2.4-1_amd64.deb ... Unpacking clustalo (1.2.4-1) over (1.2.1-1) ... Preparing to unpack .../libxm4_2.3.4-13_amd64.deb ... Unpacking libxm4:amd64 (2.3.4-13) over (2.3.4-6+deb8u1) ... Preparing to unpack .../libmotif-common_2.3.4-13_all.deb ... Unpacking libmotif-common (2.3.4-13) over (2.3.4-6+deb8u1) ... Preparing to unpack .../ncbi-tools-x11_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... Unpacking ncbi-tools-x11 (6.1.20170106+dfsg1-0+deb9u1) over (6.1.20120620-8) ... Preparing to unpack .../libvibrant6b_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... Unpacking libvibrant6b:amd64 (6.1.20170106+dfsg1-0+deb9u1) over (6.1.20120620-8) ... Preparing to unpack .../blast2_1%3a2.6.0-1_all.deb ... Unpacking blast2 (1:2.6.0-1) over (1:2.2.26.20120620-8) ... Selecting previously unselected package ncbi-blast+-legacy. Preparing to unpack .../ncbi-blast+-legacy_2.6.0-1_all.deb ... Unpacking ncbi-blast+-legacy (2.6.0-1) ... Preparing to unpack .../ncbi-tools-bin_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... Unpacking ncbi-tools-bin (6.1.20170106+dfsg1-0+deb9u1) over (6.1.20120620-8) ... Preparing to unpack .../libncbi6_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... Unpacking libncbi6:amd64 (6.1.20170106+dfsg1-0+deb9u1) over (6.1.20120620-8) ... Preparing to unpack .../ncbi-data_6.1.20170106+dfsg1-0+deb9u1_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-0+deb9u1) over (6.1.20120620-8) ... Selecting previously unselected package libpcre16-3:amd64. Preparing to unpack .../libpcre16-3_2%3a8.39-3_amd64.deb ... Unpacking libpcre16-3:amd64 (2:8.39-3) ... Selecting previously unselected package libpcre32-3:amd64. Preparing to unpack .../libpcre32-3_2%3a8.39-3_amd64.deb ... Unpacking libpcre32-3:amd64 (2:8.39-3) ... Preparing to unpack .../libpcre3-dev_2%3a8.39-3_amd64.deb ... Unpacking libpcre3-dev:amd64 (2:8.39-3) over (2:8.35-3.3+deb8u4) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for mime-support (3.60) ... Processing triggers for menu (2.1.47) ... Processing triggers for hicolor-icon-theme (0.15-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165784 files and directories currently installed.) Removing libpcrecpp0:amd64 (2:8.35-3.3+deb8u4) ... Selecting previously unselected package libpcrecpp0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165775 files and directories currently installed.) Preparing to unpack .../libpcrecpp0v5_2%3a8.39-3_amd64.deb ... Unpacking libpcrecpp0v5:amd64 (2:8.39-3) ... Preparing to unpack .../libpcre3_2%3a8.39-3_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-3) over (2:8.35-3.3+deb8u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up libpcre3:amd64 (2:8.39-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165784 files and directories currently installed.) Preparing to unpack .../libaprutil1-ldap_1.5.4-3_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.5.4-3) over (1.5.4-1) ... Preparing to unpack .../libaprutil1-dbd-sqlite3_1.5.4-3_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) over (1.5.4-1) ... Preparing to unpack .../libaprutil1_1.5.4-3_amd64.deb ... Unpacking libaprutil1:amd64 (1.5.4-3) over (1.5.4-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../libidn2-0_0.16-1+deb9u1_amd64.deb ... Unpacking libidn2-0:amd64 (0.16-1+deb9u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../libpsl5_0.17.0-3_amd64.deb ... Unpacking libpsl5:amd64 (0.17.0-3) ... Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-1+b1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) over (2.4+20150115.gita107cef-1+deb8u1) ... Preparing to unpack .../libcurl3-gnutls_7.52.1-5+deb9u10_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) over (7.38.0-4+deb8u11) ... Preparing to unpack .../libossp-uuid16_1.6.2-1.5+b4_amd64.deb ... Unpacking libossp-uuid16:amd64 (1.6.2-1.5+b4) over (1.6.2-1.5+b1) ... Preparing to unpack .../archives/init_1.48_amd64.deb ... Unpacking init (1.48) over (1.22) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up init (1.48) ... Selecting previously unselected package libpython3.5-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165802 files and directories currently installed.) Preparing to unpack .../libpython3.5-minimal_3.5.3-1+deb9u1_amd64.deb ... Unpacking libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... Selecting previously unselected package python3.5-minimal. Preparing to unpack .../python3.5-minimal_3.5.3-1+deb9u1_amd64.deb ... Unpacking python3.5-minimal (3.5.3-1+deb9u1) ... Selecting previously unselected package libpython3.5-stdlib:amd64. Preparing to unpack .../libpython3.5-stdlib_3.5.3-1+deb9u1_amd64.deb ... Unpacking libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Selecting previously unselected package python3.5. Preparing to unpack .../python3.5_3.5.3-1+deb9u1_amd64.deb ... Unpacking python3.5 (3.5.3-1+deb9u1) ... Preparing to unpack .../python3-minimal_3.5.3-1_amd64.deb ... Unpacking python3-minimal (3.5.3-1) over (3.4.2-2) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for mime-support (3.60) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... Setting up python3.5-minimal (3.5.3-1+deb9u1) ... update-binfmts: warning: python3.5 already enabled in kernel. Setting up python3-minimal (3.5.3-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 166636 files and directories currently installed.) Preparing to unpack .../python3_3.5.3-1_amd64.deb ... Unpacking python3 (3.5.3-1) over (3.4.2-2) ... Preparing to unpack .../libpython3-stdlib_3.5.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.5.3-1) over (3.4.2-2) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 166636 files and directories currently installed.) Removing python3.4 (3.4.2-1) ... Removing libpython3.4-stdlib:amd64 (3.4.2-1) ... dpkg-query: no packages found matching pkgname Removing python3.4-minimal (3.4.2-1) ... Removing libpython3.4-minimal:amd64 (3.4.2-1) ... dpkg-query: no packages found matching pkgname Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for menu (2.1.47) ... Processing triggers for mime-support (3.60) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165817 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20161106-2_amd64.deb ... Unpacking findutils (4.6.0+git+20161106-2) over (4.4.2-9+b1) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up findutils (4.6.0+git+20161106-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165815 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.10_amd64.deb ... Unpacking apt (1.4.10) over (1.0.9.8.4) ... Selecting previously unselected package libapt-pkg5.0:amd64. Preparing to unpack .../libapt-pkg5.0_1.4.10_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up libapt-pkg5.0:amd64 (1.4.10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165870 files and directories currently installed.) Preparing to unpack .../libptexenc1_2016.20160513.41080.dfsg-2+deb9u1_amd64.deb ... Unpacking libptexenc1:amd64 (2016.20160513.41080.dfsg-2+deb9u1) over (2014.20140926.35254-6) ... Preparing to unpack .../libkpathsea6_2016.20160513.41080.dfsg-2+deb9u1_amd64.deb ... Unpacking libkpathsea6:amd64 (2016.20160513.41080.dfsg-2+deb9u1) over (2014.20140926.35254-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 165870 files and directories currently installed.) Removing texlive-extra-utils (2014.20141024-1) ... Removing texlive-font-utils (2014.20141024-1) ... Removing texlive-fonts-extra (2014.20141024-1) ... dpkg: texlive-binaries: dependency problems, but removing anyway as you requested: texlive-math-extra depends on texlive-binaries (>= 2014.20140512.33982). texlive-latex-base depends on texlive-binaries (>= 2014.20140512.33982). texlive-base depends on texlive-binaries (>= 2014.20140512.33982). texlive-pictures depends on texlive-binaries (>= 2014.20140512.33982). texlive-latex-extra depends on texlive-binaries (>= 2014.20140512.33982). texlive-latex-recommended depends on texlive-binaries (>= 2014.20140512.33982). texlive-pstricks depends on texlive-binaries (>= 2014.20140512.33982). tipa depends on texlive-base-bin; however: Package texlive-base-bin is not installed. Package texlive-binaries which provides texlive-base-bin is to be removed. dvipng depends on texlive-base-bin; however: Package texlive-base-bin is not installed. Package texlive-binaries which provides texlive-base-bin is to be removed. Removing texlive-binaries (2014.20140926.35254-6) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for tex-common (5.03) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 127915 files and directories currently installed.) Preparing to unpack .../texlive-latex-extra-doc_2016.20170123-5_all.deb ... Unpacking texlive-latex-extra-doc (2016.20170123-5) over (2014.20141024-1) ... Preparing to unpack .../texlive-fonts-extra-doc_2016.20170123-5_all.deb ... Unpacking texlive-fonts-extra-doc (2016.20170123-5) over (2014.20141024-1) ... dpkg: texlive-fonts-recommended: dependency problems, but removing anyway as you requested: texlive-math-extra depends on texlive-fonts-recommended (>= 2014); however: Package texlive-fonts-recommended is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 128725 files and directories currently installed.) Removing texlive-fonts-recommended (2014.20141024-2+deb8u1) ... dpkg: fontconfig: dependency problems, but processing triggers anyway as you requested: fontconfig depends on libfreetype6 (>= 2.2.1); however: Package libfreetype6:amd64 is not configured yet. Processing triggers for fontconfig (2.11.0-6.7+b1) ... Processing triggers for tex-common (5.03) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125111 files and directories currently installed.) Preparing to unpack .../texlive-fonts-recommended-doc_2016.20170123-5_all.deb ... Unpacking texlive-fonts-recommended-doc (2016.20170123-5) over (2014.20141024-2+deb8u1) ... dpkg: texlive-generic-recommended: dependency problems, but removing anyway as you requested: prerex depends on texlive-generic-recommended. texlive-pstricks depends on texlive-generic-recommended (>= 2014). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125099 files and directories currently installed.) Removing texlive-generic-recommended (2014.20141024-2+deb8u1) ... dpkg: texlive-latex-base: dependency problems, but removing anyway as you requested: texlive-math-extra depends on texlive-latex-base (>= 2014); however: Package texlive-latex-base is to be removed. prerex depends on texlive-latex-base; however: Package texlive-latex-base is to be removed. tipa depends on texlive-latex-base. prosper depends on texlive-latex-base. texlive-latex-recommended depends on texlive-latex-base (>= 2014); however: Package texlive-latex-base is to be removed. Removing texlive-latex-base (2014.20141024-2+deb8u1) ... Processing triggers for tex-common (5.03) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 123902 files and directories currently installed.) Preparing to unpack .../texlive-latex-base-doc_2016.20170123-5_all.deb ... Unpacking texlive-latex-base-doc (2016.20170123-5) over (2014.20141024-2+deb8u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 123934 files and directories currently installed.) Removing texlive-latex-extra (2014.20141024-1) ... Removing texlive-latex-recommended-doc (2014.20141024-2+deb8u1) ... dpkg: texlive-latex-recommended: dependency problems, but removing anyway as you requested: texlive-pictures depends on texlive-latex-recommended (>= 2014). prosper depends on texlive-latex-recommended; however: Package texlive-latex-recommended is to be removed. Removing texlive-latex-recommended (2014.20141024-2+deb8u1) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for tex-common (5.03) ... Selecting previously unselected package texlive-latex-recommended-doc. dpkg: considering deconfiguration of texlive-math-extra, which would be broken by installation of texlive-latex-recommended-doc ... dpkg: yes, will deconfigure texlive-math-extra (broken by texlive-latex-recommended-doc) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 118441 files and directories currently installed.) Preparing to unpack .../texlive-latex-recommended-doc_2016.20170123-5_all.deb ... De-configuring texlive-math-extra (2014.20141024-1) ... Unpacking texlive-latex-recommended-doc (2016.20170123-5) ... Replacing files in old package texlive-math-extra (2014.20141024-1) ... dpkg: texlive-pictures: dependency problems, but removing anyway as you requested: prerex depends on texlive-pictures. texlive-pstricks depends on texlive-pictures (>= 2014); however: Package texlive-pictures is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 118994 files and directories currently installed.) Removing texlive-pictures (2014.20141024-2+deb8u1) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for tex-common (5.03) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117672 files and directories currently installed.) Preparing to unpack .../texlive-pictures-doc_2016.20170123-5_all.deb ... Unpacking texlive-pictures-doc (2016.20170123-5) over (2014.20141024-2+deb8u1) ... dpkg: texlive-pstricks: dependency problems, but removing anyway as you requested: prosper depends on texlive-pstricks; however: Package texlive-pstricks is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117895 files and directories currently installed.) Removing texlive-pstricks (2014.20141024-1) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for tex-common (5.03) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117239 files and directories currently installed.) Preparing to unpack .../texlive-pstricks-doc_2016.20170123-5_all.deb ... Unpacking texlive-pstricks-doc (2016.20170123-5) over (2014.20141024-1) ... dpkg: warning: ignoring request to remove texlive-latex-recommended, only the config files of which are on the system; use --purge to remove them too Selecting previously unselected package texlive-latex-recommended. dpkg: considering deconfiguration of texlive-base, which would be broken by installation of texlive-latex-recommended ... dpkg: yes, will deconfigure texlive-base (broken by texlive-latex-recommended) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117323 files and directories currently installed.) Preparing to unpack .../texlive-latex-recommended_2016.20170123-5_all.deb ... De-configuring texlive-base (2014.20141024-2+deb8u1) ... Unpacking texlive-latex-recommended (2016.20170123-5) ... Replacing files in old package texlive-math-extra (2014.20141024-1) ... Preparing to unpack .../tex-common_6.06_all.deb ... Unpacking tex-common (6.06) over (5.03) ... dpkg: warning: unable to delete old directory '/etc/texmf/hyphen.d': Directory not empty Preparing to unpack .../texlive-base_2016.20170123-5_all.deb ... Unpacking texlive-base (2016.20170123-5) over (2014.20141024-2+deb8u1) ... Selecting previously unselected package texlive-extra-utils. Preparing to unpack .../texlive-extra-utils_2016.20170123-5_all.deb ... Unpacking texlive-extra-utils (2016.20170123-5) ... Selecting previously unselected package texlive-font-utils. Preparing to unpack .../texlive-font-utils_2016.20170123-5_all.deb ... Unpacking texlive-font-utils (2016.20170123-5) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../texlive-latex-extra_2016.20170123-5_all.deb ... Unpacking texlive-latex-extra (2016.20170123-5) ... Selecting previously unselected package texlive-fonts-extra. Preparing to unpack .../texlive-fonts-extra_2016.20170123-5_all.deb ... Unpacking texlive-fonts-extra (2016.20170123-5) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../texlive-fonts-recommended_2016.20170123-5_all.deb ... Unpacking texlive-fonts-recommended (2016.20170123-5) ... Selecting previously unselected package texlive-generic-recommended. Preparing to unpack .../texlive-generic-recommended_2016.20170123-5_all.deb ... Unpacking texlive-generic-recommended (2016.20170123-5) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../texlive-latex-base_2016.20170123-5_all.deb ... Unpacking texlive-latex-base (2016.20170123-5) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for mime-support (3.60) ... Processing triggers for menu (2.1.47) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 175759 files and directories currently installed.) Removing texlive-math-extra (2014.20141024-1) ... Processing triggers for man-db (2.7.6.1-2) ... Selecting previously unselected package texlive-pictures. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 175220 files and directories currently installed.) Preparing to unpack .../texlive-pictures_2016.20170123-5_all.deb ... Unpacking texlive-pictures (2016.20170123-5) ... Selecting previously unselected package texlive-pstricks. Preparing to unpack .../texlive-pstricks_2016.20170123-5_all.deb ... Unpacking texlive-pstricks (2016.20170123-5) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../texlive-binaries_2016.20160513.41080.dfsg-2+deb9u1_amd64.deb ... Unpacking texlive-binaries (2016.20160513.41080.dfsg-2+deb9u1) ... Selecting previously unselected package libtexlua52:amd64. Preparing to unpack .../libtexlua52_2016.20160513.41080.dfsg-2+deb9u1_amd64.deb ... Unpacking libtexlua52:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Selecting previously unselected package libtexluajit2:amd64. Preparing to unpack .../libtexluajit2_2016.20160513.41080.dfsg-2+deb9u1_amd64.deb ... Unpacking libtexluajit2:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Selecting previously unselected package t1utils. Preparing to unpack .../t1utils_1.39-2_amd64.deb ... Unpacking t1utils (1.39-2) ... Preparing to unpack .../ghostscript_9.26a~dfsg-0+deb9u6_amd64.deb ... Unpacking ghostscript (9.26a~dfsg-0+deb9u6) over (9.06~dfsg-2+deb8u7) ... Preparing to unpack .../libgs9_9.26a~dfsg-0+deb9u6_amd64.deb ... Unpacking libgs9:amd64 (9.26a~dfsg-0+deb9u6) over (9.06~dfsg-2+deb8u7) ... Preparing to unpack .../libgs9-common_9.26a~dfsg-0+deb9u6_all.deb ... Unpacking libgs9-common (9.26a~dfsg-0+deb9u6) over (9.06~dfsg-2+deb8u7) ... Preparing to unpack .../libharfbuzz-icu0_1.4.2-1_amd64.deb ... Unpacking libharfbuzz-icu0:amd64 (1.4.2-1) over (0.9.35-2) ... Selecting previously unselected package libpoppler64:amd64. Preparing to unpack .../libpoppler64_0.48.0-2+deb9u2_amd64.deb ... Unpacking libpoppler64:amd64 (0.48.0-2+deb9u2) ... Preparing to unpack .../preview-latex-style_11.90-1_all.deb ... Unpacking preview-latex-style (11.90-1) over (11.87-3+deb8u1) ... Preparing to unpack .../fonts-lmodern_2.004.5-3_all.deb ... Unpacking fonts-lmodern (2.004.5-3) over (2.004.4-5) ... Preparing to unpack .../lmodern_2.004.5-3_all.deb ... Unpacking lmodern (2.004.5-3) over (2.004.4-5) ... Selecting previously unselected package fonts-croscore. Preparing to unpack .../fonts-croscore_20161116-1_all.deb ... Unpacking fonts-croscore (20161116-1) ... Selecting previously unselected package fonts-noto-hinted. Preparing to unpack .../fonts-noto-hinted_20161116-1_all.deb ... Unpacking fonts-noto-hinted (20161116-1) ... Selecting previously unselected package fonts-roboto-hinted. Preparing to unpack .../fonts-roboto-hinted_2%3a0~20160106-2_all.deb ... Unpacking fonts-roboto-hinted (2:0~20160106-2) ... Selecting previously unselected package fonts-sil-gentiumplus. Preparing to unpack .../fonts-sil-gentiumplus_5.000-1_all.deb ... Unpacking fonts-sil-gentiumplus (5.000-1) ... Selecting previously unselected package fonts-sil-gentiumplus-compact. Preparing to unpack .../fonts-sil-gentiumplus-compact_5.000-2_all.deb ... Unpacking fonts-sil-gentiumplus-compact (5.000-2) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 178066 files and directories currently installed.) Removing fonts-droid (1:4.4.4r2-6) ... Selecting previously unselected package libdouble-conversion1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 178032 files and directories currently installed.) Preparing to unpack .../libdouble-conversion1_2.0.1-4_amd64.deb ... Unpacking libdouble-conversion1:amd64 (2.0.1-4) ... Selecting previously unselected package libqt5core5a:amd64. Preparing to unpack .../libqt5core5a_5.7.1+dfsg-3+deb9u2_amd64.deb ... Unpacking libqt5core5a:amd64 (5.7.1+dfsg-3+deb9u2) ... Selecting previously unselected package libwayland-server0:amd64. Preparing to unpack .../libwayland-server0_1.12.0-1+deb9u1_amd64.deb ... Unpacking libwayland-server0:amd64 (1.12.0-1+deb9u1) ... Selecting previously unselected package libgbm1:amd64. Preparing to unpack .../libgbm1_13.0.6-1+b2_amd64.deb ... Unpacking libgbm1:amd64 (13.0.6-1+b2) ... Selecting previously unselected package libxcb-xfixes0:amd64. Preparing to unpack .../libxcb-xfixes0_1.12-1_amd64.deb ... Unpacking libxcb-xfixes0:amd64 (1.12-1) ... Selecting previously unselected package libegl1-mesa:amd64. Preparing to unpack .../libegl1-mesa_13.0.6-1+b2_amd64.deb ... Unpacking libegl1-mesa:amd64 (13.0.6-1+b2) ... Selecting previously unselected package libevdev2:amd64. Preparing to unpack .../libevdev2_1.5.6+dfsg-1_amd64.deb ... Unpacking libevdev2:amd64 (1.5.6+dfsg-1) ... Selecting previously unselected package libmtdev1:amd64. Preparing to unpack .../libmtdev1_1.1.5-1+b1_amd64.deb ... Unpacking libmtdev1:amd64 (1.1.5-1+b1) ... Selecting previously unselected package libwacom-common. Preparing to unpack .../libwacom-common_0.22-1_all.deb ... Unpacking libwacom-common (0.22-1) ... Selecting previously unselected package libwacom2:amd64. Preparing to unpack .../libwacom2_0.22-1+b1_amd64.deb ... Unpacking libwacom2:amd64 (0.22-1+b1) ... Selecting previously unselected package libinput-bin. Preparing to unpack .../libinput-bin_1.6.3-1_amd64.deb ... Unpacking libinput-bin (1.6.3-1) ... Selecting previously unselected package libinput10:amd64. Preparing to unpack .../libinput10_1.6.3-1_amd64.deb ... Unpacking libinput10:amd64 (1.6.3-1) ... Selecting previously unselected package libqt5dbus5:amd64. Preparing to unpack .../libqt5dbus5_5.7.1+dfsg-3+deb9u2_amd64.deb ... Unpacking libqt5dbus5:amd64 (5.7.1+dfsg-3+deb9u2) ... Preparing to unpack .../glib-networking-services_2.50.0-1+deb9u1_amd64.deb ... Unpacking glib-networking-services (2.50.0-1+deb9u1) over (2.42.0-2) ... Preparing to unpack .../glib-networking_2.50.0-1+deb9u1_amd64.deb ... Unpacking glib-networking:amd64 (2.50.0-1+deb9u1) over (2.42.0-2) ... Preparing to unpack .../glib-networking-common_2.50.0-1+deb9u1_all.deb ... Unpacking glib-networking-common (2.50.0-1+deb9u1) over (2.42.0-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 178300 files and directories currently installed.) Removing libproxy1:amd64 (0.4.11-4+b2) ... Selecting previously unselected package libproxy1v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 178293 files and directories currently installed.) Preparing to unpack .../libproxy1v5_0.4.14-2_amd64.deb ... Unpacking libproxy1v5:amd64 (0.4.14-2) ... Selecting previously unselected package libqt5network5:amd64. Preparing to unpack .../libqt5network5_5.7.1+dfsg-3+deb9u2_amd64.deb ... Unpacking libqt5network5:amd64 (5.7.1+dfsg-3+deb9u2) ... Selecting previously unselected package libxcb-icccm4:amd64. Preparing to unpack .../libxcb-icccm4_0.4.1-1_amd64.deb ... Unpacking libxcb-icccm4:amd64 (0.4.1-1) ... Selecting previously unselected package libxcb-util0:amd64. Preparing to unpack .../libxcb-util0_0.3.8-3+b2_amd64.deb ... Unpacking libxcb-util0:amd64 (0.3.8-3+b2) ... Selecting previously unselected package libxcb-image0:amd64. Preparing to unpack .../libxcb-image0_0.4.0-1+b2_amd64.deb ... Unpacking libxcb-image0:amd64 (0.4.0-1+b2) ... Selecting previously unselected package libxcb-keysyms1:amd64. Preparing to unpack .../libxcb-keysyms1_0.4.0-1+b2_amd64.deb ... Unpacking libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Selecting previously unselected package libxcb-randr0:amd64. Preparing to unpack .../libxcb-randr0_1.12-1_amd64.deb ... Unpacking libxcb-randr0:amd64 (1.12-1) ... Selecting previously unselected package libxcb-render-util0:amd64. Preparing to unpack .../libxcb-render-util0_0.3.9-1_amd64.deb ... Unpacking libxcb-render-util0:amd64 (0.3.9-1) ... Selecting previously unselected package libxcb-xinerama0:amd64. Preparing to unpack .../libxcb-xinerama0_1.12-1_amd64.deb ... Unpacking libxcb-xinerama0:amd64 (1.12-1) ... Selecting previously unselected package libxcb-xkb1:amd64. Preparing to unpack .../libxcb-xkb1_1.12-1_amd64.deb ... Unpacking libxcb-xkb1:amd64 (1.12-1) ... Selecting previously unselected package libxkbcommon-x11-0:amd64. Preparing to unpack .../libxkbcommon-x11-0_0.7.1-2~deb9u1_amd64.deb ... Unpacking libxkbcommon-x11-0:amd64 (0.7.1-2~deb9u1) ... Selecting previously unselected package libqt5gui5:amd64. Preparing to unpack .../libqt5gui5_5.7.1+dfsg-3+deb9u2_amd64.deb ... Unpacking libqt5gui5:amd64 (5.7.1+dfsg-3+deb9u2) ... Selecting previously unselected package libqt5widgets5:amd64. Preparing to unpack .../libqt5widgets5_5.7.1+dfsg-3+deb9u2_amd64.deb ... Unpacking libqt5widgets5:amd64 (5.7.1+dfsg-3+deb9u2) ... Selecting previously unselected package libqt5printsupport5:amd64. Preparing to unpack .../libqt5printsupport5_5.7.1+dfsg-3+deb9u2_amd64.deb ... Unpacking libqt5printsupport5:amd64 (5.7.1+dfsg-3+deb9u2) ... Selecting previously unselected package libqt5svg5:amd64. Preparing to unpack .../libqt5svg5_5.7.1~20161021-2+b2_amd64.deb ... Unpacking libqt5svg5:amd64 (5.7.1~20161021-2+b2) ... Preparing to unpack .../libgdk-pixbuf2.0-0_2.36.5-2+deb9u2_amd64.deb ... Unpacking libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) over (2.31.1-2+deb8u7) ... Preparing to unpack .../libgdk-pixbuf2.0-common_2.36.5-2+deb9u2_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.36.5-2+deb9u2) over (2.31.1-2+deb8u7) ... Preparing to unpack .../libatspi2.0-0_2.22.0-6+deb9u1_amd64.deb ... Unpacking libatspi2.0-0:amd64 (2.22.0-6+deb9u1) over (2.14.0-1) ... Preparing to unpack .../libatk-bridge2.0-0_2.22.0-2_amd64.deb ... Unpacking libatk-bridge2.0-0:amd64 (2.22.0-2) over (2.14.0-2) ... Selecting previously unselected package libepoxy0:amd64. Preparing to unpack .../libepoxy0_1.3.1-2_amd64.deb ... Unpacking libepoxy0:amd64 (1.3.1-2) ... Selecting previously unselected package libwayland-egl1-mesa:amd64. Preparing to unpack .../libwayland-egl1-mesa_13.0.6-1+b2_amd64.deb ... Unpacking libwayland-egl1-mesa:amd64 (13.0.6-1+b2) ... Preparing to unpack .../adwaita-icon-theme_3.22.0-1+deb9u1_all.deb ... Unpacking adwaita-icon-theme (3.22.0-1+deb9u1) over (3.14.0-2) ... Preparing to unpack .../libgtk-3-0_3.22.11-1_amd64.deb ... Unpacking libgtk-3-0:amd64 (3.22.11-1) over (3.14.5-1+deb8u1) ... Preparing to unpack .../libgtk-3-bin_3.22.11-1_amd64.deb ... Unpacking libgtk-3-bin (3.22.11-1) over (3.14.5-1+deb8u1) ... Preparing to unpack .../libgtk2.0-bin_2.24.31-2_amd64.deb ... Unpacking libgtk2.0-bin (2.24.31-2) over (2.24.25-3+deb8u2) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../gtk-update-icon-cache_3.22.11-1_amd64.deb ... Removing 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin' Removing 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin' Unpacking gtk-update-icon-cache (3.22.11-1) ... Preparing to unpack .../libgtk2.0-0_2.24.31-2_amd64.deb ... Unpacking libgtk2.0-0:amd64 (2.24.31-2) over (2.24.25-3+deb8u2) ... Preparing to unpack .../python-wxgtk3.0_3.0.2.0+dfsg-4_amd64.deb ... Unpacking python-wxgtk3.0 (3.0.2.0+dfsg-4) over (3.0.1.1+dfsg-2) ... Preparing to unpack .../treeviewx_0.5.1+20100823-4_amd64.deb ... Unpacking treeviewx (0.5.1+20100823-4) over (0.5.1+20100823-3) ... Preparing to unpack .../gentle_1.9+cvs20100605+dfsg1-5_amd64.deb ... Unpacking gentle (1.9+cvs20100605+dfsg1-5) over (1.9+cvs20100605+dfsg1-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for mime-support (3.60) ... Processing triggers for menu (2.1.47) ... Processing triggers for hicolor-icon-theme (0.15-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181316 files and directories currently installed.) Removing libwxgtk3.0-0:amd64 (3.0.2-1+b1) ... Selecting previously unselected package libwxgtk3.0-0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181288 files and directories currently installed.) Preparing to unpack .../libwxgtk3.0-0v5_3.0.2+dfsg-4_amd64.deb ... Unpacking libwxgtk3.0-0v5:amd64 (3.0.2+dfsg-4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181315 files and directories currently installed.) Removing libtinyxml2.6.2:amd64 (2.6.2-2) ... Selecting previously unselected package libtinyxml2.6.2v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181310 files and directories currently installed.) Preparing to unpack .../libtinyxml2.6.2v5_2.6.2-4_amd64.deb ... Unpacking libtinyxml2.6.2v5:amd64 (2.6.2-4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181315 files and directories currently installed.) Removing libwxbase3.0-0:amd64 (3.0.2-1+b1) ... Selecting previously unselected package libwxbase3.0-0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181302 files and directories currently installed.) Preparing to unpack .../libwxbase3.0-0v5_3.0.2+dfsg-4_amd64.deb ... Unpacking libwxbase3.0-0v5:amd64 (3.0.2+dfsg-4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: gnuplot-tex: dependency problems, but removing anyway as you requested: gnuplot-data depends on gnuplot-tex. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181314 files and directories currently installed.) Removing gnuplot-tex (4.6.6-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181303 files and directories currently installed.) Preparing to unpack .../gnuplot-data_5.0.5+dfsg1-6+deb9u1_all.deb ... Unpacking gnuplot-data (5.0.5+dfsg1-6+deb9u1) over (4.6.6-2) ... Preparing to unpack .../gnuplot-qt_5.0.5+dfsg1-6+deb9u1_amd64.deb ... Unpacking gnuplot-qt (5.0.5+dfsg1-6+deb9u1) over (4.6.6-2) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for menu (2.1.47) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181306 files and directories currently installed.) Removing jalview (2.7.dfsg-4) ... Processing triggers for menu (2.1.47) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181297 files and directories currently installed.) Preparing to unpack .../libasprintf-dev_0.19.8.1-2+deb9u1_amd64.deb ... Unpacking libasprintf-dev:amd64 (0.19.8.1-2+deb9u1) over (0.19.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181297 files and directories currently installed.) Removing libasprintf0c2:amd64 (0.19.3-2) ... Selecting previously unselected package libasprintf0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181291 files and directories currently installed.) Preparing to unpack .../libasprintf0v5_0.19.8.1-2+deb9u1_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.8.1-2+deb9u1) ... Preparing to unpack .../cassiopee_1.0.5-1+b1_amd64.deb ... Unpacking cassiopee (1.0.5-1+b1) over (1.0.1+dfsg-3+b1) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181297 files and directories currently installed.) Removing libcassie1 (1.0.1+dfsg-3+b1) ... Removing libgoogle-glog0 (0.3.3-2) ... Removing libgflags2 (2.0-2.1) ... Selecting previously unselected package libgflags2v5. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181274 files and directories currently installed.) Preparing to unpack .../libgflags2v5_2.1.2-4_amd64.deb ... Unpacking libgflags2v5 (2.1.2-4) ... Selecting previously unselected package libgoogle-glog0v5. Preparing to unpack .../libgoogle-glog0v5_0.3.4-2_amd64.deb ... Unpacking libgoogle-glog0v5 (0.3.4-2) ... Selecting previously unselected package libcassie1v5. Preparing to unpack .../libcassie1v5_1.0.5-1+b1_amd64.deb ... Unpacking libcassie1v5 (1.0.5-1+b1) ... Preparing to unpack .../ipig_0.0.r5-2_amd64.deb ... Unpacking ipig (0.0.r5-2) over (0.0.r5-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181297 files and directories currently installed.) Removing libcommons-net1-java (1.4.1-5) ... Selecting previously unselected package libcommons-net-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180956 files and directories currently installed.) Preparing to unpack .../libcommons-net-java_3.5-1_all.deb ... Unpacking libcommons-net-java (3.5-1) ... Preparing to unpack .../freecontact_1.0.21-5_amd64.deb ... Unpacking freecontact (1.0.21-5) over (1.0.21-3+b1) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180969 files and directories currently installed.) Removing libfreecontact0 (1.0.21-3+b1) ... Selecting previously unselected package libfreecontact0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180961 files and directories currently installed.) Preparing to unpack .../libfreecontact0v5_1.0.21-5_amd64.deb ... Unpacking libfreecontact0v5:amd64 (1.0.21-5) ... Preparing to unpack .../libxerces-c3.1_3.1.4+debian-2+deb9u1_amd64.deb ... Unpacking libxerces-c3.1:amd64 (3.1.4+debian-2+deb9u1) over (3.1.1-5.1+deb8u4) ... Preparing to unpack .../fastx-toolkit_0.0.14-3_amd64.deb ... Unpacking fastx-toolkit (0.0.14-3) over (0.0.14-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180965 files and directories currently installed.) Removing libgtextutils0:amd64 (0.7-2) ... Selecting previously unselected package libgtextutils0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180960 files and directories currently installed.) Preparing to unpack .../libgtextutils0v5_0.7-4_amd64.deb ... Unpacking libgtextutils0v5:amd64 (0.7-4) ... Selecting previously unselected package beignet-opencl-icd:amd64. Preparing to unpack .../beignet-opencl-icd_1.3.0-4_amd64.deb ... Unpacking beignet-opencl-icd:amd64 (1.3.0-4) ... Preparing to unpack .../mrbayes_3.2.6+dfsg-1+b4_amd64.deb ... Unpacking mrbayes (3.2.6+dfsg-1+b4) over (3.2.3+dfsg-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181014 files and directories currently installed.) Removing libhmsbeagle1 (2.1.2-1) ... Selecting previously unselected package libhmsbeagle1v5. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181004 files and directories currently installed.) Preparing to unpack .../libhmsbeagle1v5_2.1.2+20160831-5_amd64.deb ... Unpacking libhmsbeagle1v5 (2.1.2+20160831-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: libreadline6-dev:amd64: dependency problems, but removing anyway as you requested: libreadline-dev:amd64 depends on libreadline6-dev (= 6.3-8+b3). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181017 files and directories currently installed.) Removing libreadline6-dev:amd64 (6.3-8+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181003 files and directories currently installed.) Preparing to unpack .../libreadline-dev_7.0-3_amd64.deb ... Unpacking libreadline-dev:amd64 (7.0-3) over (6.3-8+b3) ... Preparing to unpack .../relion-bin_1.4+dfsg-2+b2_amd64.deb ... Unpacking relion-bin (1.4+dfsg-2+b2) over (1.3+dfsg-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181019 files and directories currently installed.) Removing librelion-1.3-1:amd64 (1.3+dfsg-2) ... Selecting previously unselected package librelion-1.4-1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181014 files and directories currently installed.) Preparing to unpack .../librelion-1.4-1_1.4+dfsg-2+b2_amd64.deb ... Unpacking librelion-1.4-1:amd64 (1.4+dfsg-2+b2) ... Selecting previously unselected package mariadb-common. Preparing to unpack .../mariadb-common_10.1.45-0+deb9u1_all.deb ... Unpacking mariadb-common (10.1.45-0+deb9u1) ... Selecting previously unselected package libaio1:amd64. Preparing to unpack .../libaio1_0.3.110-3_amd64.deb ... Unpacking libaio1:amd64 (0.3.110-3) ... Selecting previously unselected package libreadline5:amd64. Preparing to unpack .../libreadline5_5.2+dfsg-3+b1_amd64.deb ... Unpacking libreadline5:amd64 (5.2+dfsg-3+b1) ... Preparing to unpack .../mysql-client_5.5.9999+default_amd64.deb ... Unpacking mysql-client (5.5.9999+default) over (5.5.60-0+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: mysql-client-5.5: dependency problems, but removing anyway as you requested: biomaj depends on mysql-client; however: Package mysql-client is not configured yet. Package mysql-client-5.5 which provides mysql-client is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181045 files and directories currently installed.) Removing mysql-client-5.5 (5.5.60-0+deb8u1) ... Processing triggers for man-db (2.7.6.1-2) ... Selecting previously unselected package mariadb-client-core-10.1. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180992 files and directories currently installed.) Preparing to unpack .../mariadb-client-core-10.1_10.1.45-0+deb9u1_amd64.deb ... Unpacking mariadb-client-core-10.1 (10.1.45-0+deb9u1) ... Selecting previously unselected package libjemalloc1. Preparing to unpack .../libjemalloc1_3.6.0-9.1_amd64.deb ... Unpacking libjemalloc1 (3.6.0-9.1) ... Selecting previously unselected package mariadb-client-10.1. Preparing to unpack .../mariadb-client-10.1_10.1.45-0+deb9u1_amd64.deb ... Unpacking mariadb-client-10.1 (10.1.45-0+deb9u1) ... Selecting previously unselected package default-mysql-client. Preparing to unpack .../default-mysql-client_1.0.2_all.deb ... Unpacking default-mysql-client (1.0.2) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for menu (2.1.47) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 181055 files and directories currently installed.) Removing openjdk-7-jdk:amd64 (7u181-2.6.14-1~deb8u1) ... update-alternatives: using /usr/bin/fastjar to provide /usr/bin/jar (jar) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180934 files and directories currently installed.) Preparing to unpack .../default-jre_2%3a1.8-58+deb9u1_amd64.deb ... Unpacking default-jre (2:1.8-58+deb9u1) over (2:1.7-52) ... Preparing to unpack .../default-jre-headless_2%3a1.8-58+deb9u1_amd64.deb ... Unpacking default-jre-headless (2:1.8-58+deb9u1) over (2:1.7-52) ... dpkg: tzdata-java: dependency problems, but removing anyway as you requested: openjdk-7-jre-headless:amd64 depends on tzdata-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180933 files and directories currently installed.) Removing tzdata-java (2018e-0+deb8u1) ... dpkg: openjdk-7-jre:amd64: dependency problems, but removing anyway as you requested: jmol-applet depends on default-jre | java2-runtime; however: Package default-jre is not configured yet. Package java2-runtime is not installed. Package openjdk-7-jre:amd64 which provides java2-runtime is to be removed. Package default-jre which provides java2-runtime is not configured yet. javahelp2 depends on default-jre | java2-runtime; however: Package default-jre is not configured yet. Package java2-runtime is not installed. Package openjdk-7-jre:amd64 which provides java2-runtime is to be removed. Package default-jre which provides java2-runtime is not configured yet. figtree depends on default-jre | java5-runtime | java6-runtime | java7-runtime; however: Package default-jre is not configured yet. Package java5-runtime is not installed. Package openjdk-7-jre:amd64 which provides java5-runtime is to be removed. Package default-jre which provides java5-runtime is not configured yet. Package java6-runtime is not installed. Package openjdk-7-jre:amd64 which provides java6-runtime is to be removed. Package default-jre which provides java6-runtime is not configured yet. Package java7-runtime is not installed. Package openjdk-7-jre:amd64 which provides java7-runtime is to be removed. Package default-jre which provides java7-runtime is not configured yet. biomaj depends on default-jre | java6-runtime; however: Package default-jre is not configured yet. Package java6-runtime is not installed. Package openjdk-7-jre:amd64 which provides java6-runtime is to be removed. Package default-jre which provides java6-runtime is not configured yet. picard-tools depends on default-jre | java6-runtime; however: Package default-jre is not configured yet. Package java6-runtime is not installed. Package openjdk-7-jre:amd64 which provides java6-runtime is to be removed. Package default-jre which provides java6-runtime is not configured yet. neobio depends on default-jre | java6-runtime; however: Package default-jre is not configured yet. Package java6-runtime is not installed. Package openjdk-7-jre:amd64 which provides java6-runtime is to be removed. Package default-jre which provides java6-runtime is not configured yet. figtree depends on default-jre | java5-runtime | java6-runtime | java7-runtime; however: Package default-jre is not configured yet. Package java5-runtime is not installed. Package openjdk-7-jre:amd64 which provides java5-runtime is to be removed. Package default-jre which provides java5-runtime is not configured yet. Package java6-runtime is not installed. Package openjdk-7-jre:amd64 which provides java6-runtime is to be removed. Package default-jre which provides java6-runtime is not configured yet. Package java7-runtime is not installed. Package openjdk-7-jre:amd64 which provides java7-runtime is to be removed. Package default-jre which provides java7-runtime is not configured yet. figtree depends on default-jre | java5-runtime | java6-runtime | java7-runtime; however: Package default-jre is not configured yet. Package java5-runtime is not installed. Package openjdk-7-jre:amd64 which provides java5-runtime is to be removed. Package default-jre which provides java5-runtime is not configured yet. Package java6-runtime is not installed. Package openjdk-7-jre:amd64 which provides java6-runtime is to be removed. Package default-jre which provides java6-runtime is not configured yet. Package java7-runtime is not installed. Package openjdk-7-jre:amd64 which provides java7-runtime is to be removed. Package default-jre which provides java7-runtime is not configured yet. Removing openjdk-7-jre:amd64 (7u181-2.6.14-1~deb8u1) ... dpkg: openjdk-7-jre-headless:amd64: dependency problems, but removing anyway as you requested: ca-certificates-java depends on openjdk-7-jre-headless | java7-runtime-headless; however: Package openjdk-7-jre-headless:amd64 is to be removed. Package java7-runtime-headless is not installed. Package default-jre-headless which provides java7-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java7-runtime-headless is to be removed. junit4 depends on default-jre-headless | java5-runtime-headless; however: Package default-jre-headless is not configured yet. Package java5-runtime-headless is not installed. Package default-jre-headless which provides java5-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java5-runtime-headless is to be removed. ant depends on default-jre-headless | java5-runtime-headless | java6-runtime-headless | java7-runtime-headless; however: Package default-jre-headless is not configured yet. Package java5-runtime-headless is not installed. Package default-jre-headless which provides java5-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java5-runtime-headless is to be removed. Package java6-runtime-headless is not installed. Package default-jre-headless which provides java6-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java6-runtime-headless is to be removed. Package java7-runtime-headless is not installed. Package default-jre-headless which provides java7-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java7-runtime-headless is to be removed. ant depends on default-jre-headless | java5-runtime-headless | java6-runtime-headless | java7-runtime-headless; however: Package default-jre-headless is not configured yet. Package java5-runtime-headless is not installed. Package default-jre-headless which provides java5-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java5-runtime-headless is to be removed. Package java6-runtime-headless is not installed. Package default-jre-headless which provides java6-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java6-runtime-headless is to be removed. Package java7-runtime-headless is not installed. Package default-jre-headless which provides java7-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java7-runtime-headless is to be removed. ant depends on default-jre-headless | java5-runtime-headless | java6-runtime-headless | java7-runtime-headless; however: Package default-jre-headless is not configured yet. Package java5-runtime-headless is not installed. Package default-jre-headless which provides java5-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java5-runtime-headless is to be removed. Package java6-runtime-headless is not installed. Package default-jre-headless which provides java6-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java6-runtime-headless is to be removed. Package java7-runtime-headless is not installed. Package default-jre-headless which provides java7-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java7-runtime-headless is to be removed. ca-certificates-java depends on openjdk-7-jre-headless | java7-runtime-headless; however: Package openjdk-7-jre-headless:amd64 is to be removed. Package java7-runtime-headless is not installed. Package default-jre-headless which provides java7-runtime-headless is not configured yet. Package openjdk-7-jre-headless:amd64 which provides java7-runtime-headless is to be removed. Removing openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... Processing triggers for hicolor-icon-theme (0.15-1) ... Processing triggers for mime-support (3.60) ... Selecting previously unselected package openjdk-8-jre-headless:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180287 files and directories currently installed.) Preparing to unpack .../openjdk-8-jre-headless_8u252-b09-1~deb9u1_amd64.deb ... Unpacking openjdk-8-jre-headless:amd64 (8u252-b09-1~deb9u1) ... Preparing to unpack .../libatk-wrapper-java-jni_0.33.3-13+deb9u1_amd64.deb ... Unpacking libatk-wrapper-java-jni:amd64 (0.33.3-13+deb9u1) over (0.30.5-1) ... Preparing to unpack .../libpulse0_10.0-1+deb9u1_amd64.deb ... Unpacking libpulse0:amd64 (10.0-1+deb9u1) over (5.0-13) ... Selecting previously unselected package openjdk-8-jre:amd64. Preparing to unpack .../openjdk-8-jre_8u252-b09-1~deb9u1_amd64.deb ... Unpacking openjdk-8-jre:amd64 (8u252-b09-1~deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for mime-support (3.60) ... Processing triggers for hicolor-icon-theme (0.15-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180545 files and directories currently installed.) Removing r-other-bio3d (1.1-5-1) ... Selecting previously unselected package cron. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180450 files and directories currently installed.) Preparing to unpack .../cron_3.0pl1-128+deb9u1_amd64.deb ... Unpacking cron (3.0pl1-128+deb9u1) ... Selecting previously unselected package fonts-droid-fallback. Preparing to unpack .../fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... Processing triggers for systemd (232-25+deb9u12) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libreadline7:amd64 (7.0-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180501 files and directories currently installed.) Preparing to unpack .../gawk_1%3a4.1.4+dfsg-1_amd64.deb ... Unpacking gawk (1:4.1.4+dfsg-1) over (1:4.1.1+dfsg-1) ... Selecting previously unselected package libmagickwand-6.q16-3:amd64. Preparing to unpack .../libmagickwand-6.q16-3_8%3a6.9.7.4+dfsg-11+deb9u8_amd64.deb ... Unpacking libmagickwand-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Selecting previously unselected package libgphoto2-port12:amd64. Preparing to unpack .../libgphoto2-port12_2.5.12-1_amd64.deb ... Unpacking libgphoto2-port12:amd64 (2.5.12-1) ... Preparing to unpack .../libgphoto2-6_2.5.12-1_amd64.deb ... Unpacking libgphoto2-6:amd64 (2.5.12-1) over (2.5.4-1.1+b2) ... Preparing to unpack .../libsane_1.0.25-4.1_amd64.deb ... Unpacking libsane:amd64 (1.0.25-4.1) over (1.0.24-8+deb8u2) ... Preparing to unpack .../libsane-common_1.0.25-4.1_all.deb ... Unpacking libsane-common (1.0.25-4.1) over (1.0.24-8+deb8u2) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libboost-system1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libboost-filesystem1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libboost-iostreams1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libboost-regex1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libboost-thread1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up mira-assembler (4.9.6-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package mira-rfam-12s-rrna. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180562 files and directories currently installed.) Preparing to unpack .../mira-rfam-12s-rrna_4.9.6-2_all.deb ... Unpacking mira-rfam-12s-rrna (4.9.6-2) ... Selecting previously unselected package libjs-jquery-metadata. Preparing to unpack .../libjs-jquery-metadata_11-3_all.deb ... Unpacking libjs-jquery-metadata (11-3) ... Selecting previously unselected package libjs-jquery-tablesorter. Preparing to unpack .../libjs-jquery-tablesorter_11-3_all.deb ... Unpacking libjs-jquery-tablesorter (11-3) ... Selecting previously unselected package libjs-twitter-bootstrap. Preparing to unpack .../libjs-twitter-bootstrap_2.0.2+dfsg-10_all.deb ... Unpacking libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Selecting previously unselected package libjs-twitter-bootstrap-datepicker. Preparing to unpack .../libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-1_all.deb ... Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../libassuan0_2.4.3-2_amd64.deb ... Unpacking libassuan0:amd64 (2.4.3-2) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../pinentry-curses_1.0.0-2_amd64.deb ... Unpacking pinentry-curses (1.0.0-2) ... Selecting previously unselected package libnpth0:amd64. Preparing to unpack .../libnpth0_1.3-1_amd64.deb ... Unpacking libnpth0:amd64 (1.3-1) ... Selecting previously unselected package gnupg-agent. Preparing to unpack .../gnupg-agent_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg-agent (2.1.18-8~deb9u4) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../libksba8_1.3.5-2_amd64.deb ... Unpacking libksba8:amd64 (1.3.5-2) ... Preparing to unpack .../gnupg_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg (2.1.18-8~deb9u4) over (1.4.18-7+deb8u5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libnpth0:amd64 (1.3-1) ... Setting up gnupg-agent (2.1.18-8~deb9u4) ... Setting up libksba8:amd64 (1.3.5-2) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up gnupg (2.1.18-8~deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180826 files and directories currently installed.) Preparing to unpack .../tzdata_2020a-0+deb9u1_all.deb ... Unpacking tzdata (2020a-0+deb9u1) over (2018e-0+deb8u1) ... Setting up tzdata (2020a-0+deb9u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Oct 30 10:24:31 UTC 2022. Universal Time is now: Sun Oct 30 10:24:31 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Selecting previously unselected package libisc-export160. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 180834 files and directories currently installed.) Preparing to unpack .../libisc-export160_1%3a9.10.3.dfsg.P4-12.3+deb9u6_amd64.deb ... Unpacking libisc-export160 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Selecting previously unselected package libdns-export162. Preparing to unpack .../libdns-export162_1%3a9.10.3.dfsg.P4-12.3+deb9u6_amd64.deb ... Unpacking libdns-export162 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Preparing to unpack .../isc-dhcp-client_4.3.5-3+deb9u1_amd64.deb ... Unpacking isc-dhcp-client (4.3.5-3+deb9u1) over (4.3.1-6+deb8u3) ... Preparing to unpack .../isc-dhcp-common_4.3.5-3+deb9u1_amd64.deb ... Unpacking isc-dhcp-common (4.3.5-3+deb9u1) over (4.3.1-6+deb8u3) ... Preparing to unpack .../file_1%3a5.30-1+deb9u3_amd64.deb ... Unpacking file (1:5.30-1+deb9u3) over (1:5.22+15-2+deb8u4) ... Preparing to unpack .../libmagic1_1%3a5.30-1+deb9u3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.30-1+deb9u3) over (1:5.22+15-2+deb8u4) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../libmagic-mgc_1%3a5.30-1+deb9u3_amd64.deb ... Unpacking libmagic-mgc (1:5.30-1+deb9u3) ... Preparing to unpack .../openssh-client_1%3a7.4p1-10+deb9u7_amd64.deb ... Unpacking openssh-client (1:7.4p1-10+deb9u7) over (1:6.7p1-5+deb8u4) ... Selecting previously unselected package abyss. Preparing to unpack .../abyss_2.0.2-2_amd64.deb ... Unpacking abyss (2.0.2-2) ... Selecting previously unselected package adapterremoval. Preparing to unpack .../adapterremoval_2.2.0-1_amd64.deb ... Unpacking adapterremoval (2.2.0-1) ... Selecting previously unselected package libjs-jquery-datatables. Preparing to unpack .../libjs-jquery-datatables_1.10.13+dfsg-2_all.deb ... Unpacking libjs-jquery-datatables (1.10.13+dfsg-2) ... Selecting previously unselected package libjs-mootools. Preparing to unpack .../libjs-mootools_1.4.5~debian1-2.1_all.deb ... Unpacking libjs-mootools (1.4.5~debian1-2.1) ... Selecting previously unselected package aegean. Preparing to unpack .../aegean_0.15.2+dfsg-1_amd64.deb ... Unpacking aegean (0.15.2+dfsg-1) ... Preparing to unpack .../aevol_4.4-1+b4_amd64.deb ... Unpacking aevol (4.4-1+b4) over (4.4-1) ... Selecting previously unselected package alter-sequence-alignment. Preparing to unpack .../alter-sequence-alignment_1.3.3+dfsg-1_amd64.deb ... Unpacking alter-sequence-alignment (1.3.3+dfsg-1) ... Preparing to unpack .../amap-align_2.2-6_amd64.deb ... Unpacking amap-align (2.2-6) over (2.2-4) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../libdivsufsort3_2.0.1-2_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-2) ... Selecting previously unselected package andi. Preparing to unpack .../archives/andi_0.10-2_amd64.deb ... Unpacking andi (0.10-2) ... Selecting previously unselected package libprotobuf10:amd64. Preparing to unpack .../libprotobuf10_3.0.0-9_amd64.deb ... Unpacking libprotobuf10:amd64 (3.0.0-9) ... Preparing to unpack .../libanfo0_0.98-5_amd64.deb ... Unpacking libanfo0 (0.98-5) over (0.98-4+b1) ... Preparing to unpack .../archives/anfo_0.98-5_amd64.deb ... Unpacking anfo (0.98-5) over (0.98-4+b1) ... Selecting previously unselected package python3-dendropy. Preparing to unpack .../python3-dendropy_4.2.0+dfsg-1_all.deb ... Unpacking python3-dendropy (4.2.0+dfsg-1) ... Preparing to unpack .../mummer_3.23+dfsg-2_amd64.deb ... Unpacking mummer (3.23+dfsg-2) over (3.23~dfsg-2) ... Selecting previously unselected package python3-pymummer. Preparing to unpack .../python3-pymummer_0.10.1-1_all.deb ... Unpacking python3-pymummer (0.10.1-1) ... Selecting previously unselected package libhts1:amd64. Preparing to unpack .../libhts1_1.3.2-2_amd64.deb ... Unpacking libhts1:amd64 (1.3.2-2) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../python3-pysam_0.10.0+ds-2_amd64.deb ... Unpacking python3-pysam (0.10.0+ds-2) ... Selecting previously unselected package libfml0. Preparing to unpack .../libfml0_0.1-2+b1_amd64.deb ... Unpacking libfml0 (0.1-2+b1) ... Selecting previously unselected package libminimap0. Preparing to unpack .../libminimap0_0.2-3+b1_amd64.deb ... Unpacking libminimap0 (0.2-3+b1) ... Preparing to unpack .../libatomic1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libatomic1:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libtbb2_4.3~20150611-2_amd64.deb ... Unpacking libtbb2:amd64 (4.3~20150611-2) over (4.2~20140122-5) ... Preparing to unpack .../bowtie2_2.3.0-2_amd64.deb ... Unpacking bowtie2 (2.3.0-2) over (2.2.4-1) ... Preparing to unpack .../cd-hit_4.6.6-2_amd64.deb ... Unpacking cd-hit (4.6.6-2) over (4.6.1-2012-08-27-2) ... Selecting previously unselected package libcapnp-0.5.3. Preparing to unpack .../libcapnp-0.5.3_0.5.3-2_amd64.deb ... Unpacking libcapnp-0.5.3 (0.5.3-2) ... Selecting previously unselected package mash. Preparing to unpack .../mash_1.1.1-2_amd64.deb ... Unpacking mash (1.1.1-2) ... Selecting previously unselected package ariba. Preparing to unpack .../ariba_2.6.1+ds-1_amd64.deb ... Unpacking ariba (2.6.1+ds-1) ... Selecting previously unselected package art-nextgen-simulation-tools. Preparing to unpack .../art-nextgen-simulation-tools_20160605+dfsg-2_amd64.deb ... Unpacking art-nextgen-simulation-tools (20160605+dfsg-2) ... Preparing to unpack .../libhpdf-2.2.1_2.2.1-1.1+b1_amd64.deb ... Unpacking libhpdf-2.2.1 (2.2.1-1.1+b1) over (2.2.1-1.1) ... Preparing to unpack .../emboss_6.6.0+dfsg-6_amd64.deb ... Unpacking emboss (6.6.0+dfsg-6) over (6.6.0+dfsg-1) ... Preparing to unpack .../emboss-lib_6.6.0+dfsg-6_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-6) over (6.6.0+dfsg-1) ... Preparing to unpack .../emboss-data_6.6.0+dfsg-6_all.deb ... Unpacking emboss-data (6.6.0+dfsg-6) over (6.6.0+dfsg-1) ... Selecting previously unselected package jemboss. Preparing to unpack .../jemboss_6.6.0+dfsg-6_all.deb ... Unpacking jemboss (6.6.0+dfsg-6) ... Selecting previously unselected package libbsf-java. Preparing to unpack .../libbsf-java_1%3a2.4.0-5_all.deb ... Unpacking libbsf-java (1:2.4.0-5) ... Selecting previously unselected package libjaxp1.3-java. Preparing to unpack .../libjaxp1.3-java_1.3.05-2_all.deb ... Unpacking libjaxp1.3-java (1.3.05-2) ... Selecting previously unselected package libxalan2-java. Preparing to unpack .../libxalan2-java_2.7.1-9_all.deb ... Unpacking libxalan2-java (2.7.1-9) ... Selecting previously unselected package libxmlgraphics-commons-java. Preparing to unpack .../libxmlgraphics-commons-java_2.1-2_all.deb ... Unpacking libxmlgraphics-commons-java (2.1-2) ... Selecting previously unselected package libbatik-java. Preparing to unpack .../libbatik-java_1.8-4+deb9u2_all.deb ... Unpacking libbatik-java (1.8-4+deb9u2) ... Selecting previously unselected package libcommons-lang3-java. Preparing to unpack .../libcommons-lang3-java_3.5-1_all.deb ... Unpacking libcommons-lang3-java (3.5-1) ... Selecting previously unselected package libngs-sdk1. Preparing to unpack .../libngs-sdk1_1.3.0-2_amd64.deb ... Unpacking libngs-sdk1 (1.3.0-2) ... Selecting previously unselected package libngs-sdk-dev. Preparing to unpack .../libngs-sdk-dev_1.3.0-2_amd64.deb ... Unpacking libngs-sdk-dev (1.3.0-2) ... Selecting previously unselected package libngs-java. Preparing to unpack .../libngs-java_1.3.0-2_amd64.deb ... Unpacking libngs-java (1.3.0-2) ... Selecting previously unselected package libsnappy1v5:amd64. Preparing to unpack .../libsnappy1v5_1.1.3-3_amd64.deb ... Unpacking libsnappy1v5:amd64 (1.1.3-3) ... Selecting previously unselected package libsnappy-jni. Preparing to unpack .../libsnappy-jni_1.1.2.6-1_amd64.deb ... Unpacking libsnappy-jni (1.1.2.6-1) ... Selecting previously unselected package libsnappy-java. Preparing to unpack .../libsnappy-java_1.1.2.6-1_all.deb ... Unpacking libsnappy-java (1.1.2.6-1) ... Selecting previously unselected package libxz-java. Preparing to unpack .../libxz-java_1.6-1_all.deb ... Unpacking libxz-java (1.6-1) ... Selecting previously unselected package libhtsjdk-java. Preparing to unpack .../libhtsjdk-java_2.8.1+dfsg-1_all.deb ... Unpacking libhtsjdk-java (2.8.1+dfsg-1) ... Selecting previously unselected package libibatis-java. Preparing to unpack .../libibatis-java_2.3.4.726-6_all.deb ... Unpacking libibatis-java (2.3.4.726-6) ... Selecting previously unselected package libj2ssh-java. Preparing to unpack .../libj2ssh-java_0.2.9-4_all.deb ... Unpacking libj2ssh-java (0.2.9-4) ... Preparing to unpack .../picard-tools_2.8.1+dfsg-1_all.deb ... Unpacking picard-tools (2.8.1+dfsg-1) over (1.113-1) ... Selecting previously unselected package libatinject-jsr330-api-java. Preparing to unpack .../libatinject-jsr330-api-java_1.0+ds1-2_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-2) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../libjsr305-java_0.1~+svn49-10_all.deb ... Unpacking libjsr305-java (0.1~+svn49-10) ... Selecting previously unselected package libguava-java. Preparing to unpack .../libguava-java_19.0-1_all.deb ... Unpacking libguava-java (19.0-1) ... Selecting previously unselected package libpicard-java. Preparing to unpack .../libpicard-java_2.8.1+dfsg-1_all.deb ... Unpacking libpicard-java (2.8.1+dfsg-1) ... Selecting previously unselected package libpostgresql-jdbc-java. Preparing to unpack .../libpostgresql-jdbc-java_9.4.1212-1_all.deb ... Unpacking libpostgresql-jdbc-java (9.4.1212-1) ... Selecting previously unselected package artemis. Preparing to unpack .../artemis_16.0.17+dfsg-1_all.deb ... Unpacking artemis (16.0.17+dfsg-1) ... Selecting previously unselected package artfastqgenerator. Preparing to unpack .../artfastqgenerator_0.0.20150519-2_all.deb ... Unpacking artfastqgenerator (0.0.20150519-2) ... Preparing to unpack .../at-spi2-core_2.22.0-6+deb9u1_amd64.deb ... Unpacking at-spi2-core (2.22.0-6+deb9u1) over (2.14.0-1) ... dpkg: warning: unable to delete old directory '/etc/at-spi2': Directory not empty Selecting previously unselected package leaff. Preparing to unpack .../leaff_0~20150903+r2013-3_amd64.deb ... Unpacking leaff (0~20150903+r2013-3) ... Selecting previously unselected package meryl. Preparing to unpack .../meryl_0~20150903+r2013-3_amd64.deb ... Unpacking meryl (0~20150903+r2013-3) ... Selecting previously unselected package atac. Preparing to unpack .../atac_0~20150903+r2013-3_amd64.deb ... Unpacking atac (0~20150903+r2013-3) ... Selecting previously unselected package libbamtools2.4.0. Preparing to unpack .../libbamtools2.4.0_2.4.1+dfsg-1_amd64.deb ... Unpacking libbamtools2.4.0 (2.4.1+dfsg-1) ... Selecting previously unselected package augustus-data. Preparing to unpack .../augustus-data_3.2.3+dfsg-1_all.deb ... Unpacking augustus-data (3.2.3+dfsg-1) ... Selecting previously unselected package augustus. Preparing to unpack .../augustus_3.2.3+dfsg-1_amd64.deb ... Unpacking augustus (3.2.3+dfsg-1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.18-1_amd64.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Preparing to unpack .../autodock_4.2.6-3+b1_amd64.deb ... Unpacking autodock (4.2.6-3+b1) over (4.2.6-2) ... Preparing to unpack .../autogrid_4.2.6-3+b1_amd64.deb ... Unpacking autogrid (4.2.6-3+b1) over (4.2.6-2) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.15-6_all.deb ... Unpacking automake (1:1.15-6) ... Selecting previously unselected package libqes0. Preparing to unpack .../libqes0_0.2.7-1_amd64.deb ... Unpacking libqes0 (0.2.7-1) ... Selecting previously unselected package axe-demultiplexer. Preparing to unpack .../axe-demultiplexer_0.3.2+dfsg1-1_amd64.deb ... Unpacking axe-demultiplexer (0.3.2+dfsg1-1) ... Preparing to unpack .../ballview_1.4.3~beta1-3_amd64.deb ... Unpacking ballview (1.4.3~beta1-3) over (1.4.2+20140406-1+b2) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Preparing to unpack .../bamtools_2.4.1+dfsg-1_amd64.deb ... Unpacking bamtools (2.4.1+dfsg-1) over (2.3.0+dfsg-2) ... Preparing to unpack .../hmmer_3.1b2+dfsg-5_amd64.deb ... Unpacking hmmer (3.1b2+dfsg-5) over (3.1b1-3) ... Selecting previously unselected package barrnap. Preparing to unpack .../barrnap_0.7+dfsg-2_all.deb ... Unpacking barrnap (0.7+dfsg-2) ... Preparing to unpack .../bc_1.06.95-9+b3_amd64.deb ... Unpacking bc (1.06.95-9+b3) over (1.06.95-9) ... Preparing to unpack .../samtools_1.3.1-3_amd64.deb ... Unpacking samtools (1.3.1-3) over (0.1.19-1) ... Selecting previously unselected package bcftools. Preparing to unpack .../bcftools_1.3.1-1+b1_amd64.deb ... Unpacking bcftools (1.3.1-1+b1) ... Selecting previously unselected package beagle. Preparing to unpack .../beagle_4.1~160727-86a+dfsg-1_all.deb ... Unpacking beagle (4.1~160727-86a+dfsg-1) ... Selecting previously unselected package libhmsbeagle-java. Preparing to unpack .../libhmsbeagle-java_2.1.2+20160831-5_amd64.deb ... Unpacking libhmsbeagle-java (2.1.2+20160831-5) ... Selecting previously unselected package libconcurrent-java. Preparing to unpack .../libconcurrent-java_1.3.4-4_all.deb ... Unpacking libconcurrent-java (1.3.4-4) ... Selecting previously unselected package libcolt-free-java. Preparing to unpack .../libcolt-free-java_1.2.0+dfsg-4_all.deb ... Unpacking libcolt-free-java (1.2.0+dfsg-4) ... Selecting previously unselected package libcommons-math-java. Preparing to unpack .../libcommons-math-java_2.2-6_all.deb ... Unpacking libcommons-math-java (2.2-6) ... Selecting previously unselected package libitext1-java. Preparing to unpack .../libitext1-java_1.4-6_all.deb ... Unpacking libitext1-java (1.4-6) ... Selecting previously unselected package libmpj-java. Preparing to unpack .../libmpj-java_0.44+dfsg-3_all.deb ... Unpacking libmpj-java (0.44+dfsg-3) ... Selecting previously unselected package libmtj-java. Preparing to unpack .../libmtj-java_0.9.14+dfsg-4_all.deb ... Unpacking libmtj-java (0.9.14+dfsg-4) ... Selecting previously unselected package libnucleotidelikelihoodcore0. Preparing to unpack .../libnucleotidelikelihoodcore0_1.8.4+dfsg.1-1_amd64.deb ... Unpacking libnucleotidelikelihoodcore0 (1.8.4+dfsg.1-1) ... Selecting previously unselected package f2j. Preparing to unpack .../f2j_0.8.1+dfsg-2_amd64.deb ... Unpacking f2j (0.8.1+dfsg-2) ... Selecting previously unselected package libf2j-java. Preparing to unpack .../libf2j-java_0.8.1+dfsg-2_all.deb ... Unpacking libf2j-java (0.8.1+dfsg-2) ... Selecting previously unselected package libjlapack-java. Preparing to unpack .../libjlapack-java_0.8~dfsg-3_all.deb ... Unpacking libjlapack-java (0.8~dfsg-3) ... Selecting previously unselected package libnetlib-java. Preparing to unpack .../libnetlib-java_0.9.3-3_all.deb ... Unpacking libnetlib-java (0.9.3-3) ... Selecting previously unselected package beast-mcmc. Preparing to unpack .../beast-mcmc_1.8.4+dfsg.1-1_all.deb ... Unpacking beast-mcmc (1.8.4+dfsg.1-1) ... Selecting previously unselected package beast2-mcmc. Preparing to unpack .../beast2-mcmc_2.4.4+dfsg-1_all.deb ... Unpacking beast2-mcmc (2.4.4+dfsg-1) ... Preparing to unpack .../bedtools_2.26.0+dfsg-3_amd64.deb ... Unpacking bedtools (2.26.0+dfsg-3) over (2.21.0-1) ... Selecting previously unselected package berkeley-express. Preparing to unpack .../berkeley-express_1.5.1-3+b1_amd64.deb ... Unpacking berkeley-express (1.5.1-3+b1) ... Selecting previously unselected package bio-eagle. Preparing to unpack .../bio-eagle_2.3-3_amd64.deb ... Unpacking bio-eagle (2.3-3) ... Selecting previously unselected package bio-rainbow. Preparing to unpack .../bio-rainbow_2.0.4-1+b1_amd64.deb ... Unpacking bio-rainbow (2.0.4-1+b1) ... Selecting previously unselected package libservlet3.1-java. Preparing to unpack .../libservlet3.1-java_8.5.54-0+deb9u1_all.deb ... Unpacking libservlet3.1-java (8.5.54-0+deb9u1) ... Preparing to unpack .../libhsqldb-java_2.3.4-1_all.deb ... Unpacking libhsqldb-java (2.3.4-1) over (2.2.9+dfsg-4) ... Preparing to unpack .../biomaj_1.2.3-11_all.deb ... Unpacking biomaj (1.2.3-11) over (1.2.3-4) ... Warning, BioMAJ database for MySQL is not deleted by process removal. Preparing to unpack .../libjgoodies-forms-java_1.9.0-3_all.deb ... Unpacking libjgoodies-forms-java (1.9.0-3) over (1.6.0-4) ... Selecting previously unselected package libsaxonhe-java. Preparing to unpack .../libsaxonhe-java_9.5.1.1+dfsg-2_all.deb ... Unpacking libsaxonhe-java (9.5.1.1+dfsg-2) ... Preparing to unpack .../bioperl-run_1.7.1-3_all.deb ... Unpacking bioperl-run (1.7.1-3) over (1.6.9-2) ... Preparing to unpack .../libbio-perl-run-perl_1.7.1-3_all.deb ... Unpacking libbio-perl-run-perl (1.7.1-3) over (1.6.9-2) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../libaec0_0.3.2-1_amd64.deb ... Unpacking libaec0:amd64 (0.3.2-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../libsz2_0.3.2-1_amd64.deb ... Unpacking libsz2:amd64 (0.3.2-1) ... Selecting previously unselected package libhdf5-100:amd64. Preparing to unpack .../libhdf5-100_1.10.0-patch1+docs-3+deb9u1_amd64.deb ... Unpacking libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Selecting previously unselected package libhdf5-cpp-100:amd64. Preparing to unpack .../libhdf5-cpp-100_1.10.0-patch1+docs-3+deb9u1_amd64.deb ... Unpacking libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Selecting previously unselected package libpbbam:amd64. Preparing to unpack .../libpbbam_0.7.4+ds-1_amd64.deb ... Unpacking libpbbam:amd64 (0.7.4+ds-1) ... Selecting previously unselected package libpbdata:amd64. Preparing to unpack .../libpbdata_0~20161219-1_amd64.deb ... Unpacking libpbdata:amd64 (0~20161219-1) ... Selecting previously unselected package libpbihdf:amd64. Preparing to unpack .../libpbihdf_0~20161219-1_amd64.deb ... Unpacking libpbihdf:amd64 (0~20161219-1) ... Selecting previously unselected package libblasr:amd64. Preparing to unpack .../libblasr_0~20161219-1_amd64.deb ... Unpacking libblasr:amd64 (0~20161219-1) ... Selecting previously unselected package libpbseq. Preparing to unpack .../libpbseq_0~20161219-1_all.deb ... Unpacking libpbseq (0~20161219-1) ... Selecting previously unselected package blasr. Preparing to unpack .../blasr_5.3+0-1_amd64.deb ... Unpacking blasr (5.3+0-1) ... Selecting previously unselected package libjargs-java. Preparing to unpack .../libjargs-java_1.0.0-4_all.deb ... Unpacking libjargs-java (1.0.0-4) ... Selecting previously unselected package cgview. Preparing to unpack .../cgview_0.0.20100111-2_amd64.deb ... Unpacking cgview (0.0.20100111-2) ... Selecting previously unselected package libswing-layout-java. Preparing to unpack .../libswing-layout-java_1.0.4-4_all.deb ... Unpacking libswing-layout-java (1.0.4-4) ... Selecting previously unselected package brig. Preparing to unpack .../brig_0.95+dfsg-1_amd64.deb ... Unpacking brig (0.95+dfsg-1) ... Selecting previously unselected package libisl15:amd64. Preparing to unpack .../libisl15_0.18-1_amd64.deb ... Unpacking libisl15:amd64 (0.18-1) ... Selecting previously unselected package cpp-6. Preparing to unpack .../cpp-6_6.3.0-18+deb9u1_amd64.deb ... Unpacking cpp-6 (6.3.0-18+deb9u1) ... Preparing to unpack .../cpp_4%3a6.3.0-4_amd64.deb ... Unpacking cpp (4:6.3.0-4) over (4:4.9.2-2) ... Selecting previously unselected package libcc1-0:amd64. Preparing to unpack .../libcc1-0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libcc1-0:amd64 (6.3.0-18+deb9u1) ... Preparing to unpack .../libitm1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libitm1:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Selecting previously unselected package libasan3:amd64. Preparing to unpack .../libasan3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libasan3:amd64 (6.3.0-18+deb9u1) ... Preparing to unpack .../liblsan0_6.3.0-18+deb9u1_amd64.deb ... Unpacking liblsan0:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libtsan0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libtsan0:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libubsan0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libubsan0:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libcilkrts5_6.3.0-18+deb9u1_amd64.deb ... Unpacking libcilkrts5:amd64 (6.3.0-18+deb9u1) over (4.9.2-10+deb8u1) ... Selecting previously unselected package libmpx2:amd64. Preparing to unpack .../libmpx2_6.3.0-18+deb9u1_amd64.deb ... Unpacking libmpx2:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libgcc-6-dev:amd64. Preparing to unpack .../libgcc-6-dev_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package gcc-6. Preparing to unpack .../gcc-6_6.3.0-18+deb9u1_amd64.deb ... Unpacking gcc-6 (6.3.0-18+deb9u1) ... Preparing to unpack .../gcc_4%3a6.3.0-4_amd64.deb ... Removing old gcc doc directory. Unpacking gcc (4:6.3.0-4) over (4:4.9.2-2) ... Selecting previously unselected package libstdc++-6-dev:amd64. Preparing to unpack .../libstdc++-6-dev_6.3.0-18+deb9u1_amd64.deb ... Unpacking libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package g++-6. Preparing to unpack .../g++-6_6.3.0-18+deb9u1_amd64.deb ... Unpacking g++-6 (6.3.0-18+deb9u1) ... Preparing to unpack .../g++_4%3a6.3.0-4_amd64.deb ... Unpacking g++ (4:6.3.0-4) over (4:4.9.2-2) ... Preparing to unpack .../build-essential_12.3_amd64.deb ... Unpacking build-essential (12.3) over (11.7) ... Preparing to unpack .../cdbfasta_0.99-20100722-3_amd64.deb ... Unpacking cdbfasta (0.99-20100722-3) over (0.99-20100722-1) ... Selecting previously unselected package python3-jdcal. Preparing to unpack .../python3-jdcal_1.0-1.2~deb9u1_all.deb ... Unpacking python3-jdcal (1.0-1.2~deb9u1) ... Selecting previously unselected package python3-lxml. Preparing to unpack .../python3-lxml_3.7.1-1_amd64.deb ... Unpacking python3-lxml (3.7.1-1) ... Selecting previously unselected package python3-openpyxl. Preparing to unpack .../python3-openpyxl_2.3.0-3_all.deb ... Unpacking python3-openpyxl (2.3.0-3) ... Selecting previously unselected package libhat-trie0:amd64. Preparing to unpack .../libhat-trie0_0.0~git25f9e946-2_amd64.deb ... Unpacking libhat-trie0:amd64 (0.0~git25f9e946-2) ... Selecting previously unselected package libnlopt0:amd64. Preparing to unpack .../libnlopt0_2.4.2+dfsg-2+b2_amd64.deb ... Unpacking libnlopt0:amd64 (2.4.2+dfsg-2+b2) ... Selecting previously unselected package libssw0:amd64. Preparing to unpack .../libssw0_1.1-1+b1_amd64.deb ... Unpacking libssw0:amd64 (1.1-1+b1) ... Selecting previously unselected package python-joblib. Preparing to unpack .../python-joblib_0.10.3+git55-g660fe5d-1_all.deb ... Unpacking python-joblib (0.10.3+git55-g660fe5d-1) ... Selecting previously unselected package spades. Preparing to unpack .../spades_3.9.1+dfsg-1_amd64.deb ... Unpacking spades (3.9.1+dfsg-1) ... Selecting previously unselected package circlator. Preparing to unpack .../circlator_1.4.1-1_all.deb ... Unpacking circlator (1.4.1-1) ... Preparing to unpack .../clustalw_2.1+lgpl-5_amd64.deb ... Unpacking clustalw (2.1+lgpl-5) over (2.1+lgpl-4) ... Selecting previously unselected package codonw. Preparing to unpack .../codonw_1.4.4-3+b1_amd64.deb ... Unpacking codonw (1.4.4-3+b1) ... Preparing to unpack .../colord_1.3.3-2_amd64.deb ... Unpacking colord (1.3.3-2) over (1.2.1-1+b2) ... Selecting previously unselected package libgkarrays1. Preparing to unpack .../libgkarrays1_2.1.0+dfsg-1_amd64.deb ... Unpacking libgkarrays1 (2.1.0+dfsg-1) ... Selecting previously unselected package libgzstream0. Preparing to unpack .../libgzstream0_1.5+dfsg-2_amd64.deb ... Unpacking libgzstream0 (1.5+dfsg-2) ... Preparing to unpack .../jellyfish_2.2.6-1+b1_amd64.deb ... Unpacking jellyfish (2.2.6-1+b1) over (2.1.4-1) ... Preparing to unpack .../libjellyfish-2.0-2_2.2.6-1+b1_amd64.deb ... Unpacking libjellyfish-2.0-2 (2.2.6-1+b1) over (2.1.4-1) ... Selecting previously unselected package crac. Preparing to unpack .../crac_2.5.0+dfsg-1_amd64.deb ... Unpacking crac (2.5.0+dfsg-1) ... Preparing to unpack .../curl_7.52.1-5+deb9u10_amd64.deb ... Unpacking curl (7.52.1-5+deb9u10) over (7.38.0-4+deb8u11) ... Preparing to unpack .../libcurl3_7.52.1-5+deb9u10_amd64.deb ... Unpacking libcurl3:amd64 (7.52.1-5+deb9u10) over (7.38.0-4+deb8u11) ... Selecting previously unselected package python3-xopen. Preparing to unpack .../python3-xopen_0.1.1-1_all.deb ... Unpacking python3-xopen (0.1.1-1) ... Selecting previously unselected package python3-cutadapt. Preparing to unpack .../python3-cutadapt_1.12-2_amd64.deb ... Unpacking python3-cutadapt (1.12-2) ... Selecting previously unselected package cutadapt. Preparing to unpack .../cutadapt_1.12-2_all.deb ... Unpacking cutadapt (1.12-2) ... Selecting previously unselected package daligner. Preparing to unpack .../daligner_1.0+20161119-1_amd64.deb ... Unpacking daligner (1.0+20161119-1) ... Selecting previously unselected package dascrubber. Preparing to unpack .../dascrubber_0~20160601-2_amd64.deb ... Unpacking dascrubber (0~20160601-2) ... Selecting previously unselected package dawg. Preparing to unpack .../dawg_1.2-1+b1_amd64.deb ... Unpacking dawg (1.2-1+b1) ... Selecting previously unselected package dazzdb. Preparing to unpack .../dazzdb_1.0+20161112-2_amd64.deb ... Unpacking dazzdb (1.0+20161112-2) ... Selecting previously unselected package libmatthew-debug-java. Preparing to unpack .../libmatthew-debug-java_0.8-1_all.deb ... Unpacking libmatthew-debug-java (0.8-1) ... Selecting previously unselected package libunixsocket-java. Preparing to unpack .../libunixsocket-java_0.8-1_amd64.deb ... Unpacking libunixsocket-java (0.8-1) ... Selecting previously unselected package libdbus-java. Preparing to unpack .../libdbus-java_2.8-6_all.deb ... Unpacking libdbus-java (2.8-6) ... Selecting previously unselected package dbus-java-bin. Preparing to unpack .../dbus-java-bin_2.8-6_all.deb ... Unpacking dbus-java-bin (2.8-6) ... Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_14_all.deb ... Unpacking dh-autoreconf (14) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.59-1+deb9u1_all.deb ... Unpacking libarchive-zip-perl (1.59-1+deb9u1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.034-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.034-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.034-1_all.deb ... Unpacking dh-strip-nondeterminism (0.034-1) ... Preparing to unpack .../debhelper_10.2.5_all.deb ... Unpacking debhelper (10.2.5) over (9.20150101+deb8u2) ... Selecting previously unselected package dindel. Preparing to unpack .../dindel_1.01+dfsg-4+b1_amd64.deb ... Unpacking dindel (1.01+dfsg-4+b1) ... Selecting previously unselected package dirmngr. Preparing to unpack .../dirmngr_2.1.18-8~deb9u4_amd64.deb ... Unpacking dirmngr (2.1.18-8~deb9u4) ... Preparing to unpack .../discosnp_1.2.6-1+b2_amd64.deb ... Unpacking discosnp (1.2.6-1+b2) over (1.2.5-1) ... Preparing to unpack .../dnaclust_3-4+b2_amd64.deb ... Unpacking dnaclust (3-4+b2) over (3-2+b1) ... Preparing to unpack .../dssp_2.2.1-3+b2_amd64.deb ... Unpacking dssp (2.2.1-3+b2) over (2.2.1-2+b1) ... Preparing to unpack .../dvipng_1.14-2+b3_amd64.deb ... Unpacking dvipng (1.14-2+b3) over (1.14-2+b1) ... Selecting previously unselected package dwgsim. Preparing to unpack .../dwgsim_0.1.11-3+b1_amd64.deb ... Unpacking dwgsim (0.1.11-3+b1) ... Preparing to unpack .../r-base-core_3.3.3-1_amd64.deb ... Unpacking r-base-core (3.3.3-1) over (3.1.1-1+deb8u1) ... Preparing to unpack .../r-cran-getopt_1.20.0-2_amd64.deb ... Unpacking r-cran-getopt (1.20.0-2) over (1.20.0-1) ... Preparing to unpack .../r-cran-chron_2.3-49-1_amd64.deb ... Unpacking r-cran-chron (2.3-49-1) over (2.3-45-1) ... Preparing to unpack .../r-cran-lattice_0.20-34-1_amd64.deb ... Unpacking r-cran-lattice (0.20-34-1) over (0.20-29-1) ... Preparing to unpack .../r-cran-cluster_2.0.5-1_amd64.deb ... Unpacking r-cran-cluster (2.0.5-1) over (1.15.3-1) ... Preparing to unpack .../r-cran-matrix_1.2-7.1-1_amd64.deb ... Unpacking r-cran-matrix (1.2-7.1-1) over (1.1-4-1) ... Preparing to unpack .../r-cran-survival_2.40-1-1_amd64.deb ... Unpacking r-cran-survival (2.40-1-1) over (2.37-7-1) ... Preparing to unpack .../r-cran-formula_1.2-1-1_all.deb ... Unpacking r-cran-formula (1.2-1-1) over (1.1-2-1) ... Preparing to unpack .../r-cran-rpart_4.1-10-2_amd64.deb ... Unpacking r-cran-rpart (4.1-10-2) over (4.1-8-1) ... Preparing to unpack .../r-cran-rcolorbrewer_1.1-2-1_all.deb ... Unpacking r-cran-rcolorbrewer (1.1-2-1) over (1.0-5-2) ... Preparing to unpack .../r-cran-latticeextra_0.6-28-2_amd64.deb ... Unpacking r-cran-latticeextra (0.6-28-2) over (0.6-26-1) ... Selecting previously unselected package r-cran-acepack. Preparing to unpack .../r-cran-acepack_1.4.1-1_amd64.deb ... Unpacking r-cran-acepack (1.4.1-1) ... Preparing to unpack .../r-cran-digest_0.6.11-1_amd64.deb ... Unpacking r-cran-digest (0.6.11-1) over (0.6.4-1) ... Preparing to unpack .../r-cran-gtable_0.2.0-1_all.deb ... Unpacking r-cran-gtable (0.2.0-1) over (0.1.2-1.1) ... Preparing to unpack .../r-cran-mass_7.3-45-1_amd64.deb ... Unpacking r-cran-mass (7.3-45-1) over (7.3-34-1) ... Preparing to unpack .../littler_0.3.1-1_all.deb ... Unpacking littler (0.3.1-1) over (0.2.1-1) ... Selecting previously unselected package r-cran-littler. Preparing to unpack .../r-cran-littler_0.3.1-1_amd64.deb ... Unpacking r-cran-littler (0.3.1-1) ... Preparing to unpack .../r-cran-pkgkitten_0.1.4-1_all.deb ... Unpacking r-cran-pkgkitten (0.1.4-1) over (0.1.2-1) ... Preparing to unpack .../r-cran-rcpp_0.12.9-1_amd64.deb ... Unpacking r-cran-rcpp (0.12.9-1) over (0.11.3-1) ... Preparing to unpack .../r-cran-plyr_1.8.4-1_amd64.deb ... Unpacking r-cran-plyr (1.8.4-1) over (1.8.1-2) ... Selecting previously unselected package r-cran-stringi. Preparing to unpack .../r-cran-stringi_1.1.2-1_amd64.deb ... Unpacking r-cran-stringi (1.1.2-1) ... Selecting previously unselected package r-cran-magrittr. Preparing to unpack .../r-cran-magrittr_1.5-3_amd64.deb ... Unpacking r-cran-magrittr (1.5-3) ... Preparing to unpack .../r-cran-stringr_1.1.0-1_all.deb ... Unpacking r-cran-stringr (1.1.0-1) over (0.6.2-2) ... Preparing to unpack .../r-cran-reshape2_1.4.2-1_amd64.deb ... Unpacking r-cran-reshape2 (1.4.2-1) over (1.4-1) ... Preparing to unpack .../r-cran-colorspace_1.3-2-1_amd64.deb ... Unpacking r-cran-colorspace (1.3-2-1) over (1.2-4-1) ... Preparing to unpack .../r-cran-munsell_0.4.3-1_all.deb ... Unpacking r-cran-munsell (0.4.3-1) over (0.4.2-1) ... Preparing to unpack .../r-cran-scales_0.4.1-1_amd64.deb ... Unpacking r-cran-scales (0.4.1-1) over (0.2.4-1) ... Selecting previously unselected package r-cran-assertthat. Preparing to unpack .../r-cran-assertthat_0.1-1_all.deb ... Unpacking r-cran-assertthat (0.1-1) ... Selecting previously unselected package r-cran-lazyeval. Preparing to unpack .../r-cran-lazyeval_0.2.0-1_amd64.deb ... Unpacking r-cran-lazyeval (0.2.0-1) ... Selecting previously unselected package r-cran-tibble. Preparing to unpack .../r-cran-tibble_1.2-1_amd64.deb ... Unpacking r-cran-tibble (1.2-1) ... Preparing to unpack .../r-cran-ggplot2_2.2.1-2_all.deb ... Unpacking r-cran-ggplot2 (2.2.1-2) over (1.0.0-1) ... Selecting previously unselected package r-cran-gridextra. Preparing to unpack .../r-cran-gridextra_2.2.1-1_all.deb ... Unpacking r-cran-gridextra (2.2.1-1) ... Selecting previously unselected package r-cran-data.table. Preparing to unpack .../r-cran-data.table_1.10.0-1_amd64.deb ... Unpacking r-cran-data.table (1.10.0-1) ... Selecting previously unselected package r-cran-htmltools. Preparing to unpack .../r-cran-htmltools_0.3.5-2_amd64.deb ... Unpacking r-cran-htmltools (0.3.5-2) ... Preparing to unpack .../r-cran-evaluate_0.10-1_all.deb ... Unpacking r-cran-evaluate (0.10-1) over (0.5.5-1) ... Selecting previously unselected package libjs-highlight.js. Preparing to unpack .../libjs-highlight.js_8.2+ds-5_all.deb ... Unpacking libjs-highlight.js (8.2+ds-5) ... Selecting previously unselected package r-cran-highr. Preparing to unpack .../r-cran-highr_0.6-1_all.deb ... Unpacking r-cran-highr (0.6-1) ... Selecting previously unselected package fonts-mathjax. Preparing to unpack .../fonts-mathjax_2.7.0-2_all.deb ... Unpacking fonts-mathjax (2.7.0-2) ... Selecting previously unselected package libjs-mathjax. Preparing to unpack .../libjs-mathjax_2.7.0-2_all.deb ... Unpacking libjs-mathjax (2.7.0-2) ... Selecting previously unselected package r-cran-mime. Preparing to unpack .../r-cran-mime_0.5-1_amd64.deb ... Unpacking r-cran-mime (0.5-1) ... Selecting previously unselected package r-cran-markdown. Preparing to unpack .../r-cran-markdown_0.7.7-1_amd64.deb ... Unpacking r-cran-markdown (0.7.7-1) ... Selecting previously unselected package r-cran-yaml. Preparing to unpack .../r-cran-yaml_2.1.14-1_amd64.deb ... Unpacking r-cran-yaml (2.1.14-1) ... Selecting previously unselected package r-cran-knitr. Preparing to unpack .../r-cran-knitr_1.15.1-1_amd64.deb ... Unpacking r-cran-knitr (1.15.1-1) ... Selecting previously unselected package r-cran-viridis. Preparing to unpack .../r-cran-viridis_0.3.4-1_all.deb ... Unpacking r-cran-viridis (0.3.4-1) ... Selecting previously unselected package r-cran-htmltable. Preparing to unpack .../r-cran-htmltable_1.7-2_all.deb ... Unpacking r-cran-htmltable (1.7-2) ... Preparing to unpack .../r-cran-base64enc_0.1-3-1_amd64.deb ... Unpacking r-cran-base64enc (0.1-3-1) over (0.1-2-1) ... Preparing to unpack .../r-cran-hmisc_4.0-2-1_amd64.deb ... Unpacking r-cran-hmisc (4.0-2-1) over (3.14-5-1) ... Selecting previously unselected package ea-utils. Preparing to unpack .../ea-utils_1.1.2+dfsg-4_amd64.deb ... Unpacking ea-utils (1.1.2+dfsg-4) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../python3-reportlab-accel_3.3.0-2+deb9u1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../python3-reportlab_3.3.0-2+deb9u1_all.deb ... Unpacking python3-reportlab (3.3.0-2+deb9u1) ... Selecting previously unselected package ecopcr. Preparing to unpack .../ecopcr_0.5.0+dfsg-1_amd64.deb ... Unpacking ecopcr (0.5.0+dfsg-1) ... Selecting previously unselected package libtmglib3. Preparing to unpack .../libtmglib3_3.7.0-2_amd64.deb ... Unpacking libtmglib3 (3.7.0-2) ... Selecting previously unselected package liblapacke. Preparing to unpack .../liblapacke_3.7.0-2_amd64.deb ... Unpacking liblapacke (3.7.0-2) ... Selecting previously unselected package eigensoft. Preparing to unpack .../eigensoft_6.1.4+dfsg-1+b1_amd64.deb ... Unpacking eigensoft (6.1.4+dfsg-1+b1) ... Selecting previously unselected package exim4-config. Preparing to unpack .../exim4-config_4.89-2+deb9u7_all.deb ... Unpacking exim4-config (4.89-2+deb9u7) ... Selecting previously unselected package exim4-base. Preparing to unpack .../exim4-base_4.89-2+deb9u7_amd64.deb ... Unpacking exim4-base (4.89-2+deb9u7) ... Selecting previously unselected package exim4-daemon-light. Preparing to unpack .../exim4-daemon-light_4.89-2+deb9u7_amd64.deb ... Unpacking exim4-daemon-light (4.89-2+deb9u7) ... Selecting previously unselected package exim4. Preparing to unpack .../exim4_4.89-2+deb9u7_all.deb ... Unpacking exim4 (4.89-2+deb9u7) ... Selecting previously unselected package python-networkx. Preparing to unpack .../python-networkx_1.11-2_all.deb ... Unpacking python-networkx (1.11-2) ... Selecting previously unselected package time. Preparing to unpack .../time_1.7-25.1+b1_amd64.deb ... Unpacking time (1.7-25.1+b1) ... Selecting previously unselected package falcon. Preparing to unpack .../falcon_1.8.6-1.1_amd64.deb ... Unpacking falcon (1.8.6-1.1) ... Selecting previously unselected package libdisorder0:amd64. Preparing to unpack .../libdisorder0_0.0.2-1_amd64.deb ... Unpacking libdisorder0:amd64 (0.0.2-1) ... Selecting previously unselected package libfastahack0. Preparing to unpack .../libfastahack0_0.0+20160702-1+b1_amd64.deb ... Unpacking libfastahack0 (0.0+20160702-1+b1) ... Selecting previously unselected package fastahack. Preparing to unpack .../fastahack_0.0+20160702-1+b1_amd64.deb ... Unpacking fastahack (0.0+20160702-1+b1) ... Selecting previously unselected package fastml. Preparing to unpack .../fastml_3.1-3_amd64.deb ... Unpacking fastml (3.1-3) ... Preparing to unpack .../fastqc_0.11.5+dfsg-6_all.deb ... Unpacking fastqc (0.11.5+dfsg-6) over (0.11.2+dfsg-3) ... Selecting previously unselected package r-mathlib. Preparing to unpack .../r-mathlib_3.3.3-1_amd64.deb ... Unpacking r-mathlib (3.3.3-1) ... Selecting previously unselected package fastqtl. Preparing to unpack .../fastqtl_2.184+dfsg-5_amd64.deb ... Unpacking fastqtl (2.184+dfsg-5) ... Preparing to unpack .../figtree_1.4.2+dfsg-2_all.deb ... Unpacking figtree (1.4.2+dfsg-2) over (1.4-2) ... Preparing to unpack .../filo_1.1.0-3+b1_amd64.deb ... Unpacking filo (1.1.0-3+b1) over (1.1+2011123001.1) ... Preparing to unpack .../flexbar_2.50-2+b1_amd64.deb ... Unpacking flexbar (2.50-2+b1) over (2.50-1) ... Selecting previously unselected package fml-asm. Preparing to unpack .../fml-asm_0.1-2+b1_amd64.deb ... Unpacking fml-asm (0.1-2+b1) ... Selecting previously unselected package fonts-noto-mono. Preparing to unpack .../fonts-noto-mono_20161116-1_all.deb ... Unpacking fonts-noto-mono (20161116-1) ... Selecting previously unselected package libavalon-framework-java. Preparing to unpack .../libavalon-framework-java_4.2.0-9_all.deb ... Unpacking libavalon-framework-java (4.2.0-9) ... Selecting previously unselected package libfontbox-java. Preparing to unpack .../libfontbox-java_1%3a1.8.12-1_all.deb ... Unpacking libfontbox-java (1:1.8.12-1) ... Selecting previously unselected package libfop-java. Preparing to unpack .../libfop-java_1%3a2.1-6_all.deb ... Unpacking libfop-java (1:2.1-6) ... Selecting previously unselected package fop. Preparing to unpack .../archives/fop_1%3a2.1-6_all.deb ... Unpacking fop (1:2.1-6) ... Selecting previously unselected package fsa. Preparing to unpack .../fsa_1.15.9+dfsg-3_amd64.deb ... Unpacking fsa (1.15.9+dfsg-3) ... Selecting previously unselected package libsdsl3:amd64. Preparing to unpack .../libsdsl3_2.0.3-4_amd64.deb ... Unpacking libsdsl3:amd64 (2.0.3-4) ... Selecting previously unselected package fsm-lite. Preparing to unpack .../fsm-lite_1.0-2_amd64.deb ... Unpacking fsm-lite (1.0-2) ... Selecting previously unselected package libncl1. Preparing to unpack .../libncl1_2.1.18+dfsg-2+b1_amd64.deb ... Unpacking libncl1 (2.1.18+dfsg-2+b1) ... Selecting previously unselected package garli. Preparing to unpack .../archives/garli_2.1-1_amd64.deb ... Unpacking garli (2.1-1) ... Selecting previously unselected package libbio-coordinate-perl. Preparing to unpack .../libbio-coordinate-perl_1.7.1-1_all.deb ... Unpacking libbio-coordinate-perl (1.7.1-1) ... Preparing to unpack .../gbrowse_2.56+dfsg-2_all.deb ... Unpacking gbrowse (2.56+dfsg-2) over (2.54+dfsg-3) ... Selecting previously unselected package libgfortran-6-dev:amd64. Preparing to unpack .../libgfortran-6-dev_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran-6-dev:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package gfortran-6. Preparing to unpack .../gfortran-6_6.3.0-18+deb9u1_amd64.deb ... Unpacking gfortran-6 (6.3.0-18+deb9u1) ... Preparing to unpack .../gfortran_4%3a6.3.0-4_amd64.deb ... Unpacking gfortran (4:6.3.0-4) over (4:4.9.2-2) ... Selecting previously unselected package libsc-data. Preparing to unpack .../libsc-data_2.3.1-18+deb9u1_all.deb ... Unpacking libsc-data (2.3.1-18+deb9u1) ... Selecting previously unselected package libint1. Preparing to unpack .../libint1_1.1.6-2+b1_amd64.deb ... Unpacking libint1 (1.1.6-2+b1) ... Selecting previously unselected package libsc7v5. Preparing to unpack .../libsc7v5_2.3.1-18+deb9u1_amd64.deb ... Unpacking libsc7v5 (2.3.1-18+deb9u1) ... Selecting previously unselected package mpqc. Preparing to unpack .../mpqc_2.3.1-18+deb9u1_amd64.deb ... Unpacking mpqc (2.3.1-18+deb9u1) ... Selecting previously unselected package libmopac7-1gf. Preparing to unpack .../libmopac7-1gf_1.15-6+b1_amd64.deb ... Unpacking libmopac7-1gf (1.15-6+b1) ... Selecting previously unselected package libghemical-data. Preparing to unpack .../libghemical-data_3.0.0-4.1_all.deb ... Unpacking libghemical-data (3.0.0-4.1) ... Selecting previously unselected package libghemical5v5. Preparing to unpack .../libghemical5v5_3.0.0-4.1+b3_amd64.deb ... Unpacking libghemical5v5 (3.0.0-4.1+b3) ... Selecting previously unselected package liboglappth2. Preparing to unpack .../liboglappth2_1.0.0-2_amd64.deb ... Unpacking liboglappth2 (1.0.0-2) ... Selecting previously unselected package libopenbabel4v5. Preparing to unpack .../libopenbabel4v5_2.3.2+dfsg-3_amd64.deb ... Unpacking libopenbabel4v5 (2.3.2+dfsg-3) ... Selecting previously unselected package ghemical. Preparing to unpack .../ghemical_3.0.0-2_amd64.deb ... Unpacking ghemical (3.0.0-2) ... Selecting previously unselected package libsuitesparseconfig4:amd64. Preparing to unpack .../libsuitesparseconfig4_1%3a4.5.4-1_amd64.deb ... Unpacking libsuitesparseconfig4:amd64 (1:4.5.4-1) ... Selecting previously unselected package libamd2:amd64. Preparing to unpack .../libamd2_1%3a4.5.4-1_amd64.deb ... Unpacking libamd2:amd64 (1:4.5.4-1) ... Selecting previously unselected package libcolamd2:amd64. Preparing to unpack .../libcolamd2_1%3a4.5.4-1_amd64.deb ... Unpacking libcolamd2:amd64 (1:4.5.4-1) ... Selecting previously unselected package libglpk40:amd64. Preparing to unpack .../libglpk40_4.61-1_amd64.deb ... Unpacking libglpk40:amd64 (4.61-1) ... Preparing to unpack .../glpk-utils_4.61-1_amd64.deb ... Unpacking glpk-utils (4.61-1) over (4.55-1) ... Selecting previously unselected package gnustep-dl2-postgresql-adaptor. Preparing to unpack .../gnustep-dl2-postgresql-adaptor_0.12.0-15.1_amd64.deb ... Unpacking gnustep-dl2-postgresql-adaptor (0.12.0-15.1) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../ttf-bitstream-vera_1.10-8_all.deb ... Unpacking ttf-bitstream-vera (1.10-8) ... Preparing to unpack .../python-matplotlib-data_2.0.0+dfsg1-2_all.deb ... Unpacking python-matplotlib-data (2.0.0+dfsg1-2) over (1.4.2-3.1) ... Selecting previously unselected package python-cycler. Preparing to unpack .../python-cycler_0.10.0-1_all.deb ... Unpacking python-cycler (0.10.0-1) ... Selecting previously unselected package python-functools32. Preparing to unpack .../python-functools32_3.2.3.2-3_all.deb ... Unpacking python-functools32 (3.2.3.2-3) ... Selecting previously unselected package python-subprocess32. Preparing to unpack .../python-subprocess32_3.2.7-2_amd64.deb ... Unpacking python-subprocess32 (3.2.7-2) ... Preparing to unpack .../python-matplotlib_2.0.0+dfsg1-2_amd64.deb ... Unpacking python-matplotlib (2.0.0+dfsg1-2) over (1.4.2-3.1) ... Selecting previously unselected package graphlan. Preparing to unpack .../graphlan_1.1-2_all.deb ... Unpacking graphlan (1.1-2) ... Selecting previously unselected package libann0. Preparing to unpack .../libann0_1.1.2+doc-6_amd64.deb ... Unpacking libann0 (1.1.2+doc-6) ... Selecting previously unselected package libgts-0.7-5:amd64. Preparing to unpack .../libgts-0.7-5_0.7.6+darcs121130-4_amd64.deb ... Unpacking libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Preparing to unpack .../libgvc6_2.38.0-17_amd64.deb ... Unpacking libgvc6 (2.38.0-17) over (2.38.0-7) ... Preparing to unpack .../graphviz_2.38.0-17_amd64.deb ... Unpacking graphviz (2.38.0-17) over (2.38.0-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../python3-numpy_1%3a1.12.1-3_amd64.deb ... Unpacking python3-numpy (1:1.12.1-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../python3-biopython_1.68+dfsg-3_amd64.deb ... Unpacking python3-biopython (1.68+dfsg-3) ... Selecting previously unselected package gubbins. Preparing to unpack .../gubbins_2.2.0-1_amd64.deb ... Unpacking gubbins (2.2.0-1) ... Selecting previously unselected package guile-2.0-libs:amd64. Preparing to unpack .../guile-2.0-libs_2.0.13+1-4_amd64.deb ... Unpacking guile-2.0-libs:amd64 (2.0.13+1-4) ... Selecting previously unselected package gwama. Preparing to unpack .../gwama_2.2.2+dfsg-1_amd64.deb ... Unpacking gwama (2.2.2+dfsg-1) ... Selecting previously unselected package harvest-tools. Preparing to unpack .../harvest-tools_1.3-1_amd64.deb ... Unpacking harvest-tools (1.3-1) ... Selecting previously unselected package hdf5-tools. Preparing to unpack .../hdf5-tools_1.10.0-patch1+docs-3+deb9u1_amd64.deb ... Unpacking hdf5-tools (1.10.0-patch1+docs-3+deb9u1) ... Selecting previously unselected package hilive. Preparing to unpack .../hilive_0.3-2_amd64.deb ... Unpacking hilive (0.3-2) ... Selecting previously unselected package hisat2. Preparing to unpack .../hisat2_2.0.5-1_amd64.deb ... Unpacking hisat2 (2.0.5-1) ... Selecting previously unselected package hyphy-common. Preparing to unpack .../hyphy-common_2.2.7+dfsg-1_all.deb ... Unpacking hyphy-common (2.2.7+dfsg-1) ... Selecting previously unselected package hyphy-mpi. Preparing to unpack .../hyphy-mpi_2.2.7+dfsg-1+b2_amd64.deb ... Unpacking hyphy-mpi (2.2.7+dfsg-1+b2) ... Selecting previously unselected package hyphygui. Preparing to unpack .../hyphygui_2.2.7+dfsg-1+b2_amd64.deb ... Unpacking hyphygui (2.2.7+dfsg-1+b2) ... Selecting previously unselected package icc-profiles-free. Preparing to unpack .../icc-profiles-free_2.0.1+dfsg-1_all.deb ... Unpacking icc-profiles-free (2.0.1+dfsg-1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../icu-devtools_57.1-6+deb9u4_amd64.deb ... Unpacking icu-devtools (57.1-6+deb9u4) ... Preparing to unpack .../idba_1.1.3-1_amd64.deb ... Unpacking idba (1.1.3-1) over (1.1.2-1) ... Preparing to unpack .../imagemagick_8%3a6.9.7.4+dfsg-11+deb9u8_amd64.deb ... Unpacking imagemagick (8:6.9.7.4+dfsg-11+deb9u8) over (8:6.8.9.9-5+deb8u12) ... Preparing to unpack .../imagemagick-6.q16_8%3a6.9.7.4+dfsg-11+deb9u8_amd64.deb ... Unpacking imagemagick-6.q16 (8:6.9.7.4+dfsg-11+deb9u8) over (8:6.8.9.9-5+deb8u12) ... Selecting previously unselected package indelible. Preparing to unpack .../indelible_1.03-2+b1_amd64.deb ... Unpacking indelible (1.03-2+b1) ... Selecting previously unselected package python-ptyprocess. Preparing to unpack .../python-ptyprocess_0.5.1-1_all.deb ... Unpacking python-ptyprocess (0.5.1-1) ... Preparing to unpack .../python-pexpect_4.2.1-1_all.deb ... Unpacking python-pexpect (4.2.1-1) over (3.2-1) ... Selecting previously unselected package python-pathlib2. Preparing to unpack .../python-pathlib2_2.2.0+really2.1.0-1_all.deb ... Unpacking python-pathlib2 (2.2.0+really2.1.0-1) ... Selecting previously unselected package python-pickleshare. Preparing to unpack .../python-pickleshare_0.7.4-1_all.deb ... Unpacking python-pickleshare (0.7.4-1) ... Selecting previously unselected package python-wcwidth. Preparing to unpack .../python-wcwidth_0.1.7+dfsg1-1_all.deb ... Unpacking python-wcwidth (0.1.7+dfsg1-1) ... Selecting previously unselected package python-prompt-toolkit. Preparing to unpack .../python-prompt-toolkit_1.0.9-1_all.deb ... Unpacking python-prompt-toolkit (1.0.9-1) ... Selecting previously unselected package python-ipython-genutils. Preparing to unpack .../python-ipython-genutils_0.1.0-2_all.deb ... Unpacking python-ipython-genutils (0.1.0-2) ... Selecting previously unselected package python-enum34. Preparing to unpack .../python-enum34_1.1.6-1_all.deb ... Unpacking python-enum34 (1.1.6-1) ... Selecting previously unselected package python-traitlets. Preparing to unpack .../python-traitlets_4.3.1-1_all.deb ... Unpacking python-traitlets (4.3.1-1) ... Selecting previously unselected package python-backports-shutil-get-terminal-size. Preparing to unpack .../python-backports-shutil-get-terminal-size_1.0.0-3_all.deb ... Unpacking python-backports-shutil-get-terminal-size (1.0.0-3) ... Preparing to unpack .../ipython_5.1.0-3_all.deb ... Unpacking ipython (5.1.0-3) over (2.3.0-2) ... Selecting previously unselected package python-ipython. Preparing to unpack .../python-ipython_5.1.0-3_all.deb ... Unpacking python-ipython (5.1.0-3) ... Selecting previously unselected package iqtree. Preparing to unpack .../iqtree_1.5.3+dfsg-2_amd64.deb ... Unpacking iqtree (1.5.3+dfsg-2) ... Preparing to unpack .../python-sympy_1.0-3_all.deb ... Unpacking python-sympy (1.0-3) over (0.7.5-3) ... Selecting previously unselected package isympy-common. Preparing to unpack .../isympy-common_1.0-3_all.deb ... Unpacking isympy-common (1.0-3) ... Selecting previously unselected package isympy. Preparing to unpack .../archives/isympy_1.0-3_all.deb ... Unpacking isympy (1.0-3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../python3-decorator_4.0.11-1_all.deb ... Unpacking python3-decorator (4.0.11-1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../python3-networkx_1.11-2_all.deb ... Unpacking python3-networkx (1.11-2) ... Selecting previously unselected package kmc. Preparing to unpack .../kmc_2.3+dfsg-5_amd64.deb ... Unpacking kmc (2.3+dfsg-5) ... Selecting previously unselected package iva. Preparing to unpack .../iva_1.0.8+ds-1_amd64.deb ... Unpacking iva (1.0.8+ds-1) ... Selecting previously unselected package jaligner. Preparing to unpack .../jaligner_1.0+dfsg-4_all.deb ... Unpacking jaligner (1.0+dfsg-4) ... Selecting previously unselected package libpal-java. Preparing to unpack .../libpal-java_1.5.1+dfsg-2_all.deb ... Unpacking libpal-java (1.5.1+dfsg-2) ... Selecting previously unselected package jmodeltest. Preparing to unpack .../jmodeltest_2.1.10+dfsg-5_all.deb ... Unpacking jmodeltest (2.1.10+dfsg-5) ... Selecting previously unselected package libnaga-java. Preparing to unpack .../libnaga-java_3.0+svn80-1_all.deb ... Unpacking libnaga-java (3.0+svn80-1) ... Preparing to unpack .../libjmol-java_14.6.4+2016.11.05+dfsg1-3_all.deb ... Unpacking libjmol-java (14.6.4+2016.11.05+dfsg1-3) over (12.2.32+dfsg2-1) ... Preparing to unpack .../jmol_14.6.4+2016.11.05+dfsg1-3_all.deb ... Unpacking jmol (14.6.4+2016.11.05+dfsg1-3) over (12.2.32+dfsg2-1) ... Selecting previously unselected package python-alabaster. Preparing to unpack .../python-alabaster_0.7.8-1_all.deb ... Unpacking python-alabaster (0.7.8-1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../python-babel-localedata_2.3.4+dfsg.1-2_all.deb ... Unpacking python-babel-localedata (2.3.4+dfsg.1-2) ... Selecting previously unselected package python-babel. Preparing to unpack .../python-babel_2.3.4+dfsg.1-2_all.deb ... Unpacking python-babel (2.3.4+dfsg.1-2) ... Selecting previously unselected package python-imagesize. Preparing to unpack .../python-imagesize_0.7.1-1_all.deb ... Unpacking python-imagesize (0.7.1-1) ... Preparing to unpack .../python-sphinx_1.4.9-2_all.deb ... Unpacking python-sphinx (1.4.9-2) over (1.2.3+dfsg-1) ... Preparing to unpack .../sphinx-common_1.4.9-2_all.deb ... Unpacking sphinx-common (1.4.9-2) over (1.2.3+dfsg-1) ... Preparing to unpack .../libjs-sphinxdoc_1.4.9-2_all.deb ... Unpacking libjs-sphinxdoc (1.4.9-2) over (1.2.3+dfsg-1) ... Selecting previously unselected package khmer-common. Preparing to unpack .../khmer-common_2.0+dfsg-10_all.deb ... Unpacking khmer-common (2.0+dfsg-10) ... Selecting previously unselected package python3-bz2file. Preparing to unpack .../python3-bz2file_0.98-1_all.deb ... Unpacking python3-bz2file (0.98-1) ... Selecting previously unselected package python3-screed. Preparing to unpack .../python3-screed_0.9-2_all.deb ... Unpacking python3-screed (0.9-2) ... Selecting previously unselected package khmer:amd64. Preparing to unpack .../khmer_2.0+dfsg-10_amd64.deb ... Unpacking khmer:amd64 (2.0+dfsg-10) ... Preparing to unpack .../python-h5py_2.7.0-1_amd64.deb ... Unpacking python-h5py (2.7.0-1) over (2.2.1-1.1+b1) ... Selecting previously unselected package python-avro. Preparing to unpack .../python-avro_1.8.1+dfsg-1_all.deb ... Unpacking python-avro (1.8.1+dfsg-1) ... Selecting previously unselected package python-iso8601. Preparing to unpack .../python-iso8601_0.1.11-1_all.deb ... Unpacking python-iso8601 (0.1.11-1) ... Selecting previously unselected package python-urllib3. Preparing to unpack .../python-urllib3_1.19.1-1_all.deb ... Unpacking python-urllib3 (1.19.1-1) ... Selecting previously unselected package python-requests. Preparing to unpack .../python-requests_2.12.4-1_all.deb ... Unpacking python-requests (2.12.4-1) ... Selecting previously unselected package python-pbcommand. Preparing to unpack .../python-pbcommand_0.5.3-1_all.deb ... Unpacking python-pbcommand (0.5.3-1) ... Preparing to unpack .../python-pysam_0.10.0+ds-2_amd64.deb ... Unpacking python-pysam (0.10.0+ds-2) over (0.7.7-1) ... Selecting previously unselected package python-pbcore. Preparing to unpack .../python-pbcore_1.2.11+dfsg-1_all.deb ... Unpacking python-pbcore (1.2.11+dfsg-1) ... Selecting previously unselected package kineticstools-data. Preparing to unpack .../kineticstools-data_0.6.1+20161222-1_all.deb ... Unpacking kineticstools-data (0.6.1+20161222-1) ... Selecting previously unselected package python-kineticstools. Preparing to unpack .../python-kineticstools_0.6.1+20161222-1_amd64.deb ... Unpacking python-kineticstools (0.6.1+20161222-1) ... Selecting previously unselected package kineticstools. Preparing to unpack .../kineticstools_0.6.1+20161222-1_all.deb ... Unpacking kineticstools (0.6.1+20161222-1) ... Selecting previously unselected package king-probe. Preparing to unpack .../king-probe_2.13.110909-2_amd64.deb ... Unpacking king-probe (2.13.110909-2) ... Preparing to unpack .../kissplice_2.4.0-p1-1_amd64.deb ... Unpacking kissplice (2.4.0-p1-1) over (2.2.1-3) ... Selecting previously unselected package sim4db. Preparing to unpack .../sim4db_0~20150903+r2013-3_amd64.deb ... Unpacking sim4db (0~20150903+r2013-3) ... Selecting previously unselected package kmer. Preparing to unpack .../kmer_0~20150903+r2013-3_all.deb ... Unpacking kmer (0~20150903+r2013-3) ... Selecting previously unselected package kraken. Preparing to unpack .../kraken_0.10.5~beta-2+b1_amd64.deb ... Unpacking kraken (0.10.5~beta-2+b1) ... Selecting previously unselected package lambda-align. Preparing to unpack .../lambda-align_1.0.1-2_amd64.deb ... Unpacking lambda-align (1.0.1-2) ... Selecting previously unselected package libsensors4:amd64. Preparing to unpack .../libsensors4_1%3a3.4.0-4_amd64.deb ... Unpacking libsensors4:amd64 (1:3.4.0-4) ... Selecting previously unselected package sysstat. Preparing to unpack .../sysstat_11.4.3-2_amd64.deb ... Unpacking sysstat (11.4.3-2) ... Selecting previously unselected package parallel. Preparing to unpack .../parallel_20161222-1_all.deb ... Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Unpacking parallel (20161222-1) ... Preparing to unpack .../last-align_830-1_amd64.deb ... Unpacking last-align (830-1) over (490-1) ... Selecting previously unselected package lefse. Preparing to unpack .../lefse_1.0+20160802-1_all.deb ... Unpacking lefse (1.0+20160802-1) ... Selecting previously unselected package libmodule-load-conditional-perl. Preparing to unpack .../libmodule-load-conditional-perl_0.68-1_all.deb ... Unpacking libmodule-load-conditional-perl (0.68-1) ... Preparing to unpack .../libarchive-extract-perl_0.80-1_all.deb ... Unpacking libarchive-extract-perl (0.80-1) over (0.72-1) ... Preparing to unpack .../libarchive13_3.2.2-2+deb9u2_amd64.deb ... Unpacking libarchive13:amd64 (3.2.2-2+deb9u2) over (3.1.2-11+deb8u3) ... Selecting previously unselected package libarpack2. Preparing to unpack .../libarpack2_3.4.0-1+b1_amd64.deb ... Unpacking libarpack2 (3.4.0-1+b1) ... Selecting previously unselected package libsuperlu5:amd64. Preparing to unpack .../libsuperlu5_5.2.1+dfsg1-2_amd64.deb ... Unpacking libsuperlu5:amd64 (5.2.1+dfsg1-2) ... Selecting previously unselected package libarmadillo7. Preparing to unpack .../libarmadillo7_1%3a7.600.2+dfsg-2_amd64.deb ... Unpacking libarmadillo7 (1:7.600.2+dfsg-2) ... Selecting previously unselected package libarray-utils-perl. Preparing to unpack .../libarray-utils-perl_0.5-1_all.deb ... Unpacking libarray-utils-perl (0.5-1) ... Selecting previously unselected package libasm-java. Preparing to unpack .../libasm-java_5.2-2_all.deb ... Unpacking libasm-java (5.2-2) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../libvariable-magic-perl_0.61-1_amd64.deb ... Unpacking libvariable-magic-perl (0.61-1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../libb-hooks-endofscope-perl_0.21-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.21-1) ... Selecting previously unselected package libzstd1. Preparing to unpack .../libzstd1_1.1.2-1_amd64.deb ... Unpacking libzstd1 (1.1.2-1) ... Selecting previously unselected package libblosc1. Preparing to unpack .../libblosc1_1.11.1+ds2-1_amd64.deb ... Unpacking libblosc1 (1.11.1+ds2-1) ... Selecting previously unselected package libboost-atomic1.62.0:amd64. Preparing to unpack .../libboost-atomic1.62.0_1.62.0+dfsg-4_amd64.deb ... Unpacking libboost-atomic1.62.0:amd64 (1.62.0+dfsg-4) ... Selecting previously unselected package libbpp-core2v5:amd64. Preparing to unpack .../libbpp-core2v5_2.2.0-3_amd64.deb ... Unpacking libbpp-core2v5:amd64 (2.2.0-3) ... Selecting previously unselected package libbpp-seq9v5:amd64. Preparing to unpack .../libbpp-seq9v5_2.2.0-1+b1_amd64.deb ... Unpacking libbpp-seq9v5:amd64 (2.2.0-1+b1) ... Selecting previously unselected package libbpp-phyl9v5:amd64. Preparing to unpack .../libbpp-phyl9v5_2.2.0-1+b1_amd64.deb ... Unpacking libbpp-phyl9v5:amd64 (2.2.0-1+b1) ... Selecting previously unselected package libbpp-seq-omics1v5:amd64. Preparing to unpack .../libbpp-seq-omics1v5_2.2.0-1_amd64.deb ... Unpacking libbpp-seq-omics1v5:amd64 (2.2.0-1) ... Selecting previously unselected package libbpp-phyl-omics1v5. Preparing to unpack .../libbpp-phyl-omics1v5_2.2.0-2_amd64.deb ... Unpacking libbpp-phyl-omics1v5 (2.2.0-2) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../libcapture-tiny-perl_0.44-1_all.deb ... Unpacking libcapture-tiny-perl (0.44-1) ... Selecting previously unselected package libcfitsio5:amd64. Preparing to unpack .../libcfitsio5_3.410-1_amd64.deb ... Unpacking libcfitsio5:amd64 (3.410-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../libclass-data-inheritable-perl_0.08-2_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-2) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../libpackage-stash-perl_0.37-1_all.deb ... Unpacking libpackage-stash-perl (0.37-1) ... Selecting previously unselected package libclass-load-perl. Preparing to unpack .../libclass-load-perl_0.23-1_all.deb ... Unpacking libclass-load-perl (0.23-1) ... Selecting previously unselected package libclass-load-xs-perl. Preparing to unpack .../libclass-load-xs-perl_0.09-2+b1_amd64.deb ... Unpacking libclass-load-xs-perl (0.09-2+b1) ... Selecting previously unselected package libclass-tiny-perl. Preparing to unpack .../libclass-tiny-perl_1.006-1_all.deb ... Unpacking libclass-tiny-perl (1.006-1) ... Preparing to unpack .../libcloog-isl4_0.18.4-1+b1_amd64.deb ... Unpacking libcloog-isl4:amd64 (0.18.4-1+b1) over (0.18.2-1+b2) ... Preparing to unpack .../libcofoja-java_1.3-1_all.deb ... Unpacking libcofoja-java (1.3-1) over (1.1-r150-2) ... Selecting previously unselected package libcommons-collections4-java. Preparing to unpack .../libcommons-collections4-java_4.1-1_all.deb ... Unpacking libcommons-collections4-java (4.1-1) ... Selecting previously unselected package libcommons-configuration-java. Preparing to unpack .../libcommons-configuration-java_1.10-4_all.deb ... Unpacking libcommons-configuration-java (1.10-4) ... Selecting previously unselected package libcpan-changes-perl. Preparing to unpack .../libcpan-changes-perl_0.400002-1_all.deb ... Unpacking libcpan-changes-perl (0.400002-1) ... Selecting previously unselected package libcrypto++6. Preparing to unpack .../libcrypto++6_5.6.4-7_amd64.deb ... Unpacking libcrypto++6 (5.6.4-7) ... Preparing to unpack .../libcupsfilters1_1.11.6-3+deb9u1_amd64.deb ... Unpacking libcupsfilters1:amd64 (1.11.6-3+deb9u1) over (1.0.61-5+deb8u3) ... Selecting previously unselected package libdata-perl-perl. Preparing to unpack .../libdata-perl-perl_0.002009-1_all.deb ... Unpacking libdata-perl-perl (0.002009-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../libsub-identify-perl_0.12-2+b1_amd64.deb ... Unpacking libsub-identify-perl (0.12-2+b1) ... Selecting previously unselected package libdevel-overloadinfo-perl. Preparing to unpack .../libdevel-overloadinfo-perl_0.004-1_all.deb ... Unpacking libdevel-overloadinfo-perl (0.004-1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../libnamespace-clean-perl_0.27-1_all.deb ... Unpacking libnamespace-clean-perl (0.27-1) ... Selecting previously unselected package libdevel-partialdump-perl. Preparing to unpack .../libdevel-partialdump-perl_0.18-2_all.deb ... Unpacking libdevel-partialdump-perl (0.18-2) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../libdevel-stacktrace-perl_2.0200-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0200-1) ... Selecting previously unselected package libdist-checkconflicts-perl. Preparing to unpack .../libdist-checkconflicts-perl_0.11-1_all.deb ... Unpacking libdist-checkconflicts-perl (0.11-1) ... Preparing to unpack .../libdjvulibre21_3.5.27.1-7_amd64.deb ... Unpacking libdjvulibre21:amd64 (3.5.27.1-7) over (3.5.25.4-4+b1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../libdrm-amdgpu1_2.4.74-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.74-1) ... Selecting previously unselected package libemail-date-format-perl. Preparing to unpack .../libemail-date-format-perl_1.005-1_all.deb ... Unpacking libemail-date-format-perl (1.005-1) ... Selecting previously unselected package libenv-path-perl. Preparing to unpack .../libenv-path-perl_0.19-1_all.deb ... Unpacking libenv-path-perl (0.19-1) ... Selecting previously unselected package liberfa1:amd64. Preparing to unpack .../liberfa1_1.3.0-2_amd64.deb ... Unpacking liberfa1:amd64 (1.3.0-2) ... Selecting previously unselected package libeval-closure-perl. Preparing to unpack .../libeval-closure-perl_0.14-1_all.deb ... Unpacking libeval-closure-perl (0.14-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../libexception-class-perl_1.42-1_all.deb ... Unpacking libexception-class-perl (1.42-1) ... Selecting previously unselected package libfastutil-java. Preparing to unpack .../libfastutil-java_7.0.13-1_all.deb ... Unpacking libfastutil-java (7.0.13-1) ... Selecting previously unselected package libfile-copy-link-perl. Preparing to unpack .../libfile-copy-link-perl_0.140-2_all.deb ... Unpacking libfile-copy-link-perl (0.140-2) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../libnumber-compare-perl_0.03-1_all.deb ... Unpacking libnumber-compare-perl (0.03-1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.10-1_all.deb ... Unpacking libtext-glob-perl (0.10-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package libfile-grep-perl. Preparing to unpack .../libfile-grep-perl_0.02-1_all.deb ... Unpacking libfile-grep-perl (0.02-1) ... Selecting previously unselected package libfile-slurp-perl. Preparing to unpack .../libfile-slurp-perl_9999.19-6_all.deb ... Unpacking libfile-slurp-perl (9999.19-6) ... Selecting previously unselected package libfile-slurper-perl. Preparing to unpack .../libfile-slurper-perl_0.009-1_all.deb ... Unpacking libfile-slurper-perl (0.009-1) ... Selecting previously unselected package libfindbin-libs-perl. Preparing to unpack .../libfindbin-libs-perl_2.150-1_all.deb ... Unpacking libfindbin-libs-perl (2.150-1) ... Preparing to unpack .../libfltk-images1.3_1.3.4-4_amd64.deb ... Unpacking libfltk-images1.3:amd64 (1.3.4-4) over (1.3.2-6+b1) ... Preparing to unpack .../libfltk1.3_1.3.4-4_amd64.deb ... Unpacking libfltk1.3:amd64 (1.3.4-4) over (1.3.2-6+b1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../libfribidi0_0.19.7-1+deb9u1_amd64.deb ... Unpacking libfribidi0:amd64 (0.19.7-1+deb9u1) ... Preparing to unpack .../libftgl2_2.1.3~rc5-4+nmu1.1_amd64.deb ... Unpacking libftgl2:amd64 (2.1.3~rc5-4+nmu1.1) over (2.1.3~rc5-4+nmu1) ... Selecting previously unselected package libfuse2:amd64. Preparing to unpack .../libfuse2_2.9.7-1+deb9u2_amd64.deb ... Unpacking libfuse2:amd64 (2.9.7-1+deb9u2) ... Selecting previously unselected package libgail18:amd64. Preparing to unpack .../libgail18_2.24.31-2_amd64.deb ... Unpacking libgail18:amd64 (2.24.31-2) ... Selecting previously unselected package libgail-common:amd64. Preparing to unpack .../libgail-common_2.24.31-2_amd64.deb ... Unpacking libgail-common:amd64 (2.24.31-2) ... Selecting previously unselected package libgenome-1.3-0v5:amd64. Preparing to unpack .../libgenome-1.3-0v5_1.3.1-9_amd64.deb ... Unpacking libgenome-1.3-0v5:amd64 (1.3.1-9) ... Selecting previously unselected package libgetopt-java. Preparing to unpack .../libgetopt-java_1.0.14+dfsg-3_all.deb ... Unpacking libgetopt-java (1.0.14+dfsg-3) ... Selecting previously unselected package libgetopt-long-descriptive-perl. Preparing to unpack .../libgetopt-long-descriptive-perl_0.100-1_all.deb ... Unpacking libgetopt-long-descriptive-perl (0.100-1) ... Selecting previously unselected package libllvm3.9:amd64. Preparing to unpack .../libllvm3.9_1%3a3.9.1-9_amd64.deb ... Unpacking libllvm3.9:amd64 (1:3.9.1-9) ... Preparing to unpack .../libgl1-mesa-dri_13.0.6-1+b2_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (13.0.6-1+b2) over (10.3.2-1+deb8u1) ... Preparing to unpack .../libglpk-java_1.7.0-1_amd64.deb ... Unpacking libglpk-java (1.7.0-1) over (1.0.37-1) ... Selecting previously unselected package libparse-yapp-perl. Preparing to unpack .../libparse-yapp-perl_1.05-12_all.deb ... Unpacking libparse-yapp-perl (1.05-12) ... Selecting previously unselected package libgraph-readwrite-perl. Preparing to unpack .../libgraph-readwrite-perl_2.09-1_all.deb ... Unpacking libgraph-readwrite-perl (2.09-1) ... Selecting previously unselected package libntlm0:amd64. Preparing to unpack .../libntlm0_1.4-8_amd64.deb ... Unpacking libntlm0:amd64 (1.4-8) ... Selecting previously unselected package libgsasl7. Preparing to unpack .../libgsasl7_1.8.0-8+b2_amd64.deb ... Unpacking libgsasl7 (1.8.0-8+b2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../libgsl-dev_2.3+dfsg-1_amd64.deb ... Unpacking libgsl-dev (2.3+dfsg-1) ... Selecting previously unselected package libgts-bin. Preparing to unpack .../libgts-bin_0.7.6+darcs121130-4_amd64.deb ... Unpacking libgts-bin (0.7.6+darcs121130-4) ... Selecting previously unselected package libicu-dev. Preparing to unpack .../libicu-dev_57.1-6+deb9u4_amd64.deb ... Unpacking libicu-dev (57.1-6+deb9u4) ... Selecting previously unselected package libilmbase12:amd64. Preparing to unpack .../libilmbase12_2.2.0-12_amd64.deb ... Unpacking libilmbase12:amd64 (2.2.0-12) ... Selecting previously unselected package libipc-shareable-perl. Preparing to unpack .../libipc-shareable-perl_0.61-1_all.deb ... Unpacking libipc-shareable-perl (0.61-1) ... Selecting previously unselected package libjline-java. Preparing to unpack .../libjline-java_1.0-2_all.deb ... Unpacking libjline-java (1.0-2) ... Selecting previously unselected package libjs-bootstrap. Preparing to unpack .../libjs-bootstrap_3.3.7+dfsg-2+deb9u2_all.deb ... Unpacking libjs-bootstrap (3.3.7+dfsg-2+deb9u2) ... Selecting previously unselected package libjs-d3. Preparing to unpack .../libjs-d3_3.5.17-2_all.deb ... Unpacking libjs-d3 (3.5.17-2) ... Selecting previously unselected package libjs-es5-shim. Preparing to unpack .../libjs-es5-shim_4.5.9-1_all.deb ... Unpacking libjs-es5-shim (4.5.9-1) ... Selecting previously unselected package libjs-json. Preparing to unpack .../libjs-json_0~20160510-1_all.deb ... Unpacking libjs-json (0~20160510-1) ... Selecting previously unselected package libvecmath-java. Preparing to unpack .../libvecmath-java_1.5.2-5_all.deb ... Unpacking libvecmath-java (1.5.2-5) ... Selecting previously unselected package libjung-free-java. Preparing to unpack .../libjung-free-java_2.0.1+dfsg-1_all.deb ... Unpacking libjung-free-java (2.0.1+dfsg-1) ... Selecting previously unselected package libjxr0:amd64. Preparing to unpack .../libjxr0_1.1-6+b1_amd64.deb ... Unpacking libjxr0:amd64 (1.1-6+b1) ... Selecting previously unselected package libjxr-tools. Preparing to unpack .../libjxr-tools_1.1-6+b1_amd64.deb ... Unpacking libjxr-tools (1.1-6+b1) ... Selecting previously unselected package libmbedcrypto0:amd64. Preparing to unpack .../libmbedcrypto0_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedx509-0:amd64. Preparing to unpack .../libmbedx509-0_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedtls10:amd64. Preparing to unpack .../libmbedtls10_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedtls-dev:amd64. Preparing to unpack .../libmbedtls-dev_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedtls-dev:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libkdf5-2. Preparing to unpack .../libkdf5-2_2.8.1+dfsg-2_amd64.deb ... Unpacking libkdf5-2 (2.8.1+dfsg-2) ... Selecting previously unselected package libkyotocabinet16v5:amd64. Preparing to unpack .../libkyotocabinet16v5_1.2.76-4.2+b1_amd64.deb ... Unpacking libkyotocabinet16v5:amd64 (1.2.76-4.2+b1) ... Selecting previously unselected package liblog-dispatch-perl. Preparing to unpack .../liblog-dispatch-perl_2.58-1_all.deb ... Unpacking liblog-dispatch-perl (2.58-1) ... Selecting previously unselected package liblog-log4perl-perl. Preparing to unpack .../liblog-log4perl-perl_1.48-1+deb9u1_all.deb ... Unpacking liblog-log4perl-perl (1.48-1+deb9u1) ... Selecting previously unselected package libltdl-dev:amd64. Preparing to unpack .../libltdl-dev_2.4.6-2_amd64.deb ... Unpacking libltdl-dev:amd64 (2.4.6-2) ... Selecting previously unselected package libopenexr22:amd64. Preparing to unpack .../libopenexr22_2.2.0-11+b1_amd64.deb ... Unpacking libopenexr22:amd64 (2.2.0-11+b1) ... Preparing to unpack .../libwmf0.2-7_0.2.8.4-10.6_amd64.deb ... Unpacking libwmf0.2-7:amd64 (0.2.8.4-10.6) over (0.2.8.4-10.3+deb8u2) ... Selecting previously unselected package libmagickcore-6.q16-3-extra:amd64. Preparing to unpack .../libmagickcore-6.q16-3-extra_8%3a6.9.7.4+dfsg-11+deb9u8_amd64.deb ... Unpacking libmagickcore-6.q16-3-extra:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Selecting previously unselected package mailutils-common. Preparing to unpack .../mailutils-common_1%3a3.1.1-1_all.deb ... Unpacking mailutils-common (1:3.1.1-1) ... Selecting previously unselected package libmailutils5:amd64. Preparing to unpack .../libmailutils5_1%3a3.1.1-1_amd64.deb ... Unpacking libmailutils5:amd64 (1:3.1.1-1) ... Selecting previously unselected package libmath-random-isaac-xs-perl. Preparing to unpack .../libmath-random-isaac-xs-perl_1.004-2+b2_amd64.deb ... Unpacking libmath-random-isaac-xs-perl (1.004-2+b2) ... Selecting previously unselected package libmuscle-3.7-1. Preparing to unpack .../libmuscle-3.7-1_3.7+4565-2_amd64.deb ... Unpacking libmuscle-3.7-1 (3.7+4565-2) ... Selecting previously unselected package libmems-1.6-1v5:amd64. Preparing to unpack .../libmems-1.6-1v5_1.6.0+4725-4_amd64.deb ... Unpacking libmems-1.6-1v5:amd64 (1.6.0+4725-4) ... Selecting previously unselected package libmime-lite-perl. Preparing to unpack .../libmime-lite-perl_3.030-2_all.deb ... Unpacking libmime-lite-perl (3.030-2) ... Selecting previously unselected package libmime-types-perl. Preparing to unpack .../libmime-types-perl_2.13-1_all.deb ... Unpacking libmime-types-perl (2.13-1) ... Selecting previously unselected package libmodule-runtime-conflicts-perl. Preparing to unpack .../libmodule-runtime-conflicts-perl_0.003-1_all.deb ... Unpacking libmodule-runtime-conflicts-perl (0.003-1) ... Selecting previously unselected package libpackage-deprecationmanager-perl. Preparing to unpack .../libpackage-deprecationmanager-perl_0.17-1_all.deb ... Unpacking libpackage-deprecationmanager-perl (0.17-1) ... Selecting previously unselected package libpackage-stash-xs-perl. Preparing to unpack .../libpackage-stash-xs-perl_0.28-3+b1_amd64.deb ... Unpacking libpackage-stash-xs-perl (0.28-3+b1) ... Selecting previously unselected package libmoose-perl. Preparing to unpack .../libmoose-perl_2.1807-1_amd64.deb ... Unpacking libmoose-perl (2.1807-1) ... Selecting previously unselected package libmoox-handlesvia-perl. Preparing to unpack .../libmoox-handlesvia-perl_0.001008-2_all.deb ... Unpacking libmoox-handlesvia-perl (0.001008-2) ... Selecting previously unselected package libnamespace-autoclean-perl. Preparing to unpack .../libnamespace-autoclean-perl_0.28-1_all.deb ... Unpacking libnamespace-autoclean-perl (0.28-1) ... Selecting previously unselected package libnanoxml2-java. Preparing to unpack .../libnanoxml2-java_2.2.3.dfsg-5_all.deb ... Unpacking libnanoxml2-java (2.2.3.dfsg-5) ... Selecting previously unselected package libncbi-vdb2. Preparing to unpack .../libncbi-vdb2_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb2 (2.8.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb2. Preparing to unpack .../libncbi-wvdb2_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb2 (2.8.1+dfsg-2) ... Preparing to unpack .../netpbm_2%3a10.0-15.3+b2_amd64.deb ... Unpacking netpbm (2:10.0-15.3+b2) over (2:10.0-15.2) ... Preparing to unpack .../libnetpbm10_2%3a10.0-15.3+b2_amd64.deb ... Unpacking libnetpbm10 (2:10.0-15.3+b2) over (2:10.0-15.2) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../libpath-tiny-perl_0.100-1_all.deb ... Unpacking libpath-tiny-perl (0.100-1) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../libperlio-utf8-strict-perl_0.006-1+b2_amd64.deb ... Unpacking libperlio-utf8-strict-perl (0.006-1+b2) ... Selecting previously unselected package libpod-markdown-perl. Preparing to unpack .../libpod-markdown-perl_3.005000-1_all.deb ... Unpacking libpod-markdown-perl (3.005000-1) ... Preparing to unpack .../libpod-readme-perl_1.1.2-1_all.deb ... Unpacking libpod-readme-perl (1.1.2-1) over (0.11-1) ... Preparing to unpack .../libpoppler-qt4-4_0.48.0-2+deb9u2_amd64.deb ... Unpacking libpoppler-qt4-4:amd64 (0.48.0-2+deb9u2) over (0.26.5-2+deb8u4) ... Selecting previously unselected package libprocessing-core-java. Preparing to unpack .../libprocessing-core-java_1.2.1-1_all.deb ... Unpacking libprocessing-core-java (1.2.1-1) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_63-g13a3d08-1_amd64.deb ... Unpacking qtchooser (63-g13a3d08-1) ... Selecting previously unselected package qdbus. Preparing to unpack .../qdbus_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking qdbus (4:4.8.7+dfsg-11) ... Selecting previously unselected package libqt4-dbus:amd64. Preparing to unpack .../libqt4-dbus_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-dbus:amd64 (4:4.8.7+dfsg-11) ... Selecting previously unselected package libqt4-script:amd64. Preparing to unpack .../libqt4-script_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-script:amd64 (4:4.8.7+dfsg-11) ... Selecting previously unselected package libqt4-declarative:amd64. Preparing to unpack .../libqt4-declarative_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-declarative:amd64 (4:4.8.7+dfsg-11) ... Selecting previously unselected package libqt4-designer:amd64. Preparing to unpack .../libqt4-designer_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-designer:amd64 (4:4.8.7+dfsg-11) ... Selecting previously unselected package libqt4-help:amd64. Preparing to unpack .../libqt4-help_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-help:amd64 (4:4.8.7+dfsg-11) ... Selecting previously unselected package libqt4-scripttools:amd64. Preparing to unpack .../libqt4-scripttools_4%3a4.8.7+dfsg-11_amd64.deb ... Unpacking libqt4-scripttools:amd64 (4:4.8.7+dfsg-11) ... Selecting previously unselected package libqt5xml5:amd64. Preparing to unpack .../libqt5xml5_5.7.1+dfsg-3+deb9u2_amd64.deb ... Unpacking libqt5xml5:amd64 (5.7.1+dfsg-3+deb9u2) ... Selecting previously unselected package libqtassistantclient4:amd64. Preparing to unpack .../libqtassistantclient4_4.6.3-7+b1_amd64.deb ... Unpacking libqtassistantclient4:amd64 (4.6.3-7+b1) ... Selecting previously unselected package librdp-taxonomy-tree-java. Preparing to unpack .../librdp-taxonomy-tree-java_1.2.0-1_all.deb ... Unpacking librdp-taxonomy-tree-java (1.2.0-1) ... Selecting previously unselected package librhino-java. Preparing to unpack .../librhino-java_1.7.7.1-1_all.deb ... Unpacking librhino-java (1.7.7.1-1) ... Preparing to unpack .../libsasl2-modules_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) over (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libsaxon-java. Preparing to unpack .../libsaxon-java_1%3a6.5.5-10_all.deb ... Unpacking libsaxon-java (1:6.5.5-10) ... Selecting previously unselected package libsmithwaterman0. Preparing to unpack .../libsmithwaterman0_0.0+20160702-1+b1_amd64.deb ... Unpacking libsmithwaterman0 (0.0+20160702-1+b1) ... Selecting previously unselected package libssw-java. Preparing to unpack .../libssw-java_1.1-1+b1_amd64.deb ... Unpacking libssw-java (1.1-1+b1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../libsub-uplevel-perl_0.2600-1_all.deb ... Unpacking libsub-uplevel-perl (0.2600-1) ... Selecting previously unselected package libtabixpp0:amd64. Preparing to unpack .../libtabixpp0_1.0.0-2_amd64.deb ... Unpacking libtabixpp0:amd64 (1.0.0-2) ... Preparing to unpack .../libtcmalloc-minimal4_2.5-2.2_amd64.deb ... Unpacking libtcmalloc-minimal4 (2.5-2.2) over (2.2.1-0.2) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../libtest-deep-perl_1.126-1_all.deb ... Unpacking libtest-deep-perl (1.126-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../libtext-diff-perl_1.44-1_all.deb ... Unpacking libtext-diff-perl (1.44-1) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../libtest-differences-perl_0.64-1_all.deb ... Unpacking libtest-differences-perl (0.64-1) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../libtest-exception-perl_0.43-1_all.deb ... Unpacking libtest-exception-perl (0.43-1) ... Selecting previously unselected package libtest-file-perl. Preparing to unpack .../libtest-file-perl_1.442-1_all.deb ... Unpacking libtest-file-perl (1.442-1) ... Selecting previously unselected package libtest-files-perl. Preparing to unpack .../libtest-files-perl_0.14-1_all.deb ... Unpacking libtest-files-perl (0.14-1) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../libtest-warn-perl_0.32-1_all.deb ... Unpacking libtest-warn-perl (0.32-1) ... Selecting previously unselected package libtest-simple-perl. Preparing to unpack .../libtest-simple-perl_1.302075-1_all.deb ... Unpacking libtest-simple-perl (1.302075-1) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../libtest-most-perl_0.35-1_all.deb ... Unpacking libtest-most-perl (0.35-1) ... Selecting previously unselected package libtest-output-perl. Preparing to unpack .../libtest-output-perl_1.03-1_all.deb ... Unpacking libtest-output-perl (1.03-1) ... Selecting previously unselected package libtext-csv-perl. Preparing to unpack .../libtext-csv-perl_1.33-2_all.deb ... Unpacking libtext-csv-perl (1.33-2) ... Selecting previously unselected package libtext-csv-xs-perl. Preparing to unpack .../libtext-csv-xs-perl_1.26-1_amd64.deb ... Unpacking libtext-csv-xs-perl (1.26-1) ... Selecting previously unselected package libunicode-utf8-perl. Preparing to unpack .../libunicode-utf8-perl_0.60-1+b3_amd64.deb ... Unpacking libunicode-utf8-perl (0.60-1+b3) ... Selecting previously unselected package libvcflib1. Preparing to unpack .../libvcflib1_1.0.0~rc1+dfsg1-3_amd64.deb ... Unpacking libvcflib1 (1.0.0~rc1+dfsg1-3) ... Selecting previously unselected package libvcflib-tools. Preparing to unpack .../libvcflib-tools_1.0.0~rc1+dfsg1-3_amd64.deb ... Unpacking libvcflib-tools (1.0.0~rc1+dfsg1-3) ... Preparing to unpack .../libvisual-0.4-plugins_1%3a0.4.0+dfsg1-10_amd64.deb ... Unpacking libvisual-0.4-plugins:amd64 (1:0.4.0+dfsg1-10) over (0.4.0.dfsg.1-7) ... Selecting previously unselected package libwacom-bin. Preparing to unpack .../libwacom-bin_0.22-1+b1_amd64.deb ... Unpacking libwacom-bin (0.22-1+b1) ... Selecting previously unselected package libwcs5:amd64. Preparing to unpack .../libwcs5_5.16-1_amd64.deb ... Unpacking libwcs5:amd64 (5.16-1) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../libwebpdemux2_0.5.2-1_amd64.deb ... Unpacking libwebpdemux2:amd64 (0.5.2-1) ... Selecting previously unselected package libwebpmux2:amd64. Preparing to unpack .../libwebpmux2_0.5.2-1_amd64.deb ... Unpacking libwebpmux2:amd64 (0.5.2-1) ... Selecting previously unselected package libxfont1:amd64. Preparing to unpack .../libxfont1_1%3a1.5.2-4_amd64.deb ... Unpacking libxfont1:amd64 (1:1.5.2-4) ... Selecting previously unselected package libxtables12:amd64. Preparing to unpack .../libxtables12_1.6.0+snapshot20161117-6_amd64.deb ... Unpacking libxtables12:amd64 (1.6.0+snapshot20161117-6) ... Selecting previously unselected package libzeus-jscl-java. Preparing to unpack .../libzeus-jscl-java_1.72-1_all.deb ... Unpacking libzeus-jscl-java (1.72-1) ... Preparing to unpack .../logol-bin_1.7.5-1_amd64.deb ... Unpacking logol-bin (1.7.5-1) over (1.7.0-2) ... Preparing to unpack .../swi-prolog-nox_7.2.3+dfsg-6_amd64.deb ... Unpacking swi-prolog-nox (7.2.3+dfsg-6) over (6.6.6-5) ... Preparing to unpack .../swi-prolog_7.2.3+dfsg-6_amd64.deb ... Unpacking swi-prolog (7.2.3+dfsg-6) over (6.6.6-5) ... Preparing to unpack .../swi-prolog-x_7.2.3+dfsg-6_amd64.deb ... Unpacking swi-prolog-x (7.2.3+dfsg-6) over (6.6.6-5) ... Preparing to unpack .../lynx-cur_2.8.9dev11-1_all.deb ... Removing obsolete conffile /etc/lynx-cur/lynx.cfg ... Removing obsolete conffile /etc/lynx-cur/lynx.lss ... Unpacking lynx-cur (2.8.9dev11-1) over (2.8.9dev1-2+deb8u1) ... Preparing to unpack .../lynx_2.8.9dev11-1_amd64.deb ... Unpacking lynx (2.8.9dev11-1) over (2.8.9dev1-2+deb8u1) ... Selecting previously unselected package lynx-common. Preparing to unpack .../lynx-common_2.8.9dev11-1_all.deb ... Unpacking lynx-common (2.8.9dev11-1) ... Selecting previously unselected package macsyfinder. Preparing to unpack .../macsyfinder_1.0.2-3_all.deb ... Unpacking macsyfinder (1.0.2-3) ... Selecting previously unselected package maffilter. Preparing to unpack .../maffilter_1.1.0-1+dfsg-2+b2_amd64.deb ... Unpacking maffilter (1.1.0-1+dfsg-2+b2) ... Selecting previously unselected package mailutils. Preparing to unpack .../mailutils_1%3a3.1.1-1_amd64.deb ... Unpacking mailutils (1:3.1.1-1) ... Preparing to unpack .../r-cran-codetools_0.2-15-1_all.deb ... Unpacking r-cran-codetools (0.2-15-1) over (0.2-9-1) ... Preparing to unpack .../r-cran-iterators_1.0.8-1_all.deb ... Unpacking r-cran-iterators (1.0.8-1) over (1.0.7-1) ... Preparing to unpack .../r-cran-foreach_1.4.3-1_all.deb ... Unpacking r-cran-foreach (1.4.3-1) over (1.4.2-1) ... Selecting previously unselected package r-cran-gam. Preparing to unpack .../r-cran-gam_1.14-1_amd64.deb ... Unpacking r-cran-gam (1.14-1) ... Selecting previously unselected package r-cran-inline. Preparing to unpack .../r-cran-inline_0.3.14-1_all.deb ... Unpacking r-cran-inline (0.3.14-1) ... Selecting previously unselected package r-cran-rcppgsl. Preparing to unpack .../r-cran-rcppgsl_0.3.2-2_amd64.deb ... Unpacking r-cran-rcppgsl (0.3.2-2) ... Selecting previously unselected package mapdamage. Preparing to unpack .../mapdamage_2.0.6+dfsg-2_all.deb ... Unpacking mapdamage (2.0.6+dfsg-2) ... Preparing to unpack .../mapsembler2_2.2.3+dfsg-3+b1_amd64.deb ... Unpacking mapsembler2 (2.2.3+dfsg-3+b1) over (2.1.6+dfsg-1) ... Preparing to unpack .../archives/maq_0.7.1-7_amd64.deb ... Unpacking maq (0.7.1-7) over (0.7.1-5) ... Preparing to unpack .../maqview_0.2.5-7+b1_amd64.deb ... Unpacking maqview (0.2.5-7+b1) over (0.2.5-6) ... Preparing to unpack .../massxpert_3.6.1-1_amd64.deb ... Unpacking massxpert (3.6.1-1) over (3.4.1-1) ... Preparing to unpack .../massxpert-data_3.6.1-1_all.deb ... Unpacking massxpert-data (3.6.1-1) over (3.4.1-1) ... Selecting previously unselected package progressivemauve. Preparing to unpack .../progressivemauve_1.2.0+4713-2+b2_amd64.deb ... Unpacking progressivemauve (1.2.0+4713-2+b2) ... Selecting previously unselected package mauve-aligner. Preparing to unpack .../mauve-aligner_2.4.0+4734-3_amd64.deb ... Unpacking mauve-aligner (2.4.0+4734-3) ... Selecting previously unselected package mcl. Preparing to unpack .../mcl_1%3a14-137-1+b1_amd64.deb ... Unpacking mcl (1:14-137-1+b1) ... Preparing to unpack .../menu_2.1.47+b1_amd64.deb ... Unpacking menu (2.1.47+b1) over (2.1.47) ... Selecting previously unselected package mesa-utils. Preparing to unpack .../mesa-utils_8.3.0-3_amd64.deb ... Unpacking mesa-utils (8.3.0-3) ... Selecting previously unselected package metaphlan2-data. Preparing to unpack .../metaphlan2-data_2.6.0+ds-2_all.deb ... Unpacking metaphlan2-data (2.6.0+ds-2) ... Preparing to unpack .../pyqi_0.3.2+dfsg-2_all.deb ... Unpacking pyqi (0.3.2+dfsg-2) over (0.3.2+dfsg-1) ... Selecting previously unselected package python-colorama. Preparing to unpack .../python-colorama_0.3.7-1_all.deb ... Unpacking python-colorama (0.3.7-1) ... Selecting previously unselected package python-click. Preparing to unpack .../python-click_6.6-1_all.deb ... Unpacking python-click (6.6-1) ... Selecting previously unselected package python-configparser. Preparing to unpack .../python-configparser_3.3.0r2-2_all.deb ... Unpacking python-configparser (3.3.0r2-2) ... Selecting previously unselected package python-future. Preparing to unpack .../python-future_0.15.2-4_all.deb ... Unpacking python-future (0.15.2-4) ... Preparing to unpack .../python-biom-format_2.1.5+dfsg-7_amd64.deb ... Unpacking python-biom-format (2.1.5+dfsg-7) over (2.1+dfsg-1) ... Selecting previously unselected package python-msgpack. Preparing to unpack .../python-msgpack_0.4.8-1_amd64.deb ... Unpacking python-msgpack (0.4.8-1) ... Selecting previously unselected package python-pandas-lib. Preparing to unpack .../python-pandas-lib_0.19.2-5.1_amd64.deb ... Unpacking python-pandas-lib (0.19.2-5.1) ... Selecting previously unselected package python-pandas. Preparing to unpack .../python-pandas_0.19.2-5.1_all.deb ... Unpacking python-pandas (0.19.2-5.1) ... Selecting previously unselected package metaphlan2. Preparing to unpack .../metaphlan2_2.6.0+ds-2_all.deb ... Unpacking metaphlan2 (2.6.0+ds-2) ... Selecting previously unselected package mhap. Preparing to unpack .../mhap_2.1.1+dfsg-1_all.deb ... Unpacking mhap (2.1.1+dfsg-1) ... Selecting previously unselected package python-matplotlib-venn. Preparing to unpack .../python-matplotlib-venn_0.11.5-1_all.deb ... Unpacking python-matplotlib-venn (0.11.5-1) ... Preparing to unpack .../python-sip_4.18.1+dfsg-2_amd64.deb ... Unpacking python-sip (4.18.1+dfsg-2) over (4.16.4+dfsg-1) ... Selecting previously unselected package python-qt4. Preparing to unpack .../python-qt4_4.11.4+dfsg-2+b1_amd64.deb ... Unpacking python-qt4 (4.11.4+dfsg-2+b1) ... Selecting previously unselected package microbegps. Preparing to unpack .../microbegps_1.0.0-2_all.deb ... Unpacking microbegps (1.0.0-2) ... Preparing to unpack .../minia_1.6906-1+b2_amd64.deb ... Unpacking minia (1.6906-1+b2) over (1.6088-1) ... Selecting previously unselected package miniasm. Preparing to unpack .../miniasm_0.2+dfsg-2+b1_amd64.deb ... Unpacking miniasm (0.2+dfsg-2+b1) ... Selecting previously unselected package minimap. Preparing to unpack .../minimap_0.2-3+b1_amd64.deb ... Unpacking minimap (0.2-3+b1) ... Preparing to unpack .../mothur_1.38.1.1-1_amd64.deb ... Unpacking mothur (1.38.1.1-1) over (1.33.3+dfsg-2) ... Selecting previously unselected package r-cran-gtools. Preparing to unpack .../r-cran-gtools_3.5.0-1_amd64.deb ... Unpacking r-cran-gtools (3.5.0-1) ... Selecting previously unselected package r-cran-gdata. Preparing to unpack .../r-cran-gdata_2.17.0-1_all.deb ... Unpacking r-cran-gdata (2.17.0-1) ... Selecting previously unselected package r-cran-catools. Preparing to unpack .../r-cran-catools_1.17.1-1+b1_amd64.deb ... Unpacking r-cran-catools (1.17.1-1+b1) ... Preparing to unpack .../r-cran-kernsmooth_2.23-15-2_amd64.deb ... Unpacking r-cran-kernsmooth (2.23-15-2) over (2.23-13-1) ... Selecting previously unselected package r-cran-gplots. Preparing to unpack .../r-cran-gplots_3.0.1-2_all.deb ... Unpacking r-cran-gplots (3.0.1-2) ... Selecting previously unselected package r-cran-rocr. Preparing to unpack .../r-cran-rocr_1.0-7-2_all.deb ... Unpacking r-cran-rocr (1.0-7-2) ... Selecting previously unselected package murasaki-common. Preparing to unpack .../murasaki-common_1.68.6-6_all.deb ... Unpacking murasaki-common (1.68.6-6) ... Selecting previously unselected package murasaki. Preparing to unpack .../murasaki_1.68.6-6+b4_amd64.deb ... Unpacking murasaki (1.68.6-6+b4) ... Preparing to unpack .../mustang_3.2.3-1_amd64.deb ... Unpacking mustang (3.2.3-1) over (3.2.2-1) ... Selecting previously unselected package nanopolish. Preparing to unpack .../nanopolish_0.5.0-1+b1_amd64.deb ... Unpacking nanopolish (0.5.0-1+b1) ... Selecting previously unselected package ncbi-entrez-direct. Preparing to unpack .../ncbi-entrez-direct_6.10.20170123+ds-1_amd64.deb ... Adding 'diversion of /usr/bin/efetch to /usr/bin/efetch.acedb by ncbi-entrez-direct' Adding 'diversion of /usr/share/man/man1/efetch.1.gz to /usr/share/man/man1/efetch.acedb.1.gz by ncbi-entrez-direct' Adding 'diversion of /usr/bin/einfo to /usr/bin/einfo.epub by ncbi-entrez-direct' Adding 'diversion of /usr/share/man/man1/einfo.1.gz to /usr/share/man/man1/einfo.epub.1.gz by ncbi-entrez-direct' Unpacking ncbi-entrez-direct (6.10.20170123+ds-1) ... Preparing to unpack .../ncbi-epcr_2.3.12-1-4_amd64.deb ... Unpacking ncbi-epcr (2.3.12-1-4) over (2.3.12-1-2) ... Selecting previously unselected package ncl-tools. Preparing to unpack .../ncl-tools_2.1.18+dfsg-2+b1_amd64.deb ... Unpacking ncl-tools (2.1.18+dfsg-2+b1) ... Preparing to unpack .../notification-daemon_3.20.0-1+b1_amd64.deb ... Unpacking notification-daemon (3.20.0-1+b1) over (0.7.6-2) ... Preparing to unpack .../openssl_1.1.0l-1~deb9u1_amd64.deb ... Unpacking openssl (1.1.0l-1~deb9u1) over (1.0.1t-1+deb8u8) ... Preparing to unpack .../paraclu_9-1+b2_amd64.deb ... Unpacking paraclu (9-1+b2) over (9-1) ... Selecting previously unselected package parafly. Preparing to unpack .../parafly_0.0.2013.01.21-3+b1_amd64.deb ... Unpacking parafly (0.0.2013.01.21-3+b1) ... Preparing to unpack .../parsinsert_1.04-2_amd64.deb ... Unpacking parsinsert (1.04-2) over (1.04-1) ... Selecting previously unselected package phipack. Preparing to unpack .../phipack_0.0.20160614-2_amd64.deb ... Unpacking phipack (0.0.20160614-2) ... Selecting previously unselected package parsnp. Preparing to unpack .../parsnp_1.2+dfsg-3_amd64.deb ... Unpacking parsnp (1.2+dfsg-3) ... Selecting previously unselected package python-pbalign. Preparing to unpack .../python-pbalign_0.3.0-1_all.deb ... Unpacking python-pbalign (0.3.0-1) ... Selecting previously unselected package pbalign. Preparing to unpack .../pbalign_0.3.0-1_all.deb ... Unpacking pbalign (0.3.0-1) ... Selecting previously unselected package pbbamtools. Preparing to unpack .../pbbamtools_0.7.4+ds-1_amd64.deb ... Unpacking pbbamtools (0.7.4+ds-1) ... Selecting previously unselected package pbbarcode. Preparing to unpack .../pbbarcode_0.8.0-4_amd64.deb ... Unpacking pbbarcode (0.8.0-4) ... Selecting previously unselected package pbdagcon. Preparing to unpack .../pbdagcon_0.3+20161121+ds-1_amd64.deb ... Unpacking pbdagcon (0.3+20161121+ds-1) ... Selecting previously unselected package python-pbconsensuscore. Preparing to unpack .../python-pbconsensuscore_1.0.2-2_amd64.deb ... Unpacking python-pbconsensuscore (1.0.2-2) ... Selecting previously unselected package python-pbgenomicconsensus. Preparing to unpack .../python-pbgenomicconsensus_2.1.0-1_all.deb ... Unpacking python-pbgenomicconsensus (2.1.0-1) ... Selecting previously unselected package pbgenomicconsensus. Preparing to unpack .../pbgenomicconsensus_2.1.0-1_all.deb ... Unpacking pbgenomicconsensus (2.1.0-1) ... Selecting previously unselected package python-pbh5tools. Preparing to unpack .../python-pbh5tools_0.8.0+dfsg-5_amd64.deb ... Unpacking python-pbh5tools (0.8.0+dfsg-5) ... Selecting previously unselected package pbh5tools. Preparing to unpack .../pbh5tools_0.8.0+dfsg-5_all.deb ... Unpacking pbh5tools (0.8.0+dfsg-5) ... Selecting previously unselected package python-pbsuite-utils. Preparing to unpack .../python-pbsuite-utils_15.8.24+dfsg-2_all.deb ... Unpacking python-pbsuite-utils (15.8.24+dfsg-2) ... Selecting previously unselected package pbjelly. Preparing to unpack .../pbjelly_15.8.24+dfsg-2_all.deb ... Unpacking pbjelly (15.8.24+dfsg-2) ... Selecting previously unselected package python-pbbanana. Preparing to unpack .../python-pbbanana_15.8.24+dfsg-2_all.deb ... Unpacking python-pbbanana (15.8.24+dfsg-2) ... Selecting previously unselected package python-sortedcontainers. Preparing to unpack .../python-sortedcontainers_1.5.7-1_all.deb ... Unpacking python-sortedcontainers (1.5.7-1) ... Selecting previously unselected package python-intervaltree. Preparing to unpack .../python-intervaltree_2.1.0-2_all.deb ... Unpacking python-intervaltree (2.1.0-2) ... Selecting previously unselected package python-intervaltree-bio. Preparing to unpack .../python-intervaltree-bio_1.0.1-1_all.deb ... Unpacking python-intervaltree-bio (1.0.1-1) ... Selecting previously unselected package pbhoney. Preparing to unpack .../pbhoney_15.8.24+dfsg-2_all.deb ... Unpacking pbhoney (15.8.24+dfsg-2) ... Selecting previously unselected package pbsim. Preparing to unpack .../pbsim_1.0.3-2_amd64.deb ... Unpacking pbsim (1.0.3-2) ... Selecting previously unselected package pbsuite. Preparing to unpack .../pbsuite_15.8.24+dfsg-2_all.deb ... Unpacking pbsuite (15.8.24+dfsg-2) ... Preparing to unpack .../pdb2pqr_2.1.1+dfsg-2_amd64.deb ... Unpacking pdb2pqr (2.1.1+dfsg-2) over (1.9.0+dfsg-1) ... Preparing to unpack .../perm_0.4.0-2_amd64.deb ... Unpacking perm (0.4.0-2) over (0.4.0-1) ... Selecting previously unselected package phybin. Preparing to unpack .../phybin_0.3-1+b1_amd64.deb ... Unpacking phybin (0.3-1+b1) ... Preparing to unpack .../phyml_3%3a3.2.0+dfsg-7+b1_amd64.deb ... Unpacking phyml (3:3.2.0+dfsg-7+b1) over (2:20120412-2) ... Selecting previously unselected package physamp. Preparing to unpack .../physamp_0.2.0-1+b1_amd64.deb ... Unpacking physamp (0.2.0-1+b1) ... Selecting previously unselected package piler. Preparing to unpack .../piler_0~20140707-1+b1_amd64.deb ... Unpacking piler (0~20140707-1+b1) ... Selecting previously unselected package pirs-profiles. Preparing to unpack .../pirs-profiles_2.0.2+dfsg-5.1_all.deb ... Unpacking pirs-profiles (2.0.2+dfsg-5.1) ... Selecting previously unselected package ttf-liberation. Preparing to unpack .../ttf-liberation_1%3a1.07.4-2_all.deb ... Unpacking ttf-liberation (1:1.07.4-2) ... Selecting previously unselected package pirs. Preparing to unpack .../pirs_2.0.2+dfsg-5.1+b1_amd64.deb ... Unpacking pirs (2.0.2+dfsg-5.1+b1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../pkg-config_0.29-4+b1_amd64.deb ... Unpacking pkg-config (0.29-4+b1) ... Selecting previously unselected package placnet. Preparing to unpack .../placnet_1.03-2_all.deb ... Unpacking placnet (1.03-2) ... Selecting previously unselected package plast. Preparing to unpack .../plast_2.3.1+dfsg-4_amd64.deb ... Unpacking plast (2.3.1+dfsg-4) ... Preparing to unpack .../plink_1.07-7_amd64.deb ... Unpacking plink (1.07-7) over (1.07-3) ... Selecting previously unselected package plink1.9. Preparing to unpack .../plink1.9_1.90~b3.45-170113-1_amd64.deb ... Unpacking plink1.9 (1.90~b3.45-170113-1) ... Selecting previously unselected package python-opengl. Preparing to unpack .../python-opengl_3.1.0+dfsg-1_all.deb ... Unpacking python-opengl (3.1.0+dfsg-1) ... Preparing to unpack .../pymol_1.8.4.0+dfsg-1_amd64.deb ... Unpacking pymol (1.8.4.0+dfsg-1) over (1.7.2.1-1) ... Selecting previously unselected package pymol-data. Preparing to unpack .../pymol-data_1.8.4.0+dfsg-1_all.deb ... Unpacking pymol-data (1.8.4.0+dfsg-1) ... Preparing to unpack .../python-lxml_3.7.1-1_amd64.deb ... Unpacking python-lxml (3.7.1-1) over (3.4.0-1) ... Selecting previously unselected package python-openbabel. Preparing to unpack .../python-openbabel_2.3.2+dfsg-3_amd64.deb ... Unpacking python-openbabel (2.3.2+dfsg-3) ... Selecting previously unselected package plip. Preparing to unpack .../plip_1.3.3+dfsg-1_all.deb ... Unpacking plip (1.3.3+dfsg-1) ... Selecting previously unselected package python-seaborn. Preparing to unpack .../python-seaborn_0.7.1-4_all.deb ... Unpacking python-seaborn (0.7.1-4) ... Selecting previously unselected package poretools. Preparing to unpack .../poretools_0.6.0+dfsg-2_all.deb ... Unpacking poretools (0.6.0+dfsg-2) ... Preparing to unpack .../prank_0.0.150803-2_amd64.deb ... Unpacking prank (0.0.150803-2) over (0.0.140110-1) ... Preparing to unpack .../primer3_2.3.7-3_amd64.deb ... Unpacking primer3 (2.3.7-3) over (2.3.6-1) ... Preparing to unpack .../probabel_0.4.5-3+b1_amd64.deb ... Unpacking probabel (0.4.5-3+b1) over (0.4.3-2) ... Preparing to unpack .../probalign_1.4-5_amd64.deb ... Unpacking probalign (1.4-5) over (1.4-3) ... Preparing to unpack .../probcons_1.12-11_amd64.deb ... Unpacking probcons (1.12-11) over (1.12-9) ... Preparing to unpack .../prosper_1.00.4+cvs.2007.05.01-4.1_all.deb ... Unpacking prosper (1.00.4+cvs.2007.05.01-4.1) over (1.00.4+cvs.2007.05.01-4) ... Selecting previously unselected package proteinortho. Preparing to unpack .../proteinortho_5.15+dfsg-1_amd64.deb ... Unpacking proteinortho (5.15+dfsg-1) ... Selecting previously unselected package prottest. Preparing to unpack .../prottest_3.4.2+dfsg-2_all.deb ... Unpacking prottest (3.4.2+dfsg-2) ... Selecting previously unselected package psmisc. Preparing to unpack .../psmisc_22.21-2.1+b2_amd64.deb ... Unpacking psmisc (22.21-2.1+b2) ... Selecting previously unselected package python-lmfit. Preparing to unpack .../python-lmfit_0.9.5+dfsg-2_all.deb ... Unpacking python-lmfit (0.9.5+dfsg-2) ... Preparing to unpack .../pycorrfit_0.9.9+dfsg-2_amd64.deb ... Unpacking pycorrfit (0.9.9+dfsg-2) over (0.8.3-2) ... Selecting previously unselected package python-configobj. Preparing to unpack .../python-configobj_5.0.6-2_all.deb ... Unpacking python-configobj (5.0.6-2) ... Selecting previously unselected package python-ply. Preparing to unpack .../python-ply_3.9-1_all.deb ... Unpacking python-ply (3.9-1) ... Selecting previously unselected package python-py. Preparing to unpack .../python-py_1.4.32-3_all.deb ... Unpacking python-py (1.4.32-3) ... Selecting previously unselected package python-pytest. Preparing to unpack .../python-pytest_3.0.6-1_all.deb ... Unpacking python-pytest (3.0.6-1) ... Selecting previously unselected package python-astropy. Preparing to unpack .../python-astropy_1.3-8_amd64.deb ... Unpacking python-astropy (1.3-8) ... Preparing to unpack .../pyscanfcs_0.2.3-3_amd64.deb ... Unpacking pyscanfcs (0.2.3-3) over (0.2.2-2) ... Selecting previously unselected package python-antlr. Preparing to unpack .../python-antlr_2.7.7+dfsg-7_all.deb ... Unpacking python-antlr (2.7.7+dfsg-7) ... Selecting previously unselected package python-bs4. Preparing to unpack .../python-bs4_4.5.3-1_all.deb ... Unpacking python-bs4 (4.5.3-1) ... Selecting previously unselected package python-cffi-backend. Preparing to unpack .../python-cffi-backend_1.9.1-2_amd64.deb ... Unpacking python-cffi-backend (1.9.1-2) ... Selecting previously unselected package python-idna. Preparing to unpack .../python-idna_2.2-1_all.deb ... Unpacking python-idna (2.2-1) ... Selecting previously unselected package python-ipaddress. Preparing to unpack .../python-ipaddress_1.0.17-1_all.deb ... Unpacking python-ipaddress (1.0.17-1) ... Selecting previously unselected package python-pyasn1. Preparing to unpack .../python-pyasn1_0.1.9-2_all.deb ... Unpacking python-pyasn1 (0.1.9-2) ... Selecting previously unselected package python-setuptools. Preparing to unpack .../python-setuptools_33.1.1-1_all.deb ... Unpacking python-setuptools (33.1.1-1) ... Selecting previously unselected package python-cryptography. Preparing to unpack .../python-cryptography_1.7.1-3+deb9u2_amd64.deb ... Unpacking python-cryptography (1.7.1-3+deb9u2) ... Selecting previously unselected package libdsdp-5.8gf. Preparing to unpack .../libdsdp-5.8gf_5.8-9.4_amd64.deb ... Unpacking libdsdp-5.8gf (5.8-9.4) ... Selecting previously unselected package python-cvxopt. Preparing to unpack .../python-cvxopt_1.1.4-1.5+deb9u1_amd64.deb ... Unpacking python-cvxopt (1.1.4-1.5+deb9u1) ... Selecting previously unselected package python-dendropy. Preparing to unpack .../python-dendropy_4.2.0+dfsg-1_all.deb ... Unpacking python-dendropy (4.2.0+dfsg-1) ... Selecting previously unselected package python-funcsigs. Preparing to unpack .../python-funcsigs_1.0.2-3_all.deb ... Unpacking python-funcsigs (1.0.2-3) ... Selecting previously unselected package python-webencodings. Preparing to unpack .../python-webencodings_0.5-2_all.deb ... Unpacking python-webencodings (0.5-2) ... Selecting previously unselected package python-html5lib. Preparing to unpack .../python-html5lib_0.999999999-1_all.deb ... Unpacking python-html5lib (0.999999999-1) ... Selecting previously unselected package python-jdcal. Preparing to unpack .../python-jdcal_1.0-1.2~deb9u1_all.deb ... Unpacking python-jdcal (1.0-1.2~deb9u1) ... Preparing to unpack .../python-mysqldb_1.3.7-1.1_amd64.deb ... Unpacking python-mysqldb (1.3.7-1.1) over (1.2.3-2.1) ... Selecting previously unselected package python-numexpr. Preparing to unpack .../python-numexpr_2.6.1-4_amd64.deb ... Unpacking python-numexpr (2.6.1-4) ... Selecting previously unselected package python-openpyxl. Preparing to unpack .../python-openpyxl_2.3.0-3_all.deb ... Unpacking python-openpyxl (2.3.0-3) ... Selecting previously unselected package python-openssl. Preparing to unpack .../python-openssl_16.2.0-1_all.deb ... Unpacking python-openssl (16.2.0-1) ... Selecting previously unselected package python-patsy. Preparing to unpack .../python-patsy_0.4.1+git34-ga5b54c2-1_all.deb ... Unpacking python-patsy (0.4.1+git34-ga5b54c2-1) ... Selecting previously unselected package python-pbr. Preparing to unpack .../python-pbr_1.10.0-1_all.deb ... Unpacking python-pbr (1.10.0-1) ... Preparing to unpack .../python-pil_4.0.0-4+deb9u1_amd64.deb ... Unpacking python-pil:amd64 (4.0.0-4+deb9u1) over (2.6.1-2+deb8u3) ... Preparing to unpack .../python-pyfits_1%3a3.4-4_amd64.deb ... Unpacking python-pyfits (1:3.4-4) over (1:3.3-2+b1) ... Selecting previously unselected package python-pygraphviz. Preparing to unpack .../python-pygraphviz_1.4~rc1-1_amd64.deb ... Unpacking python-pygraphviz (1.4~rc1-1) ... Selecting previously unselected package python-singledispatch. Preparing to unpack .../python-singledispatch_3.4.0.3-2_all.deb ... Unpacking python-singledispatch (3.4.0.3-2) ... Selecting previously unselected package python-rpy2. Preparing to unpack .../python-rpy2_2.8.5-1_amd64.deb ... Unpacking python-rpy2 (2.8.5-1) ... Selecting previously unselected package python-ruffus. Preparing to unpack .../python-ruffus_2.6.3+dfsg-4_all.deb ... Unpacking python-ruffus (2.6.3+dfsg-4) ... Selecting previously unselected package python-simplejson. Preparing to unpack .../python-simplejson_3.10.0-1_amd64.deb ... Unpacking python-simplejson (3.10.0-1) ... Selecting previously unselected package python-sklearn-lib. Preparing to unpack .../python-sklearn-lib_0.18-5_amd64.deb ... Unpacking python-sklearn-lib (0.18-5) ... Selecting previously unselected package python-sklearn. Preparing to unpack .../python-sklearn_0.18-5_all.deb ... Unpacking python-sklearn (0.18-5) ... Selecting previously unselected package python-sympy-doc. Preparing to unpack .../python-sympy-doc_1.0-3_all.deb ... Unpacking python-sympy-doc (1.0-3) ... Selecting previously unselected package python-tables-lib. Preparing to unpack .../python-tables-lib_3.3.0-5_amd64.deb ... Unpacking python-tables-lib (3.3.0-5) ... Selecting previously unselected package python-tables-data. Preparing to unpack .../python-tables-data_3.3.0-5_all.deb ... Unpacking python-tables-data (3.3.0-5) ... Selecting previously unselected package python-tables. Preparing to unpack .../python-tables_3.3.0-5_all.deb ... Unpacking python-tables (3.3.0-5) ... Selecting previously unselected package python-xlrd. Preparing to unpack .../python-xlrd_1.0.0-1_all.deb ... Unpacking python-xlrd (1.0.0-1) ... Selecting previously unselected package python-xlwt. Preparing to unpack .../python-xlwt_0.7.5+debian1-1_all.deb ... Unpacking python-xlwt (0.7.5+debian1-1) ... Selecting previously unselected package python3-bs4. Preparing to unpack .../python3-bs4_4.5.3-1_all.deb ... Unpacking python3-bs4 (4.5.3-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../python3-chardet_2.3.0-2_all.deb ... Unpacking python3-chardet (2.3.0-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../python3-six_1.10.0-3_all.deb ... Unpacking python3-six (1.10.0-3) ... Selecting previously unselected package python3-webencodings. Preparing to unpack .../python3-webencodings_0.5-2_all.deb ... Unpacking python3-webencodings (0.5-2) ... Selecting previously unselected package python3-html5lib. Preparing to unpack .../python3-html5lib_0.999999999-1_all.deb ... Unpacking python3-html5lib (0.999999999-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../python3-pil_4.0.0-4+deb9u1_amd64.deb ... Unpacking python3-pil:amd64 (4.0.0-4+deb9u1) ... Selecting previously unselected package python3-py. Preparing to unpack .../python3-py_1.4.32-3_all.deb ... Unpacking python3-py (1.4.32-3) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../python3-pytest_3.0.6-1_all.deb ... Unpacking python3-pytest (3.0.6-1) ... Selecting previously unselected package python3-renderpm:amd64. Preparing to unpack .../python3-renderpm_3.3.0-2+deb9u1_amd64.deb ... Unpacking python3-renderpm:amd64 (3.3.0-2+deb9u1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../python3-yaml_3.12-1_amd64.deb ... Unpacking python3-yaml (3.12-1) ... Selecting previously unselected package qt-at-spi:amd64. Preparing to unpack .../qt-at-spi_0.4.0-5_amd64.deb ... Unpacking qt-at-spi:amd64 (0.4.0-5) ... Selecting previously unselected package qt5-gtk-platformtheme:amd64. Preparing to unpack .../qt5-gtk-platformtheme_5.7.1+dfsg-3+deb9u2_amd64.deb ... Unpacking qt5-gtk-platformtheme:amd64 (5.7.1+dfsg-3+deb9u2) ... Selecting previously unselected package qtltools. Preparing to unpack .../qtltools_1.1+dfsg-1_amd64.deb ... Unpacking qtltools (1.1+dfsg-1) ... Selecting previously unselected package qttranslations5-l10n. Preparing to unpack .../qttranslations5-l10n_5.7.1~20161021-1_all.deb ... Unpacking qttranslations5-l10n (5.7.1~20161021-1) ... Preparing to unpack .../r-cran-boot_1.3-18-2_all.deb ... Unpacking r-cran-boot (1.3-18-2) over (1.3-13-1) ... Preparing to unpack .../r-cran-foreign_0.8.67-1_amd64.deb ... Unpacking r-cran-foreign (0.8.67-1) over (0.8.61-1) ... Preparing to unpack .../r-cran-nlme_3.1.129-1_amd64.deb ... Unpacking r-cran-nlme (3.1.129-1) over (3.1.117-1) ... Preparing to unpack .../r-cran-mgcv_1.8-16-1_amd64.deb ... Unpacking r-cran-mgcv (1.8-16-1) over (1.8-3-1) ... Preparing to unpack .../r-cran-class_7.3-14-1_amd64.deb ... Unpacking r-cran-class (7.3-14-1) over (7.3-11-1) ... Preparing to unpack .../r-cran-nnet_7.3-12-1_amd64.deb ... Unpacking r-cran-nnet (7.3-12-1) over (7.3-8-1) ... Preparing to unpack .../r-cran-spatial_7.3-11-1_amd64.deb ... Unpacking r-cran-spatial (7.3-11-1) over (7.3-8-1) ... Preparing to unpack .../r-recommended_3.3.3-1_all.deb ... Unpacking r-recommended (3.3.3-1) over (3.1.1-1+deb8u1) ... Selecting previously unselected package r-base. Preparing to unpack .../r-base_3.3.3-1_all.deb ... Unpacking r-base (3.3.3-1) ... Preparing to unpack .../r-base-dev_3.3.3-1_all.deb ... Unpacking r-base-dev (3.3.3-1) over (3.1.1-1+deb8u1) ... Preparing to unpack .../r-bioc-biocgenerics_0.20.0-1_all.deb ... Unpacking r-bioc-biocgenerics (0.20.0-1) over (0.10.0-1) ... Preparing to unpack .../r-bioc-biobase_2.34.0-1_amd64.deb ... Unpacking r-bioc-biobase (2.34.0-1) over (2.24.0-1) ... Selecting previously unselected package r-bioc-s4vectors. Preparing to unpack .../r-bioc-s4vectors_0.12.1-2+b1_amd64.deb ... Unpacking r-bioc-s4vectors (0.12.1-2+b1) ... Preparing to unpack .../r-bioc-iranges_2.8.1-1+b1_amd64.deb ... Unpacking r-bioc-iranges (2.8.1-1+b1) over (1.22.10-1) ... Preparing to unpack .../r-cran-dbi_0.5-1-1_amd64.deb ... Unpacking r-cran-dbi (0.5-1-1) over (0.3.1-1) ... Selecting previously unselected package r-cran-memoise. Preparing to unpack .../r-cran-memoise_1.0.0-1_all.deb ... Unpacking r-cran-memoise (1.0.0-1) ... Preparing to unpack .../r-cran-rsqlite_1.1-2-1_amd64.deb ... Unpacking r-cran-rsqlite (1.1-2-1) over (0.11.4-3) ... Preparing to unpack .../r-bioc-annotationdbi_1.36.1-2_all.deb ... Unpacking r-bioc-annotationdbi (1.36.1-2) over (1.26.1-1) ... Preparing to unpack .../r-cran-xml_3.98-1.5-1_amd64.deb ... Unpacking r-cran-xml (3.98-1.5-1) over (3.98-1.1-1) ... Selecting previously unselected package r-cran-xtable. Preparing to unpack .../r-cran-xtable_1%3a1.8-2-1_all.deb ... Unpacking r-cran-xtable (1:1.8-2-1) ... Preparing to unpack .../r-cran-rcurl_1.95-4.8-2_amd64.deb ... Unpacking r-cran-rcurl (1.95-4.8-2) over (1.95-4.3-1+deb8u1) ... Selecting previously unselected package r-bioc-annotate. Preparing to unpack .../r-bioc-annotate_1.52.1+dfsg-1_amd64.deb ... Unpacking r-bioc-annotate (1.52.1+dfsg-1) ... Selecting previously unselected package r-bioc-biocinstaller. Preparing to unpack .../r-bioc-biocinstaller_1.24.0-1_all.deb ... Unpacking r-bioc-biocinstaller (1.24.0-1) ... Selecting previously unselected package r-cran-httpuv. Preparing to unpack .../r-cran-httpuv_1.3.3-3_amd64.deb ... Unpacking r-cran-httpuv (1.3.3-3) ... Selecting previously unselected package r-cran-jsonlite. Preparing to unpack .../r-cran-jsonlite_1.2-1_amd64.deb ... Unpacking r-cran-jsonlite (1.2-1) ... Selecting previously unselected package r-cran-r6. Preparing to unpack .../r-cran-r6_2.2.0-2_all.deb ... Unpacking r-cran-r6 (2.2.0-2) ... Selecting previously unselected package r-cran-sourcetools. Preparing to unpack .../r-cran-sourcetools_0.1.5-1_amd64.deb ... Unpacking r-cran-sourcetools (0.1.5-1) ... Selecting previously unselected package r-cran-shiny. Preparing to unpack .../r-cran-shiny_1.0.0+dfsg-1_all.deb ... Unpacking r-cran-shiny (1.0.0+dfsg-1) ... Selecting previously unselected package r-bioc-interactivedisplaybase. Preparing to unpack .../r-bioc-interactivedisplaybase_1.12.0-1_all.deb ... Unpacking r-bioc-interactivedisplaybase (1.12.0-1) ... Selecting previously unselected package r-cran-curl. Preparing to unpack .../r-cran-curl_2.3-1_amd64.deb ... Unpacking r-cran-curl (2.3-1) ... Selecting previously unselected package r-cran-openssl. Preparing to unpack .../r-cran-openssl_0.9.6-1_amd64.deb ... Unpacking r-cran-openssl (0.9.6-1) ... Selecting previously unselected package r-cran-httr. Preparing to unpack .../r-cran-httr_1.2.1-1_all.deb ... Unpacking r-cran-httr (1.2.1-1) ... Selecting previously unselected package r-bioc-annotationhub. Preparing to unpack .../r-bioc-annotationhub_2.6.4-1_all.deb ... Unpacking r-bioc-annotationhub (2.6.4-1) ... Selecting previously unselected package r-cran-lambda.r. Preparing to unpack .../r-cran-lambda.r_1.1.9-1_all.deb ... Unpacking r-cran-lambda.r (1.1.9-1) ... Selecting previously unselected package r-cran-futile.options. Preparing to unpack .../r-cran-futile.options_1.0.0-2_all.deb ... Unpacking r-cran-futile.options (1.0.0-2) ... Selecting previously unselected package r-cran-futile.logger. Preparing to unpack .../r-cran-futile.logger_1.4.3-1_all.deb ... Unpacking r-cran-futile.logger (1.4.3-1) ... Selecting previously unselected package r-cran-snow. Preparing to unpack .../r-cran-snow_1%3a0.4.2-1_all.deb ... Unpacking r-cran-snow (1:0.4.2-1) ... Preparing to unpack .../r-bioc-biocparallel_1.8.1-1_all.deb ... Unpacking r-bioc-biocparallel (1.8.1-1) over (0.6.1-1) ... Preparing to unpack .../r-bioc-biomart_2.30.0-1_all.deb ... Unpacking r-bioc-biomart (2.30.0-1) over (2.20.0-1) ... Selecting previously unselected package r-bioc-biomformat. Preparing to unpack .../r-bioc-biomformat_1.2.0-1_all.deb ... Unpacking r-bioc-biomformat (1.2.0-1) ... Preparing to unpack .../r-bioc-xvector_0.14.0-1+b1_amd64.deb ... Unpacking r-bioc-xvector (0.14.0-1+b1) over (0.4.0-1) ... Preparing to unpack .../r-bioc-biostrings_2.42.1-1_amd64.deb ... Unpacking r-bioc-biostrings (2.42.1-1) over (2.32.1-1) ... Preparing to unpack .../r-bioc-genomeinfodb_1.10.3-1_all.deb ... Unpacking r-bioc-genomeinfodb (1.10.3-1) over (1.0.2-2) ... Preparing to unpack .../r-bioc-genomicranges_1.26.2-1+b1_amd64.deb ... Unpacking r-bioc-genomicranges (1.26.2-1+b1) over (1.16.4-2) ... Selecting previously unselected package r-bioc-summarizedexperiment. Preparing to unpack .../r-bioc-summarizedexperiment_1.4.0-2_all.deb ... Unpacking r-bioc-summarizedexperiment (1.4.0-2) ... Preparing to unpack .../r-bioc-rsamtools_1.26.1-2+b1_amd64.deb ... Unpacking r-bioc-rsamtools (1.26.1-2+b1) over (1.16.1-2) ... Preparing to unpack .../r-bioc-genomicalignments_1.10.0-1+b1_amd64.deb ... Unpacking r-bioc-genomicalignments (1.10.0-1+b1) over (1.0.6-1) ... Preparing to unpack .../r-bioc-rtracklayer_1.34.1-1_amd64.deb ... Unpacking r-bioc-rtracklayer (1.34.1-1) over (1.24.2-1) ... Preparing to unpack .../r-bioc-genomicfeatures_1.26.2-1_all.deb ... Unpacking r-bioc-genomicfeatures (1.26.2-1) over (1.16.3-1) ... Preparing to unpack .../r-bioc-bsgenome_1.42.0-2_all.deb ... Unpacking r-bioc-bsgenome (1.42.0-2) over (1.32.0-1) ... Preparing to unpack .../r-bioc-variantannotation_1.20.2-1+b1_amd64.deb ... Unpacking r-bioc-variantannotation (1.20.2-1+b1) over (1.10.5-1) ... Selecting previously unselected package r-bioc-ensembldb. Preparing to unpack .../r-bioc-ensembldb_1.6.2-1_all.deb ... Unpacking r-bioc-ensembldb (1.6.2-1) ... Preparing to unpack .../r-bioc-biovizbase_1.22.0-2_amd64.deb ... Unpacking r-bioc-biovizbase (1.22.0-2) over (1.12.3-1) ... Preparing to unpack .../r-cran-matrixstats_0.51.0-1_amd64.deb ... Unpacking r-cran-matrixstats (0.51.0-1) over (0.10.3-1) ... Preparing to unpack .../r-bioc-gviz_1.18.1-1_all.deb ... Unpacking r-bioc-gviz (1.18.1-1) over (1.8.4-1) ... Preparing to unpack .../r-bioc-cummerbund_2.16.0-2_all.deb ... Unpacking r-bioc-cummerbund (2.16.0-2) over (2.6.1-1) ... Selecting previously unselected package r-bioc-genefilter. Preparing to unpack .../r-bioc-genefilter_1.56.0-1_amd64.deb ... Unpacking r-bioc-genefilter (1.56.0-1) ... Selecting previously unselected package r-bioc-geneplotter. Preparing to unpack .../r-bioc-geneplotter_1.52.0-2_all.deb ... Unpacking r-bioc-geneplotter (1.52.0-2) ... Selecting previously unselected package r-bioc-deseq2. Preparing to unpack .../r-bioc-deseq2_1.14.1-1_amd64.deb ... Unpacking r-bioc-deseq2 (1.14.1-1) ... Selecting previously unselected package r-bioc-dnacopy. Preparing to unpack .../r-bioc-dnacopy_1.48.0-1_amd64.deb ... Unpacking r-bioc-dnacopy (1.48.0-1) ... Selecting previously unselected package r-cran-blockmodeling. Preparing to unpack .../r-cran-blockmodeling_0.1.8-1_amd64.deb ... Unpacking r-cran-blockmodeling (0.1.8-1) ... Selecting previously unselected package r-cran-crayon. Preparing to unpack .../r-cran-crayon_1.3.2-1_amd64.deb ... Unpacking r-cran-crayon (1.3.2-1) ... Selecting previously unselected package r-cran-praise. Preparing to unpack .../r-cran-praise_1.0.0-1_all.deb ... Unpacking r-cran-praise (1.0.0-1) ... Preparing to unpack .../r-cran-testthat_1.0.2-2_amd64.deb ... Unpacking r-cran-testthat (1.0.2-2) over (0.9.1-1) ... Selecting previously unselected package r-bioc-ebseq. Preparing to unpack .../r-bioc-ebseq_1.14.0-1_all.deb ... Unpacking r-bioc-ebseq (1.14.0-1) ... Selecting previously unselected package r-bioc-limma. Preparing to unpack .../r-bioc-limma_3.30.8+dfsg-1_amd64.deb ... Unpacking r-bioc-limma (3.30.8+dfsg-1) ... Selecting previously unselected package r-bioc-edger. Preparing to unpack .../r-bioc-edger_3.14.0+dfsg-1_amd64.deb ... Unpacking r-bioc-edger (3.14.0+dfsg-1) ... Preparing to unpack .../r-bioc-hilbertvis_1.32.0-1_amd64.deb ... Unpacking r-bioc-hilbertvis (1.32.0-1) over (1.24.0-1) ... Selecting previously unselected package r-bioc-mergeomics. Preparing to unpack .../r-bioc-mergeomics_1.2.0-1_all.deb ... Unpacking r-bioc-mergeomics (1.2.0-1) ... Selecting previously unselected package r-cran-glmnet. Preparing to unpack .../r-cran-glmnet_2.0-5-1_amd64.deb ... Unpacking r-cran-glmnet (2.0-5-1) ... Selecting previously unselected package r-bioc-metagenomeseq. Preparing to unpack .../r-bioc-metagenomeseq_1.16.0-2_all.deb ... Unpacking r-bioc-metagenomeseq (1.16.0-2) ... Selecting previously unselected package r-bioc-multtest. Preparing to unpack .../r-bioc-multtest_2.30.0-1_amd64.deb ... Unpacking r-bioc-multtest (2.30.0-1) ... Selecting previously unselected package r-cran-ade4. Preparing to unpack .../r-cran-ade4_1.7-5-1_amd64.deb ... Unpacking r-cran-ade4 (1.7-5-1) ... Preparing to unpack .../r-cran-ape_4.0-1_amd64.deb ... Unpacking r-cran-ape (4.0-1) over (3.1-4-1) ... Selecting previously unselected package r-cran-registry. Preparing to unpack .../r-cran-registry_0.3-1_all.deb ... Unpacking r-cran-registry (0.3-1) ... Selecting previously unselected package r-cran-pkgmaker. Preparing to unpack .../r-cran-pkgmaker_0.22-1_amd64.deb ... Unpacking r-cran-pkgmaker (0.22-1) ... Selecting previously unselected package r-cran-rngtools. Preparing to unpack .../r-cran-rngtools_1.2.4-2_amd64.deb ... Unpacking r-cran-rngtools (1.2.4-2) ... Selecting previously unselected package r-cran-gridbase. Preparing to unpack .../r-cran-gridbase_0.4-7-2_all.deb ... Unpacking r-cran-gridbase (0.4-7-2) ... Preparing to unpack .../r-cran-doparallel_1.0.10-3_amd64.deb ... Unpacking r-cran-doparallel (1.0.10-3) over (1.0.8-1) ... Selecting previously unselected package r-cran-nmf. Preparing to unpack .../r-cran-nmf_0.20.6-1_amd64.deb ... Unpacking r-cran-nmf (0.20.6-1) ... Selecting previously unselected package r-cran-irlba. Preparing to unpack .../r-cran-irlba_2.1.2-1_amd64.deb ... Unpacking r-cran-irlba (2.1.2-1) ... Selecting previously unselected package r-cran-igraph. Preparing to unpack .../r-cran-igraph_1.0.1-1+deb9u1_amd64.deb ... Unpacking r-cran-igraph (1.0.1-1+deb9u1) ... Preparing to unpack .../r-cran-vegan_2.4-2-1_amd64.deb ... Unpacking r-cran-vegan (2.4-2-1) over (2.0-10-1) ... Selecting previously unselected package r-bioc-phyloseq. Preparing to unpack .../r-bioc-phyloseq_1.19.1-2_all.deb ... Unpacking r-bioc-phyloseq (1.19.1-2) ... Selecting previously unselected package r-bioc-qvalue. Preparing to unpack .../r-bioc-qvalue_2.6.0-1_all.deb ... Unpacking r-bioc-qvalue (2.6.0-1) ... Preparing to unpack .../r-bioc-shortread_1.32.0-1+b1_amd64.deb ... Unpacking r-bioc-shortread (1.32.0-1+b1) over (1.22.0-1) ... Preparing to unpack .../r-cran-abind_1.4-5-1_all.deb ... Unpacking r-cran-abind (1.4-5-1) over (1.4-0-2) ... Selecting previously unselected package r-cran-segmented. Preparing to unpack .../r-cran-segmented_0.5-1.4-1_all.deb ... Unpacking r-cran-segmented (0.5-1.4-1) ... Selecting previously unselected package r-cran-seqinr. Preparing to unpack .../r-cran-seqinr_3.3-3-1_amd64.deb ... Unpacking r-cran-seqinr (3.3-3-1) ... Selecting previously unselected package r-cran-dplyr. Preparing to unpack .../r-cran-dplyr_0.5.0-1_amd64.deb ... Unpacking r-cran-dplyr (0.5.0-1) ... Preparing to unpack .../r-cran-sp_1%3a1.2-4-1_amd64.deb ... Unpacking r-cran-sp (1:1.2-4-1) over (1:1.0-15-1) ... Selecting previously unselected package r-cran-learnbayes. Preparing to unpack .../r-cran-learnbayes_2.15-3_all.deb ... Unpacking r-cran-learnbayes (2.15-3) ... Selecting previously unselected package r-cran-deldir. Preparing to unpack .../r-cran-deldir_0.1-12-1_amd64.deb ... Unpacking r-cran-deldir (0.1-12-1) ... Selecting previously unselected package r-cran-coda. Preparing to unpack .../r-cran-coda_0.19-1-1_all.deb ... Unpacking r-cran-coda (0.19-1-1) ... Selecting previously unselected package r-cran-gmodels. Preparing to unpack .../r-cran-gmodels_2.16.2-2_all.deb ... Unpacking r-cran-gmodels (2.16.2-2) ... Selecting previously unselected package r-cran-spdep. Preparing to unpack .../r-cran-spdep_0.6-9-1_amd64.deb ... Unpacking r-cran-spdep (0.6-9-1) ... Selecting previously unselected package r-cran-adegenet. Preparing to unpack .../r-cran-adegenet_2.0.1-1_amd64.deb ... Unpacking r-cran-adegenet (2.0.1-1) ... Selecting previously unselected package r-cran-adegraphics. Preparing to unpack .../r-cran-adegraphics_1.0-6-1_all.deb ... Unpacking r-cran-adegraphics (1.0-6-1) ... Selecting previously unselected package r-cran-prettyunits. Preparing to unpack .../r-cran-prettyunits_1.0.2-1_all.deb ... Unpacking r-cran-prettyunits (1.0.2-1) ... Selecting previously unselected package r-cran-progress. Preparing to unpack .../r-cran-progress_1.1.2-1_all.deb ... Unpacking r-cran-progress (1.1.2-1) ... Selecting previously unselected package r-cran-rncl. Preparing to unpack .../r-cran-rncl_0.8.2-1_amd64.deb ... Unpacking r-cran-rncl (0.8.2-1) ... Selecting previously unselected package r-cran-xml2. Preparing to unpack .../r-cran-xml2_1.1.0-1_amd64.deb ... Unpacking r-cran-xml2 (1.1.0-1) ... Selecting previously unselected package r-cran-reshape. Preparing to unpack .../r-cran-reshape_0.8.6-1_all.deb ... Unpacking r-cran-reshape (0.8.6-1) ... Selecting previously unselected package r-cran-bold. Preparing to unpack .../r-cran-bold_0.4.0-1_all.deb ... Unpacking r-cran-bold (0.4.0-1) ... Selecting previously unselected package r-cran-rredlist. Preparing to unpack .../r-cran-rredlist_0.2.0-1_all.deb ... Unpacking r-cran-rredlist (0.2.0-1) ... Selecting previously unselected package r-cran-rentrez. Preparing to unpack .../r-cran-rentrez_1.0.4-1_all.deb ... Unpacking r-cran-rentrez (1.0.4-1) ... Selecting previously unselected package r-cran-rotl. Preparing to unpack .../r-cran-rotl_3.0.1-1_all.deb ... Unpacking r-cran-rotl (3.0.1-1) ... Selecting previously unselected package r-cran-solrium. Preparing to unpack .../r-cran-solrium_0.4.0-1_all.deb ... Unpacking r-cran-solrium (0.4.0-1) ... Selecting previously unselected package r-cran-ritis. Preparing to unpack .../r-cran-ritis_0.5.4-1_all.deb ... Unpacking r-cran-ritis (0.5.4-1) ... Selecting previously unselected package r-cran-taxize. Preparing to unpack .../r-cran-taxize_0.8.0-1_all.deb ... Unpacking r-cran-taxize (0.8.0-1) ... Selecting previously unselected package r-cran-uuid. Preparing to unpack .../r-cran-uuid_0.1.2-8_amd64.deb ... Unpacking r-cran-uuid (0.1.2-8) ... Selecting previously unselected package r-cran-tidyr. Preparing to unpack .../r-cran-tidyr_0.6.1-1_amd64.deb ... Unpacking r-cran-tidyr (0.6.1-1) ... Selecting previously unselected package r-cran-rnexml. Preparing to unpack .../r-cran-rnexml_2.0.7-1_all.deb ... Unpacking r-cran-rnexml (2.0.7-1) ... Selecting previously unselected package r-cran-phylobase. Preparing to unpack .../r-cran-phylobase_0.8.2-1_amd64.deb ... Unpacking r-cran-phylobase (0.8.2-1) ... Selecting previously unselected package r-cran-adephylo. Preparing to unpack .../r-cran-adephylo_1.1-10-2_amd64.deb ... Unpacking r-cran-adephylo (1.1-10-2) ... Selecting previously unselected package r-cran-backports. Preparing to unpack .../r-cran-backports_1.0.5-1_all.deb ... Unpacking r-cran-backports (1.0.5-1) ... Preparing to unpack .../r-cran-checkmate_1.8.2-1_amd64.deb ... Unpacking r-cran-checkmate (1.8.2-1) over (1.5.0-1) ... Preparing to unpack .../r-cran-bbmisc_1.10-1_amd64.deb ... Unpacking r-cran-bbmisc (1.10-1) over (1.7-1) ... Preparing to unpack .../r-cran-fail_1.3-1_amd64.deb ... Unpacking r-cran-fail (1.3-1) over (1.2-1) ... Preparing to unpack .../r-cran-batchjobs_1.6-1_amd64.deb ... Unpacking r-cran-batchjobs (1.6-1) over (1.4-1) ... Selecting previously unselected package r-cran-numderiv. Preparing to unpack .../r-cran-numderiv_2016.8-1-1_all.deb ... Unpacking r-cran-numderiv (2016.8-1-1) ... Selecting previously unselected package r-cran-bbmle. Preparing to unpack .../r-cran-bbmle_1.0.18-2_all.deb ... Unpacking r-cran-bbmle (1.0.18-2) ... Selecting previously unselected package r-cran-bio3d. Preparing to unpack .../r-cran-bio3d_2.3-1-1_amd64.deb ... Unpacking r-cran-bio3d (2.3-1-1) ... Selecting previously unselected package r-cran-combinat. Preparing to unpack .../r-cran-combinat_0.0-8-4_all.deb ... Unpacking r-cran-combinat (0.0-8-4) ... Selecting previously unselected package r-cran-distory. Preparing to unpack .../r-cran-distory_1.4.2-1_amd64.deb ... Unpacking r-cran-distory (1.4.2-1) ... Preparing to unpack .../r-cran-domc_1.3.4-1_all.deb ... Unpacking r-cran-domc (1.3.4-1) over (1.3.3-1) ... Selecting previously unselected package r-cran-ellipse. Preparing to unpack .../r-cran-ellipse_0.3-8-1_all.deb ... Unpacking r-cran-ellipse (0.3-8-1) ... Selecting previously unselected package r-cran-fastmatch. Preparing to unpack .../r-cran-fastmatch_1.0-4-1_amd64.deb ... Unpacking r-cran-fastmatch (1.0-4-1) ... Selecting previously unselected package r-cran-spam. Preparing to unpack .../r-cran-spam_1.4-0-1_amd64.deb ... Unpacking r-cran-spam (1.4-0-1) ... Preparing to unpack .../r-cran-maps_3.1.1-1_amd64.deb ... Unpacking r-cran-maps (3.1.1-1) over (2.3-7-1) ... Selecting previously unselected package r-cran-fields. Preparing to unpack .../r-cran-fields_8.10-1_amd64.deb ... Unpacking r-cran-fields (8.10-1) ... Selecting previously unselected package r-cran-globals. Preparing to unpack .../r-cran-globals_0.8.0-1_amd64.deb ... Unpacking r-cran-globals (0.8.0-1) ... Selecting previously unselected package r-cran-listenv. Preparing to unpack .../r-cran-listenv_0.6.0-1_amd64.deb ... Unpacking r-cran-listenv (0.6.0-1) ... Selecting previously unselected package r-cran-future. Preparing to unpack .../r-cran-future_1.2.0-1_all.deb ... Unpacking r-cran-future (1.2.0-1) ... Preparing to unpack .../r-cran-genabel_1.8-0-1+b1_amd64.deb ... Unpacking r-cran-genabel (1.8-0-1+b1) over (1.8-0-1) ... Selecting previously unselected package r-cran-googlevis. Preparing to unpack .../r-cran-googlevis_0.6.2-1_all.deb ... Unpacking r-cran-googlevis (0.6.2-1) ... Selecting previously unselected package r-cran-htmlwidgets. Preparing to unpack .../r-cran-htmlwidgets_0.8-1_amd64.deb ... Unpacking r-cran-htmlwidgets (0.8-1) ... Selecting previously unselected package r-cran-minpack.lm. Preparing to unpack .../r-cran-minpack.lm_1.2-1-1_amd64.deb ... Unpacking r-cran-minpack.lm (1.2-1-1) ... Selecting previously unselected package r-cran-raster. Preparing to unpack .../r-cran-raster_2.5-8-1_amd64.deb ... Unpacking r-cran-raster (2.5-8-1) ... Selecting previously unselected package r-cran-readxl. Preparing to unpack .../r-cran-readxl_0.1.1-1+deb9u2_amd64.deb ... Unpacking r-cran-readxl (0.1.1-1+deb9u2) ... Selecting previously unselected package r-cran-shape. Preparing to unpack .../r-cran-shape_1.4.2-1_all.deb ... Unpacking r-cran-shape (1.4.2-1) ... Selecting previously unselected package r-cran-zoo. Preparing to unpack .../r-cran-zoo_1.7-14-1_amd64.deb ... Unpacking r-cran-zoo (1.7-14-1) ... Selecting previously unselected package r-cran-luminescence. Preparing to unpack .../r-cran-luminescence_0.6.4-1_amd64.deb ... Unpacking r-cran-luminescence (0.6.4-1) ... Preparing to unpack .../r-cran-mapproj_1.2-4-1_amd64.deb ... Unpacking r-cran-mapproj (1.2-4-1) over (1.2-2-1) ... Preparing to unpack .../r-cran-optparse_1.3.2-1_all.deb ... Unpacking r-cran-optparse (1.3.2-1) over (1.2.0-1) ... Selecting previously unselected package r-cran-quadprog. Preparing to unpack .../r-cran-quadprog_1.5-5-2_amd64.deb ... Unpacking r-cran-quadprog (1.5-5-2) ... Selecting previously unselected package r-cran-phangorn. Preparing to unpack .../r-cran-phangorn_2.1.1-1_amd64.deb ... Unpacking r-cran-phangorn (2.1.1-1) ... Preparing to unpack .../r-cran-proto_1.0.0-1_amd64.deb ... Unpacking r-cran-proto (1.0.0-1) over (0.3-10-1) ... Preparing to unpack .../r-cran-r.methodss3_1.7.1-1_amd64.deb ... Unpacking r-cran-r.methodss3 (1.7.1-1) over (1.6.1-1) ... Selecting previously unselected package r-cran-r.oo. Preparing to unpack .../r-cran-r.oo_1.21.0-1_amd64.deb ... Unpacking r-cran-r.oo (1.21.0-1) ... Selecting previously unselected package r-cran-r.utils. Preparing to unpack .../r-cran-r.utils_2.5.0-1_amd64.deb ... Unpacking r-cran-r.utils (2.5.0-1) ... Selecting previously unselected package r-cran-r.cache. Preparing to unpack .../r-cran-r.cache_0.12.0-2_amd64.deb ... Unpacking r-cran-r.cache (0.12.0-2) ... Selecting previously unselected package r-cran-pscbs. Preparing to unpack .../r-cran-pscbs_0.62.0-1_amd64.deb ... Unpacking r-cran-pscbs (0.62.0-1) ... Preparing to unpack .../r-cran-qtl_1.40-8-1_amd64.deb ... Unpacking r-cran-qtl (1.40-8-1) over (1.33-7-1) ... Selecting previously unselected package r-cran-randomforest. Preparing to unpack .../r-cran-randomforest_4.6-12-1_amd64.deb ... Unpacking r-cran-randomforest (4.6-12-1) ... Selecting previously unselected package r-cran-rgl. Preparing to unpack .../r-cran-rgl_0.96.0-1_amd64.deb ... Unpacking r-cran-rgl (0.96.0-1) ... Selecting previously unselected package r-cran-rlumshiny. Preparing to unpack .../r-cran-rlumshiny_0.1.1-1_amd64.deb ... Unpacking r-cran-rlumshiny (0.1.1-1) ... Selecting previously unselected package r-cran-scatterd3. Preparing to unpack .../r-cran-scatterd3_0.8.1+dfsg-1_all.deb ... Unpacking r-cran-scatterd3 (0.8.1+dfsg-1) ... Selecting previously unselected package r-cran-shinybs. Preparing to unpack .../r-cran-shinybs_0.61-1_all.deb ... Unpacking r-cran-shinybs (0.61-1) ... Preparing to unpack .../r-cran-tcltk2_1.2-11-1_all.deb ... Unpacking r-cran-tcltk2 (1.2-11-1) over (1.2-10-1) ... Selecting previously unselected package r-cran-treescape. Preparing to unpack .../r-cran-treescape_1.10.18-6_amd64.deb ... Unpacking r-cran-treescape (1.10.18-6) ... Selecting previously unselected package ruby-did-you-mean. Preparing to unpack .../ruby-did-you-mean_1.0.0-2_all.deb ... Unpacking ruby-did-you-mean (1.0.0-2) ... Selecting previously unselected package ruby-minitest. Preparing to unpack .../ruby-minitest_5.9.0-1_all.deb ... Unpacking ruby-minitest (5.9.0-1) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../ruby-net-telnet_0.1.1-2_all.deb ... Unpacking ruby-net-telnet (0.1.1-2) ... Selecting previously unselected package ruby-power-assert. Preparing to unpack .../ruby-power-assert_0.3.0-1_all.deb ... Unpacking ruby-power-assert (0.3.0-1) ... Selecting previously unselected package ruby-test-unit. Preparing to unpack .../ruby-test-unit_3.1.7-2_all.deb ... Unpacking ruby-test-unit (3.1.7-2) ... Selecting previously unselected package libruby2.3:amd64. Preparing to unpack .../libruby2.3_2.3.3-1+deb9u8_amd64.deb ... Unpacking libruby2.3:amd64 (2.3.3-1+deb9u8) ... Selecting previously unselected package ruby2.3. Preparing to unpack .../ruby2.3_2.3.3-1+deb9u8_amd64.deb ... Unpacking ruby2.3 (2.3.3-1+deb9u8) ... Preparing to unpack .../ruby_1%3a2.3.3_amd64.deb ... Unpacking ruby (1:2.3.3) over (1:2.1.5+deb8u2) ... Selecting previously unselected package rake. Preparing to unpack .../rake_10.5.0-2+deb9u1_all.deb ... Unpacking rake (10.5.0-2+deb9u1) ... Selecting previously unselected package rambo-k. Preparing to unpack .../rambo-k_1.21+dfsg-1_all.deb ... Unpacking rambo-k (1.21+dfsg-1) ... Selecting previously unselected package rapmap. Preparing to unpack .../rapmap_0.4.0+dfsg-2_amd64.deb ... Unpacking rapmap (0.4.0+dfsg-2) ... Selecting previously unselected package rdp-readseq. Preparing to unpack .../rdp-readseq_2.0.2-2_all.deb ... Unpacking rdp-readseq (2.0.2-2) ... Selecting previously unselected package rdp-alignment. Preparing to unpack .../rdp-alignment_1.2.0-2_all.deb ... Unpacking rdp-alignment (1.2.0-2) ... Selecting previously unselected package rdp-classifier. Preparing to unpack .../rdp-classifier_2.10.2-1_all.deb ... Unpacking rdp-classifier (2.10.2-1) ... Selecting previously unselected package rdp-classifier-doc. Preparing to unpack .../rdp-classifier-doc_2.10.2-1_all.deb ... Unpacking rdp-classifier-doc (2.10.2-1) ... Selecting previously unselected package snpomatic. Preparing to unpack .../snpomatic_1.0-3+b1_amd64.deb ... Unpacking snpomatic (1.0-3+b1) ... Preparing to unpack .../tabix_1.3.2-2_amd64.deb ... Unpacking tabix (1.3.2-2) over (1.1-1) ... Selecting previously unselected package reapr. Preparing to unpack .../reapr_1.0.18+dfsg-3_amd64.deb ... Unpacking reapr (1.0.18+dfsg-3) ... Selecting previously unselected package repeatmasker-recon. Preparing to unpack .../repeatmasker-recon_1.08-3+b1_amd64.deb ... Unpacking repeatmasker-recon (1.08-3+b1) ... Selecting previously unselected package rhino. Preparing to unpack .../rhino_1.7.7.1-1_all.deb ... Unpacking rhino (1.7.7.1-1) ... Selecting previously unselected package rna-star. Preparing to unpack .../rna-star_2.5.2b+dfsg-1_amd64.deb ... Unpacking rna-star (2.5.2b+dfsg-1) ... Selecting previously unselected package roary. Preparing to unpack .../roary_3.8.0+dfsg-1_all.deb ... Unpacking roary (3.8.0+dfsg-1) ... Preparing to unpack .../bowtie_1.1.2-6_amd64.deb ... Unpacking bowtie (1.1.2-6) over (1.1.1-2) ... Selecting previously unselected package rsem. Preparing to unpack .../rsem_1.2.31+dfsg-1_amd64.deb ... Unpacking rsem (1.2.31+dfsg-1) ... Preparing to unpack .../saint_2.5.0+dfsg-2+b1_amd64.deb ... Unpacking saint (2.5.0+dfsg-2+b1) over (2.4.0+dfsg-1) ... Selecting previously unselected package libjs-modernizr. Preparing to unpack .../libjs-modernizr_2.6.2+ds1-1_all.deb ... Unpacking libjs-modernizr (2.6.2+ds1-1) ... Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../sphinx-rtd-theme-common_0.1.9-1_all.deb ... Unpacking sphinx-rtd-theme-common (0.1.9-1) ... Selecting previously unselected package salmon. Preparing to unpack .../salmon_0.7.2+ds1-2+b1_amd64.deb ... Unpacking salmon (0.7.2+ds1-2+b1) ... Preparing to unpack .../sane-utils_1.0.25-4.1_amd64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking sane-utils (1.0.25-4.1) over (1.0.24-8+deb8u2) ... Selecting previously unselected package scrm. Preparing to unpack .../scrm_1.7.2-1+b1_amd64.deb ... Unpacking scrm (1.7.2-1+b1) ... Selecting previously unselected package scythe. Preparing to unpack .../scythe_0.994-4_amd64.deb ... Unpacking scythe (0.994-4) ... Preparing to unpack .../seaview_1%3a4.6.1.2-2_amd64.deb ... Unpacking seaview (1:4.6.1.2-2) over (1:4.5.3.1-2) ... Selecting previously unselected package seer. Preparing to unpack .../seer_1.1.2-3_amd64.deb ... Unpacking seer (1.1.2-3) ... Preparing to unpack .../seqan-apps_2.3.1+dfsg-4_amd64.deb ... Unpacking seqan-apps (2.3.1+dfsg-4) over (1.4.1+dfsg-2) ... Selecting previously unselected package seqprep. Preparing to unpack .../seqprep_1.3.2-1_amd64.deb ... Unpacking seqprep (1.3.2-1) ... Selecting previously unselected package sga. Preparing to unpack .../sga_0.10.15-2_amd64.deb ... Unpacking sga (0.10.15-2) ... Selecting previously unselected package sickle. Preparing to unpack .../sickle_1.33-1+b1_amd64.deb ... Unpacking sickle (1.33-1+b1) ... Selecting previously unselected package smithwaterman. Preparing to unpack .../smithwaterman_0.0+20160702-1+b1_amd64.deb ... Unpacking smithwaterman (0.0+20160702-1+b1) ... Selecting previously unselected package smrtanalysis. Preparing to unpack .../smrtanalysis_0~20161126_all.deb ... Unpacking smrtanalysis (0~20161126) ... Selecting previously unselected package snap-aligner. Preparing to unpack .../snap-aligner_1.0~beta.18+dfsg-1_amd64.deb ... Unpacking snap-aligner (1.0~beta.18+dfsg-1) ... Selecting previously unselected package sniffles. Preparing to unpack .../sniffles_1.0.2+ds-1_amd64.deb ... Unpacking sniffles (1.0.2+ds-1) ... Preparing to unpack .../soapdenovo2_240+dfsg1-2_amd64.deb ... Unpacking soapdenovo2 (240+dfsg1-2) over (240+dfsg-2) ... Selecting previously unselected package sortmerna. Preparing to unpack .../sortmerna_2.1-1+b1_amd64.deb ... Unpacking sortmerna (2.1-1+b1) ... Selecting previously unselected package spaced. Preparing to unpack .../spaced_1.0.2+dfsg-1+b1_amd64.deb ... Unpacking spaced (1.0.2+dfsg-1+b1) ... Selecting previously unselected package sprai. Preparing to unpack .../sprai_0.9.9.22+dfsg-1_amd64.deb ... Unpacking sprai (0.9.9.22+dfsg-1) ... Selecting previously unselected package spread-phy. Preparing to unpack .../spread-phy_1.0.7+dfsg-1_all.deb ... Unpacking spread-phy (1.0.7+dfsg-1) ... Preparing to unpack .../sra-toolkit_2.8.1-2+dfsg-2_amd64.deb ... Unpacking sra-toolkit (2.8.1-2+dfsg-2) over (2.3.5-2+dfsg-1) ... Selecting previously unselected package srst2. Preparing to unpack .../srst2_0.2.0-4_amd64.deb ... Unpacking srst2 (0.2.0-4) ... Selecting previously unselected package sspace. Preparing to unpack .../sspace_2.1.1+dfsg-2_all.deb ... Unpacking sspace (2.1.1+dfsg-2) ... Selecting previously unselected package ssw-align. Preparing to unpack .../ssw-align_1.1-1+b1_amd64.deb ... Unpacking ssw-align (1.1-1+b1) ... Selecting previously unselected package stacks. Preparing to unpack .../stacks_1.44-2+b1_amd64.deb ... Unpacking stacks (1.44-2+b1) ... Preparing to unpack .../staden_2.0.0+b11-2+b1_amd64.deb ... Unpacking staden (2.0.0+b11-2+b1) over (2.0.0+b10-1.1) ... Preparing to unpack .../staden-common_2.0.0+b11-2_all.deb ... Unpacking staden-common (2.0.0+b11-2) over (2.0.0+b10-1.1) ... Preparing to unpack .../staden-io-lib-utils_1.14.8-2_amd64.deb ... Unpacking staden-io-lib-utils (1.14.8-2) over (1.13.7-1) ... Selecting previously unselected package subread. Preparing to unpack .../subread_1.5.1+dfsg-4_amd64.deb ... Unpacking subread (1.5.1+dfsg-4) ... Selecting previously unselected package suitename. Preparing to unpack .../suitename_0.3.070628-1+b1_amd64.deb ... Unpacking suitename (0.3.070628-1+b1) ... Selecting previously unselected package sumaclust. Preparing to unpack .../sumaclust_1.0.20-1+b1_amd64.deb ... Unpacking sumaclust (1.0.20-1+b1) ... Selecting previously unselected package sumatra. Preparing to unpack .../sumatra_1.0.20-1+b1_amd64.deb ... Unpacking sumatra (1.0.20-1+b1) ... Selecting previously unselected package sumtrees. Preparing to unpack .../sumtrees_4.2.0+dfsg-1_all.deb ... Unpacking sumtrees (4.2.0+dfsg-1) ... Selecting previously unselected package surankco. Preparing to unpack .../surankco_0.0.r5+dfsg-1_all.deb ... Unpacking surankco (0.0.r5+dfsg-1) ... Selecting previously unselected package swarm. Preparing to unpack .../swarm_2.1.12+dfsg-1_amd64.deb ... Unpacking swarm (2.1.12+dfsg-1) ... Preparing to unpack .../t-coffee_11.00.8cbe486-5_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-5) over (11.00.8cbe486-1) ... Selecting previously unselected package tantan. Preparing to unpack .../archives/tantan_13-4_amd64.deb ... Unpacking tantan (13-4) ... Preparing to unpack .../tex-gyre_20160520-1_all.deb ... Unpacking tex-gyre (20160520-1) over (20140520-1) ... Selecting previously unselected package texlive-generic-extra. Preparing to unpack .../texlive-generic-extra_2016.20170123-5_all.deb ... Unpacking texlive-generic-extra (2016.20170123-5) ... Selecting previously unselected package texlive-science. Preparing to unpack .../texlive-science_2016.20170123-5_all.deb ... Unpacking texlive-science (2016.20170123-5) ... Selecting previously unselected package texlive-science-doc. Preparing to unpack .../texlive-science-doc_2016.20170123-5_all.deb ... Unpacking texlive-science-doc (2016.20170123-5) ... Preparing to unpack .../tigr-glimmer_3.02b-1_amd64.deb ... Unpacking tigr-glimmer (3.02b-1) over (3.02-3) ... Preparing to unpack .../tophat_2.1.1+dfsg-2+b2_amd64.deb ... Unpacking tophat (2.1.1+dfsg-2+b2) over (2.0.13+dfsg-1) ... Selecting previously unselected package toppred. Preparing to unpack .../toppred_1.10-4_amd64.deb ... Unpacking toppred (1.10-4) ... Selecting previously unselected package transdecoder. Preparing to unpack .../transdecoder_3.0.1+dfsg-1_all.deb ... Unpacking transdecoder (3.0.1+dfsg-1) ... Selecting previously unselected package transrate-tools. Preparing to unpack .../transrate-tools_1.0.0-1+b1_amd64.deb ... Unpacking transrate-tools (1.0.0-1+b1) ... Preparing to unpack .../transtermhp_2.09-3+b1_amd64.deb ... Unpacking transtermhp (2.09-3+b1) over (2.09-2) ... Selecting previously unselected package treeview. Preparing to unpack .../treeview_1.1.6.4+dfsg1-2_all.deb ... Unpacking treeview (1.1.6.4+dfsg1-2) ... Selecting previously unselected package trinityrnaseq. Preparing to unpack .../trinityrnaseq_2.2.0+dfsg-2+b1_amd64.deb ... Unpacking trinityrnaseq (2.2.0+dfsg-2+b1) ... Selecting previously unselected package trinityrnaseq-examples. Preparing to unpack .../trinityrnaseq-examples_2.2.0+dfsg-2_all.deb ... Unpacking trinityrnaseq-examples (2.2.0+dfsg-2) ... Preparing to unpack .../uc-echo_1.12-9+b1_amd64.deb ... Unpacking uc-echo (1.12-9+b1) over (1.12-7) ... Selecting previously unselected package varna. Preparing to unpack .../varna_3-93+ds-1_all.deb ... Unpacking varna (3-93+ds-1) ... Preparing to unpack .../vprerex_6.5.3-1+b2_amd64.deb ... Unpacking vprerex (6.5.3-1+b2) over (6.5.3-1) ... Selecting previously unselected package vsearch. Preparing to unpack .../vsearch_2.3.4-1_amd64.deb ... Unpacking vsearch (2.3.4-1) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../xfonts-encodings_1%3a1.0.4-2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../xfonts-utils_1%3a7.7+4_amd64.deb ... Unpacking xfonts-utils (1:7.7+4) ... Selecting previously unselected package xfonts-100dpi. Preparing to unpack .../xfonts-100dpi_1%3a1.0.4+nmu1_all.deb ... Unpacking xfonts-100dpi (1:1.0.4+nmu1) ... Preparing to unpack .../acedb-other-belvu_4.9.39+dfsg.02-1_amd64.deb ... Unpacking acedb-other-belvu (4.9.39+dfsg.02-1) over (4.9.39+dfsg.01-5) ... Preparing to unpack .../acedb-other-dotter_4.9.39+dfsg.02-1_amd64.deb ... Unpacking acedb-other-dotter (4.9.39+dfsg.02-1) over (4.9.39+dfsg.01-5) ... Selecting previously unselected package astro-tasks. Preparing to unpack .../astro-tasks_1.0_all.deb ... Unpacking astro-tasks (1.0) ... Preparing to unpack .../autodock-vina_1.1.2-3+b6_amd64.deb ... Unpacking autodock-vina (1.1.2-3+b6) over (1.1.2-3+b1) ... Preparing to unpack .../critterding_1.0-beta12.1-1.3+b1_amd64.deb ... Unpacking critterding (1.0-beta12.1-1.3+b1) over (1.0-beta12.1-1.2) ... Selecting previously unselected package datamash. Preparing to unpack .../datamash_1.0.7-1_amd64.deb ... Unpacking datamash (1.0.7-1) ... Selecting previously unselected package debichem-tasks. Preparing to unpack .../debichem-tasks_0.0.6_all.deb ... Unpacking debichem-tasks (0.0.6) ... Preparing to unpack .../disulfinder_1.2.11-6_amd64.deb ... Unpacking disulfinder (1.2.11-6) over (1.2.11-4) ... Preparing to unpack .../edtsurf_0.2009-4+b1_amd64.deb ... Unpacking edtsurf (0.2009-4+b1) over (0.2009-3) ... Preparing to unpack .../ffindex_0.9.9.7-3_amd64.deb ... Unpacking ffindex (0.9.9.7-3) over (0.9.9.3-2) ... Preparing to unpack .../libffindex0_0.9.9.7-3_amd64.deb ... Unpacking libffindex0 (0.9.9.7-3) over (0.9.9.3-2) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../gnupg-l10n_2.1.18-8~deb9u4_all.deb ... Unpacking gnupg-l10n (2.1.18-8~deb9u4) ... Preparing to unpack .../gromacs_2016.1-2_amd64.deb ... Unpacking gromacs (2016.1-2) over (5.0.2-1) ... Preparing to unpack .../gromacs-data_2016.1-2_all.deb ... Unpacking gromacs-data (2016.1-2) over (5.0.2-1) ... Selecting previously unselected package libgromacs2. Preparing to unpack .../libgromacs2_2016.1-2_amd64.deb ... Unpacking libgromacs2 (2016.1-2) ... Preparing to unpack .../hhsuite_3.0~beta2+dfsg-3_amd64.deb ... Unpacking hhsuite (3.0~beta2+dfsg-3) over (2.0.16-5) ... Preparing to unpack .../hhsuite-data_3.0~beta2+dfsg-3_all.deb ... Unpacking hhsuite-data (3.0~beta2+dfsg-3) over (2.0.16-5) ... Preparing to unpack .../archives/med-bio_3.0.1_all.deb ... Unpacking med-bio (3.0.1) over (2.0) ... Preparing to unpack .../med-tasks_3.0.1_all.deb ... Unpacking med-tasks (3.0.1) over (2.0) ... Preparing to unpack .../med-config_3.0.1_all.deb ... Unpacking med-config (3.0.1) over (2.0) ... Preparing to unpack .../populations_1.2.33+svn0120106-2.1+b1_amd64.deb ... Unpacking populations (1.2.33+svn0120106-2.1+b1) over (1.2.33+svn0120106-2.1) ... Preparing to unpack .../pp-popularity-contest_1.0.6-2+b4_amd64.deb ... Unpacking pp-popularity-contest (1.0.6-2+b4) over (1.0.6-2+b1) ... Selecting previously unselected package publicsuffix. Preparing to unpack .../publicsuffix_20190415.1030-0+deb9u1_all.deb ... Unpacking publicsuffix (20190415.1030-0+deb9u1) ... Preparing to unpack .../python-mock_2.0.0-3_all.deb ... Unpacking python-mock (2.0.0-3) over (1.0.1-3) ... Preparing to unpack .../python-mpi4py_2.0.0-2.1+deb9u1_amd64.deb ... Unpacking python-mpi4py (2.0.0-2.1+deb9u1) over (1.3.1+hg20131106-2) ... Selecting previously unselected package python-statsmodels-lib. Preparing to unpack .../python-statsmodels-lib_0.8.0~rc1+git59-gef47cd9-5_amd64.deb ... Unpacking python-statsmodels-lib (0.8.0~rc1+git59-gef47cd9-5) ... Selecting previously unselected package python-statsmodels. Preparing to unpack .../python-statsmodels_0.8.0~rc1+git59-gef47cd9-5_all.deb ... Unpacking python-statsmodels (0.8.0~rc1+git59-gef47cd9-5) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../python3-scipy_0.18.1-2_amd64.deb ... Unpacking python3-scipy (0.18.1-2) ... Selecting previously unselected package r-base-html. Preparing to unpack .../r-base-html_3.3.3-1_all.deb ... Unpacking r-base-html (3.3.3-1) ... Preparing to unpack .../rate4site_3.0.0-4+b1_amd64.deb ... Unpacking rate4site (3.0.0-4+b1) over (3.0.0-1) ... Preparing to unpack .../science-biology_1.7_all.deb ... Unpacking science-biology (1.7) over (1.4) ... Preparing to unpack .../science-tasks_1.7_all.deb ... Unpacking science-tasks (1.7) over (1.4) ... Preparing to unpack .../science-config_1.7_all.deb ... Unpacking science-config (1.7) over (1.4) ... Preparing to unpack .../vcftools_0.1.14+dfsg-4+deb9u1_amd64.deb ... Unpacking vcftools (0.1.14+dfsg-4+deb9u1) over (0.1.12+dfsg-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for man-db (2.7.6.1-2) ... Processing triggers for mime-support (3.60) ... Processing triggers for hicolor-icon-theme (0.15-1) ... Processing triggers for libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Processing triggers for systemd (232-25+deb9u12) ... Setting up perl-modules-5.24 (5.24.1-3+deb9u7) ... Setting up libperl5.24:amd64 (5.24.1-3+deb9u7) ... Setting up perl (5.24.1-3+deb9u7) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Setting up libnumber-format-perl (1.75-1) ... Setting up libstatistics-basic-perl (1.6611-1) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up libwebp6:amd64 (0.5.2-1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libgd3:amd64 (2.2.4-2+deb9u5) ... Setting up libgd-perl (2.53-3) ... Setting up libparams-validate-perl (1.26-1) ... Setting up liblist-someutils-perl (0.53-1) ... Setting up liblist-utilsby-perl (0.10-1) ... Setting up libscalar-list-utils-perl (1:1.47-1) ... Setting up liblist-allutils-perl (0.12-1) ... Setting up libipc-system-simple-perl (1.25-3) ... Setting up libfile-basedir-perl (0.07-1) ... Setting up libclone-perl (0.38-2+b1) ... Setting up circos (0.69.4+dfsg-1) ... Installing new version of config file /etc/circos/colors.brewer.conf ... Installing new version of config file /etc/circos/colors.ucsc.conf ... Installing new version of config file /etc/circos/fonts.conf ... Installing new version of config file /etc/circos/housekeeping.conf ... Installing new version of config file /etc/circos/image.generic.conf ... Installing new version of config file /etc/circos/patterns.conf ... Installing new version of config file /etc/circos/tracks/heatmap.conf ... Installing new version of config file /etc/circos/tracks/highlight.conf ... Installing new version of config file /etc/circos/tracks/histogram.conf ... Setting up libcpan-meta-perl (2.150010-1) ... Setting up perl-doc (5.24.1-3+deb9u7) ... Setting up libclass-xsaccessor-perl (1.19-2+b7) ... Setting up libcommon-sense-perl (3.74-2) ... Setting up libqtcore4:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt4-xml:amd64 (4:4.8.7+dfsg-11) ... Setting up libqtgui4:amd64 (4:4.8.7+dfsg-11) ... Setting up clustalx (2.1+lgpl-5) ... Setting up libboost-date-time1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libboost-serialization1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libgsl2:amd64 (2.3+dfsg-1) ... Setting up proftmb (1.1.12-6+b1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libopenblas-base (0.2.19-3) ... update-alternatives: using /usr/lib/openblas-base/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/openblas-base/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libtamuanova-0.2 (0.2-4) ... Setting up libmath-tamuanova-perl (1.0.2-2+b4) ... Setting up altree (1.3.1-4+b2) ... Setting up libglew2.0:amd64 (2.0.0-3+b1) ... Setting up libboost-chrono1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libpython2.7:amd64 (2.7.13-2+deb9u3) ... Setting up libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Setting up libqtdbus4:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt4-network:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt4-sql:amd64 (4:4.8.7+dfsg-11) ... Setting up libball1.4 (1.4.3~beta1-3) ... Setting up libqt4-opengl:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt4-test:amd64 (4:4.8.7+dfsg-11) ... Setting up libgstreamer1.0-0:amd64 (1.10.4-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libgstreamer-plugins-base1.0-0:amd64 (1.10.4-1+deb9u1) ... Setting up libqt4-xmlpatterns:amd64 (4:4.8.7+dfsg-11) ... Setting up libqtwebkit4:amd64 (2.3.4.dfsg-9.1) ... Setting up libballview1.4 (1.4.3~beta1-3) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up python (2.7.13-2) ... Setting up python-ball (1.4.3~beta1-3) ... Setting up python-ballview (1.4.3~beta1-3) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up libibverbs1 (1.2.1-2) ... Setting up librdmacm1 (1.1.0-2) ... Setting up libfabric1 (1.4.0-1) ... Setting up libopenmpi2:amd64 (2.0.2-2) ... Setting up ray (2.3.1-4+b1) ... Setting up openmpi-common (2.0.2-2) ... Setting up openmpi-bin (2.0.2-2) ... Installing new version of config file /etc/openmpi/openmpi-default-hostfile ... Installing new version of config file /etc/openmpi/openmpi-mca-params.conf ... Installing new version of config file /etc/openmpi/openmpi-totalview.tcl ... Setting up zalign (0.9.1-2+b3) ... Setting up libboost-mpi1.62.0 (1.62.0+dfsg-4) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up prime-phylo (1.0.11-4+b3) ... Setting up ampliconnoise (1.29-6) ... Setting up libavahi-client3:amd64 (0.6.32-2) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libgc1c2:amd64 (1:7.4.2-8) ... Setting up libobjc4:amd64 (6.3.0-18+deb9u1) ... Setting up libgnustep-base1.24 (1.24.9-3.1+deb9u1) ... Setting up adun-core (0.81-9+b2) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libaspell15:amd64 (0.60.7~20110707-3+b2) ... Setting up libgif7:amd64 (5.1.4-0.4) ... Setting up libopenjp2-7:amd64 (2.1.2-1.1+deb9u4) ... Setting up imagemagick-6-common (8:6.9.7.4+dfsg-11+deb9u8) ... Installing new version of config file /etc/ImageMagick-6/delegates.xml ... Installing new version of config file /etc/ImageMagick-6/policy.xml ... Setting up libmagickcore-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Setting up libgnustep-gui0.25 (0.25.0-4+b1) ... Setting up gnustep-back-common (0.25.0-2) ... Generating GNUstep nfont descriptions... done. Setting up gnustep-back0.25-cairo (0.25.0-2) ... update-alternatives: using /usr/lib/GNUstep/Bundles/libgnustep-cairo-025.bundle to provide /usr/lib/GNUstep/Bundles/libgnustep-back-025.bundle (gnustep-back-025) in auto mode Setting up gnustep-back0.25 (0.25.0-2) ... Setting up libcups2:amd64 (2.2.1-8+deb9u6) ... Setting up gnustep-gui-runtime (0.25.0-4+b1) ... Setting up libpgtypes3:amd64 (9.6.17-0+deb9u1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libpq5:amd64 (9.6.17-0+deb9u1) ... Setting up libecpg6:amd64 (9.6.17-0+deb9u1) ... Setting up libmariadbclient18:amd64 (10.1.45-0+deb9u1) ... Setting up libperformance0.5 (0.5.0-1) ... Setting up libsqlclient1.7 (1.7.3-2.1) ... Setting up libgnustep-dl2-0d (0.12.0-15.1) ... Setting up libsteptalk0 (0.10.0-6+b3) ... Setting up steptalk (0.10.0-6+b3) ... Setting up adun.app (0.81-9+b2) ... Setting up imagemagick-common (8:6.9.7.4+dfsg-11+deb9u8) ... Setting up clustalo (1.2.4-1) ... Setting up theseus (3.3.0-5+b1) ... Setting up clonalframe (1.2-5) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up python-htseq (0.6.1p1-4) ... Setting up python-scipy (0.18.1-2) ... Setting up libboost-math1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libboost-program-options1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libboost-random1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libboost-timer1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up liblog4cpp5v5 (1.1.1-3) ... Setting up libzeep3.0v5 (3.0.2-4+b2) ... Setting up mrs (6.0.5+dfsg-2+b2) ... Installing new version of config file /etc/mrs/mrs-config.xml ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libaprutil1:amd64 (1.5.4-3) ... Setting up apache2-utils (2.4.25-3+deb9u9) ... Setting up apache2-data (2.4.25-3+deb9u9) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Setting up libaprutil1-ldap:amd64 (1.5.4-3) ... Setting up apache2-bin (2.4.25-3+deb9u9) ... Setting up apache2 (2.4.25-3+deb9u9) ... Installing new version of config file /etc/apache2/apache2.conf ... Installing new version of config file /etc/apache2/conf-available/security.conf ... Installing new version of config file /etc/apache2/envvars ... Installing new version of config file /etc/apache2/mods-available/proxy_html.load ... Installing new version of config file /etc/apache2/mods-available/userdir.conf ... Installing new version of config file /etc/apache2/sites-available/default-ssl.conf ... Installing new version of config file /etc/cron.daily/apache2 ... Installing new version of config file /etc/init.d/apache2 ... Created symlink /etc/systemd/system/multi-user.target.wants/apache2.service → /lib/systemd/system/apache2.service. Created symlink /etc/systemd/system/multi-user.target.wants/apache-htcacheclean.service → /lib/systemd/system/apache-htcacheclean.service. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Removing obsolete conffile /etc/bash_completion.d/apache2 ... insserv: warning: current start runlevel(s) (empty) of script `apache-htcacheclean' overrides LSB defaults (2 3 4 5). insserv: warning: current stop runlevel(s) (0 1 2 3 4 5 6) of script `apache-htcacheclean' overrides LSB defaults (0 1 6). Setting up libapache2-mod-perl2 (2.0.10-2+deb9u1) ... apache2_invoke perl: already enabled Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libfcgi-perl (0.78-2) ... Setting up libdbi-perl (1.636-1+b1) ... Setting up libdbd-mysql-perl (4.041-2) ... Setting up libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcrypt-random-seed-perl (0.03-1) ... Setting up libmath-random-isaac-perl (1.003-1) ... Setting up libbytes-random-secure-perl (0.28-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libcrypt-ssleay-perl (0.73.04-2) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libyaml-libyaml-perl (0.63-2) ... Setting up libsub-name-perl (0.21-1) ... Setting up libindirect-perl (0.37-1+b1) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up perl-tk (1:804.033-1+b3) ... Setting up libdbd-pg-perl (3.5.3-1+b2) ... Setting up libbit-vector-perl (7.4-1+b2) ... Setting up libdate-calc-perl (6.4-1) ... Setting up libdate-calc-xs-perl (6.4-1+b2) ... Setting up sqlite3 (3.16.2-5+deb9u1) ... Setting up libdbd-sqlite3-perl (1.54-1) ... Setting up libguard-perl (1.023-1+b2) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Setting up libstaden-read11:amd64 (1.14.8-2) ... Setting up libbio-scf-perl (1.03-3) ... Setting up libparams-classify-perl (0.013-6+b1) ... Setting up libparams-util-perl (1.07-3+b1) ... Setting up libpadwalker-perl (2.2-2+b1) ... Setting up libstring-approx-perl (3.27-1+b4) ... Setting up libconvert-binary-c-perl (0.78-1+b1) ... Setting up libb-hooks-op-check-perl (0.19-3+b1) ... Setting up liblexical-sealrequirehints-perl (0.010-1+b1) ... Setting up libmultidimensional-perl (0.012-1+b1) ... Setting up libtext-charwidth-perl (0.04-7+b5) ... Setting up libbareword-filehandles-perl (0.004-1+b1) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libace-perl (1.92-4+b1) ... Setting up libtext-iconv-perl (1.7-5+b4) ... Setting up libxml-libxslt-perl (1.95-1+b1) ... Setting up libbsd-resource-perl (1.2910-1+b1) ... Setting up libalgorithm-diff-xs-perl (0.04-4+b2) ... Setting up libfile-fcntllock-perl (0.22-3+b2) ... Setting up libterm-readkey-perl (2.37-1) ... Setting up libdevel-caller-perl (2.06-1+b4) ... Setting up libunicode-map-perl (0.112-11+b3) ... Setting up libtype-tiny-xs-perl (0.012-1+b2) ... Setting up dbus (1.10.32-0+deb9u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Removing obsolete conffile /etc/dbus-1/session.conf ... Removing obsolete conffile /etc/dbus-1/system.conf ... Setting up libnet-dbus-perl (1.1.0-4+b1) ... Setting up libtext-soundex-perl (3.4-1+b4) ... Setting up libtypes-serialiser-perl (1.0-1) ... Setting up libjson-xs-perl (3.030-1) ... Setting up libev-perl (4.22-1+b1) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Setting up libossp-uuid-perl (1.6.2-1.5+b4) ... Setting up libasync-interrupt-perl (1.21-1+b2) ... Setting up libperlio-gzip-perl (0.19-1+b2) ... Setting up libio-pty-perl (1:1.08-1.1+b2) ... Setting up libanyevent-perl (7.130-2) ... Setting up libipc-sharelite-perl (0.17-4) ... Setting up libmath-random-mt-perl (1.17-1+b2) ... Setting up libclass-c3-xs-perl (0.14-1+b1) ... Setting up libdevel-lexalias-perl (0.05-1+b4) ... Setting up liblist-moreutils-perl (0.416-1+b1) ... Setting up libai-fann-perl (0.10-3+b2) ... Setting up libqt4-svg:amd64 (4:4.8.7+dfsg-11) ... Setting up libmnl0:amd64 (1.0.4-2) ... Setting up iproute2 (4.9.0-1+deb9u1) ... Installing new version of config file /etc/iproute2/rt_dsfield ... Installing new version of config file /etc/iproute2/rt_protos ... Setting up ifupdown (0.8.19) ... Installing new version of config file /etc/init.d/networking ... Created symlink /etc/systemd/system/multi-user.target.wants/networking.service → /lib/systemd/system/networking.service. Created symlink /etc/systemd/system/network-online.target.wants/networking.service → /lib/systemd/system/networking.service. Setting up udev (232-25+deb9u12) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udevmonitor.conf ... Installing new version of config file /etc/udev/udev.conf ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. Removing obsolete conffile /etc/init.d/udev-finish ... Removing obsolete conffile /etc/init/udev-finish.conf ... Removing obsolete conffile /etc/init/udev-fallback-graphics.conf ... Removing obsolete conffile /etc/modprobe.d/fbdev-blacklist.conf ... Setting up libpam-systemd:amd64 (232-25+deb9u12) ... Setting up libqt4-sql-mysql:amd64 (4:4.8.7+dfsg-11) ... Setting up libpython2.7-dev:amd64 (2.7.13-2+deb9u3) ... Setting up python2.7-dev (2.7.13-2+deb9u3) ... Setting up libopus0:amd64 (1.2~alpha2-1) ... Setting up gstreamer1.0-plugins-base:amd64 (1.10.4-1+deb9u1) ... Setting up python-all (2.7.13-2) ... Setting up libpython-dev:amd64 (2.7.13-2) ... Setting up libpython-all-dev:amd64 (2.7.13-2) ... Setting up python-dev (2.7.13-2) ... Setting up python-all-dev (2.7.13-2) ... Setting up libgmpxx4ldbl:amd64 (2:6.1.2+dfsg-1) ... Setting up libgmp-dev:amd64 (2:6.1.2+dfsg-1) ... Setting up aspell (0.60.7~20110707-3+b2) ... Setting up libcupsimage2:amd64 (2.2.1-8+deb9u6) ... Setting up libmotif-common (2.3.4-13) ... Setting up libxm4:amd64 (2.3.4-13) ... Setting up libncbi6:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libvibrant6b:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Setting up ncbi-tools-x11 (6.1.20170106+dfsg1-0+deb9u1) ... update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode Setting up ncbi-blast+-legacy (2.6.0-1) ... Setting up blast2 (1:2.6.0-1) ... Setting up ncbi-tools-bin (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libpcre16-3:amd64 (2:8.39-3) ... Setting up libpcre32-3:amd64 (2:8.39-3) ... Setting up libpcrecpp0v5:amd64 (2:8.39-3) ... Setting up libpcre3-dev:amd64 (2:8.39-3) ... Setting up libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Setting up python3.5 (3.5.3-1+deb9u1) ... Setting up libpython3-stdlib:amd64 (3.5.3-1) ... Setting up python3 (3.5.3-1) ... Setting up apt (1.4.10) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Created symlink /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer → /lib/systemd/system/apt-daily-upgrade.timer. Created symlink /etc/systemd/system/timers.target.wants/apt-daily.timer → /lib/systemd/system/apt-daily.timer. Removing obsolete conffile /etc/cron.daily/apt ... Setting up libkpathsea6:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Setting up libptexenc1:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Setting up tex-common (6.06) ... Warning: Old configuration style found in /etc/texmf/fmt.d Warning: For now these files have been included, Warning: but expect inconsistencies. Warning: These packages should be rebuild with tex-common. Warning: Please see /usr/share/doc/tex-common/NEWS.Debian.gz Warning: found file: /etc/texmf/fmt.d/10texlive-math-extra.cnf update-language: texlive-base not installed and configured, doing nothing! Removing obsolete conffile /etc/texmf/fmt.d/00tex.cnf ... Removing obsolete conffile /etc/texmf/hyphen.d/00tex.cnf ... Setting up libtexlua52:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Setting up libtexluajit2:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Setting up t1utils (1.39-2) ... Setting up libgs9-common (9.26a~dfsg-0+deb9u6) ... Setting up libgs9:amd64 (9.26a~dfsg-0+deb9u6) ... Setting up libharfbuzz-icu0:amd64 (1.4.2-1) ... Setting up libpoppler64:amd64 (0.48.0-2+deb9u2) ... Setting up texlive-binaries (2016.20160513.41080.dfsg-2+deb9u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up fonts-lmodern (2.004.5-3) ... Setting up preview-latex-style (11.90-1) ... Setting up fonts-croscore (20161116-1) ... Setting up fonts-noto-hinted (20161116-1) ... Setting up fonts-roboto-hinted (2:0~20160106-2) ... Setting up fonts-sil-gentiumplus (5.000-1) ... Setting up fonts-sil-gentiumplus-compact (5.000-2) ... Setting up ghostscript (9.26a~dfsg-0+deb9u6) ... Setting up lmodern (2.004.5-3) ... Setting up libdouble-conversion1:amd64 (2.0.1-4) ... Setting up libqt5core5a:amd64 (5.7.1+dfsg-3+deb9u2) ... Setting up libwayland-server0:amd64 (1.12.0-1+deb9u1) ... Setting up libgbm1:amd64 (13.0.6-1+b2) ... Setting up libxcb-xfixes0:amd64 (1.12-1) ... Setting up libegl1-mesa:amd64 (13.0.6-1+b2) ... Setting up libevdev2:amd64 (1.5.6+dfsg-1) ... Setting up libmtdev1:amd64 (1.1.5-1+b1) ... Setting up libwacom-common (0.22-1) ... Setting up libwacom2:amd64 (0.22-1+b1) ... Setting up libinput-bin (1.6.3-1) ... Setting up libinput10:amd64 (1.6.3-1) ... Setting up libqt5dbus5:amd64 (5.7.1+dfsg-3+deb9u2) ... Setting up libproxy1v5:amd64 (0.4.14-2) ... Setting up glib-networking-common (2.50.0-1+deb9u1) ... Setting up glib-networking-services (2.50.0-1+deb9u1) ... Setting up glib-networking:amd64 (2.50.0-1+deb9u1) ... Setting up libqt5network5:amd64 (5.7.1+dfsg-3+deb9u2) ... Setting up libxcb-icccm4:amd64 (0.4.1-1) ... Setting up libxcb-util0:amd64 (0.3.8-3+b2) ... Setting up libxcb-image0:amd64 (0.4.0-1+b2) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-randr0:amd64 (1.12-1) ... Setting up libxcb-render-util0:amd64 (0.3.9-1) ... Setting up libxcb-xinerama0:amd64 (1.12-1) ... Setting up libxcb-xkb1:amd64 (1.12-1) ... Setting up libxkbcommon-x11-0:amd64 (0.7.1-2~deb9u1) ... Setting up libqt5gui5:amd64 (5.7.1+dfsg-3+deb9u2) ... Setting up libqt5widgets5:amd64 (5.7.1+dfsg-3+deb9u2) ... Setting up libqt5printsupport5:amd64 (5.7.1+dfsg-3+deb9u2) ... Setting up libqt5svg5:amd64 (5.7.1~20161021-2+b2) ... Setting up libgdk-pixbuf2.0-common (2.36.5-2+deb9u2) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Setting up libatspi2.0-0:amd64 (2.22.0-6+deb9u1) ... Setting up libatk-bridge2.0-0:amd64 (2.22.0-2) ... Setting up libepoxy0:amd64 (1.3.1-2) ... Setting up libwayland-egl1-mesa:amd64 (13.0.6-1+b2) ... Setting up gtk-update-icon-cache (3.22.11-1) ... Setting up adwaita-icon-theme (3.22.0-1+deb9u1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk-3-0:amd64 (3.22.11-1) ... Setting up libgtk-3-bin (3.22.11-1) ... Setting up libgtk2.0-0:amd64 (2.24.31-2) ... Setting up libgtk2.0-bin (2.24.31-2) ... Setting up libwxbase3.0-0v5:amd64 (3.0.2+dfsg-4) ... Setting up libwxgtk3.0-0v5:amd64 (3.0.2+dfsg-4) ... Setting up python-wxgtk3.0 (3.0.2.0+dfsg-4) ... update-alternatives: using /usr/lib/wx/python/wx3.0.pth to provide /usr/lib/wx/python/wx.pth (wx.pth) in auto mode Setting up treeviewx (0.5.1+20100823-4) ... Setting up libtinyxml2.6.2v5:amd64 (2.6.2-4) ... Setting up gentle (1.9+cvs20100605+dfsg1-5) ... Setting up gnuplot-data (5.0.5+dfsg1-6+deb9u1) ... Setting up gnuplot-qt (5.0.5+dfsg1-6+deb9u1) ... update-alternatives: warning: alternative /usr/bin/gnuplot4-qt (part of link group gnuplot4) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/gnuplot4 is dangling; it will be updated with best choice update-alternatives: warning: alternative /usr/bin/gnuplot4-qt (part of link group gnuplot) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/gnuplot is dangling; it will be updated with best choice update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up libasprintf0v5:amd64 (0.19.8.1-2+deb9u1) ... Setting up libasprintf-dev:amd64 (0.19.8.1-2+deb9u1) ... Setting up libgflags2v5 (2.1.2-4) ... Setting up libgoogle-glog0v5 (0.3.4-2) ... Setting up libcassie1v5 (1.0.5-1+b1) ... Setting up cassiopee (1.0.5-1+b1) ... Setting up libcommons-net-java (3.5-1) ... Setting up ipig (0.0.r5-2) ... Setting up libfreecontact0v5:amd64 (1.0.21-5) ... Setting up libxerces-c3.1:amd64 (3.1.4+debian-2+deb9u1) ... Setting up freecontact (1.0.21-5) ... Setting up libgtextutils0v5:amd64 (0.7-4) ... Setting up fastx-toolkit (0.0.14-3) ... Setting up beignet-opencl-icd:amd64 (1.3.0-4) ... Setting up libhmsbeagle1v5 (2.1.2+20160831-5) ... Setting up mrbayes (3.2.6+dfsg-1+b4) ... Setting up libreadline-dev:amd64 (7.0-3) ... Setting up librelion-1.4-1:amd64 (1.4+dfsg-2+b2) ... Setting up relion-bin (1.4+dfsg-2+b2) ... Setting up mariadb-common (10.1.45-0+deb9u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libaio1:amd64 (0.3.110-3) ... Setting up libreadline5:amd64 (5.2+dfsg-3+b1) ... Setting up mariadb-client-core-10.1 (10.1.45-0+deb9u1) ... Setting up libjemalloc1 (3.6.0-9.1) ... Setting up mariadb-client-10.1 (10.1.45-0+deb9u1) ... Setting up default-mysql-client (1.0.2) ... Setting up mysql-client (5.5.9999+default) ... Setting up openjdk-8-jre-headless:amd64 (8u252-b09-1~deb9u1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up default-jre-headless (2:1.8-58+deb9u1) ... Setting up libatk-wrapper-java-jni:amd64 (0.33.3-13+deb9u1) ... Setting up libpulse0:amd64 (10.0-1+deb9u1) ... Installing new version of config file /etc/pulse/client.conf ... Setting up openjdk-8-jre:amd64 (8u252-b09-1~deb9u1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (2:1.8-58+deb9u1) ... Setting up cron (3.0pl1-128+deb9u1) ... Adding group `crontab' (GID 162) ... Done. Created symlink /etc/systemd/system/multi-user.target.wants/cron.service → /lib/systemd/system/cron.service. update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libmagickwand-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Setting up libgphoto2-port12:amd64 (2.5.12-1) ... Setting up libgphoto2-6:amd64 (2.5.12-1) ... Setting up libsane-common (1.0.25-4.1) ... Installing new version of config file /etc/sane.d/canon_dr.conf ... Installing new version of config file /etc/sane.d/dll.conf ... Installing new version of config file /etc/sane.d/epjitsu.conf ... Installing new version of config file /etc/sane.d/epson2.conf ... Installing new version of config file /etc/sane.d/fujitsu.conf ... Installing new version of config file /etc/sane.d/genesys.conf ... Installing new version of config file /etc/sane.d/gt68xx.conf ... Setting up libsane:amd64 (1.0.25-4.1) ... Setting up mira-rfam-12s-rrna (4.9.6-2) ... Will install rfam_rrna-21-12 with kmer size 21 as MIRA default rRNA filter in /usr/bin/../share/mira/mhs Installing. This can take a minute or two, please be patient. Done. MIRA can now use the functionality to filter for rRNA during assemblies. MIRABAIT can now use the '-j rrna' option. Setting up libjs-jquery-metadata (11-3) ... Setting up libjs-jquery-tablesorter (11-3) ... Setting up libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-1) ... Setting up libisc-export160 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Setting up libdns-export162 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Setting up isc-dhcp-client (4.3.5-3+deb9u1) ... Installing new version of config file /etc/dhcp/dhclient-exit-hooks.d/rfc3442-classless-routes ... Installing new version of config file /etc/dhcp/dhclient.conf ... Setting up isc-dhcp-common (4.3.5-3+deb9u1) ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Setting up file (1:5.30-1+deb9u3) ... Setting up openssh-client (1:7.4p1-10+deb9u7) ... Installing new version of config file /etc/ssh/moduli ... Installing new version of config file /etc/ssh/ssh_config ... Setting up abyss (2.0.2-2) ... Setting up adapterremoval (2.2.0-1) ... Setting up libjs-jquery-datatables (1.10.13+dfsg-2) ... Setting up libjs-mootools (1.4.5~debian1-2.1) ... Setting up aegean (0.15.2+dfsg-1) ... Setting up aevol (4.4-1+b4) ... Setting up alter-sequence-alignment (1.3.3+dfsg-1) ... Setting up amap-align (2.2-6) ... Setting up libdivsufsort3:amd64 (2.0.1-2) ... Setting up andi (0.10-2) ... Setting up libprotobuf10:amd64 (3.0.0-9) ... Setting up libanfo0 (0.98-5) ... Setting up anfo (0.98-5) ... Setting up python3-dendropy (4.2.0+dfsg-1) ... Setting up mummer (3.23+dfsg-2) ... Setting up python3-pymummer (0.10.1-1) ... Setting up libhts1:amd64 (1.3.2-2) ... Setting up python3-pysam (0.10.0+ds-2) ... Setting up libfml0 (0.1-2+b1) ... Setting up libminimap0 (0.2-3+b1) ... Setting up libatomic1:amd64 (6.3.0-18+deb9u1) ... Setting up libtbb2:amd64 (4.3~20150611-2) ... Setting up bowtie2 (2.3.0-2) ... Setting up cd-hit (4.6.6-2) ... Setting up libcapnp-0.5.3 (0.5.3-2) ... Setting up mash (1.1.1-2) ... Setting up ariba (2.6.1+ds-1) ... Setting up art-nextgen-simulation-tools (20160605+dfsg-2) ... Setting up libhpdf-2.2.1 (2.2.1-1.1+b1) ... Setting up emboss-lib (6.6.0+dfsg-6) ... Setting up emboss-data (6.6.0+dfsg-6) ... Setting up emboss (6.6.0+dfsg-6) ... Setting up jemboss (6.6.0+dfsg-6) ... Setting up libbsf-java (1:2.4.0-5) ... Setting up libjaxp1.3-java (1.3.05-2) ... Setting up libxalan2-java (2.7.1-9) ... Setting up libxmlgraphics-commons-java (2.1-2) ... Setting up libbatik-java (1.8-4+deb9u2) ... Setting up libcommons-lang3-java (3.5-1) ... Setting up libngs-sdk1 (1.3.0-2) ... Setting up libngs-sdk-dev (1.3.0-2) ... Setting up libngs-java (1.3.0-2) ... Setting up libsnappy1v5:amd64 (1.1.3-3) ... Setting up libsnappy-jni (1.1.2.6-1) ... Setting up libsnappy-java (1.1.2.6-1) ... Setting up libxz-java (1.6-1) ... Setting up libhtsjdk-java (2.8.1+dfsg-1) ... Setting up libibatis-java (2.3.4.726-6) ... Setting up libj2ssh-java (0.2.9-4) ... Setting up libatinject-jsr330-api-java (1.0+ds1-2) ... Setting up libjsr305-java (0.1~+svn49-10) ... Setting up libguava-java (19.0-1) ... Setting up libpicard-java (2.8.1+dfsg-1) ... Setting up picard-tools (2.8.1+dfsg-1) ... Setting up libpostgresql-jdbc-java (9.4.1212-1) ... Setting up artemis (16.0.17+dfsg-1) ... Setting up artfastqgenerator (0.0.20150519-2) ... Setting up at-spi2-core (2.22.0-6+deb9u1) ... Installing new version of config file /etc/X11/Xsession.d/90qt-a11y ... Installing new version of config file /etc/xdg/autostart/at-spi-dbus-bus.desktop ... Removing obsolete conffile /etc/at-spi2/accessibility.conf ... Setting up leaff (0~20150903+r2013-3) ... Setting up meryl (0~20150903+r2013-3) ... Setting up atac (0~20150903+r2013-3) ... Setting up libbamtools2.4.0 (2.4.1+dfsg-1) ... Setting up augustus-data (3.2.3+dfsg-1) ... Setting up augustus (3.2.3+dfsg-1) ... Setting up m4 (1.4.18-1) ... Setting up autoconf (2.69-10) ... Setting up autodock (4.2.6-3+b1) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up autogrid (4.2.6-3+b1) ... Setting up automake (1:1.15-6) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libqes0 (0.2.7-1) ... Setting up axe-demultiplexer (0.3.2+dfsg1-1) ... Setting up ballview (1.4.3~beta1-3) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up bamtools (2.4.1+dfsg-1) ... Setting up hmmer (3.1b2+dfsg-5) ... Setting up barrnap (0.7+dfsg-2) ... Setting up bc (1.06.95-9+b3) ... Setting up samtools (1.3.1-3) ... Setting up bcftools (1.3.1-1+b1) ... Setting up beagle (4.1~160727-86a+dfsg-1) ... Setting up libhmsbeagle-java (2.1.2+20160831-5) ... Setting up libconcurrent-java (1.3.4-4) ... Setting up libcolt-free-java (1.2.0+dfsg-4) ... Setting up libcommons-math-java (2.2-6) ... Setting up libitext1-java (1.4-6) ... Setting up libmpj-java (0.44+dfsg-3) ... Setting up libmtj-java (0.9.14+dfsg-4) ... Setting up libnucleotidelikelihoodcore0 (1.8.4+dfsg.1-1) ... Setting up f2j (0.8.1+dfsg-2) ... Setting up libf2j-java (0.8.1+dfsg-2) ... Setting up libjlapack-java (0.8~dfsg-3) ... Setting up libnetlib-java (0.9.3-3) ... Setting up beast-mcmc (1.8.4+dfsg.1-1) ... Setting up beast2-mcmc (2.4.4+dfsg-1) ... Setting up bedtools (2.26.0+dfsg-3) ... Setting up berkeley-express (1.5.1-3+b1) ... Setting up bio-eagle (2.3-3) ... Setting up bio-rainbow (2.0.4-1+b1) ... Setting up libservlet3.1-java (8.5.54-0+deb9u1) ... Setting up libhsqldb-java (2.3.4-1) ... Setting up libjgoodies-forms-java (1.9.0-3) ... Setting up libsaxonhe-java (9.5.1.1+dfsg-2) ... Setting up biomaj (1.2.3-11) ... Setting up libbio-perl-run-perl (1.7.1-3) ... Setting up bioperl-run (1.7.1-3) ... Setting up libaec0:amd64 (0.3.2-1) ... Setting up libsz2:amd64 (0.3.2-1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Setting up libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Setting up libpbbam:amd64 (0.7.4+ds-1) ... Setting up libpbdata:amd64 (0~20161219-1) ... Setting up libpbihdf:amd64 (0~20161219-1) ... Setting up libblasr:amd64 (0~20161219-1) ... Setting up libpbseq (0~20161219-1) ... Setting up blasr (5.3+0-1) ... Setting up libjargs-java (1.0.0-4) ... Setting up cgview (0.0.20100111-2) ... Setting up libswing-layout-java (1.0.4-4) ... Setting up brig (0.95+dfsg-1) ... Setting up libisl15:amd64 (0.18-1) ... Setting up cpp-6 (6.3.0-18+deb9u1) ... Setting up cpp (4:6.3.0-4) ... Setting up libcc1-0:amd64 (6.3.0-18+deb9u1) ... Setting up libitm1:amd64 (6.3.0-18+deb9u1) ... Setting up libasan3:amd64 (6.3.0-18+deb9u1) ... Setting up liblsan0:amd64 (6.3.0-18+deb9u1) ... Setting up libtsan0:amd64 (6.3.0-18+deb9u1) ... Setting up libubsan0:amd64 (6.3.0-18+deb9u1) ... Setting up libcilkrts5:amd64 (6.3.0-18+deb9u1) ... Setting up libmpx2:amd64 (6.3.0-18+deb9u1) ... Setting up libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up gcc-6 (6.3.0-18+deb9u1) ... Setting up gcc (4:6.3.0-4) ... Setting up libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up g++-6 (6.3.0-18+deb9u1) ... Setting up g++ (4:6.3.0-4) ... Setting up build-essential (12.3) ... Setting up cdbfasta (0.99-20100722-3) ... Setting up python3-jdcal (1.0-1.2~deb9u1) ... Setting up python3-lxml (3.7.1-1) ... Setting up python3-openpyxl (2.3.0-3) ... Setting up libhat-trie0:amd64 (0.0~git25f9e946-2) ... Setting up libnlopt0:amd64 (2.4.2+dfsg-2+b2) ... Setting up libssw0:amd64 (1.1-1+b1) ... Setting up python-joblib (0.10.3+git55-g660fe5d-1) ... Setting up spades (3.9.1+dfsg-1) ... Setting up circlator (1.4.1-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up codonw (1.4.4-3+b1) ... Setting up colord (1.3.3-2) ... Setting up libgkarrays1 (2.1.0+dfsg-1) ... Setting up libgzstream0 (1.5+dfsg-2) ... Setting up libjellyfish-2.0-2 (2.2.6-1+b1) ... Setting up jellyfish (2.2.6-1+b1) ... Setting up crac (2.5.0+dfsg-1) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up curl (7.52.1-5+deb9u10) ... Setting up python3-xopen (0.1.1-1) ... Setting up python3-cutadapt (1.12-2) ... Setting up cutadapt (1.12-2) ... Setting up daligner (1.0+20161119-1) ... Setting up dascrubber (0~20160601-2) ... Setting up dawg (1.2-1+b1) ... Setting up dazzdb (1.0+20161112-2) ... Setting up libmatthew-debug-java (0.8-1) ... Setting up libunixsocket-java (0.8-1) ... Setting up libdbus-java (2.8-6) ... Setting up dbus-java-bin (2.8-6) ... Setting up libtool (2.4.6-2) ... Setting up libarchive-zip-perl (1.59-1+deb9u1) ... Setting up libfile-stripnondeterminism-perl (0.034-1) ... Setting up dindel (1.01+dfsg-4+b1) ... Setting up dirmngr (2.1.18-8~deb9u4) ... Setting up discosnp (1.2.6-1+b2) ... Setting up dnaclust (3-4+b2) ... Setting up dssp (2.2.1-3+b2) ... Setting up dwgsim (0.1.11-3+b1) ... Setting up r-base-core (3.3.3-1) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/ldpaths ... Installing new version of config file /etc/R/repositories ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-getopt (1.20.0-2) ... Setting up r-cran-chron (2.3-49-1) ... Setting up r-cran-lattice (0.20-34-1) ... Setting up r-cran-cluster (2.0.5-1) ... Setting up r-cran-matrix (1.2-7.1-1) ... Setting up r-cran-survival (2.40-1-1) ... Setting up r-cran-formula (1.2-1-1) ... Setting up r-cran-rpart (4.1-10-2) ... Setting up r-cran-rcolorbrewer (1.1-2-1) ... Setting up r-cran-latticeextra (0.6-28-2) ... Setting up r-cran-acepack (1.4.1-1) ... Setting up r-cran-digest (0.6.11-1) ... Setting up r-cran-gtable (0.2.0-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-littler (0.3.1-1) ... Setting up littler (0.3.1-1) ... Setting up r-cran-pkgkitten (0.1.4-1) ... Setting up r-cran-rcpp (0.12.9-1) ... Setting up r-cran-plyr (1.8.4-1) ... Setting up r-cran-stringi (1.1.2-1) ... Setting up r-cran-magrittr (1.5-3) ... Setting up r-cran-stringr (1.1.0-1) ... Setting up r-cran-reshape2 (1.4.2-1) ... Setting up r-cran-colorspace (1.3-2-1) ... Setting up r-cran-munsell (0.4.3-1) ... Setting up r-cran-scales (0.4.1-1) ... Setting up r-cran-assertthat (0.1-1) ... Setting up r-cran-lazyeval (0.2.0-1) ... Setting up r-cran-tibble (1.2-1) ... Setting up r-cran-ggplot2 (2.2.1-2) ... Setting up r-cran-gridextra (2.2.1-1) ... Setting up r-cran-data.table (1.10.0-1) ... Setting up r-cran-htmltools (0.3.5-2) ... Setting up r-cran-evaluate (0.10-1) ... Setting up libjs-highlight.js (8.2+ds-5) ... Setting up r-cran-highr (0.6-1) ... Setting up fonts-mathjax (2.7.0-2) ... Setting up libjs-mathjax (2.7.0-2) ... Setting up r-cran-mime (0.5-1) ... Setting up r-cran-markdown (0.7.7-1) ... Setting up r-cran-yaml (2.1.14-1) ... Setting up r-cran-knitr (1.15.1-1) ... Setting up r-cran-viridis (0.3.4-1) ... Setting up r-cran-htmltable (1.7-2) ... Setting up r-cran-base64enc (0.1-3-1) ... Setting up r-cran-hmisc (4.0-2-1) ... Setting up ea-utils (1.1.2+dfsg-4) ... Setting up python3-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Setting up python3-reportlab (3.3.0-2+deb9u1) ... Setting up ecopcr (0.5.0+dfsg-1) ... Setting up libtmglib3 (3.7.0-2) ... Setting up liblapacke (3.7.0-2) ... Setting up eigensoft (6.1.4+dfsg-1+b1) ... Setting up exim4-config (4.89-2+deb9u7) ... Adding system-user for exim (v4) Setting up exim4-base (4.89-2+deb9u7) ... exim: DB upgrade, deleting hints-db Setting up exim4-daemon-light (4.89-2+deb9u7) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Initializing GnuTLS DH parameter file Setting up exim4 (4.89-2+deb9u7) ... Setting up python-networkx (1.11-2) ... Setting up time (1.7-25.1+b1) ... Setting up falcon (1.8.6-1.1) ... Setting up libdisorder0:amd64 (0.0.2-1) ... Setting up libfastahack0 (0.0+20160702-1+b1) ... Setting up fastahack (0.0+20160702-1+b1) ... Setting up fastml (3.1-3) ... Setting up fastqc (0.11.5+dfsg-6) ... Installing new version of config file /etc/fastqc/Configuration/adapter_list.txt ... Installing new version of config file /etc/fastqc/Configuration/contaminant_list.txt ... Installing new version of config file /etc/fastqc/Configuration/limits.txt ... Setting up r-mathlib (3.3.3-1) ... Setting up fastqtl (2.184+dfsg-5) ... Setting up figtree (1.4.2+dfsg-2) ... Setting up filo (1.1.0-3+b1) ... Setting up flexbar (2.50-2+b1) ... Setting up fml-asm (0.1-2+b1) ... Setting up fonts-noto-mono (20161116-1) ... Setting up libavalon-framework-java (4.2.0-9) ... Setting up libfontbox-java (1:1.8.12-1) ... Setting up libfop-java (1:2.1-6) ... Setting up fop (1:2.1-6) ... Setting up fsa (1.15.9+dfsg-3) ... Setting up libsdsl3:amd64 (2.0.3-4) ... Setting up fsm-lite (1.0-2) ... Setting up libncl1 (2.1.18+dfsg-2+b1) ... Setting up garli (2.1-1) ... Setting up libbio-coordinate-perl (1.7.1-1) ... Setting up gbrowse (2.56+dfsg-2) ... Installing new version of config file /etc/default/gbrowse-slave ... Installing new version of config file /etc/gbrowse/GBrowse.conf ... Installing new version of config file /etc/gbrowse/languages/POSIX.pm ... Installing new version of config file /etc/gbrowse/plugins/Blat.pm ... Installing new version of config file /etc/gbrowse/plugins/FilterTest.pm ... Installing new version of config file /etc/gbrowse/plugins/PrimerDesigner.pm ... Installing new version of config file /etc/gbrowse/plugins/RestrictionAnnotator.pm ... Installing new version of config file /etc/gbrowse/plugins/Submitter.pm ... Installing new version of config file /etc/gbrowse/renderfarm.conf ... Installing new version of config file /etc/gbrowse/slave_preload.conf ... Installing new version of config file /etc/gbrowse/synteny/rice_synteny.conf ... Installing new version of config file /etc/gbrowse/synteny/wild_rice_synteny.conf ... Installing new version of config file /etc/gbrowse/yeast_chr1+2.conf ... Installing new version of config file /etc/init.d/gbrowse-slave ... apache2_invoke gbrowse: already enabled Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of reload. Setting up libgfortran-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up gfortran-6 (6.3.0-18+deb9u1) ... Setting up gfortran (4:6.3.0-4) ... Setting up libsc-data (2.3.1-18+deb9u1) ... Setting up libint1 (1.1.6-2+b1) ... Setting up libsc7v5 (2.3.1-18+deb9u1) ... Setting up mpqc (2.3.1-18+deb9u1) ... Setting up libmopac7-1gf (1.15-6+b1) ... Setting up libghemical-data (3.0.0-4.1) ... Setting up libghemical5v5 (3.0.0-4.1+b3) ... Setting up liboglappth2 (1.0.0-2) ... Setting up libopenbabel4v5 (2.3.2+dfsg-3) ... Setting up ghemical (3.0.0-2) ... Setting up libsuitesparseconfig4:amd64 (1:4.5.4-1) ... Setting up libamd2:amd64 (1:4.5.4-1) ... Setting up libcolamd2:amd64 (1:4.5.4-1) ... Setting up libglpk40:amd64 (4.61-1) ... Setting up glpk-utils (4.61-1) ... Setting up gnustep-dl2-postgresql-adaptor (0.12.0-15.1) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up python-matplotlib-data (2.0.0+dfsg1-2) ... Installing new version of config file /etc/matplotlibrc ... Setting up python-cycler (0.10.0-1) ... Setting up python-functools32 (3.2.3.2-3) ... Setting up python-subprocess32 (3.2.7-2) ... Setting up python-matplotlib (2.0.0+dfsg1-2) ... Setting up graphlan (1.1-2) ... Setting up libann0 (1.1.2+doc-6) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libgvc6 (2.38.0-17) ... Setting up graphviz (2.38.0-17) ... Setting up python3-numpy (1:1.12.1-3) ... Setting up python3-biopython (1.68+dfsg-3) ... Setting up gubbins (2.2.0-1) ... Setting up guile-2.0-libs:amd64 (2.0.13+1-4) ... Setting up gwama (2.2.2+dfsg-1) ... Setting up harvest-tools (1.3-1) ... Setting up hdf5-tools (1.10.0-patch1+docs-3+deb9u1) ... Setting up hilive (0.3-2) ... Setting up hisat2 (2.0.5-1) ... Setting up hyphy-common (2.2.7+dfsg-1) ... Setting up hyphy-mpi (2.2.7+dfsg-1+b2) ... Setting up hyphygui (2.2.7+dfsg-1+b2) ... Setting up icc-profiles-free (2.0.1+dfsg-1) ... Setting up icu-devtools (57.1-6+deb9u4) ... Setting up idba (1.1.3-1) ... Setting up imagemagick-6.q16 (8:6.9.7.4+dfsg-11+deb9u8) ... update-alternatives: warning: alternative /usr/bin/compare-im6 (part of link group compare) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/compare is dangling; it will be updated with best choice update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: warning: alternative /usr/bin/animate-im6 (part of link group animate) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/animate is dangling; it will be updated with best choice update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: warning: alternative /usr/bin/convert-im6 (part of link group convert) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/convert is dangling; it will be updated with best choice update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: warning: alternative /usr/bin/composite-im6 (part of link group composite) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/composite is dangling; it will be updated with best choice update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: warning: alternative /usr/bin/conjure-im6 (part of link group conjure) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/conjure is dangling; it will be updated with best choice update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: warning: alternative /usr/bin/import-im6 (part of link group import) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/import is dangling; it will be updated with best choice update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: warning: alternative /usr/bin/identify-im6 (part of link group identify) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/identify is dangling; it will be updated with best choice update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: warning: alternative /usr/bin/stream-im6 (part of link group stream) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/stream is dangling; it will be updated with best choice update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: warning: alternative /usr/bin/display-im6 (part of link group display) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/display is dangling; it will be updated with best choice update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: warning: alternative /usr/bin/montage-im6 (part of link group montage) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/montage is dangling; it will be updated with best choice update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: warning: alternative /usr/bin/mogrify-im6 (part of link group mogrify) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/mogrify is dangling; it will be updated with best choice update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up imagemagick (8:6.9.7.4+dfsg-11+deb9u8) ... Setting up indelible (1.03-2+b1) ... Setting up python-ptyprocess (0.5.1-1) ... Setting up python-pexpect (4.2.1-1) ... Setting up python-pathlib2 (2.2.0+really2.1.0-1) ... Setting up python-pickleshare (0.7.4-1) ... Setting up python-wcwidth (0.1.7+dfsg1-1) ... Setting up python-prompt-toolkit (1.0.9-1) ... Setting up python-ipython-genutils (0.1.0-2) ... Setting up python-enum34 (1.1.6-1) ... Setting up python-traitlets (4.3.1-1) ... Setting up python-backports-shutil-get-terminal-size (1.0.0-3) ... Setting up python-ipython (5.1.0-3) ... Setting up ipython (5.1.0-3) ... Setting up iqtree (1.5.3+dfsg-2) ... Setting up python-sympy (1.0-3) ... Setting up isympy-common (1.0-3) ... Setting up isympy (1.0-3) ... Setting up python3-decorator (4.0.11-1) ... Setting up python3-networkx (1.11-2) ... Setting up kmc (2.3+dfsg-5) ... Setting up iva (1.0.8+ds-1) ... Setting up jaligner (1.0+dfsg-4) ... Setting up libpal-java (1.5.1+dfsg-2) ... Setting up jmodeltest (2.1.10+dfsg-5) ... Setting up libnaga-java (3.0+svn80-1) ... Setting up libjmol-java (14.6.4+2016.11.05+dfsg1-3) ... Setting up jmol (14.6.4+2016.11.05+dfsg1-3) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-babel-localedata (2.3.4+dfsg.1-2) ... Setting up python-babel (2.3.4+dfsg.1-2) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python-imagesize (0.7.1-1) ... Setting up libjs-sphinxdoc (1.4.9-2) ... Setting up sphinx-common (1.4.9-2) ... Setting up python-sphinx (1.4.9-2) ... Setting up khmer-common (2.0+dfsg-10) ... Setting up python3-bz2file (0.98-1) ... Setting up python3-screed (0.9-2) ... Setting up khmer:amd64 (2.0+dfsg-10) ... Setting up python-h5py (2.7.0-1) ... Setting up python-avro (1.8.1+dfsg-1) ... Setting up python-iso8601 (0.1.11-1) ... Setting up python-urllib3 (1.19.1-1) ... Setting up python-requests (2.12.4-1) ... Setting up python-pbcommand (0.5.3-1) ... Setting up python-pysam (0.10.0+ds-2) ... Setting up python-pbcore (1.2.11+dfsg-1) ... Setting up kineticstools-data (0.6.1+20161222-1) ... Setting up python-kineticstools (0.6.1+20161222-1) ... Setting up kineticstools (0.6.1+20161222-1) ... Setting up king-probe (2.13.110909-2) ... Setting up kissplice (2.4.0-p1-1) ... Setting up sim4db (0~20150903+r2013-3) ... Setting up kmer (0~20150903+r2013-3) ... Setting up kraken (0.10.5~beta-2+b1) ... Setting up lambda-align (1.0.1-2) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up sysstat (11.4.3-2) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode Setting up parallel (20161222-1) ... Setting up last-align (830-1) ... Setting up lefse (1.0+20160802-1) ... Setting up libmodule-load-conditional-perl (0.68-1) ... Setting up libarchive-extract-perl (0.80-1) ... Setting up libarchive13:amd64 (3.2.2-2+deb9u2) ... Setting up libarpack2 (3.4.0-1+b1) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-2) ... Setting up libarmadillo7 (1:7.600.2+dfsg-2) ... Setting up libarray-utils-perl (0.5-1) ... Setting up libasm-java (5.2-2) ... Setting up libvariable-magic-perl (0.61-1) ... Setting up libb-hooks-endofscope-perl (0.21-1) ... Setting up libzstd1 (1.1.2-1) ... Setting up libblosc1 (1.11.1+ds2-1) ... Setting up libboost-atomic1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libbpp-core2v5:amd64 (2.2.0-3) ... Setting up libbpp-seq9v5:amd64 (2.2.0-1+b1) ... Setting up libbpp-phyl9v5:amd64 (2.2.0-1+b1) ... Setting up libbpp-seq-omics1v5:amd64 (2.2.0-1) ... Setting up libbpp-phyl-omics1v5 (2.2.0-2) ... Setting up libcapture-tiny-perl (0.44-1) ... Setting up libcfitsio5:amd64 (3.410-1) ... Setting up libclass-data-inheritable-perl (0.08-2) ... Setting up libpackage-stash-perl (0.37-1) ... Setting up libclass-load-perl (0.23-1) ... Setting up libclass-load-xs-perl (0.09-2+b1) ... Setting up libclass-tiny-perl (1.006-1) ... Setting up libcloog-isl4:amd64 (0.18.4-1+b1) ... Setting up libcofoja-java (1.3-1) ... Setting up libcommons-collections4-java (4.1-1) ... Setting up libcommons-configuration-java (1.10-4) ... Setting up libcpan-changes-perl (0.400002-1) ... Setting up libcrypto++6 (5.6.4-7) ... Setting up libcupsfilters1:amd64 (1.11.6-3+deb9u1) ... Setting up libdata-perl-perl (0.002009-1) ... Setting up libsub-identify-perl (0.12-2+b1) ... Setting up libdevel-overloadinfo-perl (0.004-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libdevel-partialdump-perl (0.18-2) ... Setting up libdevel-stacktrace-perl (2.0200-1) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up libdjvulibre21:amd64 (3.5.27.1-7) ... Setting up libdrm-amdgpu1:amd64 (2.4.74-1) ... Setting up libemail-date-format-perl (1.005-1) ... Setting up libenv-path-perl (0.19-1) ... Setting up liberfa1:amd64 (1.3.0-2) ... Setting up libeval-closure-perl (0.14-1) ... Setting up libexception-class-perl (1.42-1) ... Setting up libfastutil-java (7.0.13-1) ... Setting up libfile-copy-link-perl (0.140-2) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libfile-grep-perl (0.02-1) ... Setting up libfile-slurp-perl (9999.19-6) ... Setting up libfile-slurper-perl (0.009-1) ... Setting up libfindbin-libs-perl (2.150-1) ... Setting up libfltk1.3:amd64 (1.3.4-4) ... Setting up libfltk-images1.3:amd64 (1.3.4-4) ... Setting up libfribidi0:amd64 (0.19.7-1+deb9u1) ... Setting up libftgl2:amd64 (2.1.3~rc5-4+nmu1.1) ... Setting up libfuse2:amd64 (2.9.7-1+deb9u2) ... Setting up libgail18:amd64 (2.24.31-2) ... Setting up libgail-common:amd64 (2.24.31-2) ... Setting up libgenome-1.3-0v5:amd64 (1.3.1-9) ... Setting up libgetopt-java (1.0.14+dfsg-3) ... Setting up libgetopt-long-descriptive-perl (0.100-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-9) ... Setting up libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... Installing new version of config file /etc/drirc ... Setting up libglpk-java (1.7.0-1) ... Setting up libparse-yapp-perl (1.05-12) ... Setting up libgraph-readwrite-perl (2.09-1) ... Setting up libntlm0:amd64 (1.4-8) ... Setting up libgsasl7 (1.8.0-8+b2) ... Setting up libgsl-dev (2.3+dfsg-1) ... Setting up libgts-bin (0.7.6+darcs121130-4) ... Setting up libicu-dev (57.1-6+deb9u4) ... Setting up libilmbase12:amd64 (2.2.0-12) ... Setting up libipc-shareable-perl (0.61-1) ... Setting up libjline-java (1.0-2) ... Setting up libjs-bootstrap (3.3.7+dfsg-2+deb9u2) ... Setting up libjs-d3 (3.5.17-2) ... Setting up libjs-es5-shim (4.5.9-1) ... Setting up libjs-json (0~20160510-1) ... Setting up libvecmath-java (1.5.2-5) ... Setting up libjung-free-java (2.0.1+dfsg-1) ... Setting up libjxr0:amd64 (1.1-6+b1) ... Setting up libjxr-tools (1.1-6+b1) ... Setting up libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Setting up libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Setting up libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Setting up libmbedtls-dev:amd64 (2.4.2-1+deb9u3) ... Setting up libkdf5-2 (2.8.1+dfsg-2) ... Setting up libkyotocabinet16v5:amd64 (1.2.76-4.2+b1) ... Setting up liblog-dispatch-perl (2.58-1) ... Setting up liblog-log4perl-perl (1.48-1+deb9u1) ... Setting up libltdl-dev:amd64 (2.4.6-2) ... Setting up libopenexr22:amd64 (2.2.0-11+b1) ... Setting up libwmf0.2-7:amd64 (0.2.8.4-10.6) ... Setting up libmagickcore-6.q16-3-extra:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Setting up mailutils-common (1:3.1.1-1) ... Setting up libmailutils5:amd64 (1:3.1.1-1) ... Setting up libmath-random-isaac-xs-perl (1.004-2+b2) ... Setting up libmuscle-3.7-1 (3.7+4565-2) ... Setting up libmems-1.6-1v5:amd64 (1.6.0+4725-4) ... Setting up libmime-lite-perl (3.030-2) ... Setting up libmime-types-perl (2.13-1) ... Setting up libmodule-runtime-conflicts-perl (0.003-1) ... Setting up libpackage-deprecationmanager-perl (0.17-1) ... Setting up libpackage-stash-xs-perl (0.28-3+b1) ... Setting up libmoose-perl (2.1807-1) ... Setting up libmoox-handlesvia-perl (0.001008-2) ... Setting up libnamespace-autoclean-perl (0.28-1) ... Setting up libnanoxml2-java (2.2.3.dfsg-5) ... Setting up libncbi-vdb2 (2.8.1+dfsg-2) ... Setting up libncbi-wvdb2 (2.8.1+dfsg-2) ... Setting up libnetpbm10 (2:10.0-15.3+b2) ... Setting up netpbm (2:10.0-15.3+b2) ... Setting up libpath-tiny-perl (0.100-1) ... Setting up libperlio-utf8-strict-perl (0.006-1+b2) ... Setting up libpod-markdown-perl (3.005000-1) ... Setting up libpod-readme-perl (1.1.2-1) ... Setting up libpoppler-qt4-4:amd64 (0.48.0-2+deb9u2) ... Setting up libprocessing-core-java (1.2.1-1) ... Setting up qtchooser (63-g13a3d08-1) ... Setting up qdbus (4:4.8.7+dfsg-11) ... Setting up libqt4-dbus:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt4-script:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt4-declarative:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt4-designer:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt4-help:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt4-scripttools:amd64 (4:4.8.7+dfsg-11) ... Setting up libqt5xml5:amd64 (5.7.1+dfsg-3+deb9u2) ... Setting up libqtassistantclient4:amd64 (4.6.3-7+b1) ... Setting up librdp-taxonomy-tree-java (1.2.0-1) ... Setting up librhino-java (1.7.7.1-1) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libsaxon-java (1:6.5.5-10) ... Setting up libsmithwaterman0 (0.0+20160702-1+b1) ... Setting up libssw-java (1.1-1+b1) ... Setting up libsub-uplevel-perl (0.2600-1) ... Setting up libtabixpp0:amd64 (1.0.0-2) ... Setting up libtcmalloc-minimal4 (2.5-2.2) ... Setting up libtest-deep-perl (1.126-1) ... Setting up libtext-diff-perl (1.44-1) ... Setting up libtest-differences-perl (0.64-1) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libtest-file-perl (1.442-1) ... Setting up libtest-files-perl (0.14-1) ... Setting up libtest-warn-perl (0.32-1) ... Setting up libtest-simple-perl (1.302075-1) ... Setting up libtest-most-perl (0.35-1) ... Setting up libtest-output-perl (1.03-1) ... Setting up libtext-csv-perl (1.33-2) ... Setting up libtext-csv-xs-perl (1.26-1) ... Setting up libunicode-utf8-perl (0.60-1+b3) ... Setting up libvcflib1 (1.0.0~rc1+dfsg1-3) ... Setting up libvcflib-tools (1.0.0~rc1+dfsg1-3) ... Setting up libvisual-0.4-plugins:amd64 (1:0.4.0+dfsg1-10) ... Setting up libwacom-bin (0.22-1+b1) ... Setting up libwcs5:amd64 (5.16-1) ... Setting up libwebpdemux2:amd64 (0.5.2-1) ... Setting up libwebpmux2:amd64 (0.5.2-1) ... Setting up libxfont1:amd64 (1:1.5.2-4) ... Setting up libxtables12:amd64 (1.6.0+snapshot20161117-6) ... Setting up libzeus-jscl-java (1.72-1) ... Setting up swi-prolog-nox (7.2.3+dfsg-6) ... Setting up swi-prolog-x (7.2.3+dfsg-6) ... Setting up swi-prolog (7.2.3+dfsg-6) ... Setting up logol-bin (1.7.5-1) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up lynx (2.8.9dev11-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx-cur (2.8.9dev11-1) ... Setting up macsyfinder (1.0.2-3) ... Setting up maffilter (1.1.0-1+dfsg-2+b2) ... Setting up mailutils (1:3.1.1-1) ... update-alternatives: using /usr/bin/frm.mailutils to provide /usr/bin/frm (frm) in auto mode update-alternatives: using /usr/bin/from.mailutils to provide /usr/bin/from (from) in auto mode update-alternatives: using /usr/bin/messages.mailutils to provide /usr/bin/messages (messages) in auto mode update-alternatives: using /usr/bin/movemail.mailutils to provide /usr/bin/movemail (movemail) in auto mode update-alternatives: using /usr/bin/readmsg.mailutils to provide /usr/bin/readmsg (readmsg) in auto mode update-alternatives: using /usr/bin/dotlock.mailutils to provide /usr/bin/dotlock (dotlock) in auto mode update-alternatives: using /usr/bin/mail.mailutils to provide /usr/bin/mailx (mailx) in auto mode Setting up r-cran-codetools (0.2-15-1) ... Setting up r-cran-iterators (1.0.8-1) ... Setting up r-cran-foreach (1.4.3-1) ... Setting up r-cran-gam (1.14-1) ... Setting up r-cran-inline (0.3.14-1) ... Setting up r-cran-rcppgsl (0.3.2-2) ... Setting up mapdamage (2.0.6+dfsg-2) ... Setting up mapsembler2 (2.2.3+dfsg-3+b1) ... Setting up maq (0.7.1-7) ... Setting up maqview (0.2.5-7+b1) ... Setting up massxpert-data (3.6.1-1) ... Setting up massxpert (3.6.1-1) ... Setting up progressivemauve (1.2.0+4713-2+b2) ... Setting up mauve-aligner (2.4.0+4734-3) ... Setting up mcl (1:14-137-1+b1) ... Setting up menu (2.1.47+b1) ... Setting up mesa-utils (8.3.0-3) ... Setting up metaphlan2-data (2.6.0+ds-2) ... Settings: Output files: "/usr/share/metaphlan2/db_v20/mpa_v20_m200.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default Max bucket size, len divisor: 4 Difference-cover sample period: 1024 Endianness: little Actual local endianness: little Sanity checking: disabled Assertions: disabled Random seed: 0 Sizeofs: void*:8, int:4, long:8, size_t:8 Input files DNA, FASTA: /var/lib/metaphlan2-data/markers.fasta Building a SMALL index Reading reference sizes Time reading reference sizes: 00:00:04 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:06 bmax according to bmaxDivN setting: 177889396 Using parameters --bmax 133417047 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 133417047 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:15 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:07 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:08 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 7.11558e+08 (target: 133417046) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 1 No samples; assembling all-inclusive block Sorting block of length 711557587 for bucket 1 (Using difference cover) Sorting block time: 00:03:40 Returning block of 711557588 for bucket 1 Exited Ebwt loop fchr[A]: 0 fchr[C]: 193247476 fchr[G]: 355349181 fchr[T]: 534730948 fchr[$]: 711557587 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 304203219 bytes to primary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.1.bt2 Wrote 177889404 bytes to secondary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 711557587 bwtLen: 711557588 sz: 177889397 bwtSz: 177889397 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 44472350 offsSz: 177889400 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3706030 numLines: 3706030 ebwtTotLen: 237185920 ebwtTotSz: 237185920 color: 0 reverse: 0 Total time for call to driver() for forward index: 00:06:50 Reading reference sizes Time reading reference sizes: 00:00:03 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:06 Time to reverse reference sequence: 00:00:01 bmax according to bmaxDivN setting: 177889396 Using parameters --bmax 133417047 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 133417047 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:13 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:05 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:08 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 7.11558e+08 (target: 133417046) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 1 No samples; assembling all-inclusive block Sorting block of length 711557587 for bucket 1 (Using difference cover) Sorting block time: 00:03:35 Returning block of 711557588 for bucket 1 Exited Ebwt loop fchr[A]: 0 fchr[C]: 193247476 fchr[G]: 355349181 fchr[T]: 534730948 fchr[$]: 711557587 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 304203219 bytes to primary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.1.bt2 Wrote 177889404 bytes to secondary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 711557587 bwtLen: 711557588 sz: 177889397 bwtSz: 177889397 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 44472350 offsSz: 177889400 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3706030 numLines: 3706030 ebwtTotLen: 237185920 ebwtTotSz: 237185920 color: 0 reverse: 1 Total time for backward call to driver() for mirror index: 00:06:21 Metaphlan2 data are properly created. Setting up pyqi (0.3.2+dfsg-2) ... Setting up python-colorama (0.3.7-1) ... Setting up python-click (6.6-1) ... Setting up python-configparser (3.3.0r2-2) ... Setting up python-future (0.15.2-4) ... update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python-biom-format (2.1.5+dfsg-7) ... Setting up python-msgpack (0.4.8-1) ... Setting up python-pandas-lib (0.19.2-5.1) ... Setting up python-pandas (0.19.2-5.1) ... Setting up metaphlan2 (2.6.0+ds-2) ... Setting up mhap (2.1.1+dfsg-1) ... Setting up python-matplotlib-venn (0.11.5-1) ... Setting up python-sip (4.18.1+dfsg-2) ... Setting up python-qt4 (4.11.4+dfsg-2+b1) ... Setting up microbegps (1.0.0-2) ... Setting up minia (1.6906-1+b2) ... Setting up miniasm (0.2+dfsg-2+b1) ... Setting up minimap (0.2-3+b1) ... Setting up mothur (1.38.1.1-1) ... Setting up r-cran-gtools (3.5.0-1) ... Setting up r-cran-gdata (2.17.0-1) ... Setting up r-cran-catools (1.17.1-1+b1) ... Setting up r-cran-kernsmooth (2.23-15-2) ... Setting up r-cran-gplots (3.0.1-2) ... Setting up r-cran-rocr (1.0-7-2) ... Setting up murasaki-common (1.68.6-6) ... Setting up murasaki (1.68.6-6+b4) ... Setting up mustang (3.2.3-1) ... Setting up nanopolish (0.5.0-1+b1) ... Setting up ncbi-entrez-direct (6.10.20170123+ds-1) ... Setting up ncbi-epcr (2.3.12-1-4) ... Setting up ncl-tools (2.1.18+dfsg-2+b1) ... Setting up notification-daemon (3.20.0-1+b1) ... Removing obsolete conffile /etc/xdg/autostart/notification-daemon.desktop ... Setting up openssl (1.1.0l-1~deb9u1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up paraclu (9-1+b2) ... Setting up parafly (0.0.2013.01.21-3+b1) ... Setting up parsinsert (1.04-2) ... Setting up phipack (0.0.20160614-2) ... Setting up parsnp (1.2+dfsg-3) ... Setting up python-pbalign (0.3.0-1) ... Setting up pbalign (0.3.0-1) ... Setting up pbbamtools (0.7.4+ds-1) ... Setting up pbbarcode (0.8.0-4) ... Setting up pbdagcon (0.3+20161121+ds-1) ... Setting up python-pbconsensuscore (1.0.2-2) ... Setting up python-pbgenomicconsensus (2.1.0-1) ... Setting up pbgenomicconsensus (2.1.0-1) ... Setting up python-pbh5tools (0.8.0+dfsg-5) ... Setting up pbh5tools (0.8.0+dfsg-5) ... Setting up python-pbsuite-utils (15.8.24+dfsg-2) ... Setting up pbjelly (15.8.24+dfsg-2) ... Setting up python-pbbanana (15.8.24+dfsg-2) ... Setting up python-sortedcontainers (1.5.7-1) ... Setting up python-intervaltree (2.1.0-2) ... Setting up python-intervaltree-bio (1.0.1-1) ... Setting up pbhoney (15.8.24+dfsg-2) ... Setting up pbsim (1.0.3-2) ... Setting up pbsuite (15.8.24+dfsg-2) ... Setting up pdb2pqr (2.1.1+dfsg-2) ... Setting up perm (0.4.0-2) ... Setting up phybin (0.3-1+b1) ... Setting up phyml (3:3.2.0+dfsg-7+b1) ... Setting up physamp (0.2.0-1+b1) ... Setting up piler (0~20140707-1+b1) ... Setting up pirs-profiles (2.0.2+dfsg-5.1) ... Setting up ttf-liberation (1:1.07.4-2) ... Setting up pirs (2.0.2+dfsg-5.1+b1) ... Setting up pkg-config (0.29-4+b1) ... Setting up placnet (1.03-2) ... Setting up plast (2.3.1+dfsg-4) ... Setting up plink (1.07-7) ... Setting up plink1.9 (1.90~b3.45-170113-1) ... Setting up python-opengl (3.1.0+dfsg-1) ... Setting up pymol-data (1.8.4.0+dfsg-1) ... Setting up pymol (1.8.4.0+dfsg-1) ... Setting up python-lxml (3.7.1-1) ... Setting up python-openbabel (2.3.2+dfsg-3) ... Setting up plip (1.3.3+dfsg-1) ... Setting up python-seaborn (0.7.1-4) ... Setting up poretools (0.6.0+dfsg-2) ... Setting up prank (0.0.150803-2) ... Setting up primer3 (2.3.7-3) ... Installing new version of config file /etc/primer3_config/interpretations/stack_i.dh ... Installing new version of config file /etc/primer3_config/interpretations/stack_i.ds ... Installing new version of config file /etc/primer3_config/interpretations/stackmm_i_mm.dh ... Installing new version of config file /etc/primer3_config/interpretations/stackmm_i_mm.ds ... Installing new version of config file /etc/primer3_config/interpretations/tstack2_i.ds ... Installing new version of config file /etc/primer3_config/stackmm.dh ... Installing new version of config file /etc/primer3_config/stackmm.ds ... Installing new version of config file /etc/primer3_config/tstack2.ds ... Setting up probabel (0.4.5-3+b1) ... Setting up probalign (1.4-5) ... Setting up probcons (1.12-11) ... Setting up proteinortho (5.15+dfsg-1) ... Setting up prottest (3.4.2+dfsg-2) ... Setting up psmisc (22.21-2.1+b2) ... Setting up python-lmfit (0.9.5+dfsg-2) ... Setting up pycorrfit (0.9.9+dfsg-2) ... Setting up python-configobj (5.0.6-2) ... Setting up python-ply (3.9-1) ... Setting up python-py (1.4.32-3) ... Setting up python-pytest (3.0.6-1) ... Setting up python-astropy (1.3-8) ... Setting up pyscanfcs (0.2.3-3) ... Setting up python-antlr (2.7.7+dfsg-7) ... Setting up python-bs4 (4.5.3-1) ... Setting up python-cffi-backend (1.9.1-2) ... Setting up python-idna (2.2-1) ... Setting up python-ipaddress (1.0.17-1) ... Setting up python-pyasn1 (0.1.9-2) ... Setting up python-setuptools (33.1.1-1) ... Setting up python-cryptography (1.7.1-3+deb9u2) ... Setting up libdsdp-5.8gf (5.8-9.4) ... Setting up python-cvxopt (1.1.4-1.5+deb9u1) ... Setting up python-dendropy (4.2.0+dfsg-1) ... Setting up python-funcsigs (1.0.2-3) ... Setting up python-webencodings (0.5-2) ... Setting up python-html5lib (0.999999999-1) ... Setting up python-jdcal (1.0-1.2~deb9u1) ... Setting up python-mysqldb (1.3.7-1.1) ... Setting up python-numexpr (2.6.1-4) ... Setting up python-openpyxl (2.3.0-3) ... Setting up python-openssl (16.2.0-1) ... Setting up python-patsy (0.4.1+git34-ga5b54c2-1) ... Setting up python-pbr (1.10.0-1) ... update-alternatives: using /usr/bin/python2-pbr to provide /usr/bin/pbr (pbr) in auto mode Setting up python-pil:amd64 (4.0.0-4+deb9u1) ... Setting up python-pyfits (1:3.4-4) ... Setting up python-pygraphviz (1.4~rc1-1) ... Setting up python-singledispatch (3.4.0.3-2) ... Setting up python-rpy2 (2.8.5-1) ... Setting up python-ruffus (2.6.3+dfsg-4) ... Setting up python-simplejson (3.10.0-1) ... Setting up python-sklearn-lib (0.18-5) ... Setting up python-sklearn (0.18-5) ... Setting up python-sympy-doc (1.0-3) ... Setting up python-tables-lib (3.3.0-5) ... Setting up python-tables-data (3.3.0-5) ... Setting up python-tables (3.3.0-5) ... Setting up python-xlrd (1.0.0-1) ... Setting up python-xlwt (0.7.5+debian1-1) ... Setting up python3-bs4 (4.5.3-1) ... Setting up python3-chardet (2.3.0-2) ... Setting up python3-six (1.10.0-3) ... Setting up python3-webencodings (0.5-2) ... Setting up python3-html5lib (0.999999999-1) ... Setting up python3-pil:amd64 (4.0.0-4+deb9u1) ... Setting up python3-py (1.4.32-3) ... Setting up python3-pytest (3.0.6-1) ... Setting up python3-renderpm:amd64 (3.3.0-2+deb9u1) ... Setting up python3-yaml (3.12-1) ... Setting up qt-at-spi:amd64 (0.4.0-5) ... Setting up qt5-gtk-platformtheme:amd64 (5.7.1+dfsg-3+deb9u2) ... Setting up qtltools (1.1+dfsg-1) ... Setting up qttranslations5-l10n (5.7.1~20161021-1) ... Setting up r-cran-boot (1.3-18-2) ... Setting up r-cran-foreign (0.8.67-1) ... Setting up r-cran-nlme (3.1.129-1) ... Setting up r-cran-mgcv (1.8-16-1) ... Setting up r-cran-class (7.3-14-1) ... Setting up r-cran-nnet (7.3-12-1) ... Setting up r-cran-spatial (7.3-11-1) ... Setting up r-recommended (3.3.3-1) ... Setting up r-base (3.3.3-1) ... Setting up r-base-dev (3.3.3-1) ... Setting up r-bioc-biocgenerics (0.20.0-1) ... Setting up r-bioc-biobase (2.34.0-1) ... Setting up r-bioc-s4vectors (0.12.1-2+b1) ... Setting up r-bioc-iranges (2.8.1-1+b1) ... Setting up r-cran-dbi (0.5-1-1) ... Setting up r-cran-memoise (1.0.0-1) ... Setting up r-cran-rsqlite (1.1-2-1) ... Setting up r-bioc-annotationdbi (1.36.1-2) ... Setting up r-cran-xml (3.98-1.5-1) ... Setting up r-cran-xtable (1:1.8-2-1) ... Setting up r-cran-rcurl (1.95-4.8-2) ... Setting up r-bioc-annotate (1.52.1+dfsg-1) ... Setting up r-bioc-biocinstaller (1.24.0-1) ... Setting up r-cran-httpuv (1.3.3-3) ... Setting up r-cran-jsonlite (1.2-1) ... Setting up r-cran-r6 (2.2.0-2) ... Setting up r-cran-sourcetools (0.1.5-1) ... Setting up r-cran-shiny (1.0.0+dfsg-1) ... Setting up r-bioc-interactivedisplaybase (1.12.0-1) ... Setting up r-cran-curl (2.3-1) ... Setting up r-cran-openssl (0.9.6-1) ... Setting up r-cran-httr (1.2.1-1) ... Setting up r-bioc-annotationhub (2.6.4-1) ... Setting up r-cran-lambda.r (1.1.9-1) ... Setting up r-cran-futile.options (1.0.0-2) ... Setting up r-cran-futile.logger (1.4.3-1) ... Setting up r-cran-snow (1:0.4.2-1) ... Setting up r-bioc-biocparallel (1.8.1-1) ... Setting up r-bioc-biomart (2.30.0-1) ... Setting up r-bioc-biomformat (1.2.0-1) ... Setting up r-bioc-xvector (0.14.0-1+b1) ... Setting up r-bioc-biostrings (2.42.1-1) ... Setting up r-bioc-genomeinfodb (1.10.3-1) ... Setting up r-bioc-genomicranges (1.26.2-1+b1) ... Setting up r-bioc-summarizedexperiment (1.4.0-2) ... Setting up r-bioc-rsamtools (1.26.1-2+b1) ... Setting up r-bioc-genomicalignments (1.10.0-1+b1) ... Setting up r-bioc-rtracklayer (1.34.1-1) ... Setting up r-bioc-genomicfeatures (1.26.2-1) ... Setting up r-bioc-bsgenome (1.42.0-2) ... Setting up r-bioc-variantannotation (1.20.2-1+b1) ... Setting up r-bioc-ensembldb (1.6.2-1) ... Setting up r-bioc-biovizbase (1.22.0-2) ... Setting up r-cran-matrixstats (0.51.0-1) ... Setting up r-bioc-gviz (1.18.1-1) ... Setting up r-bioc-cummerbund (2.16.0-2) ... Setting up r-bioc-genefilter (1.56.0-1) ... Setting up r-bioc-geneplotter (1.52.0-2) ... Setting up r-bioc-deseq2 (1.14.1-1) ... Setting up r-bioc-dnacopy (1.48.0-1) ... Setting up r-cran-blockmodeling (0.1.8-1) ... Setting up r-cran-crayon (1.3.2-1) ... Setting up r-cran-praise (1.0.0-1) ... Setting up r-cran-testthat (1.0.2-2) ... Setting up r-bioc-ebseq (1.14.0-1) ... Setting up r-bioc-limma (3.30.8+dfsg-1) ... Setting up r-bioc-edger (3.14.0+dfsg-1) ... Setting up r-bioc-hilbertvis (1.32.0-1) ... Setting up r-bioc-mergeomics (1.2.0-1) ... Setting up r-cran-glmnet (2.0-5-1) ... Setting up r-bioc-metagenomeseq (1.16.0-2) ... Setting up r-bioc-multtest (2.30.0-1) ... Setting up r-cran-ade4 (1.7-5-1) ... Setting up r-cran-ape (4.0-1) ... Setting up r-cran-registry (0.3-1) ... Setting up r-cran-pkgmaker (0.22-1) ... Setting up r-cran-rngtools (1.2.4-2) ... Setting up r-cran-gridbase (0.4-7-2) ... Setting up r-cran-doparallel (1.0.10-3) ... Setting up r-cran-nmf (0.20.6-1) ... Setting up r-cran-irlba (2.1.2-1) ... Setting up r-cran-igraph (1.0.1-1+deb9u1) ... Setting up r-cran-vegan (2.4-2-1) ... Setting up r-bioc-phyloseq (1.19.1-2) ... Setting up r-bioc-qvalue (2.6.0-1) ... Setting up r-bioc-shortread (1.32.0-1+b1) ... Setting up r-cran-abind (1.4-5-1) ... Setting up r-cran-segmented (0.5-1.4-1) ... Setting up r-cran-seqinr (3.3-3-1) ... Setting up r-cran-dplyr (0.5.0-1) ... Setting up r-cran-sp (1:1.2-4-1) ... Setting up r-cran-learnbayes (2.15-3) ... Setting up r-cran-deldir (0.1-12-1) ... Setting up r-cran-coda (0.19-1-1) ... Setting up r-cran-gmodels (2.16.2-2) ... Setting up r-cran-spdep (0.6-9-1) ... Setting up r-cran-adegenet (2.0.1-1) ... Setting up r-cran-adegraphics (1.0-6-1) ... Setting up r-cran-prettyunits (1.0.2-1) ... Setting up r-cran-progress (1.1.2-1) ... Setting up r-cran-rncl (0.8.2-1) ... Setting up r-cran-xml2 (1.1.0-1) ... Setting up r-cran-reshape (0.8.6-1) ... Setting up r-cran-bold (0.4.0-1) ... Setting up r-cran-rredlist (0.2.0-1) ... Setting up r-cran-rentrez (1.0.4-1) ... Setting up r-cran-rotl (3.0.1-1) ... Setting up r-cran-solrium (0.4.0-1) ... Setting up r-cran-ritis (0.5.4-1) ... Setting up r-cran-taxize (0.8.0-1) ... Setting up r-cran-uuid (0.1.2-8) ... Setting up r-cran-tidyr (0.6.1-1) ... Setting up r-cran-rnexml (2.0.7-1) ... Setting up r-cran-phylobase (0.8.2-1) ... Setting up r-cran-adephylo (1.1-10-2) ... Setting up r-cran-backports (1.0.5-1) ... Setting up r-cran-checkmate (1.8.2-1) ... Setting up r-cran-bbmisc (1.10-1) ... Setting up r-cran-fail (1.3-1) ... Setting up r-cran-batchjobs (1.6-1) ... Setting up r-cran-numderiv (2016.8-1-1) ... Setting up r-cran-bbmle (1.0.18-2) ... Setting up r-cran-bio3d (2.3-1-1) ... Setting up r-cran-combinat (0.0-8-4) ... Setting up r-cran-distory (1.4.2-1) ... Setting up r-cran-domc (1.3.4-1) ... Setting up r-cran-ellipse (0.3-8-1) ... Setting up r-cran-fastmatch (1.0-4-1) ... Setting up r-cran-spam (1.4-0-1) ... Setting up r-cran-maps (3.1.1-1) ... Setting up r-cran-fields (8.10-1) ... Setting up r-cran-globals (0.8.0-1) ... Setting up r-cran-listenv (0.6.0-1) ... Setting up r-cran-future (1.2.0-1) ... Setting up r-cran-genabel (1.8-0-1+b1) ... Setting up r-cran-googlevis (0.6.2-1) ... Setting up r-cran-htmlwidgets (0.8-1) ... Setting up r-cran-minpack.lm (1.2-1-1) ... Setting up r-cran-raster (2.5-8-1) ... Setting up r-cran-readxl (0.1.1-1+deb9u2) ... Setting up r-cran-shape (1.4.2-1) ... Setting up r-cran-zoo (1.7-14-1) ... Setting up r-cran-luminescence (0.6.4-1) ... Setting up r-cran-mapproj (1.2-4-1) ... Setting up r-cran-optparse (1.3.2-1) ... Setting up r-cran-quadprog (1.5-5-2) ... Setting up r-cran-phangorn (2.1.1-1) ... Setting up r-cran-proto (1.0.0-1) ... Setting up r-cran-r.methodss3 (1.7.1-1) ... Setting up r-cran-r.oo (1.21.0-1) ... Setting up r-cran-r.utils (2.5.0-1) ... Setting up r-cran-r.cache (0.12.0-2) ... Setting up r-cran-pscbs (0.62.0-1) ... Setting up r-cran-qtl (1.40-8-1) ... Setting up r-cran-randomforest (4.6-12-1) ... Setting up r-cran-rgl (0.96.0-1) ... Setting up r-cran-rlumshiny (0.1.1-1) ... Setting up r-cran-scatterd3 (0.8.1+dfsg-1) ... Setting up r-cran-shinybs (0.61-1) ... Setting up r-cran-tcltk2 (1.2-11-1) ... Setting up r-cran-treescape (1.10.18-6) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up ruby-minitest (5.9.0-1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up rake (10.5.0-2+deb9u1) ... Setting up libruby2.3:amd64 (2.3.3-1+deb9u8) ... Setting up ruby2.3 (2.3.3-1+deb9u8) ... Setting up ruby (1:2.3.3) ... Setting up rambo-k (1.21+dfsg-1) ... Setting up rapmap (0.4.0+dfsg-2) ... Setting up rdp-readseq (2.0.2-2) ... Setting up rdp-alignment (1.2.0-2) ... Setting up rdp-classifier (2.10.2-1) ... Setting up rdp-classifier-doc (2.10.2-1) ... Setting up snpomatic (1.0-3+b1) ... Setting up tabix (1.3.2-2) ... Setting up reapr (1.0.18+dfsg-3) ... Setting up repeatmasker-recon (1.08-3+b1) ... Setting up rhino (1.7.7.1-1) ... update-alternatives: using /usr/bin/rhino to provide /usr/bin/js (js) in auto mode Setting up rna-star (2.5.2b+dfsg-1) ... Setting up roary (3.8.0+dfsg-1) ... Setting up bowtie (1.1.2-6) ... Setting up rsem (1.2.31+dfsg-1) ... Setting up saint (2.5.0+dfsg-2+b1) ... Setting up libjs-modernizr (2.6.2+ds1-1) ... Setting up sphinx-rtd-theme-common (0.1.9-1) ... Setting up salmon (0.7.2+ds1-2+b1) ... Setting up sane-utils (1.0.25-4.1) ... Installing new version of config file /etc/init.d/saned ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up scrm (1.7.2-1+b1) ... Setting up scythe (0.994-4) ... Setting up seaview (1:4.6.1.2-2) ... Setting up seer (1.1.2-3) ... Setting up seqan-apps (2.3.1+dfsg-4) ... Setting up seqprep (1.3.2-1) ... Setting up sga (0.10.15-2) ... Setting up sickle (1.33-1+b1) ... Setting up smithwaterman (0.0+20160702-1+b1) ... Setting up smrtanalysis (0~20161126) ... Setting up snap-aligner (1.0~beta.18+dfsg-1) ... Setting up sniffles (1.0.2+ds-1) ... Setting up soapdenovo2 (240+dfsg1-2) ... Setting up sortmerna (2.1-1+b1) ... Setting up spaced (1.0.2+dfsg-1+b1) ... Setting up sprai (0.9.9.22+dfsg-1) ... Setting up spread-phy (1.0.7+dfsg-1) ... Setting up sra-toolkit (2.8.1-2+dfsg-2) ... Installing new version of config file /etc/ncbi/default.kfg ... Installing new version of config file /etc/ncbi/vdb-copy.kfg ... Setting up srst2 (0.2.0-4) ... Setting up sspace (2.1.1+dfsg-2) ... Setting up ssw-align (1.1-1+b1) ... Setting up stacks (1.44-2+b1) ... Setting up staden-common (2.0.0+b11-2) ... Setting up staden-io-lib-utils (1.14.8-2) ... Setting up staden (2.0.0+b11-2+b1) ... Setting up subread (1.5.1+dfsg-4) ... Setting up suitename (0.3.070628-1+b1) ... Setting up sumaclust (1.0.20-1+b1) ... Setting up sumatra (1.0.20-1+b1) ... Setting up sumtrees (4.2.0+dfsg-1) ... Setting up surankco (0.0.r5+dfsg-1) ... Setting up swarm (2.1.12+dfsg-1) ... Setting up t-coffee (11.00.8cbe486-5) ... Setting up tantan (13-4) ... Setting up tex-gyre (20160520-1) ... Setting up tigr-glimmer (3.02b-1) ... Setting up tophat (2.1.1+dfsg-2+b2) ... Setting up toppred (1.10-4) ... Setting up transdecoder (3.0.1+dfsg-1) ... Setting up transrate-tools (1.0.0-1+b1) ... Setting up transtermhp (2.09-3+b1) ... Setting up treeview (1.1.6.4+dfsg1-2) ... Setting up trinityrnaseq (2.2.0+dfsg-2+b1) ... Setting up trinityrnaseq-examples (2.2.0+dfsg-2) ... Setting up uc-echo (1.12-9+b1) ... Setting up varna (3-93+ds-1) ... Setting up vprerex (6.5.3-1+b2) ... Setting up vsearch (2.3.4-1) ... Setting up xfonts-encodings (1:1.0.4-2) ... Setting up xfonts-utils (1:7.7+4) ... Setting up xfonts-100dpi (1:1.0.4+nmu1) ... Setting up acedb-other-belvu (4.9.39+dfsg.02-1) ... Setting up acedb-other-dotter (4.9.39+dfsg.02-1) ... Setting up astro-tasks (1.0) ... Setting up autodock-vina (1.1.2-3+b6) ... Setting up critterding (1.0-beta12.1-1.3+b1) ... Setting up datamash (1.0.7-1) ... Setting up debichem-tasks (0.0.6) ... Setting up disulfinder (1.2.11-6) ... Setting up edtsurf (0.2009-4+b1) ... Setting up libffindex0 (0.9.9.7-3) ... Setting up ffindex (0.9.9.7-3) ... Setting up gnupg-l10n (2.1.18-8~deb9u4) ... Setting up gromacs-data (2016.1-2) ... Setting up libgromacs2 (2016.1-2) ... Setting up gromacs (2016.1-2) ... Setting up hhsuite-data (3.0~beta2+dfsg-3) ... Setting up hhsuite (3.0~beta2+dfsg-3) ... Setting up med-tasks (3.0.1) ... Setting up populations (1.2.33+svn0120106-2.1+b1) ... Setting up pp-popularity-contest (1.0.6-2+b4) ... Setting up publicsuffix (20190415.1030-0+deb9u1) ... Setting up python-mock (2.0.0-3) ... Setting up python-mpi4py (2.0.0-2.1+deb9u1) ... Setting up python-statsmodels-lib (0.8.0~rc1+git59-gef47cd9-5) ... Setting up python-statsmodels (0.8.0~rc1+git59-gef47cd9-5) ... Setting up python3-scipy (0.18.1-2) ... Setting up r-base-html (3.3.3-1) ... Setting up rate4site (3.0.0-4+b1) ... Setting up science-tasks (1.7) ... Setting up vcftools (0.1.14+dfsg-4+deb9u1) ... Processing triggers for menu (2.1.47+b1) ... Setting up med-config (3.0.1) ... Setting up med-bio (3.0.1) ... Setting up science-config (1.7) ... Setting up science-biology (1.7) ... Processing triggers for tex-common (6.06) ... texlive-base is not ready, delaying updmap-sys call update-language: texlive-base not installed and configured, doing nothing! Warning: Old configuration style found in /etc/texmf/fmt.d Warning: For now these files have been included, Warning: but expect inconsistencies. Warning: These packages should be rebuild with tex-common. Warning: Please see /usr/share/doc/tex-common/NEWS.Debian.gz Warning: found file: /etc/texmf/fmt.d/10texlive-math-extra.cnf texlive-base is not ready, skipping fmtutil --all call Setting up dvipng (1.14-2+b3) ... Setting up texlive-base (2016.20170123-5) ... Installing new version of config file /etc/libpaper.d/texlive-base ... Installing new version of config file /etc/texmf/texdoctk/texdocrc.defaults ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Removing obsolete conffile /etc/texmf/fmt.d/10texlive-base.cnf ... Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Warning: Old configuration style found in /etc/texmf/fmt.d Warning: For now these files have been included, Warning: but expect inconsistencies. Warning: These packages should be rebuild with tex-common. Warning: Please see /usr/share/doc/tex-common/NEWS.Debian.gz Warning: found file: /etc/texmf/fmt.d/10texlive-math-extra.cnf Building format(s) --all. This may take some time... done. Setting up texlive-font-utils (2016.20170123-5) ... Setting up texlive-fonts-extra (2016.20170123-5) ... Setting up texlive-latex-extra-doc (2016.20170123-5) ... Setting up texlive-fonts-extra-doc (2016.20170123-5) ... Setting up texlive-fonts-recommended (2016.20170123-5) ... Setting up texlive-fonts-recommended-doc (2016.20170123-5) ... Setting up texlive-generic-recommended (2016.20170123-5) ... Setting up texlive-latex-base-doc (2016.20170123-5) ... Setting up texlive-latex-recommended-doc (2016.20170123-5) ... Setting up texlive-pictures-doc (2016.20170123-5) ... Setting up texlive-pstricks-doc (2016.20170123-5) ... Setting up texlive-generic-extra (2016.20170123-5) ... Setting up texlive-science-doc (2016.20170123-5) ... Setting up texlive-latex-base (2016.20170123-5) ... Removing obsolete conffile /etc/texmf/fmt.d/10texlive-latex-base.cnf ... Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Warning: Old configuration style found in /etc/texmf/fmt.d Warning: For now these files have been included, Warning: but expect inconsistencies. Warning: These packages should be rebuild with tex-common. Warning: Please see /usr/share/doc/tex-common/NEWS.Debian.gz Warning: found file: /etc/texmf/fmt.d/10texlive-math-extra.cnf Building format(s) --all. This may take some time... done. Setting up texlive-latex-recommended (2016.20170123-5) ... Setting up texlive-pictures (2016.20170123-5) ... Setting up texlive-science (2016.20170123-5) ... Setting up texlive-extra-utils (2016.20170123-5) ... Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Warning: Old configuration style found in /etc/texmf/fmt.d Warning: For now these files have been included, Warning: but expect inconsistencies. Warning: These packages should be rebuild with tex-common. Warning: Please see /usr/share/doc/tex-common/NEWS.Debian.gz Warning: found file: /etc/texmf/fmt.d/10texlive-math-extra.cnf Building format(s) --all. This may take some time... done. Setting up texlive-pstricks (2016.20170123-5) ... Setting up prosper (1.00.4+cvs.2007.05.01-4.1) ... Setting up texlive-latex-extra (2016.20170123-5) ... Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.034-1) ... Setting up debhelper (10.2.5) ... Processing triggers for shared-mime-info (1.8-1+deb9u1) ... Processing triggers for fontconfig (2.11.0-6.7+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for systemd (232-25+deb9u12) ... Processing triggers for dictionaries-common (1.27.2) ... 33m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-yf', 'dist-upgrade'] 33m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 33m8.3s DUMP: 660e5103244a20b75ca08c3f8741e16e - 33m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 33m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'show', '--no-all-versions', 'science-biology'] 33m8.5s DUMP: Package: science-biology Source: debian-science Version: 1.7 Installed-Size: 37 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.7), science-config (= 1.7) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description-en: Debian Science Biology packages This metapackage will install Debian Science packages related to Biology. You might also be interested in the field::biology debtag. . This metapackage makes use of the packages med-bio and med-bio-dev (for development of biological applications) which are maintained by Debian Med - another Debian Pure Blend. If you are a biologist you are most probably interested in the Debian Med project which deals with biology and medicine in much more detail then the more general Debian Science. Description-md5: 59633f821572a37f2f07d2231a8d2300 Homepage: http://wiki.debian.org/DebianScience/ Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.7_all.deb Size: 16416 MD5sum: 00327a3b7447eb2e28e3e6f0eefae35b SHA256: 7675e9023e8d241f3df72bcb4fa7cabb2b6045594a2cdf341e88c13b54f54b1c 33m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'show', '--no-all-versions', 'science-biology'] 33m8.5s INFO: apt-cache knows about the following packages: science-biology 33m8.5s INFO: Running scripts pre_install 33m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_database-server'] 33m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_database-server'] 33m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_exceptions'] 33m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_exceptions'] 33m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_extras'] 33m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_extras'] 33m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture'] 33m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture'] 33m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 33m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 33m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy'] 33m8.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 33m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy'] 33m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy', 'science-biology'] 33m8.8s DUMP: science-biology: Installed: 1.7 Candidate: 1.7 Version table: *** 1.7 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 33m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy', 'science-biology'] 33m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-y', 'install', 'science-biology'] 33m9.0s DUMP: Reading package lists... Building dependency tree... Reading state information... science-biology is already the newest version (1.7). The following packages were automatically installed and are no longer required: fonts-inconsolata ifupdown imagemagick-common iproute2 isc-dhcp-client isc-dhcp-common javahelp2 jmol-applet libamd2.3.1 libapache-mime4j-java libarchive-extract-perl libasm-java libatm1 libbamtools2.3.0 libboost-chrono1.55.0 libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-math1.55.0 libboost-program-options1.55.0 libboost-random1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libboost-timer1.55.0 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcastor-core-java libcastor-xml-java libcfitsio2 libcofoja-java libcolamd2.8.0 libcommons-net2-java libcpan-changes-perl libcpan-meta-perl libcr0 libdata-perl-perl libdata-section-perl libdirectfb-1.2-9 libdns-export100 libdns-export162 libelfg0 libfile-slurp-perl libgetopt-long-descriptive-perl libgif4 libglew1.10 libglpk36 libgnuinet-java libgnumail-java libgnutls-deb0-28 libgphoto2-port10 libhdf5-8 libheap-perl libhogweed2 libhttpclient-java libhttpcore-java libhttpmime-java libice-dev libicu52 libilmbase6 libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjaba-client-java libjasper1 libjson-c2 libjsoncpp0 libjswingreader-java libllvm3.5 liblog-message-perl liblog-message-simple-perl libmiglayout-java libmnl0 libmodule-build-perl libmodule-load-conditional-perl libmodule-pluggable-perl libmodule-signature-perl libmoox-handlesvia-perl libmysqlclient18 libnamespace-autoclean-perl libnettle4 libopenexr6 libopenjpeg5 libpackage-constants-perl libpango1.0-0 libpath-tiny-perl libpod-latex-perl libpod-markdown-perl libpod-readme-perl libpoppler46 libprotobuf9 libpthread-stubs0-dev libpython-all-dev libsam-java libsaxonb-java libsctp1 libservlet2.5-java libsm-dev libsoftware-license-perl libsqlite0 libstaden-read1 libsvm3 libtcl8.5 libtcmalloc-minimal4 libtdb1 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtk8.5 libunicode-utf8-perl libv4l-0 libv4lconvert0 libvamsas-client-java libvorbisfile3 libvpx1 libwebp5 libwebpdemux1 libwebpmux1 libx11-dev libx11-doc libxau-dev libxcb1-dev libxdmcp-dev libxt-dev libxtables10 libxtables12 lksctp-tools mysql-client openms-common python-all python-all-dev python-pyfits python-pyrex python-support r-cran-domc r-cran-proto r-cran-tcltk2 sra-toolkit-libs0 tk-table x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 33m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-y', 'install', 'science-biology'] 33m9.0s INFO: Running scripts post_install 33m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_install_exceptions'] 33m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_install_exceptions'] 33m9.1s INFO: Running scripts post_distupgrade 33m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_base_cleanup'] 33m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_base_cleanup'] 33m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_exceptions'] 33m9.2s DUMP: mode of '/usr/share/man/sl' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man1' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man8' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) 33m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_exceptions'] 33m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 33m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 33m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_squeeze-backports'] 33m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_squeeze-backports'] 33m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_zz_backports'] 33m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_distupgrade_zz_backports'] 33m9.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 33m19.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 33m19.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 33m31.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 33m31.3s INFO: Running scripts pre_install 33m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_database-server'] 33m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_database-server'] 33m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_exceptions'] 33m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_exceptions'] 33m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_extras'] 33m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_extras'] 33m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture'] 33m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture'] 33m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 33m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 33m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy'] 33m31.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 33m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy'] 33m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy', 'science-biology'] 33m31.5s DUMP: science-biology: Installed: 1.7 Candidate: 1.7 Version table: *** 1.7 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 33m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-cache', 'policy', 'science-biology'] 33m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-y', 'install', 'science-biology=1.7'] 33m31.7s DUMP: Reading package lists... Building dependency tree... Reading state information... science-biology is already the newest version (1.7). The following packages were automatically installed and are no longer required: fonts-inconsolata ifupdown imagemagick-common iproute2 isc-dhcp-client isc-dhcp-common javahelp2 jmol-applet libamd2.3.1 libapache-mime4j-java libarchive-extract-perl libasm-java libatm1 libbamtools2.3.0 libboost-chrono1.55.0 libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-math1.55.0 libboost-program-options1.55.0 libboost-random1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libboost-timer1.55.0 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcastor-core-java libcastor-xml-java libcfitsio2 libcofoja-java libcolamd2.8.0 libcommons-net2-java libcpan-changes-perl libcpan-meta-perl libcr0 libdata-perl-perl libdata-section-perl libdirectfb-1.2-9 libdns-export100 libdns-export162 libelfg0 libfile-slurp-perl libgetopt-long-descriptive-perl libgif4 libglew1.10 libglpk36 libgnuinet-java libgnumail-java libgnutls-deb0-28 libgphoto2-port10 libhdf5-8 libheap-perl libhogweed2 libhttpclient-java libhttpcore-java libhttpmime-java libice-dev libicu52 libilmbase6 libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libjaba-client-java libjasper1 libjson-c2 libjsoncpp0 libjswingreader-java libllvm3.5 liblog-message-perl liblog-message-simple-perl libmiglayout-java libmnl0 libmodule-build-perl libmodule-load-conditional-perl libmodule-pluggable-perl libmodule-signature-perl libmoox-handlesvia-perl libmysqlclient18 libnamespace-autoclean-perl libnettle4 libopenexr6 libopenjpeg5 libpackage-constants-perl libpango1.0-0 libpath-tiny-perl libpod-latex-perl libpod-markdown-perl libpod-readme-perl libpoppler46 libprotobuf9 libpthread-stubs0-dev libpython-all-dev libsam-java libsaxonb-java libsctp1 libservlet2.5-java libsm-dev libsoftware-license-perl libsqlite0 libstaden-read1 libsvm3 libtcl8.5 libtcmalloc-minimal4 libtdb1 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtk8.5 libunicode-utf8-perl libv4l-0 libv4lconvert0 libvamsas-client-java libvorbisfile3 libvpx1 libwebp5 libwebpdemux1 libwebpmux1 libx11-dev libx11-doc libxau-dev libxcb1-dev libxdmcp-dev libxt-dev libxtables10 libxtables12 lksctp-tools mysql-client openms-common python-all python-all-dev python-pyfits python-pyrex python-support r-cran-domc r-cran-proto r-cran-tcltk2 sra-toolkit-libs0 tk-table x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 33m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', '-y', 'install', 'science-biology=1.7'] 33m31.7s INFO: Running scripts post_install 33m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_install_exceptions'] 33m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_install_exceptions'] 33m33.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 33m43.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 33m59.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', '-ac', '--ignore-obsolete'] 36m32.8s DUMP: debsums: missing file /srv/piuparts.debian.org/tmp/tmpz80oq68m/var/lib/metaphlan2-data/markers.fasta (from metaphlan2-data package) 36m32.8s DEBUG: Command failed (status=2), but ignoring error: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', '-ac', '--ignore-obsolete'] 36m32.8s ERROR: FAIL: debsums reports modifications inside the chroot: debsums: missing file /var/lib/metaphlan2-data/markers.fasta (from metaphlan2-data package) 36m32.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 36m32.8s DUMP: 0.15.6 36m32.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 36m32.8s INFO: Running adequate version 0.15.6 now. 36m32.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'science-biology'] 36m33.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'science-biology'] 36m33.0s INFO: Running scripts pre_remove 36m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 36m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 36m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 36m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 36m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 39m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 39m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 39m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 39m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 39m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 39m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_exceptions'] 39m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/pre_remove_exceptions'] 39m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 39m24.9s DUMP: install ok installed abacas abacas 1.3.1-3 install ok installed abyss abyss 2.0.2-2 install ok installed acedb-other acedb-other 4.9.39+dfsg.02-1 install ok installed acedb-other-belvu acedb-other-belvu 4.9.39+dfsg.02-1 install ok installed acedb-other-dotter acedb-other-dotter 4.9.39+dfsg.02-1 install ok installed acl acl 2.2.52-3+b1 install ok installed adapterremoval adapterremoval 2.2.0-1 install ok installed adduser adduser 3.115 install ok installed adun-core adun-core 0.81-9+b2 install ok installed adun.app adun.app 0.81-9+b2 install ok installed adwaita-icon-theme adwaita-icon-theme 3.22.0-1+deb9u1 install ok installed aegean aegean 0.15.2+dfsg-1 install ok installed aevol aevol 4.4-1+b4 install ok installed aglfn aglfn 1.7-3 install ok installed alien-hunter alien-hunter 1.7-5 install ok installed alter-sequence-alignment alter-sequence-alignment 1.3.3+dfsg-1 install ok installed altree altree 1.3.1-4+b2 install ok installed amap-align amap-align 2.2-6 install ok installed ampliconnoise ampliconnoise 1.29-6 install ok installed andi andi 0.10-2 install ok installed anfo anfo 0.98-5 install ok installed ant ant 1.9.9-1+deb9u1 install ok installed ant-contrib ant-contrib 1.0~b3+svn177-9 install ok installed ant-optional ant-optional 1.9.9-1+deb9u1 install ok installed apache2 apache2 2.4.25-3+deb9u9 install ok installed apache2-bin apache2-bin 2.4.25-3+deb9u9 install ok installed apache2-data apache2-data 2.4.25-3+deb9u9 install ok installed apache2-utils apache2-utils 2.4.25-3+deb9u9 install ok installed apbs apbs 1.4-1+b1 install ok installed apt apt 1.4.10 install ok installed aragorn aragorn 1.2.38-1 install ok installed arden arden 1.0-3 install ok installed ariba ariba 2.6.1+ds-1 install ok installed art-nextgen-simulation-tools art-nextgen-simulation-tools 20160605+dfsg-2 install ok installed artemis artemis 16.0.17+dfsg-1 install ok installed artfastqgenerator artfastqgenerator 0.0.20150519-2 install ok installed aspell aspell 0.60.7~20110707-3+b2 install ok installed aspell-en aspell-en 2016.11.20-0-0.1 install ok installed astro-tasks astro-tasks 1.0 install ok installed at-spi2-core at-spi2-core 2.22.0-6+deb9u1 install ok installed atac atac 0~20150903+r2013-3 install ok installed augustus augustus 3.2.3+dfsg-1 install ok installed augustus-data augustus-data 3.2.3+dfsg-1 install ok installed autoconf autoconf 2.69-10 install ok installed autodock autodock 4.2.6-3+b1 install ok installed autodock-vina autodock-vina 1.1.2-3+b6 install ok installed autogrid autogrid 4.2.6-3+b1 install ok installed automake automake 1:1.15-6 install ok installed autopoint autopoint 0.19.8.1-2+deb9u1 install ok installed autotools-dev autotools-dev 20161112.1 install ok installed axe-demultiplexer axe-demultiplexer 0.3.2+dfsg1-1 install ok installed ballview ballview 1.4.3~beta1-3 install ok installed bamtools bamtools 2.4.1+dfsg-1 install ok installed barrnap barrnap 0.7+dfsg-2 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bauble bauble 0.9.7-2.1 install ok installed bc bc 1.06.95-9+b3 install ok installed bcftools bcftools 1.3.1-1+b1 install ok installed beagle beagle 4.1~160727-86a+dfsg-1 install ok installed beast-mcmc beast-mcmc 1.8.4+dfsg.1-1 install ok installed beast2-mcmc beast2-mcmc 2.4.4+dfsg-1 install ok installed bedtools bedtools 2.26.0+dfsg-3 install ok installed beignet-opencl-icd:amd64 beignet-opencl-icd 1.3.0-4 install ok installed berkeley-express berkeley-express 1.5.1-3+b1 install ok installed binfmt-support binfmt-support 2.1.6-2 install ok installed binutils binutils 2.28-5 install ok installed bio-eagle bio-eagle 2.3-3 install ok installed bio-rainbow bio-rainbow 2.0.4-1+b1 install ok installed biomaj biomaj 1.2.3-11 install ok installed bioperl bioperl 1.7.1-2 install ok installed bioperl-run bioperl-run 1.7.1-3 install ok installed biosquid biosquid 1.9g+cvs20050121-7 install ok installed blasr blasr 5.3+0-1 install ok installed blast2 blast2 1:2.6.0-1 install ok installed blends-common blends-common 0.6.96 install ok installed blt blt 2.5.3+dfsg-3 install ok installed bowtie bowtie 1.1.2-6 install ok installed bowtie2 bowtie2 2.3.0-2 install ok installed boxshade boxshade 3.3.1-10 install ok installed brig brig 0.95+dfsg-1 install ok installed bsdmainutils bsdmainutils 9.0.12+nmu1 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed build-essential build-essential 12.3 install ok installed bwa bwa 0.7.15-2+deb9u1 install ok installed bzip2 bzip2 1.0.6-8.1 install ok installed bzip2-doc bzip2-doc 1.0.6-8.1 install ok installed ca-certificates ca-certificates 20200601~deb9u1 install ok installed ca-certificates-java ca-certificates-java 20170929~deb9u3 install ok installed cassiopee cassiopee 1.0.5-1+b1 install ok installed cd-hit cd-hit 4.6.6-2 install ok installed cdbfasta cdbfasta 0.99-20100722-3 install ok installed cdbs cdbs 0.4.150 install ok installed cgview cgview 0.0.20100111-2 install ok installed chimeraslayer chimeraslayer 20101212+dfsg1-1 install ok installed circlator circlator 1.4.1-1 install ok installed circos circos 0.69.4+dfsg-1 install ok installed circos-tools circos-tools 0.22-1 install ok installed clearcut clearcut 1.0.9-1+b1 install ok installed clonalframe clonalframe 1.2-5 install ok installed clustalo clustalo 1.2.4-1 install ok installed clustalw clustalw 2.1+lgpl-5 install ok installed clustalx clustalx 2.1+lgpl-5 install ok installed codonw codonw 1.4.4-3+b1 install ok installed colord colord 1.3.3-2 install ok installed colord-data colord-data 1.3.3-2 install ok installed concavity concavity 0.1+dfsg.1-1 install ok installed conservation-code conservation-code 20110309.0-5 install ok installed coreutils coreutils 8.26-3 install ok installed cpp cpp 4:6.3.0-4 install ok installed cpp-4.9 cpp-4.9 4.9.2-10+deb8u1 install ok installed cpp-6 cpp-6 6.3.0-18+deb9u1 install ok installed crac crac 2.5.0+dfsg-1 install ok installed critterding critterding 1.0-beta12.1-1.3+b1 install ok installed cron cron 3.0pl1-128+deb9u1 install ok installed curl curl 7.52.1-5+deb9u10 install ok installed cutadapt cutadapt 1.12-2 install ok installed cython cython 0.25.2-1 install ok installed daligner daligner 1.0+20161119-1 install ok installed dascrubber dascrubber 0~20160601-2 install ok installed dash dash 0.5.8-2.4 install ok installed datamash datamash 1.0.7-1 install ok installed dawg dawg 1.2-1+b1 install ok installed dazzdb dazzdb 1.0+20161112-2 install ok installed dbus dbus 1.10.32-0+deb9u1 install ok installed dbus-java-bin dbus-java-bin 2.8-6 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.26.0-2+b1 install ok installed dconf-service dconf-service 0.26.0-2+b1 install ok installed debconf debconf 1.5.61 install ok installed debconf-i18n debconf-i18n 1.5.61 install ok installed debhelper debhelper 10.2.5 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed debichem-tasks debichem-tasks 0.0.6 install ok installed default-jre default-jre 2:1.8-58+deb9u1 install ok installed default-jre-headless default-jre-headless 2:1.8-58+deb9u1 install ok installed default-mysql-client default-mysql-client 1.0.2 install ok installed dh-autoreconf dh-autoreconf 14 install ok installed dh-python dh-python 2.20170125 install ok installed dh-strip-nondeterminism dh-strip-nondeterminism 0.034-1 install ok installed dialign dialign 2.2.1-8 install ok installed dialign-tx dialign-tx 1.0.2-9 install ok installed dialign-tx-data dialign-tx-data 1.0.2-9 install ok installed dictionaries-common dictionaries-common 1.27.2 install ok installed diffutils diffutils 1:3.5-3 install ok installed dindel dindel 1.01+dfsg-4+b1 install ok installed dirmngr dirmngr 2.1.18-8~deb9u4 install ok installed discosnp discosnp 1.2.6-1+b2 install ok installed disulfinder disulfinder 1.2.11-6 install ok installed disulfinder-data disulfinder-data 1.2.11-6 install ok installed dmidecode dmidecode 3.0-4 install ok installed dmsetup dmsetup 2:1.02.137-2 install ok installed dnaclust dnaclust 3-4+b2 install ok installed docutils-common docutils-common 0.13.1+dfsg-2 install ok installed docutils-doc docutils-doc 0.13.1+dfsg-2 install ok installed dpkg dpkg 1.18.25 install ok installed dpkg-dev dpkg-dev 1.18.25 install ok installed dssp dssp 2.2.1-3+b2 install ok installed dvipng dvipng 1.14-2+b3 install ok installed dwgsim dwgsim 0.1.11-3+b1 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed ea-utils ea-utils 1.1.2+dfsg-4 install ok installed ecopcr ecopcr 0.5.0+dfsg-1 install ok installed edtsurf edtsurf 0.2009-4+b1 install ok installed eigensoft eigensoft 6.1.4+dfsg-1+b1 install ok installed emacsen-common emacsen-common 2.0.8 install ok installed embassy-domainatrix embassy-domainatrix 0.1.660-1 install ok installed embassy-domalign embassy-domalign 0.1.660-1 install ok installed embassy-domsearch embassy-domsearch 1:0.1.660-1 install ok installed emboss emboss 6.6.0+dfsg-6 install ok installed emboss-data emboss-data 6.6.0+dfsg-6 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-6 install ok installed exim4 exim4 4.89-2+deb9u7 install ok installed exim4-base exim4-base 4.89-2+deb9u7 install ok installed exim4-config exim4-config 4.89-2+deb9u7 install ok installed exim4-daemon-light exim4-daemon-light 4.89-2+deb9u7 install ok installed exonerate exonerate 2.4.0-2 install ok installed f2j f2j 0.8.1+dfsg-2 install ok installed fakeroot fakeroot 1.21-3.1 install ok installed falcon falcon 1.8.6-1.1 install ok installed fastahack fastahack 0.0+20160702-1+b1 install ok installed fastaq fastaq 3.14.0-1 install ok installed fastdnaml fastdnaml 1.2.2-11+b1 install ok installed fastjar fastjar 2:0.98-6+b1 install ok installed fastlink fastlink 4.1P-fix100+dfsg-1+b1 install ok installed fastml fastml 3.1-3 install ok installed fastqc fastqc 0.11.5+dfsg-6 install ok installed fastqtl fastqtl 2.184+dfsg-5 install ok installed fasttree fasttree 2.1.9-1 install ok installed fastx-toolkit fastx-toolkit 0.0.14-3 install ok installed ffindex ffindex 0.9.9.7-3 install ok installed figtree figtree 1.4.2+dfsg-2 install ok installed file file 1:5.30-1+deb9u3 install ok installed filo filo 1.1.0-3+b1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fitgcp fitgcp 0.0.20150429-1 install ok installed flexbar flexbar 2.50-2+b1 install ok installed fml-asm fml-asm 0.1-2+b1 install ok installed fontconfig fontconfig 2.11.0-6.7+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-cabin fonts-cabin 1.5-2 install ok installed fonts-circos-symbols fonts-circos-symbols 0.69.4+dfsg-1 install ok installed fonts-cmu fonts-cmu 0.7.0-3 install ok installed fonts-comfortaa fonts-comfortaa 2.003-1 install ok installed fonts-croscore fonts-croscore 20161116-1 install ok installed fonts-crosextra-caladea fonts-crosextra-caladea 20130214-1 install ok installed fonts-crosextra-carlito fonts-crosextra-carlito 20130920-1 install ok installed fonts-dejavu fonts-dejavu 2.37-1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-1 deinstall ok config-files fonts-droid fonts-droid 1:4.4.4r2-6 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-ebgaramond fonts-ebgaramond 0.016-1 install ok installed fonts-ebgaramond-extra fonts-ebgaramond-extra 0.016-1 install ok installed fonts-font-awesome fonts-font-awesome 4.7.0~dfsg-1 install ok installed fonts-freefont-otf fonts-freefont-otf 20120503-6 install ok installed fonts-freefont-ttf fonts-freefont-ttf 20120503-6 install ok installed fonts-gfs-artemisia fonts-gfs-artemisia 1.1-5 install ok installed fonts-gfs-complutum fonts-gfs-complutum 1.1-6 install ok installed fonts-gfs-didot fonts-gfs-didot 1.1-6 install ok installed fonts-gfs-neohellenic fonts-gfs-neohellenic 1.1-6 install ok installed fonts-gfs-olga fonts-gfs-olga 1.1-5 install ok installed fonts-gfs-solomos fonts-gfs-solomos 1.1-5 install ok installed fonts-inconsolata fonts-inconsolata 001.010-5 install ok installed fonts-junicode fonts-junicode 0.7.8-2 install ok installed fonts-lato fonts-lato 2.0-1 install ok installed fonts-liberation fonts-liberation 1:1.07.4-2 install ok installed fonts-linuxlibertine fonts-linuxlibertine 5.3.0-2 install ok installed fonts-lmodern fonts-lmodern 2.004.5-3 install ok installed fonts-lobster fonts-lobster 2.0-2 install ok installed fonts-lobstertwo fonts-lobstertwo 2.0-2 install ok installed fonts-lyx fonts-lyx 2.2.2-1 install ok installed fonts-mathjax fonts-mathjax 2.7.0-2 install ok installed fonts-noto-hinted fonts-noto-hinted 20161116-1 install ok installed fonts-noto-mono fonts-noto-mono 20161116-1 install ok installed fonts-oflb-asana-math fonts-oflb-asana-math 000.907-6 install ok installed fonts-roboto-hinted fonts-roboto-hinted 2:0~20160106-2 install ok installed fonts-sil-gentium fonts-sil-gentium 20081126:1.03-1 install ok installed fonts-sil-gentium-basic fonts-sil-gentium-basic 1.1-7 install ok installed fonts-sil-gentiumplus fonts-sil-gentiumplus 5.000-1 install ok installed fonts-sil-gentiumplus-compact fonts-sil-gentiumplus-compact 5.000-2 install ok installed fonts-stix fonts-stix 1.1.1-4 install ok installed fonts-texgyre fonts-texgyre 20160520-1 install ok installed fop fop 1:2.1-6 install ok installed freecontact freecontact 1.0.21-5 install ok installed freeglut3:amd64 freeglut3 2.8.1-3 install ok installed fsa fsa 1.15.9+dfsg-3 install ok installed fsm-lite fsm-lite 1.0-2 install ok installed g++ g++ 4:6.3.0-4 install ok installed g++-4.9 g++-4.9 4.9.2-10+deb8u1 install ok installed g++-6 g++-6 6.3.0-18+deb9u1 install ok installed gamgi gamgi 0.17.1-1+b1 install ok installed garli garli 2.1-1 install ok installed garlic garlic 1.6-1.1+b2 install ok installed gasic gasic 0.0.r19-1 install ok installed gawk gawk 1:4.1.4+dfsg-1 install ok installed gbrowse gbrowse 2.56+dfsg-2 install ok installed gcc gcc 4:6.3.0-4 install ok installed gcc-4.9 gcc-4.9 4.9.2-10+deb8u1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gcc-6 gcc-6 6.3.0-18+deb9u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gdpc gdpc 2.2.5-6 install ok installed genometools genometools 1.5.9+ds-4 install ok installed genometools-common genometools-common 1.5.9+ds-4 install ok installed gentle gentle 1.9+cvs20100605+dfsg1-5 install ok installed gettext gettext 0.19.8.1-2+deb9u1 install ok installed gettext-base gettext-base 0.19.8.1-2+deb9u1 install ok installed gff2aplot gff2aplot 2.0-8+b1 install ok installed gff2ps gff2ps 0.98d-5 install ok installed gfortran gfortran 4:6.3.0-4 install ok installed gfortran-4.9 gfortran-4.9 4.9.2-10+deb8u1 install ok installed gfortran-6 gfortran-6 6.3.0-18+deb9u1 install ok installed ghemical ghemical 3.0.0-2 install ok installed ghostscript ghostscript 9.26a~dfsg-0+deb9u6 install ok installed giira giira 0.0.20140625-1 install ok installed glam2 glam2 1064-3+b1 install ok installed glib-networking:amd64 glib-networking 2.50.0-1+deb9u1 install ok installed glib-networking-common glib-networking-common 2.50.0-1+deb9u1 install ok installed glib-networking-services glib-networking-services 2.50.0-1+deb9u1 install ok installed glpk-utils glpk-utils 4.61-1 install ok installed gnupg gnupg 2.1.18-8~deb9u4 install ok installed gnupg-agent gnupg-agent 2.1.18-8~deb9u4 install ok installed gnupg-l10n gnupg-l10n 2.1.18-8~deb9u4 install ok installed gnuplot gnuplot 5.0.5+dfsg1-6+deb9u1 install ok installed gnuplot-data gnuplot-data 5.0.5+dfsg1-6+deb9u1 install ok installed gnuplot-qt gnuplot-qt 5.0.5+dfsg1-6+deb9u1 install ok installed gnustep-back-common gnustep-back-common 0.25.0-2 install ok installed gnustep-back0.25 gnustep-back0.25 0.25.0-2 install ok installed gnustep-back0.25-cairo gnustep-back0.25-cairo 0.25.0-2 install ok installed gnustep-base-common gnustep-base-common 1.24.9-3.1+deb9u1 install ok installed gnustep-base-runtime gnustep-base-runtime 1.24.9-3.1+deb9u1 install ok installed gnustep-common gnustep-common 2.6.8-2.1 install ok installed gnustep-dl2-postgresql-adaptor gnustep-dl2-postgresql-adaptor 0.12.0-15.1 install ok installed gnustep-gui-common gnustep-gui-common 0.25.0-4 install ok installed gnustep-gui-runtime gnustep-gui-runtime 0.25.0-4+b1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed graphlan graphlan 1.1-2 install ok installed graphviz graphviz 2.38.0-17 install ok installed grep grep 2.27-2 install ok installed grinder grinder 0.5.4-1 install ok installed groff-base groff-base 1.22.3-9 install ok installed gromacs gromacs 2016.1-2 install ok installed gromacs-data gromacs-data 2016.1-2 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 3.22.0-1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.3 install ok installed gstreamer1.0-plugins-base:amd64 gstreamer1.0-plugins-base 1.10.4-1+deb9u1 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.22.11-1 install ok installed gubbins gubbins 2.2.0-1 install ok installed guile-2.0-libs:amd64 guile-2.0-libs 2.0.13+1-4 install ok installed gwama gwama 2.2.2+dfsg-1 install ok installed gzip gzip 1.6-5+b1 install ok installed harvest-tools harvest-tools 1.3-1 install ok installed hdf5-tools hdf5-tools 1.10.0-patch1+docs-3+deb9u1 install ok installed hhsuite hhsuite 3.0~beta2+dfsg-3 install ok installed hhsuite-data hhsuite-data 3.0~beta2+dfsg-3 install ok installed hicolor-icon-theme hicolor-icon-theme 0.15-1 install ok installed hilive hilive 0.3-2 install ok installed hisat2 hisat2 2.0.5-1 install ok installed hmmer hmmer 3.1b2+dfsg-5 install ok installed hmmer2 hmmer2 2.3.2-13 install ok installed hostname hostname 3.18+b1 install ok installed hyphy-common hyphy-common 2.2.7+dfsg-1 install ok installed hyphy-mpi hyphy-mpi 2.2.7+dfsg-1+b2 install ok installed hyphygui hyphygui 2.2.7+dfsg-1+b2 install ok installed icc-profiles-free icc-profiles-free 2.0.1+dfsg-1 install ok installed icedtea-netx-common icedtea-netx-common 1.6.2-3.1+deb9u1 install ok installed icu-devtools icu-devtools 57.1-6+deb9u4 install ok installed idba idba 1.1.3-1 install ok installed ifupdown ifupdown 0.8.19 install ok installed imagemagick imagemagick 8:6.9.7.4+dfsg-11+deb9u8 install ok installed imagemagick-6-common imagemagick-6-common 8:6.9.7.4+dfsg-11+deb9u8 install ok installed imagemagick-6.q16 imagemagick-6.q16 8:6.9.7.4+dfsg-11+deb9u8 install ok installed imagemagick-common imagemagick-common 8:6.9.7.4+dfsg-11+deb9u8 install ok installed indelible indelible 1.03-2+b1 install ok installed infernal infernal 1.1.2-1 install ok installed init init 1.48 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed initscripts initscripts 2.88dsf-59.9 install ok installed insserv insserv 1.14.0-5.4+b1 install ok installed intltool-debian intltool-debian 0.35.0+20060710.4 install ok installed ipig ipig 0.0.r5-2 install ok installed iproute2 iproute2 4.9.0-1+deb9u1 install ok installed ipython ipython 5.1.0-3 install ok installed iqtree iqtree 1.5.3+dfsg-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.5-3+deb9u1 install ok installed isc-dhcp-common isc-dhcp-common 4.3.5-3+deb9u1 install ok installed iso-codes iso-codes 3.75-1 install ok installed isympy isympy 1.0-3 install ok installed isympy-common isympy-common 1.0-3 install ok installed iva iva 1.0.8+ds-1 install ok installed jaligner jaligner 1.0+dfsg-4 deinstall ok config-files jalview jalview 2.7.dfsg-4 install ok installed jarwrapper jarwrapper 0.59 install ok installed java-common java-common 0.58+deb9u1 install ok installed java-wrappers java-wrappers 0.1.28 install ok installed javahelp2 javahelp2 2.0.05.ds1-9 install ok installed javascript-common javascript-common 11 install ok installed jellyfish jellyfish 2.2.6-1+b1 install ok installed jemboss jemboss 6.6.0+dfsg-6 install ok installed jmodeltest jmodeltest 2.1.10+dfsg-5 install ok installed jmol jmol 14.6.4+2016.11.05+dfsg1-3 install ok installed jmol-applet jmol-applet 14.6.4+2016.11.05+dfsg1-3 install ok installed junit junit 3.8.2-8 install ok installed junit4 junit4 4.12-4 install ok installed kalign kalign 1:2.03+20110620-3 install ok installed khmer:amd64 khmer 2.0+dfsg-10 install ok installed khmer-common khmer-common 2.0+dfsg-10 install ok installed kineticstools kineticstools 0.6.1+20161222-1 install ok installed kineticstools-data kineticstools-data 0.6.1+20161222-1 install ok installed king king 2.23.161103+dfsg1-1 install ok installed king-probe king-probe 2.13.110909-2 install ok installed kissplice kissplice 2.4.0-p1-1 install ok installed kmc kmc 2.3+dfsg-5 install ok installed kmer kmer 0~20150903+r2013-3 install ok installed kraken kraken 0.10.5~beta-2+b1 install ok installed krb5-locales krb5-locales 1.15-1+deb9u1 install ok installed ksh ksh 93u+20120801-3.1 install ok installed lambda-align lambda-align 1.0.1-2 install ok installed laptop-detect laptop-detect 0.13.8 install ok installed last-align last-align 830-1 install ok installed leaff leaff 0~20150903+r2013-3 install ok installed lefse lefse 1.0+20160802-1 install ok installed libace-perl libace-perl 1.92-4+b1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libaec0:amd64 libaec0 0.3.2-1 install ok installed libai-fann-perl libai-fann-perl 0.10-3+b2 install ok installed libaio1:amd64 libaio1 0.3.110-3 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.10-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-4+b2 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-3 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-3 install ok installed libamd2:amd64 libamd2 1:4.5.4-1 install ok installed libamd2.3.1:amd64 libamd2.3.1 1:4.2.1-3 install ok installed libanfo0 libanfo0 0.98-5 install ok installed libann0 libann0 1.1.2+doc-6 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-2 install ok installed libanyevent-http-perl libanyevent-http-perl 2.23-1 install ok installed libanyevent-perl libanyevent-perl 7.130-2 install ok installed libao-common libao-common 1.2.2-1 install ok installed libao4 libao4 1.2.2-1 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-1 install ok installed libapache-mime4j-java libapache-mime4j-java 0.7.2-4 install ok installed libapache-pom-java libapache-pom-java 10-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.10-2+deb9u1 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-1 install ok installed libapparmor1:amd64 libapparmor1 2.11.0-3+deb9u2 install ok installed libapr1:amd64 libapr1 1.5.2-5 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-3 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-3 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-3 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libarchive-extract-perl libarchive-extract-perl 0.80-1 install ok installed libarchive-zip-perl libarchive-zip-perl 1.59-1+deb9u1 install ok installed libarchive13:amd64 libarchive13 3.2.2-2+deb9u2 install ok installed libargtable2-0 libargtable2-0 13-1 install ok installed libarmadillo7 libarmadillo7 1:7.600.2+dfsg-2 install ok installed libarpack2 libarpack2 3.4.0-1+b1 install ok installed libarray-compare-perl libarray-compare-perl 3.0.0-1 install ok installed libarray-utils-perl libarray-utils-perl 0.5-1 install ok installed libart-2.0-2:amd64 libart-2.0-2 2.3.21-2 install ok installed libasan1:amd64 libasan1 4.9.2-10+deb8u1 install ok installed libasan3:amd64 libasan3 6.3.0-18+deb9u1 install ok installed libasm-java libasm-java 5.2-2 install ok installed libasound2:amd64 libasound2 1.1.3-5 install ok installed libasound2-data libasound2-data 1.1.3-5 install ok installed libaspell15:amd64 libaspell15 0.60.7~20110707-3+b2 install ok installed libasprintf-dev:amd64 libasprintf-dev 0.19.8.1-2+deb9u1 install ok installed libasprintf0v5:amd64 libasprintf0v5 0.19.8.1-2+deb9u1 install ok installed libassuan0:amd64 libassuan0 2.4.3-2 install ok installed libasync-interrupt-perl libasync-interrupt-perl 1.21-1+b2 install ok installed libasyncns0:amd64 libasyncns0 0.8-6 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-2 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.22.0-2 install ok installed libatk-wrapper-java libatk-wrapper-java 0.33.3-13+deb9u1 install ok installed libatk-wrapper-java-jni:amd64 libatk-wrapper-java-jni 0.33.3-13+deb9u1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.22.0-1 install ok installed libatk1.0-data libatk1.0-data 2.22.0-1 install ok installed libatlas3-base libatlas3-base 3.10.3-1+b1 install ok installed libatm1:amd64 libatm1 1:2.5.1-2 install ok installed libatomic1:amd64 libatomic1 6.3.0-18+deb9u1 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.22.0-6+deb9u1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudio2:amd64 libaudio2 1.9.4-5+b1 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.32-2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.32-2 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.32-2 install ok installed libavalon-framework-java libavalon-framework-java 4.2.0-9 install ok installed libaxis-java libaxis-java 1.4-25 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.21-1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.19-3+b1 install ok installed libball1.4 libball1.4 1.4.3~beta1-3 install ok installed libball1.4-data libball1.4-data 1.4.3~beta1-3 install ok installed libballview1.4 libballview1.4 1.4.3~beta1-3 install ok installed libbambamc0 libbambamc0 0.0.50-1 install ok installed libbamtools2.3.0 libbamtools2.3.0 2.3.0+dfsg-2 install ok installed libbamtools2.4.0 libbamtools2.4.0 2.4.1+dfsg-1 install ok installed libbareword-filehandles-perl libbareword-filehandles-perl 0.004-1+b1 install ok installed libbatik-java libbatik-java 1.8-4+deb9u2 install ok installed libbcmail-java libbcmail-java 1.56-1+deb9u2 install ok installed libbcpkix-java libbcpkix-java 1.56-1+deb9u2 install ok installed libbcprov-java libbcprov-java 1.56-1+deb9u2 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.720-1 install ok installed libbio-coordinate-perl libbio-coordinate-perl 1.7.1-1 install ok installed libbio-graphics-perl libbio-graphics-perl 2.40-1 install ok installed libbio-perl-perl libbio-perl-perl 1.7.1-2 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.1-3 install ok installed libbio-scf-perl libbio-scf-perl 1.03-3 install ok installed libbiojava-java libbiojava-java 1:1.7.1-5 install ok installed libbiojava1.7-java libbiojava1.7-java 1:1.7.1-5 install ok installed libbit-vector-perl libbit-vector-perl 7.4-1+b2 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas-dev libblas-dev 3.7.0-2 install ok installed libblas3 libblas3 3.7.0-2 install ok installed libblasr:amd64 libblasr 0~20161219-1 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libblosc1 libblosc1 1.11.1+ds2-1 install ok installed libboost-atomic1.62.0:amd64 libboost-atomic1.62.0 1.62.0+dfsg-4 install ok installed libboost-chrono1.55.0:amd64 libboost-chrono1.55.0 1.55.0+dfsg-3 install ok installed libboost-chrono1.62.0:amd64 libboost-chrono1.62.0 1.62.0+dfsg-4 deinstall ok config-files libboost-date-time1.55.0:amd64 libboost-date-time1.55.0 1.55.0+dfsg-3 install ok installed libboost-date-time1.62.0:amd64 libboost-date-time1.62.0 1.62.0+dfsg-4 install ok installed libboost-filesystem1.55.0:amd64 libboost-filesystem1.55.0 1.55.0+dfsg-3 install ok installed libboost-filesystem1.62.0:amd64 libboost-filesystem1.62.0 1.62.0+dfsg-4 install ok installed libboost-iostreams1.55.0:amd64 libboost-iostreams1.55.0 1.55.0+dfsg-3 install ok installed libboost-iostreams1.62.0:amd64 libboost-iostreams1.62.0 1.62.0+dfsg-4 install ok installed libboost-math1.55.0:amd64 libboost-math1.55.0 1.55.0+dfsg-3 install ok installed libboost-math1.62.0:amd64 libboost-math1.62.0 1.62.0+dfsg-4 deinstall ok config-files libboost-mpi1.55.0 libboost-mpi1.55.0 1.55.0+dfsg-3 install ok installed libboost-mpi1.62.0 libboost-mpi1.62.0 1.62.0+dfsg-4 install ok installed libboost-program-options1.55.0:amd64 libboost-program-options1.55.0 1.55.0+dfsg-3 install ok installed libboost-program-options1.62.0:amd64 libboost-program-options1.62.0 1.62.0+dfsg-4 install ok installed libboost-random1.55.0:amd64 libboost-random1.55.0 1.55.0+dfsg-3 install ok installed libboost-random1.62.0:amd64 libboost-random1.62.0 1.62.0+dfsg-4 install ok installed libboost-regex1.55.0:amd64 libboost-regex1.55.0 1.55.0+dfsg-3 install ok installed libboost-regex1.62.0:amd64 libboost-regex1.62.0 1.62.0+dfsg-4 install ok installed libboost-serialization1.55.0:amd64 libboost-serialization1.55.0 1.55.0+dfsg-3 install ok installed libboost-serialization1.62.0:amd64 libboost-serialization1.62.0 1.62.0+dfsg-4 install ok installed libboost-system1.55.0:amd64 libboost-system1.55.0 1.55.0+dfsg-3 install ok installed libboost-system1.62.0:amd64 libboost-system1.62.0 1.62.0+dfsg-4 install ok installed libboost-thread1.55.0:amd64 libboost-thread1.55.0 1.55.0+dfsg-3 install ok installed libboost-thread1.62.0:amd64 libboost-thread1.62.0 1.62.0+dfsg-4 install ok installed libboost-timer1.55.0:amd64 libboost-timer1.55.0 1.55.0+dfsg-3 install ok installed libboost-timer1.62.0:amd64 libboost-timer1.62.0 1.62.0+dfsg-4 install ok installed libbpp-core2v5:amd64 libbpp-core2v5 2.2.0-3 install ok installed libbpp-phyl-omics1v5 libbpp-phyl-omics1v5 2.2.0-2 install ok installed libbpp-phyl9v5:amd64 libbpp-phyl9v5 2.2.0-1+b1 install ok installed libbpp-seq-omics1v5:amd64 libbpp-seq-omics1v5 2.2.0-1 install ok installed libbpp-seq9v5:amd64 libbpp-seq9v5 2.2.0-1+b1 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2910-1+b1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1 install ok installed libbsf-java libbsf-java 1:2.4.0-5 install ok installed libbytecode-java libbytecode-java 0.92.svn.20090106-2 install ok installed libbytes-random-secure-perl libbytes-random-secure-perl 0.28-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc-dev-bin libc-dev-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libc6-dev:amd64 libc6-dev 2.24-11+deb9u4 install ok installed libcaca0:amd64 libcaca0 0.99.beta19-2.1~deb9u1 install ok installed libcache-cache-perl libcache-cache-perl 1.08-2 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.14.8-1 install ok installed libcairo2:amd64 libcairo2 1.14.8-1 install ok installed libcanberra-gtk3-0:amd64 libcanberra-gtk3-0 0.30-3 install ok installed libcanberra-gtk3-module:amd64 libcanberra-gtk3-module 0.30-3 install ok installed libcanberra0:amd64 libcanberra0 0.30-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcap2:amd64 libcap2 1:2.25-1 install ok installed libcap2-bin libcap2-bin 1:2.25-1 install ok installed libcapnp-0.5.3 libcapnp-0.5.3 0.5.3-2 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.44-1 install ok installed libcarp-always-perl libcarp-always-perl 0.12-1 install ok installed libcarp-clan-perl libcarp-clan-perl 6.06-1 deinstall ok config-files libcassie1 libcassie1 1.0.1+dfsg-3+b1 install ok installed libcassie1v5 libcassie1v5 1.0.5-1+b1 install ok installed libcastor-core-java libcastor-core-java 1.3.2-4 install ok installed libcastor-xml-java libcastor-xml-java 1.3.2-4 install ok installed libcbf0:amd64 libcbf0 0.9.2.2-1+b1 install ok installed libcc1-0:amd64 libcc1-0 6.3.0-18+deb9u1 install ok installed libcdparanoia0:amd64 libcdparanoia0 3.10.2+debian-11 install ok installed libcdt5 libcdt5 2.38.0-17 install ok installed libcfitsio2:amd64 libcfitsio2 3.370-2+deb8u1 install ok installed libcfitsio5:amd64 libcfitsio5 3.410-1 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.12-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.35-1 install ok installed libcgi-session-perl libcgi-session-perl 4.48-3 install ok installed libcgraph6 libcgraph6 2.38.0-17 install ok installed libcilkrts5:amd64 libcilkrts5 6.3.0-18+deb9u1 install ok installed libclass-c3-perl libclass-c3-perl 0.32-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.14-1+b1 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-2 install ok installed libclass-inspector-perl libclass-inspector-perl 1.31-1 install ok installed libclass-load-perl libclass-load-perl 0.23-1 install ok installed libclass-load-xs-perl libclass-load-xs-perl 0.09-2+b1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.12-1 install ok installed libclass-tiny-perl libclass-tiny-perl 1.006-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-2+b7 install ok installed libclone-perl libclone-perl 0.38-2+b1 install ok installed libcloog-isl4:amd64 libcloog-isl4 0.18.4-1+b1 install ok installed libcneartree5:amd64 libcneartree5 3.1.1-2.1+b2 install ok installed libcofoja-java libcofoja-java 1.3-1 install ok installed libcolamd2:amd64 libcolamd2 1:4.5.4-1 install ok installed libcolamd2.8.0:amd64 libcolamd2.8.0 1:4.2.1-3 install ok installed libcolord2:amd64 libcolord2 1.3.3-2 install ok installed libcolorhug2:amd64 libcolorhug2 1.3.3-2 install ok installed libcolt-free-java libcolt-free-java 1.2.0+dfsg-4 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libcommon-sense-perl libcommon-sense-perl 3.74-2 install ok installed libcommons-cli-java libcommons-cli-java 1.3.1-3 install ok installed libcommons-codec-java libcommons-codec-java 1.10-1 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.2-1 install ok installed libcommons-collections4-java libcommons-collections4-java 4.1-1 install ok installed libcommons-compress-java libcommons-compress-java 1.13-1 install ok installed libcommons-configuration-java libcommons-configuration-java 1.10-4 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-5 install ok installed libcommons-discovery-java libcommons-discovery-java 0.5-3 install ok installed libcommons-httpclient-java libcommons-httpclient-java 3.1-12 install ok installed libcommons-io-java libcommons-io-java 2.5-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-3 install ok installed libcommons-lang-java libcommons-lang-java 2.6-6 install ok installed libcommons-lang3-java libcommons-lang3-java 3.5-1 install ok installed libcommons-logging-java libcommons-logging-java 1.2-1 install ok installed libcommons-math-java libcommons-math-java 2.2-6 install ok installed libcommons-math3-java libcommons-math3-java 3.6.1-2 install ok installed libcommons-net-java libcommons-net-java 3.5-1 install ok installed libcommons-net2-java libcommons-net2-java 2.2-2 install ok installed libcommons-parent-java libcommons-parent-java 39-3 install ok installed libcommons-pool-java libcommons-pool-java 1.6-3 install ok installed libconcurrent-java libconcurrent-java 1.3.4-4 install ok installed libconfig-general-perl libconfig-general-perl 2.63-1 install ok installed libconfig-inifiles-perl libconfig-inifiles-perl 2.94-1 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.78-1+b1 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libcpan-changes-perl libcpan-changes-perl 0.400002-1 install ok installed libcpan-meta-perl libcpan-meta-perl 2.150010-1 install ok installed libcqrlib2:amd64 libcqrlib2 1.1.2-2.1+b2 install ok installed libcr0 libcr0 0.8.5-2.3+b1 install ok installed libcroco3:amd64 libcroco3 0.6.11-3 install ok installed libcrypt-random-seed-perl libcrypt-random-seed-perl 0.03-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-2 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.73.04-2 install ok installed libcrypto++6 libcrypto++6 5.6.4-7 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.7.3-4 install ok installed libcups2:amd64 libcups2 2.2.1-8+deb9u6 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.11.6-3+deb9u1 install ok installed libcupsimage2:amd64 libcupsimage2 2.2.1-8+deb9u6 install ok installed libcurl3:amd64 libcurl3 7.52.1-5+deb9u10 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.52.1-5+deb9u10 install ok installed libcvector2:amd64 libcvector2 1.0.3.1-1.1+b2 install ok installed libdata-dumper-simple-perl libdata-dumper-simple-perl 0.11-5 install ok installed libdata-optlist-perl libdata-optlist-perl 0.110-1 install ok installed libdata-perl-perl libdata-perl-perl 0.002009-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdate-calc-perl libdate-calc-perl 6.4-1 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.4-1+b2 install ok installed libdate-manip-perl libdate-manip-perl 6.57-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.10-4+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.041-2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.5.3-1+b2 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.54-1 install ok installed libdbi-perl libdbi-perl 1.636-1+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.10.32-0+deb9u1 install ok installed libdbus-java libdbus-java 2.8-6 install ok installed libdconf1:amd64 libdconf1 0.26.0-2+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-1+b4 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.14-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-1+b4 install ok installed libdevel-overloadinfo-perl libdevel-overloadinfo-perl 0.004-1 install ok installed libdevel-partialdump-perl libdevel-partialdump-perl 0.18-2 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0200-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.17-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.137-2 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdirectfb-1.2-9:amd64 libdirectfb-1.2-9 1.2.10.0-8+deb9u1 install ok installed libdisorder0:amd64 libdisorder0 0.0.2-1 install ok installed libdist-checkconflicts-perl libdist-checkconflicts-perl 0.11-1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-2 install ok installed libdjvulibre-text libdjvulibre-text 3.5.27.1-7 install ok installed libdjvulibre21:amd64 libdjvulibre21 3.5.27.1-7 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libdns-export162 libdns-export162 1:9.10.3.dfsg.P4-12.3+deb9u6 install ok installed libdom4j-java libdom4j-java 1.6.1+dfsg.3-2+deb9u1 install ok installed libdouble-conversion1:amd64 libdouble-conversion1 2.0.1-4 install ok installed libdpkg-perl libdpkg-perl 1.18.25 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.74-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.74-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.74-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.74-1 install ok installed libdrm2:amd64 libdrm2 2.4.74-1 install ok installed libdsdp-5.8gf libdsdp-5.8gf 5.8-9.4 install ok installed libecpg6:amd64 libecpg6 9.6.17-0+deb9u1 install ok installed libedit2:amd64 libedit2 3.1-20160903-3 install ok installed libegl1-mesa:amd64 libegl1-mesa 13.0.6-1+b2 install ok installed libelf1:amd64 libelf1 0.168-1 install ok installed libelfg0:amd64 libelfg0 0.8.13-5 install ok installed libelk0 libelk0 3.99.8-4.1+b1 install ok installed libemail-date-format-perl libemail-date-format-perl 1.005-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libenv-path-perl libenv-path-perl 0.19-1 install ok installed libepoxy0:amd64 libepoxy0 1.3.1-2 install ok installed liberfa1:amd64 liberfa1 1.3.0-2 install ok installed liberror-perl liberror-perl 0.17024-1 install ok installed libev-perl libev-perl 4.22-1+b1 install ok installed libeval-closure-perl libeval-closure-perl 0.14-1 install ok installed libevdev2:amd64 libevdev2 1.5.6+dfsg-1 install ok installed libexception-class-perl libexception-class-perl 1.42-1 install ok installed libexif12:amd64 libexif12 0.6.21-2+deb9u4 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u3 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.2.0-2+deb9u3 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.042-1 install ok installed libf2j-java libf2j-java 0.8.1+dfsg-2 install ok installed libfabric1 libfabric1 1.4.0-1 install ok installed libfakeroot:amd64 libfakeroot 1.21-3.1 install ok installed libfann2:amd64 libfann2 2.2.0+ds-3 install ok installed libfastahack0 libfastahack0 0.0+20160702-1+b1 install ok installed libfastutil-java libfastutil-java 7.0.13-1 install ok installed libfcgi-perl libfcgi-perl 0.78-2 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libffindex0 libffindex0 0.9.9.7-3 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.5-3 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.5-3 install ok installed libfile-basedir-perl libfile-basedir-perl 0.07-1 install ok installed libfile-chdir-perl libfile-chdir-perl 0.1008-1 install ok installed libfile-copy-link-perl libfile-copy-link-perl 0.140-2 install ok installed libfile-copy-recursive-perl libfile-copy-recursive-perl 0.38-1 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.22-1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-3+b2 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-1 install ok installed libfile-grep-perl libfile-grep-perl 0.02-1 install ok installed libfile-homedir-perl libfile-homedir-perl 1.00-1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.27-1 install ok installed libfile-slurp-perl libfile-slurp-perl 9999.19-6 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.003-1 install ok installed libfile-slurper-perl libfile-slurper-perl 0.009-1 install ok installed libfile-stripnondeterminism-perl libfile-stripnondeterminism-perl 0.034-1 install ok installed libfile-which-perl libfile-which-perl 1.21-1 install ok installed libfindbin-libs-perl libfindbin-libs-perl 2.150-1 install ok installed libflac8:amd64 libflac8 1.3.2-1 install ok installed libflite1:amd64 libflite1 2.0.0-release-3+b1 install ok installed libfltk-images1.3:amd64 libfltk-images1.3 1.3.4-4 install ok installed libfltk1.3:amd64 libfltk1.3 1.3.4-4 install ok installed libfml0 libfml0 0.1-2+b1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libfont-ttf-perl libfont-ttf-perl 1.06-1 install ok installed libfontbox-java libfontbox-java 1:1.8.12-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.3-1+b2 install ok installed libfop-java libfop-java 1:2.1-6 deinstall ok config-files libfreecontact0 libfreecontact0 1.0.21-3+b1 install ok installed libfreecontact0v5:amd64 libfreecontact0v5 1.0.21-5 install ok installed libfreehep-export-java libfreehep-export-java 2.1.1-3 install ok installed libfreehep-graphics2d-java libfreehep-graphics2d-java 2.1.1-5 install ok installed libfreehep-graphicsio-emf-java libfreehep-graphicsio-emf-java 2.1.1-emfplus+dfsg1-3 install ok installed libfreehep-graphicsio-java libfreehep-graphicsio-java 2.1.1-4 install ok installed libfreehep-graphicsio-pdf-java libfreehep-graphicsio-pdf-java 2.1.1+dfsg-2 install ok installed libfreehep-graphicsio-ps-java libfreehep-graphicsio-ps-java 2.1.1-2 install ok installed libfreehep-graphicsio-svg-java libfreehep-graphicsio-svg-java 2.1.1-4 install ok installed libfreehep-graphicsio-swf-java libfreehep-graphicsio-swf-java 2.1.1+dfsg-2 install ok installed libfreehep-graphicsio-tests-java libfreehep-graphicsio-tests-java 2.1.1+dfsg1-4 install ok installed libfreehep-io-java libfreehep-io-java 2.0.2-5 install ok installed libfreehep-swing-java libfreehep-swing-java 2.0.3-4 install ok installed libfreehep-util-java libfreehep-util-java 2.0.2-6 install ok installed libfreehep-xml-java libfreehep-xml-java 2.1.2+dfsg1-4 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u1 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-1 install ok installed libfribidi0:amd64 libfribidi0 0.19.7-1+deb9u1 install ok installed libftgl2:amd64 libftgl2 2.1.3~rc5-4+nmu1.1 install ok installed libfuse2:amd64 libfuse2 2.9.7-1+deb9u2 install ok installed libg20 libg20 0.72-6 install ok installed libgail-common:amd64 libgail-common 2.24.31-2 install ok installed libgail18:amd64 libgail18 2.24.31-2 install ok installed libgbm1:amd64 libgbm1 13.0.6-1+b2 install ok installed libgc1c2:amd64 libgc1c2 1:7.4.2-8 install ok installed libgcc-4.9-dev:amd64 libgcc-4.9-dev 4.9.2-10+deb8u1 install ok installed libgcc-6-dev:amd64 libgcc-6-dev 6.3.0-18+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgd-graph-perl libgd-graph-perl 1.48-2 install ok installed libgd-perl libgd-perl 2.53-3 install ok installed libgd-svg-perl libgd-svg-perl 0.33-1 install ok installed libgd-text-perl libgd-text-perl 0.86-9 install ok installed libgd3:amd64 libgd3 2.2.4-2+deb9u5 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgdk-pixbuf2.0-0:amd64 libgdk-pixbuf2.0-0 2.36.5-2+deb9u2 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.36.5-2+deb9u2 install ok installed libgenome-1.3-0v5:amd64 libgenome-1.3-0v5 1.3.1-9 install ok installed libgenometools0 libgenometools0 1.5.9+ds-4 install ok installed libgetopt-euclid-perl libgetopt-euclid-perl 0.4.5-2 install ok installed libgetopt-java libgetopt-java 1.0.14+dfsg-3 install ok installed libgetopt-long-descriptive-perl libgetopt-long-descriptive-perl 0.100-1 install ok installed libgetopt-simple-perl libgetopt-simple-perl 1.52-5 install ok installed libgettextpo-dev:amd64 libgettextpo-dev 0.19.8.1-2+deb9u1 install ok installed libgettextpo0:amd64 libgettextpo0 0.19.8.1-2+deb9u1 deinstall ok config-files libgflags2 libgflags2 2.0-2.1 install ok installed libgflags2v5 libgflags2v5 2.1.2-4 install ok installed libgfortran-4.9-dev:amd64 libgfortran-4.9-dev 4.9.2-10+deb8u1 install ok installed libgfortran-6-dev:amd64 libgfortran-6-dev 6.3.0-18+deb9u1 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libghemical-data libghemical-data 3.0.0-4.1 install ok installed libghemical5v5 libghemical5v5 3.0.0-4.1+b3 install ok installed libgif4:amd64 libgif4 4.1.6-11+deb8u1 install ok installed libgif7:amd64 libgif7 5.1.4-0.4 install ok installed libgkarrays1 libgkarrays1 2.1.0+dfsg-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 13.0.6-1+b2 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 13.0.6-1+b2 install ok installed libglade2-0:amd64 libglade2-0 1:2.6.4-2 install ok installed libglapi-mesa:amd64 libglapi-mesa 13.0.6-1+b2 install ok installed libglew1.10:amd64 libglew1.10 1.10.0-3 install ok installed libglew2.0:amd64 libglew2.0 2.0.0-3+b1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.50.3-2+deb9u2 install ok installed libglib2.0-data libglib2.0-data 2.50.3-2+deb9u2 install ok installed libglpk-java libglpk-java 1.7.0-1 install ok installed libglpk36:amd64 libglpk36 4.55-1 install ok installed libglpk40:amd64 libglpk40 4.61-1 install ok installed libglu1-mesa:amd64 libglu1-mesa 9.0.0-2.1 install ok installed libgmp-dev:amd64 libgmp-dev 2:6.1.2+dfsg-1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1 install ok installed libgmpxx4ldbl:amd64 libgmpxx4ldbl 2:6.1.2+dfsg-1 install ok installed libgnuinet-java libgnuinet-java 1.1.2-2 install ok installed libgnumail-java libgnumail-java 1.1.2-10 install ok installed libgnustep-base1.24 libgnustep-base1.24 1.24.9-3.1+deb9u1 install ok installed libgnustep-dl2-0d libgnustep-dl2-0d 0.12.0-15.1 deinstall ok config-files libgnustep-gui0.24 libgnustep-gui0.24 0.24.0-3 install ok installed libgnustep-gui0.25 libgnustep-gui0.25 0.25.0-4+b1 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u5 install ok installed libgo-perl libgo-perl 0.15-5 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 deinstall ok config-files libgoogle-glog0 libgoogle-glog0 0.3.3-2 install ok installed libgoogle-glog0v5 libgoogle-glog0v5 0.3.4-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgphoto2-6:amd64 libgphoto2-6 2.5.12-1 install ok installed libgphoto2-l10n libgphoto2-l10n 2.5.12-1 install ok installed libgphoto2-port10:amd64 libgphoto2-port10 2.5.4-1.1+b2 install ok installed libgphoto2-port12:amd64 libgphoto2-port12 2.5.12-1 install ok installed libgraph-perl libgraph-perl 1:0.96-2 install ok installed libgraph-readwrite-perl libgraph-readwrite-perl 2.09-1 install ok installed libgraphics-colornames-perl libgraphics-colornames-perl 2.11-7.1 install ok installed libgraphics-colorobject-perl libgraphics-colorobject-perl 0.5.0-7.1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1 install ok installed libgraphviz-perl libgraphviz-perl 2.22-1 install ok installed libgromacs2 libgromacs2 2016.1-2 install ok installed libgs9:amd64 libgs9 9.26a~dfsg-0+deb9u6 install ok installed libgs9-common libgs9-common 9.26a~dfsg-0+deb9u6 install ok installed libgsasl7 libgsasl7 1.8.0-8+b2 install ok installed libgsl-dev libgsl-dev 2.3+dfsg-1 deinstall ok config-files libgsl0ldbl libgsl0ldbl 1.16+dfsg-2 install ok installed libgsl2:amd64 libgsl2 2.3+dfsg-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.15-1+deb9u1 install ok installed libgstreamer-plugins-base1.0-0:amd64 libgstreamer-plugins-base1.0-0 1.10.4-1+deb9u1 install ok installed libgstreamer1.0-0:amd64 libgstreamer1.0-0 1.10.4-1 deinstall ok config-files libgtextutils0:amd64 libgtextutils0 0.7-2 install ok installed libgtextutils0v5:amd64 libgtextutils0v5 0.7-4 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.22.11-1 install ok installed libgtk-3-bin libgtk-3-bin 3.22.11-1 install ok installed libgtk-3-common libgtk-3-common 3.22.11-1 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.31-2 install ok installed libgtk2.0-bin libgtk2.0-bin 2.24.31-2 install ok installed libgtk2.0-common libgtk2.0-common 2.24.31-2 install ok installed libgtkglext1 libgtkglext1 1.2.0-4 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4 install ok installed libguard-perl libguard-perl 1.023-1+b2 install ok installed libguava-java libguava-java 19.0-1 install ok installed libgudev-1.0-0:amd64 libgudev-1.0-0 230-3 install ok installed libgusb2:amd64 libgusb2 0.2.9-1+b1 install ok installed libgvc6 libgvc6 2.38.0-17 install ok installed libgvpr2 libgvpr2 2.38.0-17 install ok installed libgzstream0 libgzstream0 1.5+dfsg-2 install ok installed libhamcrest-java libhamcrest-java 1.3-6 install ok installed libharfbuzz-icu0:amd64 libharfbuzz-icu0 1.4.2-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 1.4.2-1 install ok installed libhat-trie0:amd64 libhat-trie0 0.0~git25f9e946-2 install ok installed libhdf5-100:amd64 libhdf5-100 1.10.0-patch1+docs-3+deb9u1 install ok installed libhdf5-8:amd64 libhdf5-8 1.8.13+docs-15+deb8u1 install ok installed libhdf5-cpp-100:amd64 libhdf5-cpp-100 1.10.0-patch1+docs-3+deb9u1 install ok installed libheap-perl libheap-perl 0.80-3 install ok installed libhmsbeagle-java libhmsbeagle-java 2.1.2+20160831-5 deinstall ok config-files libhmsbeagle1 libhmsbeagle1 2.1.2-1 install ok installed libhmsbeagle1v5 libhmsbeagle1v5 2.1.2+20160831-5 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+b2 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1+b1 install ok installed libhsqldb-java libhsqldb-java 2.3.4-1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.13-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-2 install ok installed libhts1:amd64 libhts1 1.3.2-2 install ok installed libhtsjdk-java libhtsjdk-java 2.8.1+dfsg-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.11-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libhttpclient-java libhttpclient-java 4.5.2-2 install ok installed libhttpcore-java libhttpcore-java 4.4.6-1 install ok installed libhttpmime-java libhttpmime-java 4.5.2-2 install ok installed libhwloc-plugins libhwloc-plugins 1.11.5-1 install ok installed libhwloc5:amd64 libhwloc5 1.11.5-1 install ok installed libibatis-java libibatis-java 2.3.4.726-6 install ok installed libibverbs1 libibverbs1 1.2.1-2 install ok installed libice-dev:amd64 libice-dev 2:1.0.9-2 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu-dev libicu-dev 57.1-6+deb9u4 install ok installed libicu52:amd64 libicu52 52.1-8+deb8u7 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libidn2-0:amd64 libidn2-0 0.16-1+deb9u1 install ok installed libieee1284-3:amd64 libieee1284-3 0.2.11-13 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-12 install ok installed libilmbase12:amd64 libilmbase12 2.2.0-12 install ok installed libilmbase6:amd64 libilmbase6 1.0.1-6.1 install ok installed libimport-into-perl libimport-into-perl 1.002005-1 install ok installed libindirect-perl libindirect-perl 0.37-1+b1 install ok installed libinput-bin libinput-bin 1.6.3-1 install ok installed libinput10:amd64 libinput10 1.6.3-1 install ok installed libint1 libint1 1.1.6-2+b1 install ok installed libio-all-perl libio-all-perl 0.86-2 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1.1+b2 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.044-1 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.111-2 install ok installed libip4tc0:amd64 libip4tc0 1.6.0+snapshot20161117-6 install ok installed libipc-run-perl libipc-run-perl 0.94-1+deb9u1 install ok installed libipc-shareable-perl libipc-shareable-perl 0.61-1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.25-3 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export160 libisc-export160 1:9.10.3.dfsg.P4-12.3+deb9u6 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libisl10:amd64 libisl10 0.12.2-2 install ok installed libisl15:amd64 libisl15 0.18-1 install ok installed libisorelax-java libisorelax-java 20041111-9 install ok installed libitext-java libitext-java 2.1.7-11 install ok installed libitext1-java libitext1-java 1.4-6 install ok installed libitext5-java libitext5-java 5.5.6-2 install ok installed libitm1:amd64 libitm1 6.3.0-18+deb9u1 install ok installed libj2ssh-java libj2ssh-java 0.2.9-4 install ok installed libjaba-client-java libjaba-client-java 0+dfsg-1 install ok installed libjam-java libjam-java 0.1.20140824-2 install ok installed libjargs-java libjargs-java 1.0.0-4 install ok installed libjas-plotter-java libjas-plotter-java 2.2.6+dfsg1-3 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjava-xmlbuilder-java libjava-xmlbuilder-java 0.4-2 install ok installed libjaxen-java libjaxen-java 1.1.6-1+deb9u1 install ok installed libjaxp1.3-java libjaxp1.3-java 1.3.05-2 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.13-4.1 install ok installed libjbzip2-java libjbzip2-java 0.9.1-3 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjcommon-java libjcommon-java 1.0.23-1 install ok installed libjdom1-java libjdom1-java 1.1.3-1 install ok installed libjebl2-java libjebl2-java 0.1+20140614-1 install ok installed libjellyfish-2.0-2 libjellyfish-2.0-2 2.2.6-1+b1 install ok installed libjemalloc1 libjemalloc1 3.6.0-9.1 install ok installed libjets3t-java libjets3t-java 0.8.1+dfsg-3 install ok installed libjgoodies-common-java libjgoodies-common-java 1.8.1-2 install ok installed libjgoodies-forms-java libjgoodies-forms-java 1.9.0-3 install ok installed libjlapack-java libjlapack-java 0.8~dfsg-3 install ok installed libjline-java libjline-java 1.0-2 install ok installed libjmol-java libjmol-java 14.6.4+2016.11.05+dfsg1-3 install ok installed libjpeg-dev libjpeg-dev 1:1.5.1-2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:1.5.1-2 install ok installed libjs-bootstrap libjs-bootstrap 3.3.7+dfsg-2+deb9u2 install ok installed libjs-d3 libjs-d3 3.5.17-2 install ok installed libjs-es5-shim libjs-es5-shim 4.5.9-1 install ok installed libjs-highlight.js libjs-highlight.js 8.2+ds-5 install ok installed libjs-jquery libjs-jquery 3.1.1-2+deb9u1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.10.13+dfsg-2 install ok installed libjs-jquery-metadata libjs-jquery-metadata 11-3 install ok installed libjs-jquery-tablesorter libjs-jquery-tablesorter 11-3 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-4 install ok installed libjs-json libjs-json 0~20160510-1 install ok installed libjs-mathjax libjs-mathjax 2.7.0-2 install ok installed libjs-modernizr libjs-modernizr 2.6.2+ds1-1 install ok installed libjs-mootools libjs-mootools 1.4.5~debian1-2.1 install ok installed libjs-prototype libjs-prototype 1.7.1-3 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2 install ok installed libjs-sphinxdoc libjs-sphinxdoc 1.4.9-2 install ok installed libjs-twitter-bootstrap libjs-twitter-bootstrap 2.0.2+dfsg-10 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-1 install ok installed libjs-underscore libjs-underscore 1.8.3~dfsg-1 install ok installed libjsch-java libjsch-java 0.1.54-1 install ok installed libjson-c2:amd64 libjson-c2 0.11-4 install ok installed libjson-glib-1.0-0:amd64 libjson-glib-1.0-0 1.2.6-1 install ok installed libjson-glib-1.0-common libjson-glib-1.0-common 1.2.6-1 install ok installed libjson-perl libjson-perl 2.90-1 install ok installed libjson-xs-perl libjson-xs-perl 3.030-1 install ok installed libjsoncpp0 libjsoncpp0 0.6.0~rc2-3.1 install ok installed libjsoncpp1:amd64 libjsoncpp1 1.7.4-3 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-10 install ok installed libjswingreader-java libjswingreader-java 0.3-2 install ok installed libjung-free-java libjung-free-java 2.0.1+dfsg-1 install ok installed libjxr-tools libjxr-tools 1.1-6+b1 install ok installed libjxr0:amd64 libjxr0 1.1-6+b1 install ok installed libjzlib-java libjzlib-java 1.1.3-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.15-1+deb9u1 install ok installed libkdf5-2 libkdf5-2 2.8.1+dfsg-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9 install ok installed libkmod2:amd64 libkmod2 23-2 install ok installed libkpathsea6:amd64 libkpathsea6 2016.20160513.41080.dfsg-2+deb9u1 install ok installed libkrb5-3:amd64 libkrb5-3 1.15-1+deb9u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.15-1+deb9u1 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed libkyotocabinet16v5:amd64 libkyotocabinet16v5 1.2.76-4.2+b1 install ok installed liblapack-dev liblapack-dev 3.7.0-2 install ok installed liblapack3 liblapack3 3.7.0-2 install ok installed liblapacke liblapacke 3.7.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.8-4+deb9u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u4 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u4 install ok installed liblexical-sealrequirehints-perl liblexical-sealrequirehints-perl 0.010-1+b1 install ok installed liblist-allutils-perl liblist-allutils-perl 0.12-1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.416-1+b1 install ok installed liblist-someutils-perl liblist-someutils-perl 0.53-1 install ok installed liblist-utilsby-perl liblist-utilsby-perl 0.10-1 install ok installed libllvm3.5:amd64 libllvm3.5 1:3.5-10 install ok installed libllvm3.9:amd64 libllvm3.9 1:3.9.1-9 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b1 install ok installed liblog-dispatch-perl liblog-dispatch-perl 2.58-1 install ok installed liblog-log4perl-perl liblog-log4perl-perl 1.48-1+deb9u1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 deinstall ok config-files liblog4cpp5 liblog4cpp5 1.0-4 install ok installed liblog4cpp5v5 liblog4cpp5v5 1.1.1-3 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-7+deb9u1 install ok installed liblqr-1-0:amd64 liblqr-1-0 0.4.2-2+b2 install ok installed liblsan0:amd64 liblsan0 6.3.0-18+deb9u1 install ok installed libltdl-dev:amd64 libltdl-dev 2.4.6-2 install ok installed libltdl7:amd64 libltdl7 2.4.6-2 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-8.1+b2 install ok installed liblua5.2-0:amd64 liblua5.2-0 5.2.4-1.1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma-dev:amd64 liblzma-dev 5.2.2-1.2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed liblzo2-2:amd64 liblzo2-2 2.08-1.2+b2 install ok installed libmagic-mgc libmagic-mgc 1:5.30-1+deb9u3 install ok installed libmagic1:amd64 libmagic1 1:5.30-1+deb9u3 deinstall ok config-files libmagickcore-6.q16-2:amd64 libmagickcore-6.q16-2 8:6.8.9.9-5+deb8u12 install ok installed libmagickcore-6.q16-3:amd64 libmagickcore-6.q16-3 8:6.9.7.4+dfsg-11+deb9u8 install ok installed libmagickcore-6.q16-3-extra:amd64 libmagickcore-6.q16-3-extra 8:6.9.7.4+dfsg-11+deb9u8 deinstall ok config-files libmagickwand-6.q16-2:amd64 libmagickwand-6.q16-2 8:6.8.9.9-5+deb8u12 install ok installed libmagickwand-6.q16-3:amd64 libmagickwand-6.q16-3 8:6.9.7.4+dfsg-11+deb9u8 install ok installed libmail-java libmail-java 1.5.6-2 install ok installed libmail-sendmail-perl libmail-sendmail-perl 0.79.16-2 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmailutils5:amd64 libmailutils5 1:3.1.1-1 install ok installed libmaloc1 libmaloc1 0.2-3.1 install ok installed libmariadbclient18:amd64 libmariadbclient18 10.1.45-0+deb9u1 install ok installed libmath-bezier-perl libmath-bezier-perl 0.01-2 install ok installed libmath-derivative-perl libmath-derivative-perl 0.04-2 install ok installed libmath-random-isaac-perl libmath-random-isaac-perl 1.003-1 install ok installed libmath-random-isaac-xs-perl libmath-random-isaac-xs-perl 1.004-2+b2 install ok installed libmath-random-mt-perl libmath-random-mt-perl 1.17-1+b2 install ok installed libmath-round-perl libmath-round-perl 0.07-1 install ok installed libmath-spline-perl libmath-spline-perl 0.02-1 install ok installed libmath-tamuanova-perl libmath-tamuanova-perl 1.0.2-2+b4 install ok installed libmath-vec-perl libmath-vec-perl 1.01-3 install ok installed libmath-vecstat-perl libmath-vecstat-perl 0.08-1 install ok installed libmatthew-debug-java libmatthew-debug-java 0.8-1 install ok installed libmbedcrypto0:amd64 libmbedcrypto0 2.4.2-1+deb9u3 install ok installed libmbedtls-dev:amd64 libmbedtls-dev 2.4.2-1+deb9u3 install ok installed libmbedtls10:amd64 libmbedtls10 2.4.2-1+deb9u3 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.4.2-1+deb9u3 install ok installed libmems-1.6-1v5:amd64 libmems-1.6-1v5 1.6.0+4725-4 install ok installed libmiglayout-java libmiglayout-java 4.2-3 install ok installed libmime-lite-perl libmime-lite-perl 3.030-2 install ok installed libmime-tools-perl libmime-tools-perl 5.508-1 install ok installed libmime-types-perl libmime-types-perl 2.13-1 install ok installed libminimap0 libminimap0 0.2-3+b1 install ok installed libmldbm-perl libmldbm-perl 2.05-2 install ok installed libmng1:amd64 libmng1 1.0.10+dfsg-3.1+b5 install ok installed libmnl0:amd64 libmnl0 1.0.4-2 install ok installed libmodule-build-perl libmodule-build-perl 0.422000-1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-load-conditional-perl libmodule-load-conditional-perl 0.68-1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.2-1 install ok installed libmodule-runtime-conflicts-perl libmodule-runtime-conflicts-perl 0.003-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-2 install ok installed libmodule-signature-perl libmodule-signature-perl 0.81-1 install ok installed libmoo-perl libmoo-perl 2.002005-1 install ok installed libmoose-perl libmoose-perl 2.1807-1 install ok installed libmoox-handlesvia-perl libmoox-handlesvia-perl 0.001008-2 install ok installed libmopac7-1gf libmopac7-1gf 1.15-6+b1 install ok installed libmotif-common libmotif-common 2.3.4-13 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libmpc3:amd64 libmpc3 1.0.3-1+b2 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-1 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmpj-java libmpj-java 0.44+dfsg-3 install ok installed libmpx2:amd64 libmpx2 6.3.0-18+deb9u1 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libmsv-java libmsv-java 2009.1+dfsg1-5 install ok installed libmtdev1:amd64 libmtdev1 1.1.5-1+b1 install ok installed libmtj-java libmtj-java 0.9.14+dfsg-4 install ok installed libmultidimensional-perl libmultidimensional-perl 0.012-1+b1 install ok installed libmuscle-3.7-1 libmuscle-3.7-1 3.7+4565-2 install ok installed libmysql-java libmysql-java 5.1.49-0+deb9u1 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.60-0+deb8u1 install ok installed libnaga-java libnaga-java 3.0+svn80-1 install ok installed libnamespace-autoclean-perl libnamespace-autoclean-perl 0.28-1 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-1 install ok installed libnanoxml2-java libnanoxml2-java 2.2.3.dfsg-5 install ok installed libnb-org-openide-util-java libnb-org-openide-util-java 8.1+dfsg1-5 install ok installed libnb-org-openide-util-lookup-java libnb-org-openide-util-lookup-java 8.1+dfsg1-5 install ok installed libncbi-vdb2 libncbi-vdb2 2.8.1+dfsg-2 install ok installed libncbi-wvdb2 libncbi-wvdb2 2.8.1+dfsg-2 install ok installed libncbi6:amd64 libncbi6 6.1.20170106+dfsg1-0+deb9u1 install ok installed libncl1 libncl1 2.1.18+dfsg-2+b1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncurses5-dev:amd64 libncurses5-dev 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libncursesw5-dev:amd64 libncursesw5-dev 6.0+20161126-1+deb9u2 install ok installed libnet-dbus-perl libnet-dbus-perl 1.1.0-4+b1 install ok installed libnet-http-perl libnet-http-perl 6.12-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.80-1 install ok installed libnetlib-java libnetlib-java 0.9.3-3 install ok installed libnetpbm10 libnetpbm10 2:10.0-15.3+b2 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnettle6:amd64 libnettle6 3.3-1+b2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.18.1-1+deb9u1 install ok installed libngs-java libngs-java 1.3.0-2 install ok installed libngs-sdk-dev libngs-sdk-dev 1.3.0-2 install ok installed libngs-sdk1 libngs-sdk1 1.3.0-2 install ok installed libnl-3-200:amd64 libnl-3-200 3.2.27-2 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.2.27-2 install ok installed libnlopt0:amd64 libnlopt0 2.4.2+dfsg-2+b2 install ok installed libnotify4:amd64 libnotify4 0.7.7-2 install ok installed libnpth0:amd64 libnpth0 1.3-1 install ok installed libnspr4:amd64 libnspr4 2:4.12-6 install ok installed libnss3:amd64 libnss3 2:3.26.2-1.1+deb9u1 install ok installed libntlm0:amd64 libntlm0 1.4-8 install ok installed libnucleotidelikelihoodcore0 libnucleotidelikelihoodcore0 1.8.4+dfsg.1-1 install ok installed libnuma1:amd64 libnuma1 2.0.11-2.1 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-1 install ok installed libnumber-format-perl libnumber-format-perl 1.75-1 install ok installed libobjc4:amd64 libobjc4 6.3.0-18+deb9u1 install ok installed libogg0:amd64 libogg0 1.3.2-1 install ok installed liboglappth2 liboglappth2 1.0.0-2 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-1+deb9u1 install ok installed libopenbabel4v5 libopenbabel4v5 2.3.2+dfsg-3 install ok installed libopenblas-base libopenblas-base 0.2.19-3 install ok installed libopenexr22:amd64 libopenexr22 2.2.0-11+b1 install ok installed libopenexr6:amd64 libopenexr6 1.6.1-8 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.1.2-1.1+deb9u4 install ok installed libopenjpeg5:amd64 libopenjpeg5 1:1.5.2-3 deinstall ok config-files libopenmpi1.6 libopenmpi1.6 1.6.5-9.1+deb8u1 install ok installed libopenmpi2:amd64 libopenmpi2 2.0.2-2 install ok installed libopus0:amd64 libopus0 1.2~alpha2-1 install ok installed liborc-0.4-0:amd64 liborc-0.4-0 1:0.4.26-2 install ok installed liboro-java liboro-java 2.0.8a-12 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b4 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2 install ok installed libpackage-constants-perl libpackage-constants-perl 0.06-1 install ok installed libpackage-deprecationmanager-perl libpackage-deprecationmanager-perl 0.17-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.37-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.28-3+b1 install ok installed libpadwalker-perl libpadwalker-perl 2.2-2+b1 install ok installed libpal-java libpal-java 1.5.1+dfsg-2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam-systemd:amd64 libpam-systemd 232-25+deb9u12 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.40.5-1 install ok installed libpango1.0-0:amd64 libpango1.0-0 1.40.5-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.40.5-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.40.5-1 install ok installed libpangox-1.0-0:amd64 libpangox-1.0-0 0.0.2-5+b2 install ok installed libpangoxft-1.0-0:amd64 libpangoxft-1.0-0 1.40.5-1 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu5 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu5 install ok installed libparams-classify-perl libparams-classify-perl 0.013-6+b1 install ok installed libparams-util-perl libparams-util-perl 1.07-3+b1 install ok installed libparams-validate-perl libparams-validate-perl 1.26-1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967013+dfsg-1 install ok installed libparse-yapp-perl libparse-yapp-perl 1.05-12 install ok installed libpath-tiny-perl libpath-tiny-perl 0.100-1 install ok installed libpathplan4 libpathplan4 2.38.0-17 install ok installed libpbbam:amd64 libpbbam 0.7.4+ds-1 install ok installed libpbdata:amd64 libpbdata 0~20161219-1 install ok installed libpbihdf:amd64 libpbihdf 0~20161219-1 install ok installed libpbseq libpbseq 0~20161219-1 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.4-1+b2 install ok installed libpcre16-3:amd64 libpcre16-3 2:8.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libpcre3-dev:amd64 libpcre3-dev 2:8.39-3 install ok installed libpcre32-3:amd64 libpcre32-3 2:8.39-3 deinstall ok config-files libpcrecpp0:amd64 libpcrecpp0 2:8.35-3.3+deb8u4 install ok installed libpcrecpp0v5:amd64 libpcrecpp0v5 2:8.39-3 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.20-1 install ok installed libperformance0.5 libperformance0.5 0.5.0-1 install ok installed libperl4-corelibs-perl libperl4-corelibs-perl 0.003-2+deb9u1 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libperlio-gzip-perl libperlio-gzip-perl 0.19-1+b2 install ok installed libperlio-utf8-strict-perl libperlio-utf8-strict-perl 0.006-1+b2 install ok installed libpgtypes3:amd64 libpgtypes3 9.6.17-0+deb9u1 install ok installed libpicard-java libpicard-java 2.8.1+dfsg-1 install ok installed libpipeline1:amd64 libpipeline1 1.4.1-2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.34.0-1 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpng12-dev:amd64 libpng12-dev 1.2.50-2+deb8u3 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libpod-coverage-perl libpod-coverage-perl 0.23-1 install ok installed libpod-latex-perl libpod-latex-perl 0.61-2 install ok installed libpod-markdown-perl libpod-markdown-perl 3.005000-1 install ok installed libpod-readme-perl libpod-readme-perl 1.1.2-1 install ok installed libpolkit-agent-1-0:amd64 libpolkit-agent-1-0 0.105-18+deb9u1 install ok installed libpolkit-backend-1-0:amd64 libpolkit-backend-1-0 0.105-18+deb9u1 install ok installed libpolkit-gobject-1-0:amd64 libpolkit-gobject-1-0 0.105-18+deb9u1 install ok installed libpoppler-qt4-4:amd64 libpoppler-qt4-4 0.48.0-2+deb9u2 install ok installed libpoppler46:amd64 libpoppler46 0.26.5-2+deb8u4 install ok installed libpoppler64:amd64 libpoppler64 0.48.0-2+deb9u2 install ok installed libpopt0:amd64 libpopt0 1.16-10+b2 install ok installed libpostgresql-jdbc-java libpostgresql-jdbc-java 9.4.1212-1 install ok installed libpostscript-perl libpostscript-perl 0.06-2 install ok installed libpotrace0 libpotrace0 1.13-3 install ok installed libpq5:amd64 libpq5 9.6.17-0+deb9u1 install ok installed libprocessing-core-java libprocessing-core-java 1.2.1-1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libprotobuf10:amd64 libprotobuf10 3.0.0-9 install ok installed libprotobuf9:amd64 libprotobuf9 2.6.1-1 deinstall ok config-files libproxy1:amd64 libproxy1 0.4.11-4+b2 install ok installed libproxy1v5:amd64 libproxy1v5 0.4.14-2 install ok installed libpsl5:amd64 libpsl5 0.17.0-3 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+19.g67c0807.open-3 install ok installed libptexenc1:amd64 libptexenc1 2016.20160513.41080.dfsg-2+deb9u1 install ok installed libpth20:amd64 libpth20 2.0.7-20+b2 install ok installed libpthread-stubs0-dev:amd64 libpthread-stubs0-dev 0.3-4 install ok installed libpulse0:amd64 libpulse0 10.0-1+deb9u1 install ok installed libpvm3:amd64 libpvm3 3.4.6-1+b2 install ok installed libpython-all-dev:amd64 libpython-all-dev 2.7.13-2 install ok installed libpython-dev:amd64 libpython-dev 2.7.13-2 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.13-2 install ok installed libpython2.7:amd64 libpython2.7 2.7.13-2+deb9u3 install ok installed libpython2.7-dev:amd64 libpython2.7-dev 2.7.13-2+deb9u3 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.13-2+deb9u3 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.13-2+deb9u3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.5.3-1 deinstall ok config-files libpython3.4-minimal:amd64 libpython3.4-minimal 3.4.2-1 install ok installed libpython3.5-minimal:amd64 libpython3.5-minimal 3.5.3-1+deb9u1 install ok installed libpython3.5-stdlib:amd64 libpython3.5-stdlib 3.5.3-1+deb9u1 install ok installed libqes0 libqes0 0.2.7-1 install ok installed libqt4-dbus:amd64 libqt4-dbus 4:4.8.7+dfsg-11 install ok installed libqt4-declarative:amd64 libqt4-declarative 4:4.8.7+dfsg-11 install ok installed libqt4-designer:amd64 libqt4-designer 4:4.8.7+dfsg-11 install ok installed libqt4-help:amd64 libqt4-help 4:4.8.7+dfsg-11 install ok installed libqt4-network:amd64 libqt4-network 4:4.8.7+dfsg-11 install ok installed libqt4-opengl:amd64 libqt4-opengl 4:4.8.7+dfsg-11 install ok installed libqt4-script:amd64 libqt4-script 4:4.8.7+dfsg-11 install ok installed libqt4-scripttools:amd64 libqt4-scripttools 4:4.8.7+dfsg-11 install ok installed libqt4-sql:amd64 libqt4-sql 4:4.8.7+dfsg-11 install ok installed libqt4-sql-mysql:amd64 libqt4-sql-mysql 4:4.8.7+dfsg-11 install ok installed libqt4-svg:amd64 libqt4-svg 4:4.8.7+dfsg-11 install ok installed libqt4-test:amd64 libqt4-test 4:4.8.7+dfsg-11 install ok installed libqt4-xml:amd64 libqt4-xml 4:4.8.7+dfsg-11 install ok installed libqt4-xmlpatterns:amd64 libqt4-xmlpatterns 4:4.8.7+dfsg-11 install ok installed libqt5core5a:amd64 libqt5core5a 5.7.1+dfsg-3+deb9u2 install ok installed libqt5dbus5:amd64 libqt5dbus5 5.7.1+dfsg-3+deb9u2 install ok installed libqt5gui5:amd64 libqt5gui5 5.7.1+dfsg-3+deb9u2 install ok installed libqt5network5:amd64 libqt5network5 5.7.1+dfsg-3+deb9u2 install ok installed libqt5printsupport5:amd64 libqt5printsupport5 5.7.1+dfsg-3+deb9u2 install ok installed libqt5svg5:amd64 libqt5svg5 5.7.1~20161021-2+b2 install ok installed libqt5widgets5:amd64 libqt5widgets5 5.7.1+dfsg-3+deb9u2 install ok installed libqt5xml5:amd64 libqt5xml5 5.7.1+dfsg-3+deb9u2 install ok installed libqtassistantclient4:amd64 libqtassistantclient4 4.6.3-7+b1 install ok installed libqtcore4:amd64 libqtcore4 4:4.8.7+dfsg-11 install ok installed libqtdbus4:amd64 libqtdbus4 4:4.8.7+dfsg-11 install ok installed libqtgui4:amd64 libqtgui4 4:4.8.7+dfsg-11 install ok installed libqtwebkit4:amd64 libqtwebkit4 2.3.4.dfsg-9.1 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed librdmacm1 librdmacm1 1.1.0-2 install ok installed librdp-taxonomy-tree-java librdp-taxonomy-tree-java 1.2.0-1 install ok installed libreadline-dev:amd64 libreadline-dev 7.0-3 install ok installed libreadline5:amd64 libreadline5 5.2+dfsg-3+b1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed libreadonly-perl libreadonly-perl 2.050-1 install ok installed libregexp-common-perl libregexp-common-perl 2016060801-1 install ok installed libregexp-java libregexp-java 1.5-3 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-3 deinstall ok config-files librelion-1.3-1:amd64 librelion-1.3-1 1.3+dfsg-2 install ok installed librelion-1.4-1:amd64 librelion-1.4-1 1.4+dfsg-2+b2 install ok installed librest-0.7-0:amd64 librest-0.7-0 0.8.0-2 install ok installed librg-exception-perl librg-exception-perl 1.0.3-2 install ok installed librg-reprof-bundle-perl librg-reprof-bundle-perl 1.0.1-4 install ok installed librg-utils-perl librg-utils-perl 1.0.43-4 install ok installed librhino-java librhino-java 1.7.7.1-1 install ok installed librole-tiny-perl librole-tiny-perl 2.000005-1 install ok installed librsvg2-2:amd64 librsvg2-2 2.40.16-1+b1 install ok installed librsvg2-common:amd64 librsvg2-common 2.40.16-1+b1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-1+b1 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libruby2.3:amd64 libruby2.3 2.3.3-1+deb9u8 install ok installed libsam-java libsam-java 1.113-1 install ok installed libsane:amd64 libsane 1.0.25-4.1 install ok installed libsane-common libsane-common 1.0.25-4.1 install ok installed libsane-extras:amd64 libsane-extras 1.0.22.4 install ok installed libsane-extras-common libsane-extras-common 1.0.22.4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsaxon-java libsaxon-java 1:6.5.5-10 install ok installed libsaxonb-java libsaxonb-java 9.1.0.8+dfsg-1 install ok installed libsaxonhe-java libsaxonhe-java 9.5.1.1+dfsg-2 install ok installed libsc-data libsc-data 2.3.1-18+deb9u1 install ok installed libsc7v5 libsc7v5 2.3.1-18+deb9u1 install ok installed libscalar-list-utils-perl libscalar-list-utils-perl 1:1.47-1 install ok installed libsctp1:amd64 libsctp1 1.0.17+dfsg-1+b1 install ok installed libsdl1.2debian:amd64 libsdl1.2debian 1.2.15+dfsg1-4 install ok installed libsdsl3:amd64 libsdsl3 2.0.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.3.1-2.1+deb9u1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsensors4:amd64 libsensors4 1:3.4.0-4 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libservlet2.5-java libservlet2.5-java 6.0.45+dfsg-1~deb8u1 install ok installed libservlet3.1-java libservlet3.1-java 8.5.54-0+deb9u1 install ok installed libset-intspan-perl libset-intspan-perl 1.19-1 install ok installed libset-scalar-perl libset-scalar-perl 1.29-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.10-5 install ok installed libslang2:amd64 libslang2 2.3.1-5 install ok installed libsm-dev:amd64 libsm-dev 2:1.2.2-1+b3 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsmithwaterman0 libsmithwaterman0 0.0+20160702-1+b1 install ok installed libsnappy-java libsnappy-java 1.1.2.6-1 install ok installed libsnappy-jni libsnappy-jni 1.1.2.6-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.3-3 install ok installed libsndfile1:amd64 libsndfile1 1.0.27-3 install ok installed libsnp-sites1 libsnp-sites1 2.3.2-1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.20-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103012-1 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-1 install ok installed libsoup-gnome2.4-1:amd64 libsoup-gnome2.4-1 2.56.0-2+deb9u2 install ok installed libsoup2.4-1:amd64 libsoup2.4-1 2.56.0-2+deb9u2 install ok installed libspiffy-perl libspiffy-perl 0.41-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsprng2 libsprng2 2.0a-10 install ok installed libsqlclient1.7 libsqlclient1.7 1.7.3-2.1 install ok installed libsqlite0 libsqlite0 2.8.17-14 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libsquizz libsquizz 0.99c+dfsg-1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libssh2-1:amd64 libssh2-1 1.7.0-1+deb9u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u1 install ok installed libssw-java libssw-java 1.1-1+b1 install ok installed libssw0:amd64 libssw0 1.1-1+b1 install ok installed libstaden-read1 libstaden-read1 1.13.7-1 install ok installed libstaden-read11:amd64 libstaden-read11 1.14.8-2 install ok installed libstatistics-basic-perl libstatistics-basic-perl 1.6611-1 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0612-1 install ok installed libstdc++-4.9-dev:amd64 libstdc++-4.9-dev 4.9.2-10+deb8u1 install ok installed libstdc++-6-dev:amd64 libstdc++-6-dev 6.3.0-18+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsteptalk0 libsteptalk0 0.10.0-6+b3 install ok installed libstrictures-perl libstrictures-perl 2.000003-1 install ok installed libstring-approx-perl libstring-approx-perl 3.27-1+b4 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-identify-perl libsub-identify-perl 0.12-2+b1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.21-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2600-1 install ok installed libsuitesparseconfig4:amd64 libsuitesparseconfig4 1:4.5.4-1 install ok installed libsuperlu5:amd64 libsuperlu5 5.2.1+dfsg1-2 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-2 install ok installed libsvg-perl libsvg-perl 2.64-1 install ok installed libsvm3 libsvm3 3.21+ds-1.1 install ok installed libswing-layout-java libswing-layout-java 1.0.4-4 install ok installed libsynctex1:amd64 libsynctex1 2016.20160513.41080.dfsg-2+deb9u1 install ok installed libsys-hostname-long-perl libsys-hostname-long-perl 1.5-1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libsz2:amd64 libsz2 0.3.2-1 install ok installed libtabixpp0:amd64 libtabixpp0 1.0.0-2 install ok installed libtablelayout-java libtablelayout-java 20090826-3 install ok installed libtamuanova-0.2 libtamuanova-0.2 0.2-4 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libtbb2:amd64 libtbb2 4.3~20150611-2 install ok installed libtcl8.5:amd64 libtcl8.5 8.5.19-2+b1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.6+dfsg-1+b1 install ok installed libtcmalloc-minimal4 libtcmalloc-minimal4 2.5-2.2 install ok installed libtdb1:amd64 libtdb1 1.3.11-2 install ok installed libterm-readkey-perl libterm-readkey-perl 2.37-1 install ok installed libterm-ui-perl libterm-ui-perl 0.46-1 install ok installed libtest-deep-perl libtest-deep-perl 1.126-1 install ok installed libtest-differences-perl libtest-differences-perl 0.64-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-file-perl libtest-file-perl 1.442-1 install ok installed libtest-files-perl libtest-files-perl 0.14-1 install ok installed libtest-most-perl libtest-most-perl 0.35-1 install ok installed libtest-output-perl libtest-output-perl 1.03-1 install ok installed libtest-pod-perl libtest-pod-perl 1.51-1 install ok installed libtest-simple-perl libtest-simple-perl 1.302075-1 install ok installed libtest-warn-perl libtest-warn-perl 0.32-1 install ok installed libtexlua52:amd64 libtexlua52 2016.20160513.41080.dfsg-2+deb9u1 install ok installed libtexluajit2:amd64 libtexluajit2 2016.20160513.41080.dfsg-2+deb9u1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b5 install ok installed libtext-csv-perl libtext-csv-perl 1.33-2 install ok installed libtext-csv-xs-perl libtext-csv-xs-perl 1.26-1 install ok installed libtext-diff-perl libtext-diff-perl 1.44-1 install ok installed libtext-format-perl libtext-format-perl 0.60-1 install ok installed libtext-glob-perl libtext-glob-perl 0.10-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b4 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b4 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7.1 install ok installed libthai-data libthai-data 0.1.26-1 install ok installed libthai0:amd64 libthai0 0.1.26-1 install ok installed libtheora0:amd64 libtheora0 1.1.1+dfsg.1-14+b1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2 install ok installed libtiff5:amd64 libtiff5 4.0.8-2+deb9u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb9u1 install ok installed libtinfo-dev:amd64 libtinfo-dev 6.0+20161126-1+deb9u2 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 deinstall ok config-files libtinyxml2.6.2:amd64 libtinyxml2.6.2 2.6.2-2 install ok installed libtinyxml2.6.2v5:amd64 libtinyxml2.6.2v5 2.6.2-4 install ok installed libtk8.5:amd64 libtk8.5 8.5.19-1+b1 install ok installed libtk8.6:amd64 libtk8.6 8.6.6-1+b1 install ok installed libtmglib3 libtmglib3 3.7.0-2 install ok installed libtool libtool 2.4.6-2 install ok installed libtre5:amd64 libtre5 0.8.0-6 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.29-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.28-1 install ok installed libtsan0:amd64 libtsan0 6.3.0-18+deb9u1 install ok installed libtxc-dxtn-s2tc0:amd64 libtxc-dxtn-s2tc0 0~git20131104-1.1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.000005-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.012-1+b2 install ok installed libtypes-serialiser-perl libtypes-serialiser-perl 1.0-1 install ok installed libubsan0:amd64 libubsan0 6.3.0-18+deb9u1 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libunicode-map-perl libunicode-map-perl 0.112-11+b3 install ok installed libunicode-utf8-perl libunicode-utf8-perl 0.60-1+b3 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libunixsocket-java libunixsocket-java 0.8-1 install ok installed libunwind8 libunwind8 1.1-4.1 install ok installed liburi-perl liburi-perl 1.71-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-30 install ok installed libusb-1.0-0:amd64 libusb-1.0-0 2:1.0.21-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libutempter0:amd64 libutempter0 1.1.6-3 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libv4l-0:amd64 libv4l-0 1.12.3-1 install ok installed libv4lconvert0:amd64 libv4lconvert0 1.12.3-1 install ok installed libvamsas-client-java libvamsas-client-java 0.2~git2011.10.17+1b42648-1 install ok installed libvariable-magic-perl libvariable-magic-perl 0.61-1 install ok installed libvcflib-tools libvcflib-tools 1.0.0~rc1+dfsg1-3 install ok installed libvcflib1 libvcflib1 1.0.0~rc1+dfsg1-3 install ok installed libvecmath-java libvecmath-java 1.5.2-5 install ok installed libvibrant6b:amd64 libvibrant6b 6.1.20170106+dfsg1-0+deb9u1 install ok installed libvisual-0.4-0:amd64 libvisual-0.4-0 0.4.0-10 install ok installed libvisual-0.4-plugins:amd64 libvisual-0.4-plugins 1:0.4.0+dfsg1-10 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-2 install ok installed libvorbis0a:amd64 libvorbis0a 1.3.5-4+deb9u2 install ok installed libvorbisenc2:amd64 libvorbisenc2 1.3.5-4+deb9u2 install ok installed libvorbisfile3:amd64 libvorbisfile3 1.3.5-4+deb9u2 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u1 install ok installed libvte-common libvte-common 1:0.28.2-5 install ok installed libvte9 libvte9 1:0.28.2-5+b2 install ok installed libwacom-bin libwacom-bin 0.22-1+b1 install ok installed libwacom-common libwacom-common 0.22-1 install ok installed libwacom2:amd64 libwacom2 0.22-1+b1 install ok installed libwayland-client0:amd64 libwayland-client0 1.12.0-1+deb9u1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.12.0-1+deb9u1 install ok installed libwayland-egl1-mesa:amd64 libwayland-egl1-mesa 13.0.6-1+b2 install ok installed libwayland-server0:amd64 libwayland-server0 1.12.0-1+deb9u1 install ok installed libwcs5:amd64 libwcs5 5.16-1 install ok installed libwebp5:amd64 libwebp5 0.4.1-1.2+b2 install ok installed libwebp6:amd64 libwebp6 0.5.2-1 install ok installed libwebpdemux1:amd64 libwebpdemux1 0.4.1-1.2+b2 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.5.2-1 install ok installed libwebpmux1:amd64 libwebpmux1 0.4.1-1.2+b2 install ok installed libwebpmux2:amd64 libwebpmux2 0.5.2-1 install ok installed libwmf0.2-7:amd64 libwmf0.2-7 0.2.8.4-10.6 install ok installed libwrap0:amd64 libwrap0 7.6.q-26 install ok installed libwsdl4j-java libwsdl4j-java 1.6.3-4 install ok installed libwww-perl libwww-perl 6.15-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 deinstall ok config-files libwxbase3.0-0:amd64 libwxbase3.0-0 3.0.2-1+b1 install ok installed libwxbase3.0-0v5:amd64 libwxbase3.0-0v5 3.0.2+dfsg-4 deinstall ok config-files libwxgtk3.0-0:amd64 libwxgtk3.0-0 3.0.2-1+b1 install ok installed libwxgtk3.0-0v5:amd64 libwxgtk3.0-0v5 3.0.2+dfsg-4 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u1 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u1 install ok installed libx11-dev:amd64 libx11-dev 2:1.6.4-3+deb9u1 install ok installed libx11-doc libx11-doc 2:1.6.4-3+deb9u1 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-7 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.4-3+deb9u1 install ok installed libxalan2-java libxalan2-java 2.7.1-9 install ok installed libxau-dev:amd64 libxau-dev 1:1.0.8-1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.12-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.12-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.12-1 install ok installed libxcb-icccm4:amd64 libxcb-icccm4 0.4.1-1 install ok installed libxcb-image0:amd64 libxcb-image0 0.4.0-1+b2 install ok installed libxcb-keysyms1:amd64 libxcb-keysyms1 0.4.0-1+b2 install ok installed libxcb-present0:amd64 libxcb-present0 1.12-1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.12-1 install ok installed libxcb-render-util0:amd64 libxcb-render-util0 0.3.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.12-1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.12-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.12-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.12-1 install ok installed libxcb-util0:amd64 libxcb-util0 0.3.8-3+b2 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.12-1 install ok installed libxcb-xinerama0:amd64 libxcb-xinerama0 1.12-1 install ok installed libxcb-xkb1:amd64 libxcb-xkb1 1.12-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxcb1-dev:amd64 libxcb1-dev 1.12-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-2 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.14-1+deb9u2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b3 install ok installed libxdmcp-dev:amd64 libxdmcp-dev 1:1.1.2-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.38.0-17 install ok installed libxerces-c3.1:amd64 libxerces-c3.1 3.1.4+debian-2+deb9u1 install ok installed libxerces2-java libxerces2-java 2.11.0-7 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxfont1:amd64 libxfont1 1:1.5.2-4 install ok installed libxft2:amd64 libxft2 2.3.2-1+b2 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.3-1+b3 install ok installed libxkbcommon-x11-0:amd64 libxkbcommon-x11-0 0.7.1-2~deb9u1 install ok installed libxkbcommon0:amd64 libxkbcommon0 0.7.1-2~deb9u1 install ok installed libxm4:amd64 libxm4 2.3.4-13 install ok installed libxml-checker-perl libxml-checker-perl 0.13-6 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-2 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-7 install ok installed libxml-dom-perl libxml-dom-perl 1.44-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-2 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-5 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0128+dfsg-1+deb9u1 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.95-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-2+b1 install ok installed libxml-perl libxml-perl 0.08-2 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.56-1 install ok installed libxml-simple-perl libxml-simple-perl 2.22-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.40-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u2 install ok installed libxmlgraphics-commons-java libxmlgraphics-commons-java 2.1-2 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2 install ok installed libxom-java libxom-java 1.2.10-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxpp2-java libxpp2-java 2.1.10-7 install ok installed libxpp3-java libxpp3-java 1.1.4c-2 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.2-1+b2 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.29-2.1+deb9u2 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt-dev:amd64 libxt-dev 1:1.1.5-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libxtables12:amd64 libxtables12 1.6.0+snapshot20161117-6 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxz-java libxz-java 1.6-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.7-2 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.63-2 install ok installed libyaml-perl libyaml-perl 1.21-1 install ok installed libyaml-tiny-perl libyaml-tiny-perl 1.70-1 deinstall ok config-files libzeep3.0 libzeep3.0 3.0.2-1+b2 install ok installed libzeep3.0v5 libzeep3.0v5 3.0.2-4+b2 install ok installed libzeus-jscl-java libzeus-jscl-java 1.72-1 install ok installed libzstd1 libzstd1 1.1.2-1 install ok installed libzzip-0-13:amd64 libzzip-0-13 0.13.62-3.2~deb9u1 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.9.228-1 install ok installed littler littler 0.3.1-1 install ok installed lksctp-tools lksctp-tools 1.0.17+dfsg-1+b1 install ok installed lmodern lmodern 2.004.5-3 install ok installed login login 1:4.4-4.1 install ok installed logol-bin logol-bin 1.7.5-1 install ok installed loki loki 2.4.7.4-6+b1 install ok installed lsb-base lsb-base 9.20161125 install ok installed ltrsift ltrsift 1.0.2-7 install ok installed lua-filesystem:amd64 lua-filesystem 1.6.3-1 install ok installed lua-lpeg:amd64 lua-lpeg 1.0.0-1 install ok installed lua-md5:amd64 lua-md5 1.2+git+1+8d87fee-1 install ok installed lynx lynx 2.8.9dev11-1 install ok installed lynx-common lynx-common 2.8.9dev11-1 install ok installed lynx-cur lynx-cur 2.8.9dev11-1 install ok installed m4 m4 1.4.18-1 install ok installed macs macs 2.1.1.20160309-1 install ok installed macsyfinder macsyfinder 1.0.2-3 install ok installed maffilter maffilter 1.1.0-1+dfsg-2+b2 install ok installed mafft mafft 7.307-1 install ok installed mailutils mailutils 1:3.1.1-1 install ok installed mailutils-common mailutils-common 1:3.1.1-1 install ok installed make make 4.1-9.1 install ok installed man-db man-db 2.7.6.1-2 install ok installed manpages manpages 4.10-2 install ok installed manpages-dev manpages-dev 4.10-2 install ok installed mapdamage mapdamage 2.0.6+dfsg-2 install ok installed mapsembler2 mapsembler2 2.2.3+dfsg-3+b1 install ok installed maq maq 0.7.1-7 install ok installed maqview maqview 0.2.5-7+b1 install ok installed mariadb-client-10.1 mariadb-client-10.1 10.1.45-0+deb9u1 install ok installed mariadb-client-core-10.1 mariadb-client-core-10.1 10.1.45-0+deb9u1 install ok installed mariadb-common mariadb-common 10.1.45-0+deb9u1 install ok installed mash mash 1.1.1-2 install ok installed massxpert massxpert 3.6.1-1 install ok installed massxpert-data massxpert-data 3.6.1-1 install ok installed mauve-aligner mauve-aligner 2.4.0+4734-3 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mcl mcl 1:14-137-1+b1 install ok installed med-bio med-bio 3.0.1 install ok installed med-config med-config 3.0.1 install ok installed med-tasks med-tasks 3.0.1 install ok installed melting melting 4.3.1+dfsg-2+b1 install ok installed menu menu 2.1.47+b1 install ok installed meryl meryl 0~20150903+r2013-3 install ok installed mesa-utils mesa-utils 8.3.0-3 install ok installed metaphlan2 metaphlan2 2.6.0+ds-2 install ok installed metaphlan2-data metaphlan2-data 2.6.0+ds-2 install ok installed metastudent metastudent 2.0.1-4 install ok installed metastudent-data metastudent-data 2.0.1-2 install ok installed metastudent-data-2 metastudent-data-2 1.0.0-2 install ok installed mhap mhap 2.1.1+dfsg-1 install ok installed microbegps microbegps 1.0.0-2 install ok installed microbiomeutil microbiomeutil 20101212+dfsg1-1 install ok installed microbiomeutil-data microbiomeutil-data 20101212+dfsg1-1 install ok installed mime-support mime-support 3.60 install ok installed minia minia 1.6906-1+b2 install ok installed miniasm miniasm 0.2+dfsg-2+b1 install ok installed minimap minimap 0.2-3+b1 install ok installed mipe mipe 1.1-5 install ok installed mira-assembler mira-assembler 4.9.6-2 install ok installed mira-rfam-12s-rrna mira-rfam-12s-rrna 4.9.6-2 install ok installed mknfonts.tool mknfonts.tool 0.5-11+b5 install ok installed mlv-smile mlv-smile 1.47-4+b1 install ok installed mothur mothur 1.38.1.1-1 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed mpi-default-bin mpi-default-bin 1.8 install ok installed mpqc mpqc 2.3.1-18+deb9u1 install ok installed mrbayes mrbayes 3.2.6+dfsg-1+b4 install ok installed mrs mrs 6.0.5+dfsg-2+b2 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed mummer mummer 3.23+dfsg-2 install ok installed murasaki murasaki 1.68.6-6+b4 install ok installed murasaki-common murasaki-common 1.68.6-6 install ok installed muscle muscle 1:3.8.31+dfsg-2 install ok installed mustang mustang 3.2.3-1 install ok installed mysql-client mysql-client 5.5.9999+default install ok installed mysql-common mysql-common 5.8+1.0.2 install ok installed nanopolish nanopolish 0.5.0-1+b1 install ok installed nast-ier nast-ier 20101212+dfsg1-1+b1 install ok installed ncbi-blast+ ncbi-blast+ 2.6.0-1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.6.0-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb9u1 install ok installed ncbi-entrez-direct ncbi-entrez-direct 6.10.20170123+ds-1 install ok installed ncbi-epcr ncbi-epcr 2.3.12-1-4 install ok installed ncbi-seg ncbi-seg 0.0.20000620-3+b1 install ok installed ncbi-tools-bin ncbi-tools-bin 6.1.20170106+dfsg1-0+deb9u1 install ok installed ncbi-tools-x11 ncbi-tools-x11 6.1.20170106+dfsg1-0+deb9u1 install ok installed ncl-tools ncl-tools 2.1.18+dfsg-2+b1 install ok installed ncoils ncoils 2002-4+b1 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed neobio neobio 0.0.20030929-2 install ok installed netbase netbase 5.4 install ok installed netpbm netpbm 2:10.0-15.3+b2 install ok installed njplot njplot 2.4-7 install ok installed norsnet norsnet 1.0.17-2 install ok installed norsp norsp 1.0.6-2 install ok installed notification-daemon notification-daemon 3.20.0-1+b1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.11-1 deinstall ok config-files openjdk-7-jre-headless:amd64 openjdk-7-jre-headless 7u181-2.6.14-1~deb8u1 install ok installed openjdk-8-jre:amd64 openjdk-8-jre 8u252-b09-1~deb9u1 install ok installed openjdk-8-jre-headless:amd64 openjdk-8-jre-headless 8u252-b09-1~deb9u1 install ok installed openmpi-bin openmpi-bin 2.0.2-2 install ok installed openmpi-common openmpi-common 2.0.2-2 install ok installed openms-common openms-common 1.11.1-5 install ok installed openssh-client openssh-client 1:7.4p1-10+deb9u7 install ok installed openssl openssl 1.1.0l-1~deb9u1 install ok installed paraclu paraclu 9-1+b2 install ok installed parafly parafly 0.0.2013.01.21-3+b1 install ok installed parallel parallel 20161222-1 install ok installed parsinsert parsinsert 1.04-2 install ok installed parsnp parsnp 1.2+dfsg-3 install ok installed passwd passwd 1:4.4-4.1 install ok installed patch patch 2.7.5-1+deb9u2 install ok installed pbalign pbalign 0.3.0-1 install ok installed pbbamtools pbbamtools 0.7.4+ds-1 install ok installed pbbarcode pbbarcode 0.8.0-4 install ok installed pbdagcon pbdagcon 0.3+20161121+ds-1 install ok installed pbgenomicconsensus pbgenomicconsensus 2.1.0-1 install ok installed pbh5tools pbh5tools 0.8.0+dfsg-5 install ok installed pbhoney pbhoney 15.8.24+dfsg-2 install ok installed pbjelly pbjelly 15.8.24+dfsg-2 install ok installed pbsim pbsim 1.0.3-2 install ok installed pbsuite pbsuite 15.8.24+dfsg-2 install ok installed pdb2pqr pdb2pqr 2.1.1+dfsg-2 install ok installed perl perl 5.24.1-3+deb9u7 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed perl-doc perl-doc 5.24.1-3+deb9u7 deinstall ok config-files perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed perl-tk perl-tk 1:804.033-1+b3 install ok installed perlprimer perlprimer 1.2.3-1 install ok installed perm perm 0.4.0-2 install ok installed phipack phipack 0.0.20160614-2 install ok installed phybin phybin 0.3-1+b1 install ok installed phylip phylip 1:3.696+dfsg-5 install ok installed phyml phyml 3:3.2.0+dfsg-7+b1 install ok installed physamp physamp 0.2.0-1+b1 install ok installed phyutility phyutility 2.7.3-1 install ok installed picard-tools picard-tools 2.8.1+dfsg-1 install ok installed piler piler 0~20140707-1+b1 install ok installed pinentry-curses pinentry-curses 1.0.0-2 install ok installed pirs pirs 2.0.2+dfsg-5.1+b1 install ok installed pirs-profiles pirs-profiles 2.0.2+dfsg-5.1 install ok installed pkg-config pkg-config 0.29-4+b1 install ok installed placnet placnet 1.03-2 install ok installed plasmidomics plasmidomics 0.2.0-5 install ok installed plast plast 2.3.1+dfsg-4 install ok installed plink plink 1.07-7 install ok installed plink1.9 plink1.9 1.90~b3.45-170113-1 install ok installed plip plip 1.3.3+dfsg-1 install ok installed po-debconf po-debconf 1.0.20 install ok installed poa poa 2.0+20060928-4+b1 install ok installed policykit-1 policykit-1 0.105-18+deb9u1 install ok installed poppler-data poppler-data 0.4.7-8 install ok installed populations populations 1.2.33+svn0120106-2.1+b1 install ok installed poretools poretools 0.6.0+dfsg-2 install ok installed pp-popularity-contest pp-popularity-contest 1.0.6-2+b4 install ok installed prank prank 0.0.150803-2 install ok installed predictnls predictnls 1.0.20-3 install ok installed predictprotein predictprotein 1.1.06-1 install ok installed prerex prerex 6.5.3-1+b2 install ok installed preview-latex-style preview-latex-style 11.90-1 install ok installed prime-phylo prime-phylo 1.0.11-4+b3 install ok installed primer3 primer3 2.3.7-3 install ok installed proalign proalign 0.603-2 install ok installed probabel probabel 0.4.5-3+b1 install ok installed probalign probalign 1.4-5 install ok installed probcons probcons 1.12-11 install ok installed procps procps 2:3.3.12-3+deb9u1 install ok installed proda proda 1.0-10 install ok installed prodigal prodigal 1:2.6.3-1+b1 install ok installed profbval profbval 1.0.22-4 install ok installed profisis profisis 1.0.11-3 install ok installed profnet-bval profnet-bval 1.0.22-4 install ok installed profnet-chop profnet-chop 1.0.22-4 install ok installed profnet-con profnet-con 1.0.22-4 install ok installed profnet-isis profnet-isis 1.0.22-4 install ok installed profnet-md profnet-md 1.0.22-4 install ok installed profnet-norsnet profnet-norsnet 1.0.22-4 install ok installed profnet-prof profnet-prof 1.0.22-4 install ok installed profnet-snapfun profnet-snapfun 1.0.22-4 install ok installed profphd profphd 1.0.40-1 install ok installed profphd-net profphd-net 1.0.22-4 install ok installed profphd-utils profphd-utils 1.0.10-3+b1 install ok installed proftmb proftmb 1.1.12-6+b1 install ok installed progressivemauve progressivemauve 1.2.0+4713-2+b2 install ok installed prosper prosper 1.00.4+cvs.2007.05.01-4.1 install ok installed proteinortho proteinortho 5.15+dfsg-1 install ok installed prottest prottest 3.4.2+dfsg-2 install ok installed ps2eps ps2eps 1.68+binaryfree-2 install ok installed psmisc psmisc 22.21-2.1+b2 install ok installed publicsuffix publicsuffix 20190415.1030-0+deb9u1 install ok installed pvm pvm 3.4.6-1+b2 install ok installed pycorrfit pycorrfit 0.9.9+dfsg-2 install ok installed pymol pymol 1.8.4.0+dfsg-1 install ok installed pymol-data pymol-data 1.8.4.0+dfsg-1 install ok installed pynast pynast 1.2.2-2 install ok installed pyqi pyqi 0.3.2+dfsg-2 install ok installed pyscanfcs pyscanfcs 0.2.3-3 install ok installed python python 2.7.13-2 install ok installed python-alabaster python-alabaster 0.7.8-1 install ok installed python-all python-all 2.7.13-2 install ok installed python-all-dev python-all-dev 2.7.13-2 install ok installed python-antlr python-antlr 2.7.7+dfsg-7 install ok installed python-astropy python-astropy 1.3-8 install ok installed python-avro python-avro 1.8.1+dfsg-1 install ok installed python-babel python-babel 2.3.4+dfsg.1-2 install ok installed python-babel-localedata python-babel-localedata 2.3.4+dfsg.1-2 install ok installed python-backports-shutil-get-terminal-size python-backports-shutil-get-terminal-size 1.0.0-3 install ok installed python-ball python-ball 1.4.3~beta1-3 install ok installed python-ballview python-ballview 1.4.3~beta1-3 install ok installed python-biom-format python-biom-format 2.1.5+dfsg-7 install ok installed python-biopython python-biopython 1.68+dfsg-3 install ok installed python-biopython-doc python-biopython-doc 1.68+dfsg-3 install ok installed python-bs4 python-bs4 4.5.3-1 install ok installed python-cairo python-cairo 1.8.8-2.2 install ok installed python-cffi-backend python-cffi-backend 1.9.1-2 install ok installed python-chardet python-chardet 2.3.0-2 install ok installed python-click python-click 6.6-1 install ok installed python-cogent python-cogent 1.9-9 install ok installed python-colorama python-colorama 0.3.7-1 install ok installed python-configobj python-configobj 5.0.6-2 install ok installed python-configparser python-configparser 3.3.0r2-2 install ok installed python-crypto python-crypto 2.6.1-7 install ok installed python-cryptography python-cryptography 1.7.1-3+deb9u2 install ok installed python-cvxopt python-cvxopt 1.1.4-1.5+deb9u1 install ok installed python-cycler python-cycler 0.10.0-1 install ok installed python-dateutil python-dateutil 2.5.3-2 install ok installed python-decorator python-decorator 4.0.11-1 install ok installed python-dendropy python-dendropy 4.2.0+dfsg-1 install ok installed python-dev python-dev 2.7.13-2 install ok installed python-docutils python-docutils 0.13.1+dfsg-2 install ok installed python-egenix-mxdatetime python-egenix-mxdatetime 3.2.9-1 install ok installed python-egenix-mxtools python-egenix-mxtools 3.2.9-1 install ok installed python-enum34 python-enum34 1.1.6-1 install ok installed python-funcsigs python-funcsigs 1.0.2-3 install ok installed python-functools32 python-functools32 3.2.3.2-3 install ok installed python-future python-future 0.15.2-4 install ok installed python-gdata python-gdata 2.0.18+dfsg1-2 install ok installed python-glade2 python-glade2 2.24.0-5.1 install ok installed python-gmpy python-gmpy 1.17-3 install ok installed python-gobject-2 python-gobject-2 2.28.6-13 install ok installed python-gtk2 python-gtk2 2.24.0-5.1 install ok installed python-h5py python-h5py 2.7.0-1 install ok installed python-html5lib python-html5lib 0.999999999-1 install ok installed python-htseq python-htseq 0.6.1p1-4 install ok installed python-idna python-idna 2.2-1 install ok installed python-imagesize python-imagesize 0.7.1-1 install ok installed python-imaging python-imaging 4.0.0-4+deb9u1 install ok installed python-intervaltree python-intervaltree 2.1.0-2 install ok installed python-intervaltree-bio python-intervaltree-bio 1.0.1-1 install ok installed python-ipaddress python-ipaddress 1.0.17-1 install ok installed python-ipython python-ipython 5.1.0-3 install ok installed python-ipython-genutils python-ipython-genutils 0.1.0-2 install ok installed python-iso8601 python-iso8601 0.1.11-1 install ok installed python-jdcal python-jdcal 1.0-1.2~deb9u1 install ok installed python-jinja2 python-jinja2 2.8-1 install ok installed python-joblib python-joblib 0.10.3+git55-g660fe5d-1 install ok installed python-kineticstools python-kineticstools 0.6.1+20161222-1 install ok installed python-lmfit python-lmfit 0.9.5+dfsg-2 install ok installed python-lxml python-lxml 3.7.1-1 install ok installed python-mako python-mako 1.0.6+ds1-2 install ok installed python-markupsafe python-markupsafe 0.23-3 install ok installed python-matplotlib python-matplotlib 2.0.0+dfsg1-2 install ok installed python-matplotlib-data python-matplotlib-data 2.0.0+dfsg1-2 install ok installed python-matplotlib-venn python-matplotlib-venn 0.11.5-1 install ok installed python-minimal python-minimal 2.7.13-2 install ok installed python-mock python-mock 2.0.0-3 install ok installed python-mpi4py python-mpi4py 2.0.0-2.1+deb9u1 install ok installed python-mpmath python-mpmath 0.19-3 install ok installed python-msgpack python-msgpack 0.4.8-1 install ok installed python-multipletau python-multipletau 0.1.7+ds-1 install ok installed python-mysqldb python-mysqldb 1.3.7-1.1 install ok installed python-networkx python-networkx 1.11-2 install ok installed python-nose python-nose 1.3.7-2 install ok installed python-numexpr python-numexpr 2.6.1-4 install ok installed python-numpy python-numpy 1:1.12.1-3 install ok installed python-openbabel python-openbabel 2.3.2+dfsg-3 install ok installed python-opengl python-opengl 3.1.0+dfsg-1 install ok installed python-openpyxl python-openpyxl 2.3.0-3 install ok installed python-openssl python-openssl 16.2.0-1 install ok installed python-pandas python-pandas 0.19.2-5.1 install ok installed python-pandas-lib python-pandas-lib 0.19.2-5.1 install ok installed python-pathlib2 python-pathlib2 2.2.0+really2.1.0-1 install ok installed python-patsy python-patsy 0.4.1+git34-ga5b54c2-1 install ok installed python-pbalign python-pbalign 0.3.0-1 install ok installed python-pbbanana python-pbbanana 15.8.24+dfsg-2 install ok installed python-pbcommand python-pbcommand 0.5.3-1 install ok installed python-pbconsensuscore python-pbconsensuscore 1.0.2-2 install ok installed python-pbcore python-pbcore 1.2.11+dfsg-1 install ok installed python-pbgenomicconsensus python-pbgenomicconsensus 2.1.0-1 install ok installed python-pbh5tools python-pbh5tools 0.8.0+dfsg-5 install ok installed python-pbr python-pbr 1.10.0-1 install ok installed python-pbsuite-utils python-pbsuite-utils 15.8.24+dfsg-2 install ok installed python-pexpect python-pexpect 4.2.1-1 install ok installed python-pickleshare python-pickleshare 0.7.4-1 install ok installed python-pil:amd64 python-pil 4.0.0-4+deb9u1 install ok installed python-pkg-resources python-pkg-resources 33.1.1-1 install ok installed python-ply python-ply 3.9-1 install ok installed python-pmw python-pmw 1.3.2-6 install ok installed python-prompt-toolkit python-prompt-toolkit 1.0.9-1 install ok installed python-ptyprocess python-ptyprocess 0.5.1-1 install ok installed python-py python-py 1.4.32-3 install ok installed python-pyasn1 python-pyasn1 0.1.9-2 install ok installed python-pyfits python-pyfits 1:3.4-4 install ok installed python-pyglet python-pyglet 1.1.4.dfsg-3 install ok installed python-pygments python-pygments 2.2.0+dfsg-1 install ok installed python-pygraphviz python-pygraphviz 1.4~rc1-1 install ok installed python-pyparsing python-pyparsing 2.1.10+dfsg1-1 install ok installed python-pyrex python-pyrex 0.9.9-1 install ok installed python-pysam python-pysam 0.10.0+ds-2 install ok installed python-pysqlite2 python-pysqlite2 2.7.0-1 install ok installed python-pytest python-pytest 3.0.6-1 install ok installed python-qcli python-qcli 0.1.1-1 install ok installed python-qt4 python-qt4 4.11.4+dfsg-2+b1 install ok installed python-renderpm:amd64 python-renderpm 3.3.0-2+deb9u1 install ok installed python-reportlab python-reportlab 3.3.0-2+deb9u1 install ok installed python-reportlab-accel:amd64 python-reportlab-accel 3.3.0-2+deb9u1 install ok installed python-requests python-requests 2.12.4-1 install ok installed python-roman python-roman 2.0.0-2 install ok installed python-rpy2 python-rpy2 2.8.5-1 install ok installed python-ruffus python-ruffus 2.6.3+dfsg-4 install ok installed python-scipy python-scipy 0.18.1-2 install ok installed python-seaborn python-seaborn 0.7.1-4 install ok installed python-setuptools python-setuptools 33.1.1-1 install ok installed python-simplegeneric python-simplegeneric 0.8.1-1 install ok installed python-simplejson python-simplejson 3.10.0-1 install ok installed python-singledispatch python-singledispatch 3.4.0.3-2 install ok installed python-sip python-sip 4.18.1+dfsg-2 install ok installed python-six python-six 1.10.0-3 install ok installed python-sklearn python-sklearn 0.18-5 install ok installed python-sklearn-lib python-sklearn-lib 0.18-5 install ok installed python-sortedcontainers python-sortedcontainers 1.5.7-1 install ok installed python-sphinx python-sphinx 1.4.9-2 install ok installed python-sqlalchemy python-sqlalchemy 1.0.15+ds1-1 install ok installed python-sqlalchemy-ext python-sqlalchemy-ext 1.0.15+ds1-1 install ok installed python-statsmodels python-statsmodels 0.8.0~rc1+git59-gef47cd9-5 install ok installed python-statsmodels-lib python-statsmodels-lib 0.8.0~rc1+git59-gef47cd9-5 install ok installed python-subprocess32 python-subprocess32 3.2.7-2 install ok installed python-support python-support 1.0.15 install ok installed python-sympy python-sympy 1.0-3 install ok installed python-sympy-doc python-sympy-doc 1.0-3 install ok installed python-tables python-tables 3.3.0-5 install ok installed python-tables-data python-tables-data 3.3.0-5 install ok installed python-tables-lib python-tables-lib 3.3.0-5 install ok installed python-tk python-tk 2.7.13-1 install ok installed python-traitlets python-traitlets 4.3.1-1 install ok installed python-tz python-tz 2016.7-0.3 install ok installed python-urllib3 python-urllib3 1.19.1-1 install ok installed python-wcwidth python-wcwidth 0.1.7+dfsg1-1 install ok installed python-webencodings python-webencodings 0.5-2 install ok installed python-wxgtk3.0 python-wxgtk3.0 3.0.2.0+dfsg-4 install ok installed python-wxversion python-wxversion 3.0.2.0+dfsg-4 install ok installed python-xlrd python-xlrd 1.0.0-1 install ok installed python-xlwt python-xlwt 0.7.5+debian1-1 install ok installed python-yaml python-yaml 3.12-1 install ok installed python2.7 python2.7 2.7.13-2+deb9u3 install ok installed python2.7-dev python2.7-dev 2.7.13-2+deb9u3 install ok installed python2.7-minimal python2.7-minimal 2.7.13-2+deb9u3 install ok installed python3 python3 3.5.3-1 install ok installed python3-biopython python3-biopython 1.68+dfsg-3 install ok installed python3-bs4 python3-bs4 4.5.3-1 install ok installed python3-bz2file python3-bz2file 0.98-1 install ok installed python3-chardet python3-chardet 2.3.0-2 install ok installed python3-cutadapt python3-cutadapt 1.12-2 install ok installed python3-decorator python3-decorator 4.0.11-1 install ok installed python3-dendropy python3-dendropy 4.2.0+dfsg-1 install ok installed python3-html5lib python3-html5lib 0.999999999-1 install ok installed python3-jdcal python3-jdcal 1.0-1.2~deb9u1 install ok installed python3-lxml python3-lxml 3.7.1-1 install ok installed python3-minimal python3-minimal 3.5.3-1 install ok installed python3-networkx python3-networkx 1.11-2 install ok installed python3-nose python3-nose 1.3.7-2 install ok installed python3-numpy python3-numpy 1:1.12.1-3 install ok installed python3-openpyxl python3-openpyxl 2.3.0-3 install ok installed python3-pil:amd64 python3-pil 4.0.0-4+deb9u1 install ok installed python3-pkg-resources python3-pkg-resources 33.1.1-1 install ok installed python3-py python3-py 1.4.32-3 install ok installed python3-pymummer python3-pymummer 0.10.1-1 install ok installed python3-pysam python3-pysam 0.10.0+ds-2 install ok installed python3-pytest python3-pytest 3.0.6-1 install ok installed python3-renderpm:amd64 python3-renderpm 3.3.0-2+deb9u1 install ok installed python3-reportlab python3-reportlab 3.3.0-2+deb9u1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.3.0-2+deb9u1 install ok installed python3-scipy python3-scipy 0.18.1-2 install ok installed python3-screed python3-screed 0.9-2 install ok installed python3-six python3-six 1.10.0-3 install ok installed python3-webencodings python3-webencodings 0.5-2 install ok installed python3-xopen python3-xopen 0.1.1-1 install ok installed python3-yaml python3-yaml 3.12-1 deinstall ok config-files python3.4 python3.4 3.4.2-1 deinstall ok config-files python3.4-minimal python3.4-minimal 3.4.2-1 install ok installed python3.5 python3.5 3.5.3-1+deb9u1 install ok installed python3.5-minimal python3.5-minimal 3.5.3-1+deb9u1 install ok installed qdbus qdbus 4:4.8.7+dfsg-11 install ok installed qiime qiime 1.8.0+dfsg-4 install ok installed qiime-data qiime-data 1.8.0+dfsg-4 install ok installed qt-at-spi:amd64 qt-at-spi 0.4.0-5 install ok installed qt5-gtk-platformtheme:amd64 qt5-gtk-platformtheme 5.7.1+dfsg-3+deb9u2 install ok installed qtchooser qtchooser 63-g13a3d08-1 install ok installed qtcore4-l10n qtcore4-l10n 4:4.8.7+dfsg-11 install ok installed qtltools qtltools 1.1+dfsg-1 install ok installed qttranslations5-l10n qttranslations5-l10n 5.7.1~20161021-1 install ok installed r-base r-base 3.3.3-1 install ok installed r-base-core r-base-core 3.3.3-1 install ok installed r-base-dev r-base-dev 3.3.3-1 install ok installed r-base-html r-base-html 3.3.3-1 install ok installed r-bioc-annotate r-bioc-annotate 1.52.1+dfsg-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.36.1-2 install ok installed r-bioc-annotationhub r-bioc-annotationhub 2.6.4-1 install ok installed r-bioc-biobase r-bioc-biobase 2.34.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.20.0-1 install ok installed r-bioc-biocinstaller r-bioc-biocinstaller 1.24.0-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.8.1-1 install ok installed r-bioc-biomart r-bioc-biomart 2.30.0-1 install ok installed r-bioc-biomformat r-bioc-biomformat 1.2.0-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.42.1-1 install ok installed r-bioc-biovizbase r-bioc-biovizbase 1.22.0-2 install ok installed r-bioc-bsgenome r-bioc-bsgenome 1.42.0-2 install ok installed r-bioc-cummerbund r-bioc-cummerbund 2.16.0-2 install ok installed r-bioc-deseq2 r-bioc-deseq2 1.14.1-1 install ok installed r-bioc-dnacopy r-bioc-dnacopy 1.48.0-1 install ok installed r-bioc-ebseq r-bioc-ebseq 1.14.0-1 install ok installed r-bioc-edger r-bioc-edger 3.14.0+dfsg-1 install ok installed r-bioc-ensembldb r-bioc-ensembldb 1.6.2-1 install ok installed r-bioc-genefilter r-bioc-genefilter 1.56.0-1 install ok installed r-bioc-geneplotter r-bioc-geneplotter 1.52.0-2 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.10.3-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.10.0-1+b1 install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.26.2-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.26.2-1+b1 install ok installed r-bioc-gviz r-bioc-gviz 1.18.1-1 install ok installed r-bioc-hilbertvis r-bioc-hilbertvis 1.32.0-1 install ok installed r-bioc-interactivedisplaybase r-bioc-interactivedisplaybase 1.12.0-1 install ok installed r-bioc-iranges r-bioc-iranges 2.8.1-1+b1 install ok installed r-bioc-limma r-bioc-limma 3.30.8+dfsg-1 install ok installed r-bioc-mergeomics r-bioc-mergeomics 1.2.0-1 install ok installed r-bioc-metagenomeseq r-bioc-metagenomeseq 1.16.0-2 install ok installed r-bioc-multtest r-bioc-multtest 2.30.0-1 install ok installed r-bioc-phyloseq r-bioc-phyloseq 1.19.1-2 install ok installed r-bioc-qvalue r-bioc-qvalue 2.6.0-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 1.26.1-2+b1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.34.1-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.12.1-2+b1 install ok installed r-bioc-shortread r-bioc-shortread 1.32.0-1+b1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.4.0-2 install ok installed r-bioc-variantannotation r-bioc-variantannotation 1.20.2-1+b1 install ok installed r-bioc-xvector r-bioc-xvector 0.14.0-1+b1 install ok installed r-cran-abind r-cran-abind 1.4-5-1 install ok installed r-cran-acepack r-cran-acepack 1.4.1-1 install ok installed r-cran-ade4 r-cran-ade4 1.7-5-1 install ok installed r-cran-adegenet r-cran-adegenet 2.0.1-1 install ok installed r-cran-adegraphics r-cran-adegraphics 1.0-6-1 install ok installed r-cran-adephylo r-cran-adephylo 1.1-10-2 install ok installed r-cran-ape r-cran-ape 4.0-1 install ok installed r-cran-assertthat r-cran-assertthat 0.1-1 install ok installed r-cran-backports r-cran-backports 1.0.5-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-1 install ok installed r-cran-batchjobs r-cran-batchjobs 1.6-1 install ok installed r-cran-bbmisc r-cran-bbmisc 1.10-1 install ok installed r-cran-bbmle r-cran-bbmle 1.0.18-2 install ok installed r-cran-bio3d r-cran-bio3d 2.3-1-1 install ok installed r-cran-bitops r-cran-bitops 1.0-6-1 install ok installed r-cran-blockmodeling r-cran-blockmodeling 0.1.8-1 install ok installed r-cran-bold r-cran-bold 0.4.0-1 install ok installed r-cran-boot r-cran-boot 1.3-18-2 install ok installed r-cran-brew r-cran-brew 1.0-6-1 install ok installed r-cran-catools r-cran-catools 1.17.1-1+b1 install ok installed r-cran-checkmate r-cran-checkmate 1.8.2-1 install ok installed r-cran-chron r-cran-chron 2.3-49-1 install ok installed r-cran-class r-cran-class 7.3-14-1 install ok installed r-cran-cluster r-cran-cluster 2.0.5-1 install ok installed r-cran-coda r-cran-coda 0.19-1-1 install ok installed r-cran-codetools r-cran-codetools 0.2-15-1 install ok installed r-cran-colorspace r-cran-colorspace 1.3-2-1 install ok installed r-cran-combinat r-cran-combinat 0.0-8-4 install ok installed r-cran-crayon r-cran-crayon 1.3.2-1 install ok installed r-cran-curl r-cran-curl 2.3-1 install ok installed r-cran-data.table r-cran-data.table 1.10.0-1 install ok installed r-cran-dbi r-cran-dbi 0.5-1-1 install ok installed r-cran-deldir r-cran-deldir 0.1-12-1 install ok installed r-cran-dichromat r-cran-dichromat 2.0.0-3 install ok installed r-cran-digest r-cran-digest 0.6.11-1 install ok installed r-cran-distory r-cran-distory 1.4.2-1 install ok installed r-cran-domc r-cran-domc 1.3.4-1 install ok installed r-cran-doparallel r-cran-doparallel 1.0.10-3 install ok installed r-cran-dplyr r-cran-dplyr 0.5.0-1 install ok installed r-cran-ellipse r-cran-ellipse 0.3-8-1 install ok installed r-cran-evaluate r-cran-evaluate 0.10-1 install ok installed r-cran-fail r-cran-fail 1.3-1 install ok installed r-cran-fastcluster r-cran-fastcluster 1.1.22-1 install ok installed r-cran-fastmatch r-cran-fastmatch 1.0-4-1 install ok installed r-cran-fields r-cran-fields 8.10-1 install ok installed r-cran-foreach r-cran-foreach 1.4.3-1 install ok installed r-cran-foreign r-cran-foreign 0.8.67-1 install ok installed r-cran-formula r-cran-formula 1.2-1-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-1 install ok installed r-cran-futile.options r-cran-futile.options 1.0.0-2 install ok installed r-cran-future r-cran-future 1.2.0-1 install ok installed r-cran-g.data r-cran-g.data 2.4-1 install ok installed r-cran-gam r-cran-gam 1.14-1 install ok installed r-cran-gdata r-cran-gdata 2.17.0-1 install ok installed r-cran-genabel r-cran-genabel 1.8-0-1+b1 install ok installed r-cran-genabel.data r-cran-genabel.data 1.0.0-1 install ok installed r-cran-getopt r-cran-getopt 1.20.0-2 install ok installed r-cran-ggplot2 r-cran-ggplot2 2.2.1-2 install ok installed r-cran-glmnet r-cran-glmnet 2.0-5-1 install ok installed r-cran-globals r-cran-globals 0.8.0-1 install ok installed r-cran-gmodels r-cran-gmodels 2.16.2-2 install ok installed r-cran-googlevis r-cran-googlevis 0.6.2-1 install ok installed r-cran-gplots r-cran-gplots 3.0.1-2 install ok installed r-cran-gridbase r-cran-gridbase 0.4-7-2 install ok installed r-cran-gridextra r-cran-gridextra 2.2.1-1 install ok installed r-cran-gtable r-cran-gtable 0.2.0-1 install ok installed r-cran-gtools r-cran-gtools 3.5.0-1 install ok installed r-cran-highr r-cran-highr 0.6-1 install ok installed r-cran-hmisc r-cran-hmisc 4.0-2-1 install ok installed r-cran-htmltable r-cran-htmltable 1.7-2 install ok installed r-cran-htmltools r-cran-htmltools 0.3.5-2 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 0.8-1 install ok installed r-cran-httpuv r-cran-httpuv 1.3.3-3 install ok installed r-cran-httr r-cran-httr 1.2.1-1 install ok installed r-cran-hwriter r-cran-hwriter 1.3.2-1 install ok installed r-cran-igraph r-cran-igraph 1.0.1-1+deb9u1 install ok installed r-cran-inline r-cran-inline 0.3.14-1 install ok installed r-cran-irlba r-cran-irlba 2.1.2-1 install ok installed r-cran-iterators r-cran-iterators 1.0.8-1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.2-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-15-2 install ok installed r-cran-knitr r-cran-knitr 1.15.1-1 install ok installed r-cran-labeling r-cran-labeling 0.3-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.1.9-1 install ok installed r-cran-lattice r-cran-lattice 0.20-34-1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-28-2 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.0-1 install ok installed r-cran-learnbayes r-cran-learnbayes 2.15-3 install ok installed r-cran-listenv r-cran-listenv 0.6.0-1 install ok installed r-cran-littler r-cran-littler 0.3.1-1 install ok installed r-cran-luminescence r-cran-luminescence 0.6.4-1 install ok installed r-cran-magrittr r-cran-magrittr 1.5-3 install ok installed r-cran-mapproj r-cran-mapproj 1.2-4-1 install ok installed r-cran-maps r-cran-maps 3.1.1-1 install ok installed r-cran-markdown r-cran-markdown 0.7.7-1 install ok installed r-cran-mass r-cran-mass 7.3-45-1 install ok installed r-cran-matrix r-cran-matrix 1.2-7.1-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.51.0-1 install ok installed r-cran-memoise r-cran-memoise 1.0.0-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-16-1 install ok installed r-cran-mime r-cran-mime 0.5-1 install ok installed r-cran-minpack.lm r-cran-minpack.lm 1.2-1-1 install ok installed r-cran-multicore r-cran-multicore 0.2-1 install ok installed r-cran-munsell r-cran-munsell 0.4.3-1 install ok installed r-cran-nlme r-cran-nlme 3.1.129-1 install ok installed r-cran-nmf r-cran-nmf 0.20.6-1 install ok installed r-cran-nnet r-cran-nnet 7.3-12-1 install ok installed r-cran-numderiv r-cran-numderiv 2016.8-1-1 install ok installed r-cran-openssl r-cran-openssl 0.9.6-1 install ok installed r-cran-optparse r-cran-optparse 1.3.2-1 install ok installed r-cran-permute r-cran-permute 0.9-4-1 install ok installed r-cran-phangorn r-cran-phangorn 2.1.1-1 install ok installed r-cran-phylobase r-cran-phylobase 0.8.2-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-1 install ok installed r-cran-pkgmaker r-cran-pkgmaker 0.22-1 install ok installed r-cran-plyr r-cran-plyr 1.8.4-1 install ok installed r-cran-praise r-cran-praise 1.0.0-1 install ok installed r-cran-prettyunits r-cran-prettyunits 1.0.2-1 install ok installed r-cran-progress r-cran-progress 1.1.2-1 install ok installed r-cran-proto r-cran-proto 1.0.0-1 install ok installed r-cran-pscbs r-cran-pscbs 0.62.0-1 install ok installed r-cran-qtl r-cran-qtl 1.40-8-1 install ok installed r-cran-quadprog r-cran-quadprog 1.5-5-2 install ok installed r-cran-r.cache r-cran-r.cache 0.12.0-2 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.7.1-1 install ok installed r-cran-r.oo r-cran-r.oo 1.21.0-1 install ok installed r-cran-r.utils r-cran-r.utils 2.5.0-1 install ok installed r-cran-r6 r-cran-r6 2.2.0-2 install ok installed r-cran-randomforest r-cran-randomforest 4.6-12-1 install ok installed r-cran-raster r-cran-raster 2.5-8-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-1 install ok installed r-cran-rcpp r-cran-rcpp 0.12.9-1 install ok installed r-cran-rcppgsl r-cran-rcppgsl 0.3.2-2 install ok installed r-cran-rcurl r-cran-rcurl 1.95-4.8-2 install ok installed r-cran-readxl r-cran-readxl 0.1.1-1+deb9u2 install ok installed r-cran-registry r-cran-registry 0.3-1 install ok installed r-cran-rentrez r-cran-rentrez 1.0.4-1 install ok installed r-cran-reshape r-cran-reshape 0.8.6-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.2-1 install ok installed r-cran-rgl r-cran-rgl 0.96.0-1 install ok installed r-cran-ritis r-cran-ritis 0.5.4-1 install ok installed r-cran-rlumshiny r-cran-rlumshiny 0.1.1-1 install ok installed r-cran-rncl r-cran-rncl 0.8.2-1 install ok installed r-cran-rnexml r-cran-rnexml 2.0.7-1 install ok installed r-cran-rngtools r-cran-rngtools 1.2.4-2 install ok installed r-cran-rocr r-cran-rocr 1.0-7-2 install ok installed r-cran-rotl r-cran-rotl 3.0.1-1 install ok installed r-cran-rpart r-cran-rpart 4.1-10-2 install ok installed r-cran-rredlist r-cran-rredlist 0.2.0-1 install ok installed r-cran-rsqlite r-cran-rsqlite 1.1-2-1 install ok installed r-cran-scales r-cran-scales 0.4.1-1 install ok installed r-cran-scatterd3 r-cran-scatterd3 0.8.1+dfsg-1 install ok installed r-cran-segmented r-cran-segmented 0.5-1.4-1 install ok installed r-cran-sendmailr r-cran-sendmailr 1.2-1-1 install ok installed r-cran-seqinr r-cran-seqinr 3.3-3-1 install ok installed r-cran-shape r-cran-shape 1.4.2-1 install ok installed r-cran-shiny r-cran-shiny 1.0.0+dfsg-1 install ok installed r-cran-shinybs r-cran-shinybs 0.61-1 install ok installed r-cran-snow r-cran-snow 1:0.4.2-1 install ok installed r-cran-solrium r-cran-solrium 0.4.0-1 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.5-1 install ok installed r-cran-sp r-cran-sp 1:1.2-4-1 install ok installed r-cran-spam r-cran-spam 1.4-0-1 install ok installed r-cran-spatial r-cran-spatial 7.3-11-1 install ok installed r-cran-spdep r-cran-spdep 0.6-9-1 install ok installed r-cran-stringi r-cran-stringi 1.1.2-1 install ok installed r-cran-stringr r-cran-stringr 1.1.0-1 install ok installed r-cran-survival r-cran-survival 2.40-1-1 install ok installed r-cran-taxize r-cran-taxize 0.8.0-1 install ok installed r-cran-tcltk2 r-cran-tcltk2 1.2-11-1 install ok installed r-cran-testthat r-cran-testthat 1.0.2-2 install ok installed r-cran-tibble r-cran-tibble 1.2-1 install ok installed r-cran-tidyr r-cran-tidyr 0.6.1-1 install ok installed r-cran-treescape r-cran-treescape 1.10.18-6 install ok installed r-cran-uuid r-cran-uuid 0.1.2-8 install ok installed r-cran-vegan r-cran-vegan 2.4-2-1 install ok installed r-cran-viridis r-cran-viridis 0.3.4-1 install ok installed r-cran-xml r-cran-xml 3.98-1.5-1 install ok installed r-cran-xml2 r-cran-xml2 1.1.0-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-2-1 install ok installed r-cran-yaml r-cran-yaml 2.1.14-1 install ok installed r-cran-zoo r-cran-zoo 1.7-14-1 install ok installed r-doc-html r-doc-html 3.3.3-1 install ok installed r-mathlib r-mathlib 3.3.3-1 install ok installed r-other-mott-happy.hbrem r-other-mott-happy.hbrem 2.4-1 install ok installed r-recommended r-recommended 3.3.3-1 install ok installed rake rake 10.5.0-2+deb9u1 install ok installed rambo-k rambo-k 1.21+dfsg-1 install ok installed rapmap rapmap 0.4.0+dfsg-2 install ok installed rasmol rasmol 2.7.5.2-2 install ok installed raster3d raster3d 3.0-3-2+b1 install ok installed rate4site rate4site 3.0.0-4+b1 install ok installed raxml raxml 8.2.9+dfsg-1+b1 install ok installed ray ray 2.3.1-4+b1 install ok installed rdp-alignment rdp-alignment 1.2.0-2 install ok installed rdp-classifier rdp-classifier 2.10.2-1 install ok installed rdp-classifier-doc rdp-classifier-doc 2.10.2-1 install ok installed rdp-readseq rdp-readseq 2.0.2-2 install ok installed readline-common readline-common 7.0-3 install ok installed readseq readseq 1-11+b1 install ok installed reapr reapr 1.0.18+dfsg-3 install ok installed relion-bin relion-bin 1.4+dfsg-2+b2 install ok installed rename rename 0.20-4 install ok installed repeatmasker-recon repeatmasker-recon 1.08-3+b1 install ok installed reprof reprof 1.0.1-4 install ok installed rhino rhino 1.7.7.1-1 install ok installed rna-star rna-star 2.5.2b+dfsg-1 install ok installed rnahybrid rnahybrid 2.1.2-1+b1 install ok installed roary roary 3.8.0+dfsg-1 install ok installed rsem rsem 1.2.31+dfsg-1 install ok installed rsync rsync 3.1.2-1+deb9u2 install ok installed rtax rtax 0.984-5 install ok installed ruby ruby 1:2.3.3 install ok installed ruby-did-you-mean ruby-did-you-mean 1.0.0-2 install ok installed ruby-minitest ruby-minitest 5.9.0-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 0.3.0-1 install ok installed ruby-test-unit ruby-test-unit 3.1.7-2 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed ruby2.3 ruby2.3 2.3.3-1+deb9u8 install ok installed rubygems-integration rubygems-integration 1.11 install ok installed saint saint 2.5.0+dfsg-2+b1 install ok installed salmon salmon 0.7.2+ds1-2+b1 install ok installed samtools samtools 1.3.1-3 install ok installed sane-utils sane-utils 1.0.25-4.1 install ok installed science-biology science-biology 1.7 install ok installed science-config science-config 1.7 install ok installed science-tasks science-tasks 1.7 install ok installed scrm scrm 1.7.2-1+b1 install ok installed scythe scythe 0.994-4 install ok installed seaview seaview 1:4.6.1.2-2 install ok installed sed sed 4.4-1 install ok installed seer seer 1.1.2-3 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed seqan-apps seqan-apps 2.3.1+dfsg-4 install ok installed seqprep seqprep 1.3.2-1 install ok installed seqtk seqtk 1.2-1 install ok installed sga sga 0.10.15-2 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.8-1+deb9u1 install ok installed sibsim4 sibsim4 0.20-2+b1 install ok installed sickle sickle 1.33-1+b1 install ok installed sigma-align sigma-align 1.1.3-4+b1 install ok installed sim4 sim4 0.0.20121010-4 install ok installed sim4db sim4db 0~20150903+r2013-3 install ok installed smalt smalt 0.7.6-6 install ok installed smithwaterman smithwaterman 0.0+20160702-1+b1 install ok installed smrtanalysis smrtanalysis 0~20161126 install ok installed snap snap 2013-11-29-6 install ok installed snap-aligner snap-aligner 1.0~beta.18+dfsg-1 install ok installed sniffles sniffles 1.0.2+ds-1 install ok installed snp-sites snp-sites 2.3.2-1 install ok installed snpomatic snpomatic 1.0-3+b1 install ok installed soapdenovo soapdenovo 1.05-3 install ok installed soapdenovo2 soapdenovo2 240+dfsg1-2 install ok installed sortmerna sortmerna 2.1-1+b1 install ok installed spaced spaced 1.0.2+dfsg-1+b1 install ok installed spades spades 3.9.1+dfsg-1 install ok installed sphinx-common sphinx-common 1.4.9-2 install ok installed sphinx-doc sphinx-doc 1.4.9-2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 0.1.9-1 install ok installed sprai sprai 0.9.9.22+dfsg-1 install ok installed spread-phy spread-phy 1.0.7+dfsg-1 install ok installed sqlite3 sqlite3 3.16.2-5+deb9u1 install ok installed squizz squizz 0.99c+dfsg-1 install ok installed sra-toolkit sra-toolkit 2.8.1-2+dfsg-2 install ok installed sra-toolkit-libs0 sra-toolkit-libs0 2.3.5-2+dfsg-1 install ok installed srst2 srst2 0.2.0-4 install ok installed ssake ssake 3.8.4-1 install ok installed ssl-cert ssl-cert 1.0.39 install ok installed sspace sspace 2.1.1+dfsg-2 install ok installed ssw-align ssw-align 1.1-1+b1 install ok installed stacks stacks 1.44-2+b1 install ok installed staden staden 2.0.0+b11-2+b1 install ok installed staden-common staden-common 2.0.0+b11-2 install ok installed staden-io-lib-utils staden-io-lib-utils 1.14.8-2 install ok installed startpar startpar 0.59-3.1 install ok installed steptalk steptalk 0.10.0-6+b3 install ok installed subread subread 1.5.1+dfsg-4 install ok installed suitename suitename 0.3.070628-1+b1 install ok installed sumaclust sumaclust 1.0.20-1+b1 install ok installed sumatra sumatra 1.0.20-1+b1 install ok installed sumtrees sumtrees 4.2.0+dfsg-1 install ok installed surankco surankco 0.0.r5+dfsg-1 install ok installed swarm swarm 2.1.12+dfsg-1 install ok installed swi-prolog swi-prolog 7.2.3+dfsg-6 install ok installed swi-prolog-nox swi-prolog-nox 7.2.3+dfsg-6 install ok installed swi-prolog-x swi-prolog-x 7.2.3+dfsg-6 install ok installed sysstat sysstat 11.4.3-2 install ok installed systemd systemd 232-25+deb9u12 install ok installed systemd-sysv systemd-sysv 232-25+deb9u12 install ok installed sysv-rc sysv-rc 2.88dsf-59.9 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed t-coffee t-coffee 11.00.8cbe486-5 install ok installed t1utils t1utils 1.39-2 install ok installed tabix tabix 1.3.2-2 install ok installed tantan tantan 13-4 install ok installed tar tar 1.29b-1.1 install ok installed tasksel tasksel 3.39 install ok installed tasksel-data tasksel-data 3.39 install ok installed tcl tcl 8.6.0+9 install ok installed tcl8.6 tcl8.6 8.6.6+dfsg-1+b1 install ok installed tcllib tcllib 1.18-dfsg-3 install ok installed tcpd tcpd 7.6.q-26 install ok installed tex-common tex-common 6.06 install ok installed tex-gyre tex-gyre 20160520-1 install ok installed texlive-base texlive-base 2016.20170123-5 install ok installed texlive-binaries texlive-binaries 2016.20160513.41080.dfsg-2+deb9u1 install ok installed texlive-extra-utils texlive-extra-utils 2016.20170123-5 install ok installed texlive-font-utils texlive-font-utils 2016.20170123-5 install ok installed texlive-fonts-extra texlive-fonts-extra 2016.20170123-5 install ok installed texlive-fonts-extra-doc texlive-fonts-extra-doc 2016.20170123-5 install ok installed texlive-fonts-recommended texlive-fonts-recommended 2016.20170123-5 install ok installed texlive-fonts-recommended-doc texlive-fonts-recommended-doc 2016.20170123-5 install ok installed texlive-generic-extra texlive-generic-extra 2016.20170123-5 install ok installed texlive-generic-recommended texlive-generic-recommended 2016.20170123-5 install ok installed texlive-latex-base texlive-latex-base 2016.20170123-5 install ok installed texlive-latex-base-doc texlive-latex-base-doc 2016.20170123-5 install ok installed texlive-latex-extra texlive-latex-extra 2016.20170123-5 install ok installed texlive-latex-extra-doc texlive-latex-extra-doc 2016.20170123-5 install ok installed texlive-latex-recommended texlive-latex-recommended 2016.20170123-5 install ok installed texlive-latex-recommended-doc texlive-latex-recommended-doc 2016.20170123-5 deinstall ok config-files texlive-math-extra texlive-math-extra 2014.20141024-1 install ok installed texlive-pictures texlive-pictures 2016.20170123-5 install ok installed texlive-pictures-doc texlive-pictures-doc 2016.20170123-5 install ok installed texlive-pstricks texlive-pstricks 2016.20170123-5 install ok installed texlive-pstricks-doc texlive-pstricks-doc 2016.20170123-5 install ok installed texlive-science texlive-science 2016.20170123-5 install ok installed texlive-science-doc texlive-science-doc 2016.20170123-5 install ok installed theseus theseus 3.3.0-5+b1 install ok installed tigr-glimmer tigr-glimmer 3.02b-1 install ok installed time time 1.7-25.1+b1 install ok installed tipa tipa 2:1.3-20 install ok installed tk tk 8.6.0+9 install ok installed tk-table:amd64 tk-table 2.10-3 install ok installed tk8.6 tk8.6 8.6.6-1+b1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-3 install ok installed tklib tklib 0.6-3 install ok installed tm-align tm-align 20160521+dfsg-2 install ok installed tophat tophat 2.1.1+dfsg-2+b2 deinstall ok config-files topp topp 1.11.1-5 install ok installed toppred toppred 1.10-4 install ok installed transdecoder transdecoder 3.0.1+dfsg-1 install ok installed transrate-tools transrate-tools 1.0.0-1+b1 install ok installed transtermhp transtermhp 2.09-3+b1 install ok installed tree-puzzle tree-puzzle 5.2-8+b3 install ok installed tree-puzzle-doc tree-puzzle-doc 5.2-8 install ok installed treeview treeview 1.1.6.4+dfsg1-2 install ok installed treeviewx treeviewx 0.5.1+20100823-4 install ok installed trimmomatic trimmomatic 0.36+dfsg-1 install ok installed trinityrnaseq trinityrnaseq 2.2.0+dfsg-2+b1 install ok installed trinityrnaseq-examples trinityrnaseq-examples 2.2.0+dfsg-2 install ok installed ttf-adf-accanthis ttf-adf-accanthis 0.20090423-2 install ok installed ttf-adf-gillius ttf-adf-gillius 0.20090423-2 install ok installed ttf-adf-universalis ttf-adf-universalis 0.20090423-2 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8 install ok installed ttf-dejavu ttf-dejavu 2.37-1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.37-1 install ok installed ttf-dejavu-extra ttf-dejavu-extra 2.37-1 install ok installed ttf-liberation ttf-liberation 1:1.07.4-2 install ok installed tzdata tzdata 2020a-0+deb9u1 install ok installed uc-echo uc-echo 1.12-9+b1 install ok installed ucf ucf 3.0036 install ok installed udev udev 232-25+deb9u12 install ok installed unzip unzip 6.0-21+deb9u2 install ok installed update-inetd update-inetd 4.44 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed varna varna 3-93+ds-1 install ok installed vcftools vcftools 0.1.14+dfsg-4+deb9u1 install ok installed velvet velvet 1.2.10+dfsg1-3+b1 install ok installed velvetoptimiser velvetoptimiser 2.2.5-5 install ok installed vprerex vprerex 6.5.3-1+b2 install ok installed vsearch vsearch 2.3.4-1 install ok installed wigeon wigeon 20101212+dfsg1-1 install ok installed wise wise 2.4.1-19 install ok installed wise-data wise-data 2.4.1-19 install ok installed x11-common x11-common 1:7.7+19 install ok installed x11-utils x11-utils 7.7+3+b1 install ok installed x11-xserver-utils x11-xserver-utils 7.7+7+b1 install ok installed x11proto-core-dev x11proto-core-dev 7.0.31-1 install ok installed x11proto-input-dev x11proto-input-dev 2.3.2-1 install ok installed x11proto-kb-dev x11proto-kb-dev 1.0.7-1 install ok installed xauth xauth 1:1.0.9-1+b2 install ok installed xbitmaps xbitmaps 1.1.1-2 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2+b1 install ok installed xdg-utils xdg-utils 1.1.1-1+deb9u2 install ok installed xfonts-100dpi xfonts-100dpi 1:1.0.4+nmu1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2 install ok installed xfonts-utils xfonts-utils 1:7.7+4 install ok installed xkb-data xkb-data 2.19-1+deb9u1 install ok installed xml-core xml-core 0.17 install ok installed xorg-sgml-doctools xorg-sgml-doctools 1:1.11-1 install ok installed xsltproc xsltproc 1.1.29-2.1+deb9u2 install ok installed xterm xterm 327-2 install ok installed xtrans-dev xtrans-dev 1.3.5-1 install ok installed xz-utils xz-utils 5.2.2-1.2+b1 install ok installed zalign zalign 0.9.1-2+b3 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.8.dfsg-5 39m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 39m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', 'remove', 'abacas', 'abyss', 'acedb-other', 'acedb-other-belvu', 'acedb-other-dotter', 'adapterremoval', 'adun-core', 'adun.app', 'adwaita-icon-theme', 'aegean', 'aevol', 'aglfn', 'alien-hunter', 'alter-sequence-alignment', 'altree', 'amap-align', 'ampliconnoise', 'andi', 'anfo', 'ant', 'ant-contrib', 'ant-optional', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'apbs', 'aragorn', 'arden', 'ariba', 'art-nextgen-simulation-tools', 'artemis', 'artfastqgenerator', 'aspell', 'aspell-en', 'astro-tasks', 'at-spi2-core', 'atac', 'augustus', 'augustus-data', 'autoconf', 'autodock', 'autodock-vina', 'autogrid', 'automake', 'autopoint', 'autotools-dev', 'axe-demultiplexer', 'ballview', 'bamtools', 'barrnap', 'bauble', 'bc', 'bcftools', 'beagle', 'beast-mcmc', 'beast2-mcmc', 'bedtools', 'beignet-opencl-icd:amd64', 'berkeley-express', 'binfmt-support', 'binutils', 'bio-eagle', 'bio-rainbow', 'biomaj', 'bioperl', 'bioperl-run', 'biosquid', 'blasr', 'blast2', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'boxshade', 'brig', 'bsdmainutils', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'ca-certificates', 'ca-certificates-java', 'cassiopee', 'cd-hit', 'cdbfasta', 'cdbs', 'cgview', 'chimeraslayer', 'circlator', 'circos', 'circos-tools', 'clearcut', 'clonalframe', 'clustalo', 'clustalw', 'clustalx', 'codonw', 'colord', 'colord-data', 'concavity', 'conservation-code', 'cpp', 'cpp-4.9', 'cpp-6', 'crac', 'critterding', 'cron', 'curl', 'cutadapt', 'cython', 'daligner', 'dascrubber', 'datamash', 'dawg', 'dazzdb', 'dbus', 'dbus-java-bin', 'dconf-gsettings-backend:amd64', 'dconf-service', 'debhelper', 'debichem-tasks', 'default-jre', 'default-jre-headless', 'default-mysql-client', 'dh-autoreconf', 'dh-python', 'dh-strip-nondeterminism', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dictionaries-common', 'dindel', 'discosnp', 'disulfinder', 'disulfinder-data', 'dmidecode', 'dnaclust', 'docutils-common', 'docutils-doc', 'dpkg-dev', 'dssp', 'dvipng', 'dwgsim', 'ea-utils', 'ecopcr', 'edtsurf', 'eigensoft', 'emacsen-common', 'embassy-domainatrix', 'embassy-domalign', 'embassy-domsearch', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'f2j', 'fakeroot', 'falcon', 'fastahack', 'fastaq', 'fastdnaml', 'fastjar', 'fastlink', 'fastml', 'fastqc', 'fastqtl', 'fasttree', 'fastx-toolkit', 'ffindex', 'figtree', 'file', 'filo', 'fitgcp', 'flexbar', 'fml-asm', 'fontconfig', 'fontconfig-config', 'fonts-cabin', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-comfortaa', 'fonts-croscore', 'fonts-crosextra-caladea', 'fonts-crosextra-carlito', 'fonts-dejavu', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid', 'fonts-droid-fallback', 'fonts-ebgaramond', 'fonts-ebgaramond-extra', 'fonts-font-awesome', 'fonts-freefont-otf', 'fonts-freefont-ttf', 'fonts-gfs-artemisia', 'fonts-gfs-complutum', 'fonts-gfs-didot', 'fonts-gfs-neohellenic', 'fonts-gfs-olga', 'fonts-gfs-solomos', 'fonts-inconsolata', 'fonts-junicode', 'fonts-lato', 'fonts-liberation', 'fonts-linuxlibertine', 'fonts-lmodern', 'fonts-lobster', 'fonts-lobstertwo', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-hinted', 'fonts-noto-mono', 'fonts-oflb-asana-math', 'fonts-roboto-hinted', 'fonts-sil-gentium', 'fonts-sil-gentium-basic', 'fonts-sil-gentiumplus', 'fonts-sil-gentiumplus-compact', 'fonts-stix', 'fonts-texgyre', 'fop', 'freecontact', 'freeglut3:amd64', 'fsa', 'fsm-lite', 'g++-', 'g++-4.9', 'g++-6', 'gamgi', 'garli', 'garlic', 'gasic', 'gawk', 'gbrowse', 'gcc', 'gcc-4.9', 'gcc-6', 'gdpc', 'genometools', 'genometools-common', 'gentle', 'gettext', 'gettext-base', 'gff2aplot', 'gff2ps', 'gfortran', 'gfortran-4.9', 'gfortran-6', 'ghemical', 'ghostscript', 'giira', 'glam2', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'glpk-utils', 'gnupg', 'gnupg-agent', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gnustep-back-common', 'gnustep-back0.25', 'gnustep-back0.25-cairo', 'gnustep-base-common', 'gnustep-base-runtime', 'gnustep-common', 'gnustep-dl2-postgresql-adaptor', 'gnustep-gui-common', 'gnustep-gui-runtime', 'graphlan', 'graphviz', 'grinder', 'groff-base', 'gromacs', 'gromacs-data', 'gsettings-desktop-schemas', 'gsfonts', 'gstreamer1.0-plugins-base:amd64', 'gtk-update-icon-cache', 'gubbins', 'guile-2.0-libs:amd64', 'gwama', 'harvest-tools', 'hdf5-tools', 'hhsuite', 'hhsuite-data', 'hicolor-icon-theme', 'hilive', 'hisat2', 'hmmer', 'hmmer2', 'hyphy-common', 'hyphy-mpi', 'hyphygui', 'icc-profiles-free', 'icedtea-netx-common', 'icu-devtools', 'idba', 'ifupdown', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'imagemagick-common', 'indelible', 'infernal', 'intltool-debian', 'ipig', 'iproute2', 'ipython', 'iqtree', 'isc-dhcp-client', 'isc-dhcp-common', 'iso-codes', 'isympy', 'isympy-common', 'iva', 'jaligner', 'jalview', 'jarwrapper', 'java-common', 'java-wrappers', 'javahelp2', 'javascript-common', 'jellyfish', 'jemboss', 'jmodeltest', 'jmol', 'jmol-applet', 'junit', 'junit4', 'kalign', 'khmer:amd64', 'khmer-common', 'kineticstools', 'kineticstools-data', 'king', 'king-probe', 'kissplice', 'kmc', 'kmer', 'kraken', 'krb5-locales', 'ksh', 'lambda-align', 'laptop-detect', 'last-align', 'leaff', 'lefse', 'libace-perl', 'libaec0:amd64', 'libai-fann-perl', 'libaio1:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libamd2:amd64', 'libamd2.3.1:amd64', 'libanfo0', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libao-common', 'libao4', 'libapache-dbi-perl', 'libapache-mime4j-java', 'libapache-pom-java', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libarchive-zip-perl', 'libarchive13:amd64', 'libargtable2-0', 'libarmadillo7', 'libarpack2', 'libarray-compare-perl', 'libarray-utils-perl', 'libart-2.0-2:amd64', 'libasan1:amd64', 'libasan3:amd64', 'libasm-java', 'libasound2:amd64', 'libasound2-data', 'libaspell15:amd64', 'libasprintf-dev:amd64', 'libasprintf0v5:amd64', 'libasync-interrupt-perl', 'libasyncns0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatlas3-base', 'libatm1:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libaudio2:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavalon-framework-java', 'libaxis-java', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libball1.4', 'libball1.4-data', 'libballview1.4', 'libbambamc0', 'libbamtools2.3.0', 'libbamtools2.4.0', 'libbareword-filehandles-perl', 'libbatik-java', 'libbcmail-java', 'libbcpkix-java', 'libbcprov-java', 'libbio-asn1-entrezgene-perl', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbiojava-java', 'libbiojava1.7-java', 'libbit-vector-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libblasr:amd64', 'libblosc1', 'libboost-atomic1.62.0:amd64', 'libboost-chrono1.55.0:amd64', 'libboost-chrono1.62.0:amd64', 'libboost-date-time1.55.0:amd64', 'libboost-date-time1.62.0:amd64', 'libboost-filesystem1.55.0:amd64', 'libboost-filesystem1.62.0:amd64', 'libboost-iostreams1.55.0:amd64', 'libboost-iostreams1.62.0:amd64', 'libboost-math1.55.0:amd64', 'libboost-math1.62.0:amd64', 'libboost-mpi1.55.0', 'libboost-mpi1.62.0', 'libboost-program-options1.55.0:amd64', 'libboost-program-options1.62.0:amd64', 'libboost-random1.55.0:amd64', 'libboost-random1.62.0:amd64', 'libboost-regex1.55.0:amd64', 'libboost-regex1.62.0:amd64', 'libboost-serialization1.55.0:amd64', 'libboost-serialization1.62.0:amd64', 'libboost-system1.55.0:amd64', 'libboost-system1.62.0:amd64', 'libboost-thread1.55.0:amd64', 'libboost-thread1.62.0:amd64', 'libboost-timer1.55.0:amd64', 'libboost-timer1.62.0:amd64', 'libbpp-core2v5:amd64', 'libbpp-phyl-omics1v5', 'libbpp-phyl9v5:amd64', 'libbpp-seq-omics1v5:amd64', 'libbpp-seq9v5:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbsf-java', 'libbytecode-java', 'libbytes-random-secure-perl', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaca0:amd64', 'libcache-cache-perl', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcanberra-gtk3-0:amd64', 'libcanberra-gtk3-module:amd64', 'libcanberra0:amd64', 'libcapnp-0.5.3', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcassie1', 'libcassie1v5', 'libcastor-core-java', 'libcastor-xml-java', 'libcbf0:amd64', 'libcc1-0:amd64', 'libcdparanoia0:amd64', 'libcdt5', 'libcfitsio2:amd64', 'libcfitsio5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libclass-method-modifiers-perl', 'libclass-tiny-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcloog-isl4:amd64', 'libcneartree5:amd64', 'libcofoja-java', 'libcolamd2:amd64', 'libcolamd2.8.0:amd64', 'libcolord2:amd64', 'libcolorhug2:amd64', 'libcolt-free-java', 'libcommon-sense-perl', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-configuration-java', 'libcommons-dbcp-java', 'libcommons-discovery-java', 'libcommons-httpclient-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-net-java', 'libcommons-net2-java', 'libcommons-parent-java', 'libcommons-pool-java', 'libconcurrent-java', 'libconfig-general-perl', 'libconfig-inifiles-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-changes-perl', 'libcpan-meta-perl', 'libcqrlib2:amd64', 'libcr0', 'libcroco3:amd64', 'libcrypt-random-seed-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcrypto++6', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3:amd64', 'libcurl3-gnutls:amd64', 'libcvector2:amd64', 'libdata-dumper-simple-perl', 'libdata-optlist-perl', 'libdata-perl-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdbus-java', 'libdconf1:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-overloadinfo-perl', 'libdevel-partialdump-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdirectfb-1.2-9:amd64', 'libdisorder0:amd64', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdns-export100', 'libdns-export162', 'libdom4j-java', 'libdouble-conversion1:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdsdp-5.8gf', 'libecpg6:amd64', 'libedit2:amd64', 'libegl1-mesa:amd64', 'libelf1:amd64', 'libelfg0:amd64', 'libelk0', 'libemail-date-format-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libepoxy0:amd64', 'liberfa1:amd64', 'liberror-perl', 'libev-perl', 'libeval-closure-perl', 'libevdev2:amd64', 'libexception-class-perl', 'libexif12:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libexporter-tiny-perl', 'libf2j-java', 'libfabric1', 'libfakeroot:amd64', 'libfann2:amd64', 'libfastahack0', 'libfastutil-java', 'libfcgi-perl', 'libffindex0', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfile-basedir-perl', 'libfile-chdir-perl', 'libfile-copy-link-perl', 'libfile-copy-recursive-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-homedir-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-slurper-perl', 'libfile-stripnondeterminism-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libflac8:amd64', 'libflite1:amd64', 'libfltk-images1.3:amd64', 'libfltk1.3:amd64', 'libfml0', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontbox-java', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfop-java', 'libfreecontact0', 'libfreecontact0v5:amd64', 'libfreehep-export-java', 'libfreehep-graphics2d-java', 'libfreehep-graphicsio-emf-java', 'libfreehep-graphicsio-java', 'libfreehep-graphicsio-pdf-java', 'libfreehep-graphicsio-ps-java', 'libfreehep-graphicsio-svg-java', 'libfreehep-graphicsio-swf-java', 'libfreehep-graphicsio-tests-java', 'libfreehep-io-java', 'libfreehep-swing-java', 'libfreehep-util-java', 'libfreehep-xml-java', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libftgl2:amd64', 'libfuse2:amd64', 'libg20', 'libgail-common:amd64', 'libgail18:amd64', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-4.9-dev:amd64', 'libgcc-6-dev:amd64', 'libgd-graph-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd-text-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgenome-1.3-0v5:amd64', 'libgenometools0', 'libgetopt-euclid-perl', 'libgetopt-java', 'libgetopt-long-descriptive-perl', 'libgetopt-simple-perl', 'libgettextpo-dev:amd64', 'libgettextpo0:amd64', 'libgflags2', 'libgflags2v5', 'libgfortran-4.9-dev:amd64', 'libgfortran-6-dev:amd64', 'libgfortran3:amd64', 'libghemical-data', 'libghemical5v5', 'libgif4:amd64', 'libgif7:amd64', 'libgkarrays1', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglade2-0:amd64', 'libglapi-mesa:amd64', 'libglew1.10:amd64', 'libglew2.0:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglpk-java', 'libglpk36:amd64', 'libglpk40:amd64', 'libglu1-mesa:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnuinet-java', 'libgnumail-java', 'libgnustep-base1.24', 'libgnustep-dl2-0d', 'libgnustep-gui0.24', 'libgnustep-gui0.25', 'libgnutls-deb0-28:amd64', 'libgo-perl', 'libgomp1:amd64', 'libgoogle-glog0', 'libgoogle-glog0v5', 'libgphoto2-6:amd64', 'libgphoto2-l10n', 'libgphoto2-port10:amd64', 'libgphoto2-port12:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgromacs2', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgsl-dev', 'libgsl0ldbl', 'libgsl2:amd64', 'libgssapi-krb5-2:amd64', 'libgstreamer-plugins-base1.0-0:amd64', 'libgstreamer1.0-0:amd64', 'libgtextutils0:amd64', 'libgtextutils0v5:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgtkglext1', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libguava-java', 'libgudev-1.0-0:amd64', 'libgusb2:amd64', 'libgvc6', 'libgvpr2', 'libgzstream0', 'libhamcrest-java', 'libharfbuzz-icu0:amd64', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhdf5-100:amd64', 'libhdf5-8:amd64', 'libhdf5-cpp-100:amd64', 'libheap-perl', 'libhmsbeagle-java', 'libhmsbeagle1', 'libhmsbeagle1v5', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhsqldb-java', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttpclient-java', 'libhttpcore-java', 'libhttpmime-java', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibatis-java', 'libibverbs1', 'libice-dev:amd64', 'libice6:amd64', 'libicu-dev', 'libicu52:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libieee1284-3:amd64', 'libijs-0.35:amd64', 'libilmbase12:amd64', 'libilmbase6:amd64', 'libimport-into-perl', 'libindirect-perl', 'libinput-bin', 'libinput10:amd64', 'libint1', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libirs-export91', 'libisc-export160', 'libisc-export95', 'libisccfg-export90', 'libisl10:amd64', 'libisl15:amd64', 'libisorelax-java', 'libitext-java', 'libitext1-java', 'libitext5-java', 'libitm1:amd64', 'libj2ssh-java', 'libjaba-client-java', 'libjam-java', 'libjargs-java', 'libjas-plotter-java', 'libjasper1:amd64', 'libjava-xmlbuilder-java', 'libjaxen-java', 'libjaxp1.3-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjcommon-java', 'libjdom1-java', 'libjebl2-java', 'libjellyfish-2.0-2', 'libjemalloc1', 'libjets3t-java', 'libjgoodies-common-java', 'libjgoodies-forms-java', 'libjlapack-java', 'libjline-java', 'libjmol-java', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-modernizr', 'libjs-mootools', 'libjs-prototype', 'libjs-scriptaculous', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjsch-java', 'libjson-c2:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjson-perl', 'libjson-xs-perl', 'libjsoncpp0', 'libjsoncpp1:amd64', 'libjsr305-java', 'libjswingreader-java', 'libjung-free-java', 'libjxr-tools', 'libjxr0:amd64', 'libjzlib-java', 'libk5crypto3:amd64', 'libkdf5-2', 'libkeyutils1:amd64', 'libkpathsea6:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libkyotocabinet16v5:amd64', 'liblapack-dev', 'liblapack3', 'liblapacke', 'liblcms2-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm3.5:amd64', 'libllvm3.9:amd64', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'liblog4cpp5', 'liblog4cpp5v5', 'liblog4j1.2-java', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-2:amd64', 'libmagickcore-6.q16-3:amd64', 'libmagickcore-6.q16-3-extra:amd64', 'libmagickwand-6.q16-2:amd64', 'libmagickwand-6.q16-3:amd64', 'libmail-java', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmaloc1', 'libmariadbclient18:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-random-isaac-perl', 'libmath-random-isaac-xs-perl', 'libmath-random-mt-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-tamuanova-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmatthew-debug-java', 'libmbedcrypto0:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedx509-0:amd64', 'libmems-1.6-1v5:amd64', 'libmiglayout-java', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminimap0', 'libmldbm-perl', 'libmng1:amd64', 'libmnl0:amd64', 'libmodule-build-perl', 'libmodule-implementation-perl', 'libmodule-load-conditional-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmoose-perl', 'libmoox-handlesvia-perl', 'libmopac7-1gf', 'libmotif-common', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpj-java', 'libmpx2:amd64', 'libmro-compat-perl', 'libmsv-java', 'libmtdev1:amd64', 'libmtj-java', 'libmultidimensional-perl', 'libmuscle-3.7-1', 'libmysql-java', 'libmysqlclient18:amd64', 'libnaga-java', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libnanoxml2-java', 'libnb-org-openide-util-java', 'libnb-org-openide-util-lookup-java', 'libncbi-vdb2', 'libncbi-wvdb2', 'libncbi6:amd64', 'libncl1', 'libncurses5-dev:amd64', 'libncursesw5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetlib-java', 'libnetpbm10', 'libnettle4:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnucleotidelikelihoodcore0', 'libnuma1:amd64', 'libnumber-compare-perl', 'libnumber-format-perl', 'libobjc4:amd64', 'libogg0:amd64', 'liboglappth2', 'libole-storage-lite-perl', 'libopenbabel4v5', 'libopenblas-base', 'libopenexr22:amd64', 'libopenexr6:amd64', 'libopenjp2-7:amd64', 'libopenjpeg5:amd64', 'libopenmpi1.6', 'libopenmpi2:amd64', 'libopus0:amd64', 'liborc-0.4-0:amd64', 'liboro-java', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-constants-perl', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpal-java', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpango1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpangox-1.0-0:amd64', 'libpangoxft-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparse-recdescent-perl', 'libparse-yapp-perl', 'libpath-tiny-perl', 'libpathplan4', 'libpbbam:amd64', 'libpbdata:amd64', 'libpbihdf:amd64', 'libpbseq', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libperformance0.5', 'libperl4-corelibs-perl', 'libperl5.24:amd64', 'libperlio-gzip-perl', 'libperlio-utf8-strict-perl', 'libpgtypes3:amd64', 'libpicard-java', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng12-dev:amd64', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpod-latex-perl', 'libpod-markdown-perl', 'libpod-readme-perl', 'libpolkit-agent-1-0:amd64', 'libpolkit-backend-1-0:amd64', 'libpolkit-gobject-1-0:amd64', 'libpoppler-qt4-4:amd64', 'libpoppler46:amd64', 'libpoppler64:amd64', 'libpopt0:amd64', 'libpostgresql-jdbc-java', 'libpostscript-perl', 'libpotrace0', 'libpq5:amd64', 'libprocessing-core-java', 'libprocps3:amd64', 'libprotobuf10:amd64', 'libprotobuf9:amd64', 'libproxy1:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libptexenc1:amd64', 'libpth20:amd64', 'libpthread-stubs0-dev:amd64', 'libpulse0:amd64', 'libpvm3:amd64', 'libpython-all-dev:amd64', 'libpython-dev:amd64', 'libpython-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-dev:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libqes0', 'libqt4-dbus:amd64', 'libqt4-declarative:amd64', 'libqt4-designer:amd64', 'libqt4-help:amd64', 'libqt4-network:amd64', 'libqt4-opengl:amd64', 'libqt4-script:amd64', 'libqt4-scripttools:amd64', 'libqt4-sql:amd64', 'libqt4-sql-mysql:amd64', 'libqt4-svg:amd64', 'libqt4-test:amd64', 'libqt4-xml:amd64', 'libqt4-xmlpatterns:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5svg5:amd64', 'libqt5widgets5:amd64', 'libqt5xml5:amd64', 'libqtassistantclient4:amd64', 'libqtcore4:amd64', 'libqtdbus4:amd64', 'libqtgui4:amd64', 'libqtwebkit4:amd64', 'libquadmath0:amd64', 'librdmacm1', 'librdp-taxonomy-tree-java', 'libreadline-dev:amd64', 'libreadline5:amd64', 'libreadonly-perl', 'libregexp-common-perl', 'libregexp-java', 'librelaxng-datatype-java', 'librelion-1.3-1:amd64', 'librelion-1.4-1:amd64', 'librest-0.7-0:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'librhino-java', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby2.1:amd64', 'libruby2.3:amd64', 'libsam-java', 'libsane:amd64', 'libsane-common', 'libsane-extras:amd64', 'libsane-extras-common', 'libsaxon-java', 'libsaxonb-java', 'libsaxonhe-java', 'libsc-data', 'libsc7v5', 'libscalar-list-utils-perl', 'libsctp1:amd64', 'libsdl1.2debian:amd64', 'libsdsl3:amd64', 'libsensors4:amd64', 'libservlet2.5-java', 'libservlet3.1-java', 'libset-intspan-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm-dev:amd64', 'libsm6:amd64', 'libsmithwaterman0', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsnp-sites1', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsprng2', 'libsqlclient1.7', 'libsqlite0', 'libsquizz', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libssw-java', 'libssw0:amd64', 'libstaden-read1', 'libstaden-read11:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstdc++-4.9-dev:amd64', 'libstdc++-6-dev:amd64', 'libsteptalk0', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-uplevel-perl', 'libsuitesparseconfig4:amd64', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsvm3', 'libswing-layout-java', 'libsynctex1:amd64', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtabixpp0:amd64', 'libtablelayout-java', 'libtamuanova-0.2', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.5:amd64', 'libtcl8.6:amd64', 'libtcmalloc-minimal4', 'libtdb1:amd64', 'libterm-readkey-perl', 'libterm-ui-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-pod-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtexlua52:amd64', 'libtexluajit2:amd64', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-glob-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtheora0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtinyxml2.6.2:amd64', 'libtinyxml2.6.2v5:amd64', 'libtk8.5:amd64', 'libtk8.6:amd64', 'libtmglib3', 'libtool', 'libtre5:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libubsan0:amd64', 'libunicode-map-perl', 'libunicode-utf8-perl', 'libunistring0:amd64', 'libunixsocket-java', 'libunwind8', 'liburi-perl', 'libusb-1.0-0:amd64', 'libutempter0:amd64', 'libv4l-0:amd64', 'libv4lconvert0:amd64', 'libvamsas-client-java', 'libvariable-magic-perl', 'libvcflib-tools', 'libvcflib1', 'libvecmath-java', 'libvibrant6b:amd64', 'libvisual-0.4-0:amd64', 'libvisual-0.4-plugins:amd64', 'libvm-ec2-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libvorbisfile3:amd64', 'libvpx1:amd64', 'libvte-common', 'libvte9', 'libwacom-bin', 'libwacom-common', 'libwacom2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwcs5:amd64', 'libwebp5:amd64', 'libwebp6:amd64', 'libwebpdemux1:amd64', 'libwebpdemux2:amd64', 'libwebpmux1:amd64', 'libwebpmux2:amd64', 'libwmf0.2-7:amd64', 'libwrap0:amd64', 'libwsdl4j-java', 'libwww-perl', 'libwww-robotrules-perl', 'libwxbase3.0-0:amd64', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-0:amd64', 'libwxgtk3.0-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-dev:amd64', 'libx11-doc', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxalan2-java', 'libxau-dev:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util0:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcb1-dev:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp-dev:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.1:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxfont1:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxm4:amd64', 'libxml-checker-perl', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlgraphics-commons-java', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxom-java', 'libxpm4:amd64', 'libxpp2-java', 'libxpp3-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt-dev:amd64', 'libxt6:amd64', 'libxtables10', 'libxtables12:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyaml-tiny-perl', 'libzeep3.0', 'libzeep3.0v5', 'libzeus-jscl-java', 'libzstd1', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lksctp-tools', 'lmodern', 'logol-bin', 'loki', 'ltrsift', 'lua-filesystem:amd64', 'lua-lpeg:amd64', 'lua-md5:amd64', 'lynx', 'lynx-common', 'lynx-cur', 'm4', 'macs', 'macsyfinder', 'maffilter', 'mafft', 'mailutils', 'mailutils-common', 'make', 'man-db', 'manpages-dev', 'mapdamage', 'mapsembler2', 'maq', 'maqview', 'mariadb-client-10.1', 'mariadb-client-core-10.1', 'mariadb-common', 'mash', 'massxpert', 'massxpert-data', 'mauve-aligner', 'mcl', 'med-bio', 'med-config', 'med-tasks', 'melting', 'menu', 'meryl', 'mesa-utils', 'metaphlan2', 'metaphlan2-data', 'metastudent', 'metastudent-data', 'metastudent-data-2', 'mhap', 'microbegps', 'microbiomeutil', 'microbiomeutil-data', 'mime-support', 'minia', 'miniasm', 'minimap', 'mipe', 'mira-assembler', 'mira-rfam-12s-rrna', 'mknfonts.tool', 'mlv-smile', 'mothur', 'mpi-default-bin', 'mpqc', 'mrbayes', 'mrs', 'mummer', 'murasaki', 'murasaki-common', 'muscle', 'mustang', 'mysql-client', 'mysql-common', 'nanopolish', 'nast-ier', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-entrez-direct', 'ncbi-epcr', 'ncbi-seg', 'ncbi-tools-bin', 'ncbi-tools-x11', 'ncl-tools', 'ncoils', 'neobio', 'netbase', 'netpbm', 'njplot', 'norsnet', 'norsp', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'openjdk-7-jre-headless:amd64', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openms-common', 'openssh-client', 'openssl', 'paraclu', 'parafly', 'parallel', 'parsinsert', 'parsnp', 'patch', 'pbalign', 'pbbamtools', 'pbbarcode', 'pbdagcon', 'pbgenomicconsensus', 'pbh5tools', 'pbhoney', 'pbjelly', 'pbsim', 'pbsuite', 'pdb2pqr', 'perl', 'perl-doc', 'perl-modules', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'perl-tk', 'perlprimer', 'perm', 'phipack', 'phybin', 'phylip', 'phyml', 'physamp', 'phyutility', 'picard-tools', 'piler', 'pinentry-curses', 'pirs', 'pirs-profiles', 'pkg-config', 'placnet', 'plasmidomics', 'plast', 'plink', 'plink1.9', 'plip', 'po-debconf', 'poa', 'policykit-1', 'poppler-data', 'populations', 'poretools', 'pp-popularity-contest', 'prank', 'predictnls', 'predictprotein', 'prerex', 'preview-latex-style', 'prime-phylo', 'primer3', 'proalign', 'probabel', 'probalign', 'probcons', 'proda', 'prodigal', 'profbval', 'profisis', 'profnet-bval', 'profnet-chop', 'profnet-con', 'profnet-isis', 'profnet-md', 'profnet-norsnet', 'profnet-prof', 'profnet-snapfun', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'progressivemauve', 'prosper', 'proteinortho', 'prottest', 'ps2eps', 'psmisc', 'publicsuffix', 'pvm', 'pycorrfit', 'pymol', 'pymol-data', 'pynast', 'pyqi', 'pyscanfcs', 'python', 'python-alabaster', 'python-all', 'python-all-dev', 'python-antlr', 'python-astropy', 'python-avro', 'python-babel', 'python-babel-localedata', 'python-backports-shutil-get-terminal-size', 'python-ball', 'python-ballview', 'python-biom-format', 'python-biopython', 'python-biopython-doc', 'python-bs4', 'python-cairo', 'python-cffi-backend', 'python-chardet', 'python-click', 'python-cogent', 'python-colorama', 'python-configobj', 'python-configparser', 'python-crypto', 'python-cryptography', 'python-cvxopt', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-dendropy', 'python-dev', 'python-docutils', 'python-egenix-mxdatetime', 'python-egenix-mxtools', 'python-enum34', 'python-funcsigs', 'python-functools32', 'python-future', 'python-gdata', 'python-glade2', 'python-gmpy', 'python-gobject-2', 'python-gtk2', 'python-h5py', 'python-html5lib', 'python-htseq', 'python-idna', 'python-imagesize', 'python-imaging', 'python-intervaltree', 'python-intervaltree-bio', 'python-ipaddress', 'python-ipython', 'python-ipython-genutils', 'python-iso8601', 'python-jdcal', 'python-jinja2', 'python-joblib', 'python-kineticstools', 'python-lmfit', 'python-lxml', 'python-mako', 'python-markupsafe', 'python-matplotlib', 'python-matplotlib-data', 'python-matplotlib-venn', 'python-minimal', 'python-mock', 'python-mpi4py', 'python-mpmath', 'python-msgpack', 'python-multipletau', 'python-mysqldb', 'python-networkx', 'python-nose', 'python-numexpr', 'python-numpy', 'python-openbabel', 'python-opengl', 'python-openpyxl', 'python-openssl', 'python-pandas', 'python-pandas-lib', 'python-pathlib2', 'python-patsy', 'python-pbalign', 'python-pbbanana', 'python-pbcommand', 'python-pbconsensuscore', 'python-pbcore', 'python-pbgenomicconsensus', 'python-pbh5tools', 'python-pbr', 'python-pbsuite-utils', 'python-pexpect', 'python-pickleshare', 'python-pil:amd64', 'python-pkg-resources', 'python-ply', 'python-pmw', 'python-prompt-toolkit', 'python-ptyprocess', 'python-py', 'python-pyasn1', 'python-pyfits', 'python-pyglet', 'python-pygments', 'python-pygraphviz', 'python-pyparsing', 'python-pyrex', 'python-pysam', 'python-pysqlite2', 'python-pytest', 'python-qcli', 'python-qt4', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-requests', 'python-roman', 'python-rpy2', 'python-ruffus', 'python-scipy', 'python-seaborn', 'python-setuptools', 'python-simplegeneric', 'python-simplejson', 'python-singledispatch', 'python-sip', 'python-six', 'python-sklearn', 'python-sklearn-lib', 'python-sortedcontainers', 'python-sphinx', 'python-sqlalchemy', 'python-sqlalchemy-ext', 'python-statsmodels', 'python-statsmodels-lib', 'python-subprocess32', 'python-support', 'python-sympy', 'python-sympy-doc', 'python-tables', 'python-tables-data', 'python-tables-lib', 'python-tk', 'python-traitlets', 'python-tz', 'python-urllib3', 'python-wcwidth', 'python-webencodings', 'python-wxgtk3.0', 'python-wxversion', 'python-xlrd', 'python-xlwt', 'python-yaml', 'python2.7', 'python2.7-dev', 'python2.7-minimal', 'python3', 'python3-biopython', 'python3-bs4', 'python3-bz2file', 'python3-chardet', 'python3-cutadapt', 'python3-decorator', 'python3-dendropy', 'python3-html5lib', 'python3-jdcal', 'python3-lxml', 'python3-minimal', 'python3-networkx', 'python3-nose', 'python3-numpy', 'python3-openpyxl', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-py', 'python3-pymummer', 'python3-pysam', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-screed', 'python3-six', 'python3-webencodings', 'python3-xopen', 'python3-yaml', 'python3.4', 'python3.4-minimal', 'python3.5', 'python3.5-minimal', 'qdbus', 'qiime', 'qiime-data', 'qt-at-spi:amd64', 'qt5-gtk-platformtheme:amd64', 'qtchooser', 'qtcore4-l10n', 'qtltools', 'qttranslations5-l10n', 'r-base', 'r-base-core', 'r-base-dev', 'r-base-html', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biomformat', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-cummerbund', 'r-bioc-deseq2', 'r-bioc-dnacopy', 'r-bioc-ebseq', 'r-bioc-edger', 'r-bioc-ensembldb', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-hilbertvis', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-limma', 'r-bioc-mergeomics', 'r-bioc-metagenomeseq', 'r-bioc-multtest', 'r-bioc-phyloseq', 'r-bioc-qvalue', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-acepack', 'r-cran-ade4', 'r-cran-adegenet', 'r-cran-adegraphics', 'r-cran-adephylo', 'r-cran-ape', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bbmle', 'r-cran-bio3d', 'r-cran-bitops', 'r-cran-blockmodeling', 'r-cran-bold', 'r-cran-boot', 'r-cran-brew', 'r-cran-catools', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cluster', 'r-cran-coda', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-combinat', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-deldir', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-distory', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-ellipse', 'r-cran-evaluate', 'r-cran-fail', 'r-cran-fastcluster', 'r-cran-fastmatch', 'r-cran-fields', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-g.data', 'r-cran-gam', 'r-cran-gdata', 'r-cran-genabel', 'r-cran-genabel.data', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glmnet', 'r-cran-globals', 'r-cran-gmodels', 'r-cran-googlevis', 'r-cran-gplots', 'r-cran-gridbase', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-igraph', 'r-cran-inline', 'r-cran-irlba', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-learnbayes', 'r-cran-listenv', 'r-cran-littler', 'r-cran-luminescence', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-minpack.lm', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nmf', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-optparse', 'r-cran-permute', 'r-cran-phangorn', 'r-cran-phylobase', 'r-cran-pkgkitten', 'r-cran-pkgmaker', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-proto', 'r-cran-pscbs', 'r-cran-qtl', 'r-cran-quadprog', 'r-cran-r.cache', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-randomforest', 'r-cran-raster', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppgsl', 'r-cran-rcurl', 'r-cran-readxl', 'r-cran-registry', 'r-cran-rentrez', 'r-cran-reshape', 'r-cran-reshape2', 'r-cran-rgl', 'r-cran-ritis', 'r-cran-rlumshiny', 'r-cran-rncl', 'r-cran-rnexml', 'r-cran-rngtools', 'r-cran-rocr', 'r-cran-rotl', 'r-cran-rpart', 'r-cran-rredlist', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-scatterd3', 'r-cran-segmented', 'r-cran-sendmailr', 'r-cran-seqinr', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinybs', 'r-cran-snow', 'r-cran-solrium', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spam', 'r-cran-spatial', 'r-cran-spdep', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-taxize', 'r-cran-tcltk2', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-treescape', 'r-cran-uuid', 'r-cran-vegan', 'r-cran-viridis', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'r-doc-html', 'r-mathlib', 'r-other-mott-happy.hbrem', 'r-recommended', 'rake', 'rambo-k', 'rapmap', 'rasmol', 'raster3d', 'rate4site', 'raxml', 'ray', 'rdp-alignment', 'rdp-classifier', 'rdp-classifier-doc', 'rdp-readseq', 'readseq', 'reapr', 'relion-bin', 'rename', 'repeatmasker-recon', 'reprof', 'rhino', 'rna-star', 'rnahybrid', 'roary', 'rsem', 'rsync', 'rtax', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby2.1', 'ruby2.3', 'rubygems-integration', 'saint', 'salmon', 'samtools', 'sane-utils', 'science-config', 'science-tasks', 'scrm', 'scythe', 'seaview', 'seer', 'seqan-apps', 'seqprep', 'seqtk', 'sga', 'sgml-base', 'shared-mime-info', 'sibsim4', 'sickle', 'sigma-align', 'sim4', 'sim4db', 'smalt', 'smithwaterman', 'smrtanalysis', 'snap', 'snap-aligner', 'sniffles', 'snp-sites', 'snpomatic', 'soapdenovo', 'soapdenovo2', 'sortmerna', 'spaced', 'spades', 'sphinx-common', 'sphinx-doc', 'sphinx-rtd-theme-common', 'sprai', 'spread-phy', 'sqlite3', 'squizz', 'sra-toolkit', 'sra-toolkit-libs0', 'srst2', 'ssake', 'ssl-cert', 'sspace', 'ssw-align', 'stacks', 'staden', 'staden-common', 'staden-io-lib-utils', 'steptalk', 'subread', 'suitename', 'sumaclust', 'sumatra', 'sumtrees', 'surankco', 'swarm', 'swi-prolog', 'swi-prolog-nox', 'swi-prolog-x', 'sysstat', 't-coffee', 't1utils', 'tabix', 'tantan', 'tasksel', 'tasksel-data', 'tcl', 'tcl8.6', 'tcllib', 'tcpd', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-binaries', 'texlive-extra-utils', 'texlive-font-utils', 'texlive-fonts-extra', 'texlive-fonts-extra-doc', 'texlive-fonts-recommended', 'texlive-fonts-recommended-doc', 'texlive-generic-extra', 'texlive-generic-recommended', 'texlive-latex-base', 'texlive-latex-base-doc', 'texlive-latex-extra', 'texlive-latex-extra-doc', 'texlive-latex-recommended', 'texlive-latex-recommended-doc', 'texlive-math-extra', 'texlive-pictures', 'texlive-pictures-doc', 'texlive-pstricks', 'texlive-pstricks-doc', 'texlive-science', 'texlive-science-doc', 'theseus', 'tigr-glimmer', 'time', 'tipa', 'tk', 'tk-table:amd64', 'tk8.6', 'tk8.6-blt2.5', 'tklib', 'tm-align', 'tophat', 'topp', 'toppred', 'transdecoder', 'transrate-tools', 'transtermhp', 'tree-puzzle', 'tree-puzzle-doc', 'treeview', 'treeviewx', 'trimmomatic', 'trinityrnaseq', 'trinityrnaseq-examples', 'ttf-adf-accanthis', 'ttf-adf-gillius', 'ttf-adf-universalis', 'ttf-bitstream-vera', 'ttf-dejavu', 'ttf-dejavu-core', 'ttf-dejavu-extra', 'ttf-liberation', 'uc-echo', 'ucf', 'unzip', 'update-inetd', 'varna', 'vcftools', 'velvet', 'velvetoptimiser', 'vprerex', 'vsearch', 'wigeon', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'x11proto-core-dev', 'x11proto-input-dev', 'x11proto-kb-dev', 'xauth', 'xbitmaps', 'xdg-user-dirs', 'xdg-utils', 'xfonts-100dpi', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xorg-sgml-doctools', 'xsltproc', 'xterm', 'xtrans-dev', 'xz-utils', 'zalign', 'zip', 'zlib1g-dev:amd64', 'science-biology'] 40m37.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libtinyxml2.6.2' is not installed, so not removed Package 'libzeep3.0' is not installed, so not removed Package 'libgtextutils0' is not installed, so not removed Package 'python3.4-minimal' is not installed, so not removed Package 'jalview' is not installed, so not removed Package 'liblog4cpp5' is not installed, so not removed Package 'topp' is not installed, so not removed Package 'libpcrecpp0' is not installed, so not removed Package 'libboost-mpi1.55.0' is not installed, so not removed Package 'libgoogle-glog0' is not installed, so not removed Package 'libcassie1' is not installed, so not removed Package 'perl-modules' is not installed, so not removed Package 'libopenmpi1.6' is not installed, so not removed Package 'libmagickwand-6.q16-2' is not installed, so not removed Package 'fonts-droid' is not installed, so not removed Package 'libmagickcore-6.q16-2' is not installed, so not removed Package 'libgsl0ldbl' is not installed, so not removed Package 'libwxgtk3.0-0' is not installed, so not removed Package 'openjdk-7-jre-headless' is not installed, so not removed Package 'libhmsbeagle1' is not installed, so not removed Package 'libpython3.4-minimal' is not installed, so not removed Package 'libproxy1' is not installed, so not removed Package 'python3.4' is not installed, so not removed Package 'libboost-date-time1.55.0' is not installed, so not removed Package 'librelion-1.3-1' is not installed, so not removed Package 'libgflags2' is not installed, so not removed Package 'libgnustep-gui0.24' is not installed, so not removed Package 'libfreecontact0' is not installed, so not removed Package 'libwxbase3.0-0' is not installed, so not removed Package 'texlive-math-extra' is not installed, so not removed The following packages were automatically installed and are no longer required: dirmngr gnupg-l10n libassuan0 libffi6 libgmp10 libgnutls30 libhogweed4 libksba8 libldap-2.4-2 libldap-common libnettle6 libnpth0 libp11-kit0 libreadline7 libsasl2-2 libsasl2-modules libsasl2-modules-db libsqlite3-0 libssl1.1 libtasn1-6 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: abacas abyss acedb-other acedb-other-belvu acedb-other-dotter adapterremoval adun-core adun.app adwaita-icon-theme aegean aevol aglfn alien-hunter alter-sequence-alignment altree amap-align ampliconnoise andi anfo ant ant-contrib ant-optional apache2 apache2-bin apache2-data apache2-utils apbs aragorn arden ariba art-nextgen-simulation-tools artemis artfastqgenerator aspell aspell-en astro-tasks at-spi2-core atac augustus augustus-data autoconf autodock autodock-vina autogrid automake autopoint autotools-dev axe-demultiplexer ballview bamtools barrnap bauble bc bcftools beagle beast-mcmc beast2-mcmc bedtools beignet-opencl-icd berkeley-express binfmt-support binutils bio-eagle bio-rainbow biomaj bioperl bioperl-run biosquid blasr blast2 blends-common blt bowtie bowtie2 boxshade brig bsdmainutils build-essential bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cassiopee cd-hit cdbfasta cdbs cgview chimeraslayer circlator circos circos-tools clearcut clonalframe clustalo clustalw clustalx codonw colord colord-data concavity conservation-code cpp cpp-4.9 cpp-6 crac critterding cron curl cutadapt cython daligner dascrubber datamash dawg dazzdb dbus dbus-java-bin dconf-gsettings-backend dconf-service debhelper debichem-tasks default-jre default-jre-headless default-mysql-client dh-autoreconf dh-python dh-strip-nondeterminism dialign dialign-tx dialign-tx-data dictionaries-common dindel discosnp disulfinder disulfinder-data dmidecode dnaclust docutils-common docutils-doc dpkg-dev dssp dvipng dwgsim ea-utils ecopcr edtsurf eigensoft emacsen-common embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate f2j fakeroot falcon fastahack fastaq fastdnaml fastjar fastlink fastml fastqc fastqtl fasttree fastx-toolkit ffindex figtree file filo fitgcp flexbar fml-asm fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-mathjax fonts-noto-hinted fonts-noto-mono fonts-oflb-asana-math fonts-roboto-hinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre fop freecontact freeglut3 fsa fsm-lite g++ g++-4.9 g++-6 gamgi garli garlic gasic gawk gbrowse gcc gcc-4.9 gcc-6 gdpc genometools genometools-common gentle gettext gettext-base gff2aplot gff2ps gfortran gfortran-4.9 gfortran-6 ghemical ghostscript giira glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnupg gnupg-agent gnuplot gnuplot-data gnuplot-qt gnustep-back-common gnustep-back0.25 gnustep-back0.25-cairo gnustep-base-common gnustep-base-runtime gnustep-common gnustep-dl2-postgresql-adaptor gnustep-gui-common gnustep-gui-runtime graphlan graphviz grinder groff-base gromacs gromacs-data gsettings-desktop-schemas gsfonts gstreamer1.0-plugins-base gtk-update-icon-cache gubbins guile-2.0-libs gwama harvest-tools hdf5-tools hhsuite hhsuite-data hicolor-icon-theme hilive hisat2 hmmer hmmer2 hyphy-common hyphy-mpi hyphygui icc-profiles-free icedtea-netx-common icu-devtools idba ifupdown imagemagick imagemagick-6-common imagemagick-6.q16 imagemagick-common indelible infernal intltool-debian ipig iproute2 ipython iqtree isc-dhcp-client isc-dhcp-common iso-codes isympy isympy-common iva jaligner jarwrapper java-common java-wrappers javahelp2 javascript-common jellyfish jemboss jmodeltest jmol jmol-applet junit junit4 kalign khmer khmer-common kineticstools kineticstools-data king king-probe kissplice kmc kmer kraken krb5-locales ksh lambda-align laptop-detect last-align leaff lefse libace-perl libaec0 libai-fann-perl libaio1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libamd2 libamd2.3.1 libanfo0 libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libao-common libao4 libapache-dbi-perl libapache-mime4j-java libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libarchive-zip-perl libarchive13 libargtable2-0 libarmadillo7 libarpack2 libarray-compare-perl libarray-utils-perl libart-2.0-2 libasan1 libasan3 libasm-java libasound2 libasound2-data libaspell15 libasprintf-dev libasprintf0v5 libasync-interrupt-perl libasyncns0 libatinject-jsr330-api-java libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatm1 libatomic1 libatspi2.0-0 libaudio2 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavalon-framework-java libaxis-java libb-hooks-endofscope-perl libb-hooks-op-check-perl libball1.4 libball1.4-data libballview1.4 libbambamc0 libbamtools2.3.0 libbamtools2.4.0 libbareword-filehandles-perl libbatik-java libbcmail-java libbcpkix-java libbcprov-java libbio-asn1-entrezgene-perl libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libblas-dev libblas3 libblasr libblosc1 libboost-atomic1.62.0 libboost-chrono1.55.0 libboost-chrono1.62.0 libboost-date-time1.62.0 libboost-filesystem1.55.0 libboost-filesystem1.62.0 libboost-iostreams1.55.0 libboost-iostreams1.62.0 libboost-math1.55.0 libboost-math1.62.0 libboost-mpi1.62.0 libboost-program-options1.55.0 libboost-program-options1.62.0 libboost-random1.55.0 libboost-random1.62.0 libboost-regex1.55.0 libboost-regex1.62.0 libboost-serialization1.55.0 libboost-serialization1.62.0 libboost-system1.55.0 libboost-system1.62.0 libboost-thread1.55.0 libboost-thread1.62.0 libboost-timer1.55.0 libboost-timer1.62.0 libbpp-core2v5 libbpp-phyl-omics1v5 libbpp-phyl9v5 libbpp-seq-omics1v5 libbpp-seq9v5 libbsd-resource-perl libbsd0 libbsf-java libbytecode-java libbytes-random-secure-perl libbz2-dev libc-dev-bin libc6-dev libcaca0 libcache-cache-perl libcairo-gobject2 libcairo2 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcapnp-0.5.3 libcapture-tiny-perl libcarp-always-perl libcarp-clan-perl libcassie1v5 libcastor-core-java libcastor-xml-java libcbf0 libcc1-0 libcdparanoia0 libcdt5 libcfitsio2 libcfitsio5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-perl libcloog-isl4 libcneartree5 libcofoja-java libcolamd2 libcolamd2.8.0 libcolord2 libcolorhug2 libcolt-free-java libcommon-sense-perl libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-configuration-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-net-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconcurrent-java libconfig-general-perl libconfig-inifiles-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-changes-perl libcpan-meta-perl libcqrlib2 libcr0 libcroco3 libcrypt-random-seed-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcrypto++6 libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libcvector2 libdata-dumper-simple-perl libdata-optlist-perl libdata-perl-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdbus-java libdconf1 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-overloadinfo-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdirectfb-1.2-9 libdisorder0 libdist-checkconflicts-perl libdivsufsort3 libdjvulibre-text libdjvulibre21 libdns-export100 libdns-export162 libdom4j-java libdouble-conversion1 libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdsdp-5.8gf libecpg6 libedit2 libegl1-mesa libelf1 libelfg0 libelk0 libemail-date-format-perl libencode-locale-perl libenv-path-perl libepoxy0 liberfa1 liberror-perl libev-perl libeval-closure-perl libevdev2 libexception-class-perl libexif12 libexpat1 libexpat1-dev libexporter-tiny-perl libf2j-java libfabric1 libfakeroot libfann2 libfastahack0 libfastutil-java libfcgi-perl libffindex0 libfftw3-double3 libfftw3-single3 libfile-basedir-perl libfile-chdir-perl libfile-copy-link-perl libfile-copy-recursive-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-find-rule-perl libfile-grep-perl libfile-homedir-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-slurper-perl libfile-stripnondeterminism-perl libfile-which-perl libfindbin-libs-perl libflac8 libflite1 libfltk-images1.3 libfltk1.3 libfml0 libfont-afm-perl libfont-ttf-perl libfontbox-java libfontconfig1 libfontenc1 libfop-java libfreecontact0v5 libfreehep-export-java libfreehep-graphics2d-java libfreehep-graphicsio-emf-java libfreehep-graphicsio-java libfreehep-graphicsio-pdf-java libfreehep-graphicsio-ps-java libfreehep-graphicsio-svg-java libfreehep-graphicsio-swf-java libfreehep-graphicsio-tests-java libfreehep-io-java libfreehep-swing-java libfreehep-util-java libfreehep-xml-java libfreetype6 libfreezethaw-perl libfribidi0 libftgl2 libfuse2 libg20 libgail-common libgail18 libgbm1 libgc1c2 libgcc-4.9-dev libgcc-6-dev libgd-graph-perl libgd-perl libgd-svg-perl libgd-text-perl libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgenome-1.3-0v5 libgenometools0 libgetopt-euclid-perl libgetopt-java libgetopt-long-descriptive-perl libgetopt-simple-perl libgettextpo-dev libgettextpo0 libgflags2v5 libgfortran-4.9-dev libgfortran-6-dev libgfortran3 libghemical-data libghemical5v5 libgif4 libgif7 libgkarrays1 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglew1.10 libglew2.0 libglib2.0-0 libglib2.0-data libglpk-java libglpk36 libglpk40 libglu1-mesa libgmp-dev libgmpxx4ldbl libgnuinet-java libgnumail-java libgnustep-base1.24 libgnustep-dl2-0d libgnustep-gui0.25 libgnutls-deb0-28 libgo-perl libgomp1 libgoogle-glog0v5 libgphoto2-6 libgphoto2-l10n libgphoto2-port10 libgphoto2-port12 libgraph-perl libgraph-readwrite-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgromacs2 libgs9 libgs9-common libgsasl7 libgsl-dev libgsl2 libgssapi-krb5-2 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgtextutils0v5 libgtk-3-0 libgtk-3-bin libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgtkglext1 libgts-0.7-5 libgts-bin libguard-perl libguava-java libgudev-1.0-0 libgusb2 libgvc6 libgvpr2 libgzstream0 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libhat-trie0 libhdf5-100 libhdf5-8 libhdf5-cpp-100 libheap-perl libhmsbeagle-java libhmsbeagle1v5 libhogweed2 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhtsjdk-java libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttpclient-java libhttpcore-java libhttpmime-java libhwloc-plugins libhwloc5 libibatis-java libibverbs1 libice-dev libice6 libicu-dev libicu52 libicu57 libidn2-0 libieee1284-3 libijs-0.35 libilmbase12 libilmbase6 libimport-into-perl libindirect-perl libinput-bin libinput10 libint1 libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-shareable-perl libipc-sharelite-perl libipc-system-simple-perl libirs-export91 libisc-export160 libisc-export95 libisccfg-export90 libisl10 libisl15 libisorelax-java libitext-java libitext1-java libitext5-java libitm1 libj2ssh-java libjaba-client-java libjam-java libjargs-java libjas-plotter-java libjasper1 libjava-xmlbuilder-java libjaxen-java libjaxp1.3-java libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjcommon-java libjdom1-java libjebl2-java libjellyfish-2.0-2 libjemalloc1 libjets3t-java libjgoodies-common-java libjgoodies-forms-java libjlapack-java libjline-java libjmol-java libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-modernizr libjs-mootools libjs-prototype libjs-scriptaculous libjs-sphinxdoc libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker libjs-underscore libjsch-java libjson-c2 libjson-glib-1.0-0 libjson-glib-1.0-common libjson-perl libjson-xs-perl libjsoncpp0 libjsoncpp1 libjsr305-java libjswingreader-java libjung-free-java libjxr-tools libjxr0 libjzlib-java libk5crypto3 libkdf5-2 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 libkyotocabinet16v5 liblapack-dev liblapack3 liblapacke liblcms2-2 liblexical-sealrequirehints-perl liblist-allutils-perl liblist-moreutils-perl liblist-someutils-perl liblist-utilsby-perl libllvm3.5 libllvm3.9 liblog-dispatch-perl liblog-log4perl-perl liblog-message-perl liblog-message-simple-perl liblog4cpp5v5 liblog4j1.2-java liblqr-1-0 liblsan0 libltdl-dev libltdl7 liblua5.1-0 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra libmagickwand-6.q16-3 libmail-java libmail-sendmail-perl libmailtools-perl libmailutils5 libmaloc1 libmariadbclient18 libmath-bezier-perl libmath-derivative-perl libmath-random-isaac-perl libmath-random-isaac-xs-perl libmath-random-mt-perl libmath-round-perl libmath-spline-perl libmath-tamuanova-perl libmath-vec-perl libmath-vecstat-perl libmatthew-debug-java libmbedcrypto0 libmbedtls-dev libmbedtls10 libmbedx509-0 libmems-1.6-1v5 libmiglayout-java libmime-lite-perl libmime-tools-perl libmime-types-perl libminimap0 libmldbm-perl libmng1 libmnl0 libmodule-build-perl libmodule-implementation-perl libmodule-load-conditional-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmoose-perl libmoox-handlesvia-perl libmopac7-1gf libmotif-common libmpc3 libmpdec2 libmpfr4 libmpj-java libmpx2 libmro-compat-perl libmsv-java libmtdev1 libmtj-java libmultidimensional-perl libmuscle-3.7-1 libmysql-java libmysqlclient18 libnaga-java libnamespace-autoclean-perl libnamespace-clean-perl libnanoxml2-java libnb-org-openide-util-java libnb-org-openide-util-lookup-java libncbi-vdb2 libncbi-wvdb2 libncbi6 libncl1 libncurses5-dev libncursesw5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetlib-java libnetpbm10 libnettle4 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk1 libnl-3-200 libnl-route-3-200 libnlopt0 libnotify4 libnspr4 libnss3 libntlm0 libnucleotidelikelihoodcore0 libnuma1 libnumber-compare-perl libnumber-format-perl libobjc4 libogg0 liboglappth2 libole-storage-lite-perl libopenbabel4v5 libopenblas-base libopenexr22 libopenexr6 libopenjp2-7 libopenjpeg5 libopenmpi2 libopus0 liborc-0.4-0 liboro-java libossp-uuid-perl libossp-uuid16 libpackage-constants-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpal-java libpam-systemd libpango-1.0-0 libpango1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libparse-yapp-perl libpath-tiny-perl libpathplan4 libpbbam libpbdata libpbihdf libpbseq libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libperformance0.5 libperl4-corelibs-perl libperl5.24 libperlio-gzip-perl libperlio-utf8-strict-perl libpgtypes3 libpicard-java libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpng16-16 libpod-coverage-perl libpod-latex-perl libpod-markdown-perl libpod-readme-perl libpolkit-agent-1-0 libpolkit-backend-1-0 libpolkit-gobject-1-0 libpoppler-qt4-4 libpoppler46 libpoppler64 libpopt0 libpostgresql-jdbc-java libpostscript-perl libpotrace0 libpq5 libprocessing-core-java libprocps3 libprotobuf10 libprotobuf9 libproxy1v5 libpsl5 libpsm-infinipath1 libptexenc1 libpth20 libpthread-stubs0-dev libpulse0 libpvm3 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libqes0 libqt4-dbus libqt4-declarative libqt4-designer libqt4-help libqt4-network libqt4-opengl libqt4-script libqt4-scripttools libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 libqt5xml5 libqtassistantclient4 libqtcore4 libqtdbus4 libqtgui4 libqtwebkit4 libquadmath0 librdmacm1 librdp-taxonomy-tree-java libreadline-dev libreadline5 libreadonly-perl libregexp-common-perl libregexp-java librelaxng-datatype-java librelion-1.4-1 librest-0.7-0 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl librhino-java librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libruby2.1 libruby2.3 libsam-java libsane libsane-common libsane-extras libsane-extras-common libsaxon-java libsaxonb-java libsaxonhe-java libsc-data libsc7v5 libscalar-list-utils-perl libsctp1 libsdl1.2debian libsdsl3 libsensors4 libservlet2.5-java libservlet3.1-java libset-intspan-perl libset-scalar-perl libsigsegv2 libsm-dev libsm6 libsmithwaterman0 libsnappy-java libsnappy-jni libsnappy1v5 libsndfile1 libsnp-sites1 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsprng2 libsqlclient1.7 libsqlite0 libsquizz libssh2-1 libssl1.0.0 libssl1.0.2 libssw-java libssw0 libstaden-read1 libstaden-read11 libstatistics-basic-perl libstatistics-descriptive-perl libstdc++-4.9-dev libstdc++-6-dev libsteptalk0 libstrictures-perl libstring-approx-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-uplevel-perl libsuitesparseconfig4 libsuperlu5 libsvg-graph-perl libsvg-perl libsvm3 libswing-layout-java libsynctex1 libsys-hostname-long-perl libsz2 libtabixpp0 libtablelayout-java libtamuanova-0.2 libtask-weaken-perl libtbb2 libtcl8.5 libtcl8.6 libtcmalloc-minimal4 libtdb1 libterm-readkey-perl libterm-ui-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-pod-perl libtest-simple-perl libtest-warn-perl libtexlua52 libtexluajit2 libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-format-perl libtext-glob-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtheora0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtinyxml2.6.2v5 libtk8.5 libtk8.6 libtmglib3 libtool libtre5 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libubsan0 libunicode-map-perl libunicode-utf8-perl libunistring0 libunixsocket-java libunwind8 liburi-perl libusb-1.0-0 libutempter0 libv4l-0 libv4lconvert0 libvamsas-client-java libvariable-magic-perl libvcflib-tools libvcflib1 libvecmath-java libvibrant6b libvisual-0.4-0 libvisual-0.4-plugins libvm-ec2-perl libvorbis0a libvorbisenc2 libvorbisfile3 libvpx1 libvte-common libvte9 libwacom-bin libwacom-common libwacom2 libwayland-client0 libwayland-cursor0 libwayland-egl1-mesa libwayland-server0 libwcs5 libwebp5 libwebp6 libwebpdemux1 libwebpdemux2 libwebpmux1 libwebpmux2 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase3.0-0v5 libwxgtk3.0-0v5 libx11-6 libx11-data libx11-dev libx11-doc libx11-protocol-perl libx11-xcb1 libxalan2-java libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util0 libxcb-xfixes0 libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxfont1 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxm4 libxml-checker-perl libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlgraphics-commons-java libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt-dev libxt6 libxtables10 libxtables12 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libxz-java libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzeep3.0v5 libzeus-jscl-java libzstd1 libzzip-0-13 linux-libc-dev littler lksctp-tools lmodern logol-bin loki ltrsift lua-filesystem lua-lpeg lua-md5 lynx lynx-common lynx-cur m4 macs macsyfinder maffilter mafft mailutils mailutils-common make man-db manpages-dev mapdamage mapsembler2 maq maqview mariadb-client-10.1 mariadb-client-core-10.1 mariadb-common mash massxpert massxpert-data mauve-aligner mcl med-bio med-config med-tasks melting menu meryl mesa-utils metaphlan2 metaphlan2-data metastudent metastudent-data metastudent-data-2 mhap microbegps microbiomeutil microbiomeutil-data mime-support minia miniasm minimap mipe mira-assembler mira-rfam-12s-rrna mknfonts.tool mlv-smile mothur mpi-default-bin mpqc mrbayes mrs mummer murasaki murasaki-common muscle mustang mysql-client mysql-common nanopolish nast-ier ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-entrez-direct ncbi-epcr ncbi-seg ncbi-tools-bin ncbi-tools-x11 ncl-tools ncoils neobio netbase netpbm njplot norsnet norsp notification-daemon ocl-icd-libopencl1 openjdk-8-jre openjdk-8-jre-headless openmpi-bin openmpi-common openms-common openssh-client openssl paraclu parafly parallel parsinsert parsnp patch pbalign pbbamtools pbbarcode pbdagcon pbgenomicconsensus pbh5tools pbhoney pbjelly pbsim pbsuite pdb2pqr perl perl-doc perl-modules-5.24 perl-openssl-defaults perl-tk perlprimer perm phipack phybin phylip phyml physamp phyutility picard-tools piler pinentry-curses pirs pirs-profiles pkg-config placnet plasmidomics plast plink plink1.9 plip po-debconf poa policykit-1 poppler-data populations poretools pp-popularity-contest prank predictnls predictprotein prerex preview-latex-style prime-phylo primer3 proalign probabel probalign probcons proda prodigal profbval profisis profnet-bval profnet-chop profnet-con profnet-isis profnet-md profnet-norsnet profnet-prof profnet-snapfun profphd profphd-net profphd-utils proftmb progressivemauve prosper proteinortho prottest ps2eps psmisc publicsuffix pvm pycorrfit pymol pymol-data pynast pyqi pyscanfcs python python-alabaster python-all python-all-dev python-antlr python-astropy python-avro python-babel python-babel-localedata python-backports-shutil-get-terminal-size python-ball python-ballview python-biom-format python-biopython python-biopython-doc python-bs4 python-cairo python-cffi-backend python-chardet python-click python-cogent python-colorama python-configobj python-configparser python-crypto python-cryptography python-cvxopt python-cycler python-dateutil python-decorator python-dendropy python-dev python-docutils python-egenix-mxdatetime python-egenix-mxtools python-enum34 python-funcsigs python-functools32 python-future python-gdata python-glade2 python-gmpy python-gobject-2 python-gtk2 python-h5py python-html5lib python-htseq python-idna python-imagesize python-imaging python-intervaltree python-intervaltree-bio python-ipaddress python-ipython python-ipython-genutils python-iso8601 python-jdcal python-jinja2 python-joblib python-kineticstools python-lmfit python-lxml python-mako python-markupsafe python-matplotlib python-matplotlib-data python-matplotlib-venn python-minimal python-mock python-mpi4py python-mpmath python-msgpack python-multipletau python-mysqldb python-networkx python-nose python-numexpr python-numpy python-openbabel python-opengl python-openpyxl python-openssl python-pandas python-pandas-lib python-pathlib2 python-patsy python-pbalign python-pbbanana python-pbcommand python-pbconsensuscore python-pbcore python-pbgenomicconsensus python-pbh5tools python-pbr python-pbsuite-utils python-pexpect python-pickleshare python-pil python-pkg-resources python-ply python-pmw python-prompt-toolkit python-ptyprocess python-py python-pyasn1 python-pyfits python-pyglet python-pygments python-pygraphviz python-pyparsing python-pyrex python-pysam python-pysqlite2 python-pytest python-qcli python-qt4 python-renderpm python-reportlab python-reportlab-accel python-requests python-roman python-rpy2 python-ruffus python-scipy python-seaborn python-setuptools python-simplegeneric python-simplejson python-singledispatch python-sip python-six python-sklearn python-sklearn-lib python-sortedcontainers python-sphinx python-sqlalchemy python-sqlalchemy-ext python-statsmodels python-statsmodels-lib python-subprocess32 python-support python-sympy python-sympy-doc python-tables python-tables-data python-tables-lib python-tk python-traitlets python-tz python-urllib3 python-wcwidth python-webencodings python-wxgtk3.0 python-wxversion python-xlrd python-xlwt python-yaml python2.7 python2.7-dev python2.7-minimal python3 python3-biopython python3-bs4 python3-bz2file python3-chardet python3-cutadapt python3-decorator python3-dendropy python3-html5lib python3-jdcal python3-lxml python3-minimal python3-networkx python3-nose python3-numpy python3-openpyxl python3-pil python3-pkg-resources python3-py python3-pymummer python3-pysam python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-screed python3-six python3-webencodings python3-xopen python3-yaml python3.5 python3.5-minimal qdbus qiime qiime-data qt-at-spi qt5-gtk-platformtheme qtchooser qtcore4-l10n qtltools qttranslations5-l10n r-base r-base-core r-base-dev r-base-html r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biomformat r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-deseq2 r-bioc-dnacopy r-bioc-ebseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-hilbertvis r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-limma r-bioc-mergeomics r-bioc-metagenomeseq r-bioc-multtest r-bioc-phyloseq r-bioc-qvalue r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-acepack r-cran-ade4 r-cran-adegenet r-cran-adegraphics r-cran-adephylo r-cran-ape r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bbmle r-cran-bio3d r-cran-bitops r-cran-blockmodeling r-cran-bold r-cran-boot r-cran-brew r-cran-catools r-cran-checkmate r-cran-chron r-cran-class r-cran-cluster r-cran-coda r-cran-codetools r-cran-colorspace r-cran-combinat r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-deldir r-cran-dichromat r-cran-digest r-cran-distory r-cran-domc r-cran-doparallel r-cran-dplyr r-cran-ellipse r-cran-evaluate r-cran-fail r-cran-fastcluster r-cran-fastmatch r-cran-fields r-cran-foreach r-cran-foreign r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-g.data r-cran-gam r-cran-gdata r-cran-genabel r-cran-genabel.data r-cran-getopt r-cran-ggplot2 r-cran-glmnet r-cran-globals r-cran-gmodels r-cran-googlevis r-cran-gplots r-cran-gridbase r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-igraph r-cran-inline r-cran-irlba r-cran-iterators r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-learnbayes r-cran-listenv r-cran-littler r-cran-luminescence r-cran-magrittr r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-minpack.lm r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nmf r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-optparse r-cran-permute r-cran-phangorn r-cran-phylobase r-cran-pkgkitten r-cran-pkgmaker r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-progress r-cran-proto r-cran-pscbs r-cran-qtl r-cran-quadprog r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-randomforest r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl r-cran-rcurl r-cran-readxl r-cran-registry r-cran-rentrez r-cran-reshape r-cran-reshape2 r-cran-rgl r-cran-ritis r-cran-rlumshiny r-cran-rncl r-cran-rnexml r-cran-rngtools r-cran-rocr r-cran-rotl r-cran-rpart r-cran-rredlist r-cran-rsqlite r-cran-scales r-cran-scatterd3 r-cran-segmented r-cran-sendmailr r-cran-seqinr r-cran-shape r-cran-shiny r-cran-shinybs r-cran-snow r-cran-solrium r-cran-sourcetools r-cran-sp r-cran-spam r-cran-spatial r-cran-spdep r-cran-stringi r-cran-stringr r-cran-survival r-cran-taxize r-cran-tcltk2 r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-treescape r-cran-uuid r-cran-vegan r-cran-viridis r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml r-cran-zoo r-doc-html r-mathlib r-other-mott-happy.hbrem r-recommended rake rambo-k rapmap rasmol raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-classifier-doc rdp-readseq readseq reapr relion-bin rename repeatmasker-recon reprof rhino rna-star rnahybrid roary rsem rsync rtax ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.1 ruby2.3 rubygems-integration saint salmon samtools sane-utils science-biology science-config science-tasks scrm scythe seaview seer seqan-apps seqprep seqtk sga sgml-base shared-mime-info sibsim4 sickle sigma-align sim4 sim4db smalt smithwaterman smrtanalysis snap snap-aligner sniffles snp-sites snpomatic soapdenovo soapdenovo2 sortmerna spaced spades sphinx-common sphinx-doc sphinx-rtd-theme-common sprai spread-phy sqlite3 squizz sra-toolkit sra-toolkit-libs0 srst2 ssake ssl-cert sspace ssw-align stacks staden staden-common staden-io-lib-utils steptalk subread suitename sumaclust sumatra sumtrees surankco swarm swi-prolog swi-prolog-nox swi-prolog-x sysstat t-coffee t1utils tabix tantan tasksel tasksel-data tcl tcl8.6 tcllib tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-extra texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc texlive-science texlive-science-doc theseus tigr-glimmer time tipa tk tk-table tk8.6 tk8.6-blt2.5 tklib tm-align tophat toppred transdecoder transrate-tools transtermhp tree-puzzle tree-puzzle-doc treeview treeviewx trimmomatic trinityrnaseq trinityrnaseq-examples ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-bitstream-vera ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ttf-liberation uc-echo ucf unzip update-inetd varna vcftools velvet velvetoptimiser vprerex vsearch wigeon wise wise-data x11-common x11-utils x11-xserver-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev xauth xbitmaps xdg-user-dirs xdg-utils xfonts-100dpi xfonts-encodings xfonts-utils xkb-data xml-core xorg-sgml-doctools xsltproc xterm xtrans-dev xz-utils zalign zip zlib1g-dev 0 upgraded, 0 newly installed, 2262 to remove and 0 not upgraded. After this operation, 10.5 GB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 245446 files and directories currently installed.) Removing abacas (1.3.1-3) ... Removing abyss (2.0.2-2) ... Removing acedb-other (4.9.39+dfsg.02-1) ... Removing acedb-other-belvu (4.9.39+dfsg.02-1) ... Removing acedb-other-dotter (4.9.39+dfsg.02-1) ... Removing adapterremoval (2.2.0-1) ... Removing adun.app (0.81-9+b2) ... Removing adun-core (0.81-9+b2) ... Removing qt5-gtk-platformtheme:amd64 (5.7.1+dfsg-3+deb9u2) ... Removing notification-daemon (3.20.0-1+b1) ... Removing pyscanfcs (0.2.3-3) ... Removing aegean (0.15.2+dfsg-1) ... Removing aevol (4.4-1+b4) ... Removing pirs (2.0.2+dfsg-5.1+b1) ... Removing murasaki (1.68.6-6+b4) ... Removing murasaki-common (1.68.6-6) ... Removing kmer (0~20150903+r2013-3) ... Removing atac (0~20150903+r2013-3) ... Removing gnuplot (5.0.5+dfsg1-6+deb9u1) ... Removing gnuplot-qt (5.0.5+dfsg1-6+deb9u1) ... Removing gnuplot-data (5.0.5+dfsg1-6+deb9u1) ... Removing aglfn (1.7-3) ... Removing alien-hunter (1.7-5) ... Removing prottest (3.4.2+dfsg-2) ... Removing jmodeltest (2.1.10+dfsg-5) ... Removing alter-sequence-alignment (1.3.3+dfsg-1) ... Removing altree (1.3.1-4+b2) ... Removing amap-align (2.2-6) ... Removing ampliconnoise (1.29-6) ... Removing andi (0.10-2) ... Removing anfo (0.98-5) ... Removing biomaj (1.2.3-11) ... Warning, BioMAJ database for MySQL is not deleted by process removal. Removing libsaxonhe-java (9.5.1.1+dfsg-2) ... Removing libsaxonb-java (9.1.0.8+dfsg-1) ... Removing libdom4j-java (1.6.1+dfsg.3-2+deb9u1) ... Removing libmsv-java (2009.1+dfsg1-5) ... Removing ant-optional (1.9.9-1+deb9u1) ... Removing ant-contrib (1.0~b3+svn177-9) ... Removing gbrowse (2.56+dfsg-2) ... Conf gbrowse disabled. apache2_invoke prerm: Disable configuration gbrowse Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of reload. Removing apache2 (2.4.25-3+deb9u9) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing libapache2-reload-perl (0.13-1) ... Removing libapache-dbi-perl (1.12-1) ... Removing libapache2-mod-perl2 (2.0.10-2+deb9u1) ... Removing apache2-bin (2.4.25-3+deb9u9) ... dpkg: warning: while removing apache2-bin, directory '/var/lib/apache2' not empty so not removed Removing apache2-data (2.4.25-3+deb9u9) ... Removing apache2-utils (2.4.25-3+deb9u9) ... Removing apbs (1.4-1+b1) ... Removing aragorn (1.2.38-1) ... Removing arden (1.0-3) ... Removing ariba (2.6.1+ds-1) ... Removing art-nextgen-simulation-tools (20160605+dfsg-2) ... Removing artemis (16.0.17+dfsg-1) ... Removing artfastqgenerator (0.0.20150519-2) ... Removing aspell-en (2016.11.20-0-0.1) ... update-default-aspell: Removing remove file "/var/lib/aspell/en.remove". Removing aspell (0.60.7~20110707-3+b2) ... Removing astro-tasks (1.0) ... Removing at-spi2-core (2.22.0-6+deb9u1) ... Removing augustus (3.2.3+dfsg-1) ... Removing augustus-data (3.2.3+dfsg-1) ... Removing autodock (4.2.6-3+b1) ... Removing autodock-vina (1.1.2-3+b6) ... Removing autogrid (4.2.6-3+b1) ... Removing axe-demultiplexer (0.3.2+dfsg1-1) ... Removing ballview (1.4.3~beta1-3) ... Removing circlator (1.4.1-1) ... Removing spades (3.9.1+dfsg-1) ... Removing reapr (1.0.18+dfsg-3) ... Removing bamtools (2.4.1+dfsg-1) ... Removing barrnap (0.7+dfsg-2) ... Removing bauble (0.9.7-2.1) ... Removing minia (1.6906-1+b2) ... Removing mapsembler2 (2.2.3+dfsg-3+b1) ... Removing bcftools (1.3.1-1+b1) ... Removing beagle (4.1~160727-86a+dfsg-1) ... Removing beast-mcmc (1.8.4+dfsg.1-1) ... Removing beast2-mcmc (2.4.4+dfsg-1) ... Removing roary (3.8.0+dfsg-1) ... Removing bedtools (2.26.0+dfsg-3) ... Removing phyml (3:3.2.0+dfsg-7+b1) ... Removing mrbayes (3.2.6+dfsg-1+b4) ... Removing trinityrnaseq (2.2.0+dfsg-2+b1) ... Removing berkeley-express (1.5.1-3+b1) ... Removing ksh (93u+20120801-3.1) ... Removing mhap (2.1.1+dfsg-1) ... Removing gfortran-4.9 (4.9.2-10+deb8u1) ... Removing g++-4.9 (4.9.2-10+deb8u1) ... Removing gcc-4.9 (4.9.2-10+deb8u1) ... Removing r-base-dev (3.3.3-1) ... Removing bio-eagle (2.3-3) ... Removing bio-rainbow (2.0.4-1+b1) ... Removing libbio-coordinate-perl (1.7.1-1) ... Removing predictprotein (1.1.06-1) ... Removing bioperl-run (1.7.1-3) ... Removing biosquid (1.9g+cvs20050121-7) ... Removing smrtanalysis (0~20161126) ... Removing pbalign (0.3.0-1) ... Removing pbsuite (15.8.24+dfsg-2) ... Removing pbhoney (15.8.24+dfsg-2) ... Removing python-pbbanana (15.8.24+dfsg-2) ... Removing microbiomeutil (20101212+dfsg1-1) ... Removing chimeraslayer (20101212+dfsg1-1) ... Removing science-biology (1.7) ... Removing science-config (1.7) ... Removing med-bio (3.0.1) ... Removing med-config (3.0.1) ... Removing blends-common (0.6.96) ... Removing plip (1.3.3+dfsg-1) ... Removing pymol (1.8.4.0+dfsg-1) ... Removing python-pmw (1.3.2-6) ... Removing plasmidomics (0.2.0-5) ... Removing python-tk (2.7.13-1) ... Removing blt (2.5.3+dfsg-3) ... Removing giira (0.0.20140625-1) ... Removing tophat (2.1.1+dfsg-2+b2) ... Removing sspace (2.1.1+dfsg-2) ... Removing srst2 (0.2.0-4) ... Removing rsem (1.2.31+dfsg-1) ... Removing boxshade (3.3.1-10) ... Removing brig (0.95+dfsg-1) ... Removing build-essential (12.3) ... Removing gasic (0.0.r19-1) ... Removing bwa (0.7.15-2+deb9u1) ... Removing bzip2-doc (1.0.6-8.1) ... Removing trimmomatic (0.36+dfsg-1) ... Removing qiime (1.8.0+dfsg-4) ... Removing king (2.23.161103+dfsg1-1) ... Removing figtree (1.4.2+dfsg-2) ... Removing picard-tools (2.8.1+dfsg-1) ... Removing jmol-applet (14.6.4+2016.11.05+dfsg1-3) ... Removing treeview (1.1.6.4+dfsg1-2) ... Removing cgview (0.0.20100111-2) ... Removing fastqc (0.11.5+dfsg-6) ... Removing neobio (0.0.20030929-2) ... Removing javahelp2 (2.0.05.ds1-9) ... Removing rhino (1.7.7.1-1) ... Removing junit4 (4.12-4) ... Removing fop (1:2.1-6) ... Removing dbus-java-bin (2.8-6) ... Removing spread-phy (1.0.7+dfsg-1) ... Removing ruby (1:2.3.3) ... Removing ruby2.3 (2.3.3-1+deb9u8) ... Removing cassiopee (1.0.5-1+b1) ... Removing transdecoder (3.0.1+dfsg-1) ... Removing cd-hit (4.6.6-2) ... Removing nast-ier (20101212+dfsg1-1+b1) ... Removing cdbfasta (0.99-20100722-3) ... Removing cdbs (0.4.150) ... Removing circos-tools (0.22-1) ... Removing circos (0.69.4+dfsg-1) ... Removing clearcut (1.0.9-1+b1) ... Removing clonalframe (1.2-5) ... Removing theseus (3.3.0-5+b1) ... Removing mrs (6.0.5+dfsg-2+b2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing clustalo (1.2.4-1) ... Removing clustalw (2.1+lgpl-5) ... Removing clustalx (2.1+lgpl-5) ... Removing codonw (1.4.4-3+b1) ... Removing colord (1.3.3-2) ... Removing colord-data (1.3.3-2) ... Removing concavity (0.1+dfsg.1-1) ... Removing conservation-code (20110309.0-5) ... Removing x11-xserver-utils (7.7+7+b1) ... Removing cpp-4.9 (4.9.2-10+deb8u1) ... Removing mapdamage (2.0.6+dfsg-2) ... Removing liblapack-dev (3.7.0-2) ... Removing libblas-dev (3.7.0-2) ... Removing gfortran (4:6.3.0-4) ... Removing crac (2.5.0+dfsg-1) ... Removing critterding (1.0-beta12.1-1.3+b1) ... Removing exim4 (4.89-2+deb9u7) ... Removing mailutils (1:3.1.1-1) ... update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Removing exim4-daemon-light (4.89-2+deb9u7) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing exim4-base (4.89-2+deb9u7) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing cron (3.0pl1-128+deb9u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing pp-popularity-contest (1.0.6-2+b4) ... Removing curl (7.52.1-5+deb9u10) ... Removing cutadapt (1.12-2) ... Removing macs (2.1.1.20160309-1) ... Removing cython (0.25.2-1) ... Removing daligner (1.0+20161119-1) ... Removing dascrubber (0~20160601-2) ... Removing datamash (1.0.7-1) ... Removing dawg (1.2-1+b1) ... Removing dazzdb (1.0+20161112-2) ... Removing policykit-1 (0.105-18+deb9u1) ... Removing libpam-systemd:amd64 (232-25+deb9u12) ... Removing dbus (1.10.32-0+deb9u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing libgtk-3-bin (3.22.11-1) ... Removing debichem-tasks (0.0.6) ... Removing mysql-client (5.5.9999+default) ... Removing default-mysql-client (1.0.2) ... Removing python3-yaml (3.12-1) ... Removing python3-html5lib (0.999999999-1) ... Removing python3-six (1.10.0-3) ... Removing python3-scipy (0.18.1-2) ... Removing python3-cutadapt (1.12-2) ... Removing python3-xopen (0.1.1-1) ... Removing dialign (2.2.1-8) ... Removing dialign-tx (1.0.2-9) ... Removing dialign-tx-data (1.0.2-9) ... Removing dictionaries-common (1.27.2) ... Removing 'diversion of /usr/share/dict/words to /usr/share/dict/words.pre-dictionaries-common by dictionaries-common' Removing dindel (1.01+dfsg-4+b1) ... Removing discosnp (1.2.6-1+b2) ... Removing disulfinder (1.2.11-6) ... Removing disulfinder-data (1.2.11-6) ... Removing laptop-detect (0.13.8) ... Removing dmidecode (3.0-4) ... Removing dnaclust (3-4+b2) ... Removing python-sphinx (1.4.9-2) ... Removing python-docutils (0.13.1+dfsg-2) ... Removing docutils-common (0.13.1+dfsg-2) ... Removing sphinx-doc (1.4.9-2) ... Removing docutils-doc (0.13.1+dfsg-2) ... Removing dssp (2.2.1-3+b2) ... Removing dvipng (1.14-2+b3) ... Removing dwgsim (0.1.11-3+b1) ... Removing ea-utils (1.1.2+dfsg-4) ... Removing ecopcr (0.5.0+dfsg-1) ... Removing edtsurf (0.2009-4+b1) ... Removing eigensoft (6.1.4+dfsg-1+b1) ... Removing emacsen-common (2.0.8) ... Removing embassy-domainatrix (0.1.660-1) ... Removing embassy-domalign (0.1.660-1) ... Removing embassy-domsearch (1:0.1.660-1) ... Removing jemboss (6.6.0+dfsg-6) ... Removing emboss (6.6.0+dfsg-6) ... Removing emboss-data (6.6.0+dfsg-6) ... Removing emboss-lib (6.6.0+dfsg-6) ... Removing exim4-config (4.89-2+deb9u7) ... Removing fsa (1.15.9+dfsg-3) ... Removing exonerate (2.4.0-2) ... Removing libnetlib-java (0.9.3-3) ... Removing f2j (0.8.1+dfsg-2) ... Removing fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing falcon (1.8.6-1.1) ... Removing fastahack (0.0+20160702-1+b1) ... Removing python3-pymummer (0.10.1-1) ... Removing iva (1.0.8+ds-1) ... Removing fastaq (3.14.0-1) ... Removing fastdnaml (1.2.2-11+b1) ... Removing fastlink (4.1P-fix100+dfsg-1+b1) ... Removing fastml (3.1-3) ... Removing fastqtl (2.184+dfsg-5) ... Removing parsnp (1.2+dfsg-3) ... Removing gubbins (2.2.0-1) ... Removing fasttree (2.1.9-1) ... Removing fastx-toolkit (0.0.14-3) ... Removing hhsuite (3.0~beta2+dfsg-3) ... Removing ffindex (0.9.9.7-3) ... Removing khmer:amd64 (2.0+dfsg-10) ... Removing khmer-common (2.0+dfsg-10) ... Removing filo (1.1.0-3+b1) ... Removing fitgcp (0.0.20150429-1) ... Removing flexbar (2.50-2+b1) ... Removing fml-asm (0.1-2+b1) ... Removing pycorrfit (0.9.9+dfsg-2) ... Removing rasmol (2.7.5.2-2) ... update-alternatives: using /usr/bin/rasmol-classic to provide /usr/bin/rasmol (rasmol) in auto mode Removing libvte9 (1:0.28.2-5+b2) ... Removing massxpert (3.6.1-1) ... Removing libqt5svg5:amd64 (5.7.1~20161021-2+b2) ... Removing libpoppler46:amd64 (0.26.5-2+deb8u4) ... Removing vprerex (6.5.3-1+b2) ... Removing xterm (327-2) ... Removing texlive-fonts-extra (2016.20170123-5) ... Removing fonts-cabin (1.5-2) ... Removing fonts-circos-symbols (0.69.4+dfsg-1) ... Removing fonts-cmu (0.7.0-3) ... Removing fonts-comfortaa (2.003-1) ... Removing fonts-croscore (20161116-1) ... Removing fonts-crosextra-caladea (20130214-1) ... Removing fonts-crosextra-carlito (20130920-1) ... Removing gamgi (0.17.1-1+b1) ... Removing ttf-dejavu (2.37-1) ... Removing fonts-dejavu (2.37-1) ... Removing ttf-dejavu-core (2.37-1) ... Removing ttf-dejavu-extra (2.37-1) ... Removing fonts-dejavu-extra (2.37-1) ... Removing fonts-dejavu-core (2.37-1) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing fonts-ebgaramond (0.016-1) ... Removing fonts-ebgaramond-extra (0.016-1) ... Removing salmon (0.7.2+ds1-2+b1) ... Removing sphinx-rtd-theme-common (0.1.9-1) ... Removing r-cran-treescape (1.10.18-6) ... Removing r-cran-rgl (0.96.0-1) ... Removing fonts-freefont-otf (20120503-6) ... Removing steptalk (0.10.0-6+b3) ... Removing libsteptalk0 (0.10.0-6+b3) ... Removing gnustep-dl2-postgresql-adaptor (0.12.0-15.1) ... Removing libgnustep-dl2-0d (0.12.0-15.1) ... Removing gnustep-gui-runtime (0.25.0-4+b1) ... Removing gnustep-back0.25 (0.25.0-2) ... Removing gnustep-back0.25-cairo (0.25.0-2) ... Removing gnustep-back-common (0.25.0-2) ... Removing fonts-freefont-ttf (20120503-6) ... Removing fonts-gfs-artemisia (1.1-5) ... Removing fonts-gfs-complutum (1.1-6) ... Removing fonts-gfs-didot (1.1-6) ... Removing fonts-gfs-neohellenic (1.1-6) ... Removing fonts-gfs-olga (1.1-5) ... Removing fonts-gfs-solomos (1.1-5) ... Removing fonts-inconsolata (001.010-5) ... Removing fonts-junicode (0.7.8-2) ... Removing fonts-lato (2.0-1) ... Removing ttf-liberation (1:1.07.4-2) ... Removing fonts-liberation (1:1.07.4-2) ... Removing fonts-linuxlibertine (5.3.0-2) ... Removing lmodern (2.004.5-3) ... Removing tipa (2:1.3-20) ... Removing fonts-lobstertwo (2.0-2) ... Removing fonts-lobster (2.0-2) ... Removing poretools (0.6.0+dfsg-2) ... Removing python-seaborn (0.7.1-4) ... Removing microbegps (1.0.0-2) ... Removing python-matplotlib-venn (0.11.5-1) ... Removing r-bioc-deseq2 (1.14.1-1) ... Removing r-bioc-metagenomeseq (1.16.0-2) ... Removing r-cran-glmnet (2.0-5-1) ... Removing fonts-noto-hinted (20161116-1) ... Removing fonts-noto-mono (20161116-1) ... Removing fonts-oflb-asana-math (000.907-6) ... Removing fonts-roboto-hinted (2:0~20160106-2) ... Removing fonts-sil-gentium (20081126:1.03-1) ... Removing fonts-sil-gentium-basic (1.1-7) ... Removing fonts-sil-gentiumplus (5.000-1) ... Removing fonts-sil-gentiumplus-compact (5.000-2) ... Removing fonts-stix (1.1.1-4) ... Removing fonts-texgyre (20160520-1) ... Removing freecontact (1.0.21-5) ... Removing pymol-data (1.8.4.0+dfsg-1) ... Removing python-opengl (3.1.0+dfsg-1) ... Removing maqview (0.2.5-7+b1) ... Removing freeglut3:amd64 (2.8.1-3) ... Removing fsm-lite (1.0-2) ... Removing garli (2.1-1) ... Removing garlic (1.6-1.1+b2) ... Removing mummer (3.23+dfsg-2) ... Removing gff2ps (0.98d-5) ... Removing gawk (1:4.1.4+dfsg-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing gdpc (2.2.5-6) ... Removing genometools (1.5.9+ds-4) ... Removing ltrsift (1.0.2-7) ... Removing libgenometools0 (1.5.9+ds-4) ... Removing genometools-common (1.5.9+ds-4) ... Removing gentle (1.9+cvs20100605+dfsg1-5) ... Removing gff2aplot (2.0-8+b1) ... Removing gfortran-6 (6.3.0-18+deb9u1) ... Removing ghemical (3.0.0-2) ... Removing raster3d (3.0-3-2+b1) ... Removing ps2eps (1.68+binaryfree-2) ... Removing glam2 (1064-3+b1) ... Removing glpk-utils (4.61-1) ... Removing gnupg (2.1.18-8~deb9u4) ... Removing gnupg-agent (2.1.18-8~deb9u4) ... Removing libgnustep-gui0.25 (0.25.0-4+b1) ... Removing gnustep-gui-common (0.25.0-4) ... Removing mknfonts.tool (0.5-11+b5) ... Removing libsqlclient1.7 (1.7.3-2.1) ... Removing libperformance0.5 (0.5.0-1) ... Removing gnustep-base-runtime (1.24.9-3.1+deb9u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing graphlan (1.1-2) ... Removing sga (0.10.15-2) ... Removing python-ruffus (2.6.3+dfsg-4) ... Removing python-pygraphviz (1.4~rc1-1) ... Removing grinder (0.5.4-1) ... Removing gromacs (2016.1-2) ... Removing gromacs-data (2016.1-2) ... Removing python3-renderpm:amd64 (3.3.0-2+deb9u1) ... Removing python-renderpm:amd64 (3.3.0-2+deb9u1) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... Removing gstreamer1.0-plugins-base:amd64 (1.10.4-1+deb9u1) ... Removing libgtk2.0-bin (2.24.31-2) ... Removing libmailutils5:amd64 (1:3.1.1-1) ... Removing guile-2.0-libs:amd64 (2.0.13+1-4) ... Removing gwama (2.2.2+dfsg-1) ... Removing harvest-tools (1.3-1) ... Removing hdf5-tools (1.10.0-patch1+docs-3+deb9u1) ... Removing hhsuite-data (3.0~beta2+dfsg-3) ... Removing imagemagick (8:6.9.7.4+dfsg-11+deb9u8) ... Removing imagemagick-6.q16 (8:6.9.7.4+dfsg-11+deb9u8) ... Removing hilive (0.3-2) ... Removing hisat2 (2.0.5-1) ... Removing macsyfinder (1.0.2-3) ... Removing hmmer (3.1b2+dfsg-5) ... Removing hmmer2 (2.3.2-13) ... Removing hyphy-mpi (2.2.7+dfsg-1+b2) ... Removing hyphygui (2.2.7+dfsg-1+b2) ... Removing hyphy-common (2.2.7+dfsg-1) ... Removing icc-profiles-free (2.0.1+dfsg-1) ... Removing jmol (14.6.4+2016.11.05+dfsg1-3) ... Removing libjmol-java (14.6.4+2016.11.05+dfsg1-3) ... Removing icedtea-netx-common (1.6.2-3.1+deb9u1) ... Removing libicu-dev (57.1-6+deb9u4) ... Removing icu-devtools (57.1-6+deb9u4) ... Removing idba (1.1.3-1) ... Removing ifupdown (0.8.19) ... Removing libmagickcore-6.q16-3-extra:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Removing libmagickwand-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Removing libmagickcore-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Removing imagemagick-common (8:6.9.7.4+dfsg-11+deb9u8) ... Removing indelible (1.03-2+b1) ... Removing infernal (1.1.2-1) ... Removing ipig (0.0.r5-2) ... Removing isc-dhcp-client (4.3.5-3+deb9u1) ... Removing iproute2 (4.9.0-1+deb9u1) ... Removing ipython (5.1.0-3) ... Removing iqtree (1.5.3+dfsg-2) ... Removing isc-dhcp-common (4.3.5-3+deb9u1) ... Removing python-ballview (1.4.3~beta1-3) ... Removing libballview1.4 (1.4.3~beta1-3) ... Removing libqtwebkit4:amd64 (2.3.4.dfsg-9.1) ... Removing libgstreamer-plugins-base1.0-0:amd64 (1.10.4-1+deb9u1) ... Removing iso-codes (3.75-1) ... Removing isympy (1.0-3) ... Removing isympy-common (1.0-3) ... Removing jaligner (1.0+dfsg-4) ... Removing libfop-java (1:2.1-6) ... Removing mauve-aligner (2.4.0+4734-3) ... Removing javascript-common (11) ... Removing jellyfish (2.2.6-1+b1) ... Removing libfreehep-graphicsio-emf-java (2.1.1-emfplus+dfsg1-3) ... Removing libfreehep-graphicsio-swf-java (2.1.1+dfsg-2) ... Removing libfreehep-graphicsio-svg-java (2.1.1-4) ... Removing libfreehep-xml-java (2.1.2+dfsg1-4) ... Removing kalign (1:2.03+20110620-3) ... Removing kineticstools (0.6.1+20161222-1) ... Removing python-kineticstools (0.6.1+20161222-1) ... Removing kineticstools-data (0.6.1+20161222-1) ... Removing king-probe (2.13.110909-2) ... Removing kissplice (2.4.0-p1-1) ... Removing kmc (2.3+dfsg-5) ... Removing kraken (0.10.5~beta-2+b1) ... Removing krb5-locales (1.15-1+deb9u1) ... Removing lambda-align (1.0.1-2) ... Removing last-align (830-1) ... Removing leaff (0~20150903+r2013-3) ... Removing lefse (1.0+20160802-1) ... Removing libace-perl (1.92-4+b1) ... Removing sra-toolkit (2.8.1-2+dfsg-2) ... Removing pbdagcon (0.3+20161121+ds-1) ... Removing reprof (1.0.1-4) ... Removing librg-reprof-bundle-perl (1.0.1-4) ... Removing libai-fann-perl (0.10-3+b2) ... Removing mariadb-client-10.1 (10.1.45-0+deb9u1) ... Removing mariadb-client-core-10.1 (10.1.45-0+deb9u1) ... Removing libaio1:amd64 (0.3.110-3) ... Removing libmoose-perl (2.1807-1) ... Removing libdevel-overloadinfo-perl (0.004-1) ... Removing libtest-files-perl (0.14-1) ... Removing libtest-most-perl (0.35-1) ... Removing libtest-differences-perl (0.64-1) ... Removing libtext-diff-perl (1.44-1) ... Removing libalgorithm-merge-perl (0.08-3) ... Removing libalgorithm-diff-xs-perl (0.04-4+b2) ... Removing libalgorithm-munkres-perl (0.08-3) ... Removing libglpk-java (1.7.0-1) ... Removing python-cvxopt (1.1.4-1.5+deb9u1) ... Removing libglpk40:amd64 (4.61-1) ... Removing libamd2:amd64 (1:4.5.4-1) ... Removing libglpk36:amd64 (4.55-1) ... Removing libamd2.3.1:amd64 (1:4.2.1-3) ... Removing libanfo0 (0.98-5) ... Removing libvm-ec2-perl (1.28-2) ... Removing libanyevent-cachedns-perl (0.08-2) ... Removing libanyevent-http-perl (2.23-1) ... Removing libanyevent-perl (7.130-2) ... Removing libao4 (1.2.2-1) ... Removing libao-common (1.2.2-1) ... Removing libapache-mime4j-java (0.7.2-4) ... Removing rdp-classifier (2.10.2-1) ... Removing libbatik-java (1.8-4+deb9u2) ... Removing libxmlgraphics-commons-java (2.1-2) ... Removing libbsf-java (1:2.4.0-5) ... Removing libaprutil1-ldap:amd64 (1.5.4-3) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Removing libaprutil1:amd64 (1.5.4-3) ... Removing libapr1:amd64 (1.5.2-5) ... Removing libarchive-extract-perl (0.80-1) ... Removing logol-bin (1.7.5-1) ... Removing swi-prolog (7.2.3+dfsg-6) ... Removing swi-prolog-x (7.2.3+dfsg-6) ... Removing swi-prolog-nox (7.2.3+dfsg-6) ... Removing libarchive13:amd64 (3.2.2-2+deb9u2) ... Removing libargtable2-0 (13-1) ... Removing seer (1.1.2-3) ... Removing libarmadillo7 (1:7.600.2+dfsg-2) ... Removing libarpack2 (3.4.0-1+b1) ... Removing libarray-compare-perl (3.0.0-1) ... Removing libarray-utils-perl (0.5-1) ... Removing libart-2.0-2:amd64 (2.3.21-2) ... Removing libgfortran-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Removing libstdc++-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Removing libgcc-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Removing libasan1:amd64 (4.9.2-10+deb8u1) ... Removing libgfortran-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libcofoja-java (1.3-1) ... Removing libasm-java (5.2-2) ... Removing libvisual-0.4-plugins:amd64 (1:0.4.0+dfsg1-10) ... Removing libsdl1.2debian:amd64 (1.2.15+dfsg1-4) ... Removing libaspell15:amd64 (0.60.7~20110707-3+b2) ... Removing libasprintf-dev:amd64 (0.19.8.1-2+deb9u1) ... Removing libasprintf0v5:amd64 (0.19.8.1-2+deb9u1) ... Removing libasync-interrupt-perl (1.21-1+b2) ... Removing libpicard-java (2.8.1+dfsg-1) ... Removing libguava-java (19.0-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-2) ... Removing python-glade2 (2.24.0-5.1) ... Removing python-gtk2 (2.24.0-5.1) ... Removing plink1.9 (1.90~b3.45-170113-1) ... Removing r-base (3.3.3-1) ... Removing r-recommended (3.3.3-1) ... Removing r-bioc-phyloseq (1.19.1-2) ... Removing r-bioc-multtest (2.30.0-1) ... Removing r-cran-adephylo (1.1-10-2) ... Removing r-cran-adegenet (2.0.1-1) ... Removing r-cran-spdep (0.6-9-1) ... Removing libsuperlu5:amd64 (5.2.1+dfsg1-2) ... Removing r-cran-qtl (1.40-8-1) ... Removing r-cran-phangorn (2.1.1-1) ... Removing libatlas3-base (3.10.3-1+b1) ... Removing libatm1:amd64 (1:2.5.1-2) ... Removing python-qt4 (4.11.4+dfsg-2+b1) ... Removing libqt4-declarative:amd64 (4:4.8.7+dfsg-11) ... Removing libqt4-svg:amd64 (4:4.8.7+dfsg-11) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing sane-utils (1.0.25-4.1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing libsane:amd64 (1.0.25-4.1) ... Removing libqt5printsupport5:amd64 (5.7.1+dfsg-3+deb9u2) ... Removing libavalon-framework-java (4.2.0-9) ... Removing libjets3t-java (0.8.1+dfsg-3) ... Removing libaxis-java (1.4-25) ... Removing libpod-readme-perl (1.1.2-1) ... Removing libnamespace-autoclean-perl (0.28-1) ... Removing libdevel-partialdump-perl (0.18-2) ... Removing libnamespace-clean-perl (0.27-1) ... Removing libb-hooks-endofscope-perl (0.21-1) ... Removing libmultidimensional-perl (0.012-1+b1) ... Removing libbareword-filehandles-perl (0.004-1+b1) ... Removing libb-hooks-op-check-perl (0.19-3+b1) ... Removing python-ball (1.4.3~beta1-3) ... Removing libball1.4 (1.4.3~beta1-3) ... Removing libball1.4-data (1.4.3~beta1-3) ... Removing smalt (0.7.6-6) ... Removing libbambamc0 (0.0.50-1) ... Removing libbamtools2.3.0 (2.3.0+dfsg-2) ... Removing transrate-tools (1.0.0-1+b1) ... Removing sniffles (1.0.2+ds-1) ... Removing libbamtools2.4.0 (2.4.1+dfsg-1) ... Removing libitext-java (2.1.7-11) ... Removing libbcmail-java (1.56-1+deb9u2) ... Removing libbcpkix-java (1.56-1+deb9u2) ... Removing libbcprov-java (1.56-1+deb9u2) ... Removing libbio-asn1-entrezgene-perl (1.720-1) ... Removing libbio-graphics-perl (2.40-1) ... Removing libbio-perl-run-perl (1.7.1-3) ... Removing libbio-scf-perl (1.03-3) ... Removing libbiojava-java (1:1.7.1-5) ... Removing libbiojava1.7-java (1:1.7.1-5) ... Removing libdate-calc-xs-perl (6.4-1+b2) ... Removing libdate-calc-perl (6.4-1) ... Removing libbit-vector-perl (7.4-1+b2) ... Removing r-cran-rlumshiny (0.1.1-1) ... Removing r-cran-luminescence (0.6.4-1) ... Removing r-cran-minpack.lm (1.2-1-1) ... Removing r-cran-igraph (1.0.1-1+deb9u1) ... Removing r-cran-irlba (2.1.2-1) ... Removing libopenblas-base (0.2.19-3) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Removing r-cran-gam (1.14-1) ... Removing r-cran-phylobase (0.8.2-1) ... Removing r-cran-rnexml (2.0.7-1) ... Removing r-cran-taxize (0.8.0-1) ... Removing python-tables (3.3.0-5) ... Removing python-tables-lib (3.3.0-5) ... Removing libblosc1 (1.11.1+ds2-1) ... Removing libboost-atomic1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-timer1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-chrono1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-timer1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-chrono1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-date-time1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-filesystem1.55.0:amd64 (1.55.0+dfsg-3) ... Removing progressivemauve (1.2.0+4713-2+b2) ... Removing mira-rfam-12s-rrna (4.9.6-2) ... Removing mira-assembler (4.9.6-2) ... Removing libboost-iostreams1.55.0:amd64 (1.55.0+dfsg-3) ... Removing qtltools (1.1+dfsg-1) ... Removing mothur (1.38.1.1-1) ... Removing libboost-math1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libzeep3.0v5 (3.0.2-4+b2) ... Removing libboost-math1.62.0:amd64 (1.62.0+dfsg-4) ... Removing prime-phylo (1.0.11-4+b3) ... Removing libboost-mpi1.62.0 (1.62.0+dfsg-4) ... Removing libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-program-options1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-random1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-random1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-regex1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libcassie1v5 (1.0.5-1+b1) ... Removing libboost-regex1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-serialization1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-serialization1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-thread1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-system1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libmems-1.6-1v5:amd64 (1.6.0+4725-4) ... Removing libboost-thread1.62.0:amd64 (1.62.0+dfsg-4) ... Removing physamp (0.2.0-1+b1) ... Removing maffilter (1.1.0-1+dfsg-2+b2) ... Removing libbpp-phyl-omics1v5 (2.2.0-2) ... Removing libbpp-phyl9v5:amd64 (2.2.0-1+b1) ... Removing libbpp-seq-omics1v5:amd64 (2.2.0-1) ... Removing libbpp-seq9v5:amd64 (2.2.0-1+b1) ... Removing libbsd-resource-perl (1.2910-1+b1) ... Removing lynx-cur (2.8.9dev11-1) ... Removing lynx (2.8.9dev11-1) ... Removing libxt-dev:amd64 (1:1.1.5-1) ... Removing libx11-dev:amd64 (2:1.6.4-3+deb9u1) ... Removing libbytecode-java (0.92.svn.20090106-2) ... Removing libcrypt-ssleay-perl (0.73.04-2) ... Removing libbytes-random-secure-perl (0.28-1) ... Removing libbz2-dev:amd64 (1.0.6-8.1) ... Removing libpng12-dev:amd64 (1.2.50-2+deb8u3) ... Removing zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Removing libpcre3-dev:amd64 (2:8.39-3) ... Removing libncursesw5-dev:amd64 (6.0+20161126-1+deb9u2) ... Removing libcaca0:amd64 (0.99.beta19-2.1~deb9u1) ... Removing libcache-cache-perl (1.08-2) ... Removing texlive-science-doc (2016.20170123-5) ... Removing texlive-science (2016.20170123-5) ... Removing prosper (1.00.4+cvs.2007.05.01-4.1) ... Removing texlive-pstricks (2016.20170123-5) ... Removing trinityrnaseq-examples (2.2.0+dfsg-2) ... Removing r-cran-abind (1.4-5-1) ... Removing libcanberra-gtk3-module:amd64 (0.30-3) ... Removing libcanberra-gtk3-0:amd64 (0.30-3) ... Removing libcanberra0:amd64 (0.30-3) ... Removing mash (1.1.1-2) ... Removing libcapnp-0.5.3 (0.5.3-2) ... Removing libtest-output-perl (1.03-1) ... Removing libcapture-tiny-perl (0.44-1) ... Removing libcarp-always-perl (0.12-1) ... Removing libcarp-clan-perl (6.06-1) ... Removing libvamsas-client-java (0.2~git2011.10.17+1b42648-1) ... Removing libcastor-xml-java (1.3.2-4) ... Removing libcastor-core-java (1.3.2-4) ... Removing libcbf0:amd64 (0.9.2.2-1+b1) ... Removing libcdparanoia0:amd64 (3.10.2+debian-11) ... Removing libcfitsio2:amd64 (3.370-2+deb8u1) ... Removing python-astropy (1.3-8) ... Removing python-pyfits (1:3.4-4) ... Removing libcfitsio5:amd64 (3.410-1) ... Removing libcgi-fast-perl (1:2.12-1) ... Removing libcgi-session-perl (4.48-3) ... Removing libcgi-pm-perl (4.35-1) ... Removing libclass-c3-xs-perl (0.14-1+b1) ... Removing libexception-class-perl (1.42-1) ... Removing libclass-data-inheritable-perl (0.08-2) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.20-1) ... Removing libclass-inspector-perl (1.31-1) ... Removing libclass-load-xs-perl (0.09-2+b1) ... Removing libclass-load-perl (0.23-1) ... Removing libmoox-handlesvia-perl (0.001008-2) ... Removing libmoo-perl (2.002005-1) ... Removing libdata-perl-perl (0.002009-1) ... Removing librole-tiny-perl (2.000005-1) ... Removing libclass-method-modifiers-perl (2.12-1) ... Removing libclass-tiny-perl (1.006-1) ... Removing libclass-xsaccessor-perl (1.19-2+b7) ... Removing libclone-perl (0.38-2+b1) ... Removing libcloog-isl4:amd64 (0.18.4-1+b1) ... Removing libcneartree5:amd64 (3.1.1-2.1+b2) ... Removing libcolamd2:amd64 (1:4.5.4-1) ... Removing libcolamd2.8.0:amd64 (1:4.2.1-3) ... Removing libcolorhug2:amd64 (1.3.3-2) ... Removing libjson-xs-perl (3.030-1) ... Removing libtypes-serialiser-perl (1.0-1) ... Removing libev-perl (4.22-1+b1) ... Removing libcommon-sense-perl (3.74-2) ... Removing rdp-alignment (1.2.0-2) ... Removing libmpj-java (0.44+dfsg-3) ... Removing libhttpmime-java (4.5.2-2) ... Removing libhttpclient-java (4.5.2-2) ... Removing libcommons-collections3-java (3.2.2-1) ... Removing libjung-free-java (2.0.1+dfsg-1) ... Removing libcommons-collections4-java (4.1-1) ... Removing surankco (0.0.r5+dfsg-1) ... Removing libhtsjdk-java (2.8.1+dfsg-1) ... Removing libcommons-compress-java (1.13-1) ... Removing libcommons-configuration-java (1.10-4) ... Removing libcommons-dbcp-java (1.4-5) ... Removing libcommons-discovery-java (0.5-3) ... Removing libcommons-httpclient-java (3.1-12) ... Removing libcommons-jexl2-java (2.1.1-3) ... Removing libcommons-lang3-java (3.5-1) ... Removing libj2ssh-java (0.2.9-4) ... Removing libcommons-math-java (2.2-6) ... Removing libcommons-math3-java (3.6.1-2) ... Removing libcommons-net-java (3.5-1) ... Removing libcommons-net2-java (2.2-2) ... Removing libcommons-pool-java (1.6-3) ... Removing libconfig-general-perl (2.63-1) ... Removing profisis (1.0.11-3) ... Removing predictnls (1.0.20-3) ... Removing libconfig-inifiles-perl (2.94-1) ... Removing libconvert-binary-c-perl (0.78-1+b1) ... Removing libmime-tools-perl (5.508-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libcpan-changes-perl (0.400002-1) ... Removing libmodule-build-perl (0.422000-1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.150010-1) ... Removing libcqrlib2:amd64 (1.1.2-2.1+b2) ... Removing libcr0 (0.8.5-2.3+b1) ... Removing libcrypt-random-seed-perl (0.03-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-2) ... Removing libcrypto++6 (5.6.4-7) ... Removing libcupsfilters1:amd64 (1.11.6-3+deb9u1) ... Removing staden (2.0.0+b11-2+b1) ... Removing r-bioc-cummerbund (2.16.0-2) ... Removing r-bioc-gviz (1.18.1-1) ... Removing r-bioc-biovizbase (1.22.0-2) ... Removing r-bioc-variantannotation (1.20.2-1+b1) ... Removing libstaden-read1 (1.13.7-1) ... Removing libxerces-c3.1:amd64 (3.1.4+debian-2+deb9u1) ... Removing libcvector2:amd64 (1.0.3.1-1.1+b2) ... Removing libdata-dumper-simple-perl (0.11-5) ... Removing libgetopt-long-descriptive-perl (0.100-1) ... Removing libeval-closure-perl (0.14-1) ... Removing libsoftware-license-perl (0.103012-1) ... Removing libdata-section-perl (0.200006-1) ... Removing metastudent (2.0.1-4) ... Removing libgo-perl (0.15-5) ... Removing libdate-manip-perl (6.57-1) ... Removing libdbd-mysql-perl (4.041-2) ... Removing libdbd-pg-perl (3.5.3-1+b2) ... Removing libdbd-sqlite3-perl (1.54-1) ... Removing stacks (1.44-2+b1) ... Removing libdbi-perl (1.636-1+b1) ... Removing qt-at-spi:amd64 (0.4.0-5) ... Removing libqt4-dbus:amd64 (4:4.8.7+dfsg-11) ... Removing libdbus-java (2.8-6) ... Removing libdevel-lexalias-perl (0.05-1+b4) ... Removing libdevel-caller-perl (2.06-1+b4) ... Removing liblog-dispatch-perl (2.58-1) ... Removing libdevel-globaldestruction-perl (0.14-1) ... Removing libdevel-stacktrace-perl (2.0200-1) ... Removing libpod-coverage-perl (0.23-1) ... Removing libdevel-symdump-perl (2.17-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libdirectfb-1.2-9:amd64 (1.2.10.0-8+deb9u1) ... Removing libvcflib-tools (1.0.0~rc1+dfsg1-3) ... Removing smithwaterman (0.0+20160702-1+b1) ... Removing libdisorder0:amd64 (0.0.2-1) ... Removing libmodule-runtime-conflicts-perl (0.003-1) ... Removing libdist-checkconflicts-perl (0.11-1) ... Removing rapmap (0.4.0+dfsg-2) ... Removing libdivsufsort3:amd64 (2.0.1-2) ... Removing libdjvulibre21:amd64 (3.5.27.1-7) ... Removing libdjvulibre-text (3.5.27.1-7) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export162 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Removing libqt5xml5:amd64 (5.7.1+dfsg-3+deb9u2) ... Removing libqt5widgets5:amd64 (5.7.1+dfsg-3+deb9u2) ... Removing pkg-config (0.29-4+b1) ... Removing libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... Removing libdrm-amdgpu1:amd64 (2.4.74-1) ... Removing libdrm-nouveau2:amd64 (2.4.74-1) ... Removing libdrm-radeon1:amd64 (2.4.74-1) ... Removing libglew1.10:amd64 (1.10.0-3) ... Removing libdsdp-5.8gf (5.8-9.4) ... Removing libecpg6:amd64 (9.6.17-0+deb9u1) ... Removing libllvm3.5:amd64 (1:3.5-10) ... Removing prerex (6.5.3-1+b2) ... Removing libelk0 (3.99.8-4.1+b1) ... Removing libelf1:amd64 (0.168-1) ... Removing libelfg0:amd64 (0.8.13-5) ... Removing libmime-lite-perl (3.030-2) ... Removing libemail-date-format-perl (1.005-1) ... Removing perlprimer (1.2.3-1) ... Removing ncbi-entrez-direct (6.10.20170123+ds-1) ... Removing 'diversion of /usr/bin/efetch to /usr/bin/efetch.acedb by ncbi-entrez-direct' Removing 'diversion of /usr/share/man/man1/efetch.1.gz to /usr/share/man/man1/efetch.acedb.1.gz by ncbi-entrez-direct' Removing 'diversion of /usr/bin/einfo to /usr/bin/einfo.epub by ncbi-entrez-direct' Removing 'diversion of /usr/share/man/man1/einfo.1.gz to /usr/share/man/man1/einfo.epub.1.gz by ncbi-entrez-direct' Removing libenv-path-perl (0.19-1) ... Removing liberfa1:amd64 (1.3.0-2) ... Removing liberror-perl (0.17024-1) ... Removing libgphoto2-6:amd64 (2.5.12-1) ... Removing libgphoto2-port12:amd64 (2.5.12-1) ... Removing libexif12:amd64 (0.6.21-2+deb9u4) ... Removing treeviewx (0.5.1+20100823-4) ... Removing python3-biopython (1.68+dfsg-3) ... Removing python3-numpy (1:1.12.1-3) ... Removing python-all-dev (2.7.13-2) ... Removing python-pyrex (0.9.9-1) ... Removing python-dev (2.7.13-2) ... Removing python2.7-dev (2.7.13-2+deb9u3) ... Removing libpython-all-dev:amd64 (2.7.13-2) ... Removing libpython-dev:amd64 (2.7.13-2) ... Removing libpython2.7-dev:amd64 (2.7.13-2+deb9u3) ... Removing libexpat1-dev:amd64 (2.2.0-2+deb9u3) ... Removing libtype-tiny-perl (1.000005-1) ... Removing libsvg-graph-perl (0.02-2) ... Removing libstatistics-descriptive-perl (3.0612-1) ... Removing libjlapack-java (0.8~dfsg-3) ... Removing libf2j-java (0.8.1+dfsg-2) ... Removing zalign (0.9.1-2+b3) ... Removing ray (2.3.1-4+b1) ... Removing libfakeroot:amd64 (1.21-3.1) ... Removing libfann2:amd64 (2.2.0+ds-3) ... Removing libfastahack0 (0.0+20160702-1+b1) ... Removing libfastutil-java (7.0.13-1) ... Removing libfcgi-perl (0.78-2) ... Removing libffindex0 (0.9.9.7-3) ... Removing relion-bin (1.4+dfsg-2+b2) ... Removing librelion-1.4-1:amd64 (1.4+dfsg-2+b2) ... Removing libgromacs2 (2016.1-2) ... Removing libfftw3-single3:amd64 (3.3.5-3) ... Removing libfile-mimeinfo-perl (0.27-1) ... Removing libfile-desktopentry-perl (0.22-1) ... Removing libfile-basedir-perl (0.07-1) ... Removing libfile-chdir-perl (0.1008-1) ... Removing libfile-copy-link-perl (0.140-2) ... Removing update-inetd (4.44) ... Removing libfile-copy-recursive-perl (0.38-1) ... Removing libfile-fcntllock-perl (0.22-3+b2) ... Removing libfile-find-rule-perl (0.34-1) ... Removing libfile-grep-perl (0.02-1) ... Removing libfile-homedir-perl (1.00-1) ... Removing libfile-slurp-perl (9999.19-6) ... Removing libtree-dagnode-perl (1.29-1) ... Removing libfile-slurp-tiny-perl (0.003-1) ... Removing libfile-slurper-perl (0.009-1) ... Removing libfile-which-perl (1.21-1) ... Removing libfindbin-libs-perl (2.150-1) ... Removing libflite1:amd64 (2.0.0-release-3+b1) ... Removing seaview (1:4.6.1.2-2) ... Removing libfltk-images1.3:amd64 (1.3.4-4) ... Removing libfltk1.3:amd64 (1.3.4-4) ... Removing libfml0 (0.1-2+b1) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing libfont-ttf-perl (1.06-1) ... Removing libfontbox-java (1:1.8.12-1) ... Removing xfonts-100dpi (1:1.0.4+nmu1) ... Removing xfonts-utils (1:7.7+4) ... Removing libxfont1:amd64 (1:1.5.2-4) ... Removing libfreecontact0v5:amd64 (1.0.21-5) ... Removing libfreehep-graphicsio-ps-java (2.1.1-2) ... Removing libfreehep-graphicsio-pdf-java (2.1.1+dfsg-2) ... Removing tklib (0.6-3) ... Removing staden-common (2.0.0+b11-2) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-3) ... Removing libfreezethaw-perl (0.5001-1) ... Removing libfribidi0:amd64 (0.19.7-1+deb9u1) ... Removing libftgl2:amd64 (2.1.3~rc5-4+nmu1.1) ... Removing libfuse2:amd64 (2.9.7-1+deb9u2) ... Removing rnahybrid (2.1.2-1+b1) ... Removing libg20 (0.72-6) ... Removing libgail-common:amd64 (2.24.31-2) ... Removing libgail18:amd64 (2.24.31-2) ... Removing libgd-graph-perl (1.48-2) ... Removing libgd-text-perl (0.86-9) ... Removing libgd-svg-perl (0.33-1) ... Removing libgd-perl (2.53-3) ... Removing toppred (1.10-4) ... Removing profphd (1.0.40-1) ... Removing sprai (0.9.9.22+dfsg-1) ... Removing libwmf0.2-7:amd64 (0.2.8.4-10.6) ... Removing libgenome-1.3-0v5:amd64 (1.3.1-9) ... Removing libgetopt-euclid-perl (0.4.5-2) ... Removing libgetopt-java (1.0.14+dfsg-3) ... Removing libgetopt-simple-perl (1.52-5) ... Removing libgettextpo-dev:amd64 (0.19.8.1-2+deb9u1) ... Removing libgettextpo0:amd64 (0.19.8.1-2+deb9u1) ... Removing libgoogle-glog0v5 (0.3.4-2) ... Removing libgflags2v5 (2.1.2-4) ... Removing libhdf5-8:amd64 (1.8.13+docs-15+deb8u1) ... Removing tm-align (20160521+dfsg-2) ... Removing libghemical5v5 (3.0.0-4.1+b3) ... Removing libghemical-data (3.0.0-4.1) ... Removing libgif4:amd64 (4.1.6-11+deb8u1) ... Removing libgkarrays1 (2.1.0+dfsg-1) ... Removing libglade2-0:amd64 (1:2.6.4-2) ... Removing mesa-utils (8.3.0-3) ... Removing libglew2.0:amd64 (2.0.0-3+b1) ... Removing wise (2.4.1-19) ... Removing sigma-align (1.1.3-4+b1) ... Removing libglib2.0-data (2.50.3-2+deb9u2) ... Removing python-pyglet (1.1.4.dfsg-3) ... Removing njplot (2.4-7) ... Removing ncbi-tools-x11 (6.1.20170106+dfsg1-0+deb9u1) ... Removing libvibrant6b:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Removing liboglappth2 (1.0.0-2) ... Removing libgtkglext1 (1.2.0-4) ... Removing libglu1-mesa:amd64 (9.0.0-2.1) ... Removing libgmp-dev:amd64 (2:6.1.2+dfsg-1) ... Removing libgmpxx4ldbl:amd64 (2:6.1.2+dfsg-1) ... Removing libgnumail-java (1.1.2-10) ... Removing libgnuinet-java (1.1.2-2) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing velvetoptimiser (2.2.5-5) ... Removing velvet (1.2.10+dfsg1-3+b1) ... Removing sumaclust (1.0.20-1+b1) ... Removing libgphoto2-l10n (2.5.12-1) ... Removing libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... Removing libgraph-readwrite-perl (2.09-1) ... Removing libgraph-perl (1:0.96-2) ... Removing libgraphics-colorobject-perl (0.5.0-7.1) ... Removing libgraphics-colornames-perl (2.11-7.1) ... Removing libpango1.0-0:amd64 (1.40.5-1) ... Removing libpangoxft-1.0-0:amd64 (1.40.5-1) ... Removing libgraphviz-perl (2.22-1) ... Removing libgsasl7 (1.8.0-8+b2) ... Removing r-cran-rcppgsl (0.3.2-2) ... Removing libgsl-dev (2.3+dfsg-1) ... Removing libmath-tamuanova-perl (1.0.2-2+b4) ... Removing libtamuanova-0.2 (0.2-4) ... Removing saint (2.5.0+dfsg-2+b1) ... Removing libpq5:amd64 (9.6.17-0+deb9u1) ... Removing pvm (3.4.6-1+b2) ... Removing openssh-client (1:7.4p1-10+deb9u7) ... Removing libgstreamer1.0-0:amd64 (1.10.4-1) ... Removing libgtextutils0v5:amd64 (0.7-4) ... Removing libgts-bin (0.7.6+darcs121130-4) ... Removing libguard-perl (1.023-1+b2) ... Removing libwacom-bin (0.22-1+b1) ... Removing libgusb2:amd64 (0.2.9-1+b1) ... Removing libgzstream0 (1.5+dfsg-2) ... Removing libhamcrest-java (1.3-6) ... Removing libhat-trie0:amd64 (0.0~git25f9e946-2) ... Removing libkdf5-2 (2.8.1+dfsg-2) ... Removing libheap-perl (0.80-3) ... Removing libhmsbeagle-java (2.1.2+20160831-5) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libhpdf-2.2.1 (2.2.1-1.1+b1) ... Removing libhsqldb-java (2.3.4-1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.13-1) ... Removing samtools (1.3.1-3) ... Removing rna-star (2.5.2b+dfsg-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libhttpcore-java (4.4.6-1) ... Removing mpqc (2.3.1-18+deb9u1) ... Removing libibatis-java (2.3.4.726-6) ... Removing libsm-dev:amd64 (2:1.2.2-1+b3) ... Removing libice-dev:amd64 (2:1.0.9-2) ... Removing libxm4:amd64 (2.3.4-13) ... Removing libicu52:amd64 (52.1-8+deb8u7) ... Removing python-rpy2 (2.8.5-1) ... Removing libieee1284-3:amd64 (0.2.11-13) ... Removing libopenexr22:amd64 (2.2.0-11+b1) ... Removing libilmbase12:amd64 (2.2.0-12) ... Removing libopenexr6:amd64 (1.6.1-8) ... Removing libilmbase6:amd64 (1.0.1-6.1) ... Removing libimport-into-perl (1.002005-1) ... Removing libindirect-perl (0.37-1+b1) ... Removing libsc7v5 (2.3.1-18+deb9u1) ... Removing libint1 (1.1.6-2+b1) ... Removing libio-all-perl (0.86-2) ... Removing libipc-run-perl (0.94-1+deb9u1) ... Removing libio-pty-perl (1:1.08-1.1+b2) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libmailtools-perl (2.18-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libole-storage-lite-perl (0.19-1+deb9u1) ... Removing libio-stringy-perl (2.111-2) ... Removing libipc-shareable-perl (0.61-1) ... Removing libipc-sharelite-perl (0.17-4) ... Removing libipc-system-simple-perl (1.25-3) ... Removing libisc-export160 (1:9.10.3.dfsg.P4-12.3+deb9u6) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisl10:amd64 (0.12.2-2) ... Removing libisorelax-java (20041111-9) ... Removing libitext1-java (1.4-6) ... Removing libitext5-java (5.5.6-2) ... Removing libjaba-client-java (0+dfsg-1) ... Removing libjam-java (0.1.20140824-2) ... Removing libjargs-java (1.0.0-4) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libjava-xmlbuilder-java (0.4-2) ... Removing libxom-java (1.2.10-1) ... Removing libjdom1-java (1.1.3-1) ... Removing libjaxen-java (1.1.6-1+deb9u1) ... Removing libxalan2-java (2.7.1-9) ... Removing libjaxp1.3-java (1.3.05-2) ... Removing libpoppler-qt4-4:amd64 (0.48.0-2+deb9u2) ... Removing libjbzip2-java (0.9.1-3) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjcommon-java (1.0.23-1) ... Removing libjebl2-java (0.1+20140614-1) ... Removing libjellyfish-2.0-2 (2.2.6-1+b1) ... Removing libjemalloc1 (3.6.0-9.1) ... Removing libjgoodies-forms-java (1.9.0-3) ... Removing libjgoodies-common-java (1.8.1-2) ... Removing libjline-java (1.0-2) ... Removing libjpeg-dev (1:1.5.1-2) ... Removing libv4l-0:amd64 (1.12.3-1) ... Removing libv4lconvert0:amd64 (1.12.3-1) ... Removing python3-pil:amd64 (4.0.0-4+deb9u1) ... Removing libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Removing r-cran-shinybs (0.61-1) ... Removing r-cran-scatterd3 (0.8.1+dfsg-1) ... Removing libjs-d3 (3.5.17-2) ... Removing metaphlan2 (2.6.0+ds-2) ... dpkg: warning: while removing metaphlan2, directory '/usr/share/metaphlan2/db_v20' not empty so not removed Removing python-biom-format (2.1.5+dfsg-7) ... Removing pyqi (0.3.2+dfsg-2) ... Removing sphinx-common (1.4.9-2) ... Removing libjs-modernizr (2.6.2+ds1-1) ... Removing libjs-mootools (1.4.5~debian1-2.1) ... Removing libjs-scriptaculous (1.9.0-2) ... Removing libjs-prototype (1.7.1-3) ... Removing pynast (1.2.2-2) ... Removing libjsch-java (0.1.54-1) ... Removing libjson-c2:amd64 (0.11-4) ... Removing libjson-perl (2.90-1) ... Removing libjsoncpp0 (0.6.0~rc2-3.1) ... Removing libjsoncpp1:amd64 (1.7.4-3) ... Removing libjsr305-java (0.1~+svn49-10) ... Removing libjswingreader-java (0.3-2) ... Removing libjxr-tools (1.1-6+b1) ... Removing libjxr0:amd64 (1.1-6+b1) ... Removing libjzlib-java (1.1.3-1) ... Removing libkyotocabinet16v5:amd64 (1.2.76-4.2+b1) ... Removing r-cran-seqinr (3.3-3-1) ... Removing r-bioc-edger (3.14.0+dfsg-1) ... Removing liblapacke (3.7.0-2) ... Removing python-imaging (4.0.0-4+deb9u1) ... Removing python-pil:amd64 (4.0.0-4+deb9u1) ... Removing liblexical-sealrequirehints-perl (0.010-1+b1) ... Removing liblist-allutils-perl (0.12-1) ... Removing liblist-someutils-perl (0.53-1) ... Removing liblist-utilsby-perl (0.10-1) ... Removing libllvm3.9:amd64 (1:3.9.1-9) ... Removing liblog-log4perl-perl (1.48-1+deb9u1) ... Removing libterm-ui-perl (0.46-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing liblog4cpp5v5 (1.1.1-3) ... Removing liblog4j1.2-java (1.2.17-7+deb9u1) ... Removing liblqr-1-0:amd64 (0.4.2-2+b2) ... Removing libltdl-dev:amd64 (2.4.6-2) ... Removing liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Removing liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Removing liblzma-dev:amd64 (5.2.2-1.2+b1) ... Removing liblzo2-2:amd64 (2.08-1.2+b2) ... Removing libmail-java (1.5.6-2) ... Removing libmail-sendmail-perl (0.79.16-2) ... Removing libmaloc1 (0.2-3.1) ... Removing libqt4-sql-mysql:amd64 (4:4.8.7+dfsg-11) ... Removing python-mysqldb (1.3.7-1.1) ... Removing libmariadbclient18:amd64 (10.1.45-0+deb9u1) ... Removing libmath-bezier-perl (0.01-2) ... Removing libmath-spline-perl (0.02-1) ... Removing libmath-derivative-perl (0.04-2) ... Removing libmath-random-isaac-perl (1.003-1) ... Removing libmath-random-isaac-xs-perl (1.004-2+b2) ... Removing libmath-random-mt-perl (1.17-1+b2) ... Removing libmath-round-perl (0.07-1) ... Removing libmath-vec-perl (1.01-3) ... Removing libmath-vecstat-perl (0.08-1) ... Removing libmatthew-debug-java (0.8-1) ... Removing libmbedtls-dev:amd64 (2.4.2-1+deb9u3) ... Removing libncbi-vdb2 (2.8.1+dfsg-2) ... Removing libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Removing libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Removing libmiglayout-java (4.2-3) ... Removing libmime-types-perl (2.13-1) ... Removing libminimap0 (0.2-3+b1) ... Removing libmldbm-perl (2.05-2) ... Removing libmnl0:amd64 (1.0.4-2) ... Removing libparams-validate-perl (1.26-1) ... Removing libpackage-deprecationmanager-perl (0.17-1) ... Removing libpackage-stash-perl (0.37-1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-load-conditional-perl (0.68-1) ... Removing libmodule-pluggable-perl (5.2-1) ... Removing libmodule-runtime-perl (0.014-2) ... Removing libmodule-signature-perl (0.81-1) ... Removing libmopac7-1gf (1.15-6+b1) ... Removing libmotif-common (2.3.4-13) ... Removing libmtj-java (0.9.14+dfsg-4) ... Removing libmuscle-3.7-1 (3.7+4565-2) ... Removing libmysql-java (5.1.49-0+deb9u1) ... Removing libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Removing libnaga-java (3.0+svn80-1) ... Removing libnanoxml2-java (2.2.3.dfsg-5) ... Removing libncbi-wvdb2 (2.8.1+dfsg-2) ... Removing readseq (1-11+b1) ... Removing ncbi-tools-bin (6.1.20170106+dfsg1-0+deb9u1) ... Removing libncbi6:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Removing ncl-tools (2.1.18+dfsg-2+b1) ... Removing libncl1 (2.1.18+dfsg-2+b1) ... Removing libncurses5-dev:amd64 (6.0+20161126-1+deb9u2) ... Removing libnet-dbus-perl (1.1.0-4+b1) ... Removing netpbm (2:10.0-15.3+b2) ... Removing libnetpbm10 (2:10.0-15.3+b2) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libngs-java (1.3.0-2) ... Removing libngs-sdk-dev (1.3.0-2) ... Removing libngs-sdk1 (1.3.0-2) ... Removing libnlopt0:amd64 (2.4.2+dfsg-2+b2) ... Removing libntlm0:amd64 (1.4-8) ... Removing libnucleotidelikelihoodcore0 (1.8.4+dfsg.1-1) ... Removing libnumber-compare-perl (0.03-1) ... Removing libstatistics-basic-perl (1.6611-1) ... Removing libnumber-format-perl (1.75-1) ... Removing libvorbisfile3:amd64 (1.3.5-4+deb9u2) ... Removing python-openbabel (2.3.2+dfsg-3) ... Removing libopenbabel4v5 (2.3.2+dfsg-3) ... Removing libopenjpeg5:amd64 (1:1.5.2-3) ... Removing libopus0:amd64 (1.2~alpha2-1) ... Removing liborc-0.4-0:amd64 (1:0.4.26-2) ... Removing liboro-java (2.0.8a-12) ... Removing libossp-uuid-perl (1.6.2-1.5+b4) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Removing libpackage-constants-perl (0.06-1) ... Removing libpackage-stash-xs-perl (0.28-3+b1) ... Removing libpadwalker-perl (2.2-2+b1) ... Removing libpal-java (1.5.1+dfsg-2) ... Removing libpangox-1.0-0:amd64 (0.0.2-5+b2) ... Removing libparams-classify-perl (0.013-6+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967013+dfsg-1) ... Removing libparse-yapp-perl (1.05-12) ... Removing libpath-tiny-perl (0.100-1) ... Removing pbbamtools (0.7.4+ds-1) ... Removing libpcre32-3:amd64 (2:8.39-3) ... Removing libpcrecpp0v5:amd64 (2:8.39-3) ... Removing ssake (3.8.4-1) ... Removing libperl4-corelibs-perl (0.003-2+deb9u1) ... Removing libperlio-gzip-perl (0.19-1+b2) ... Removing libperlio-utf8-strict-perl (0.006-1+b2) ... Removing libpgtypes3:amd64 (9.6.17-0+deb9u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing perl-tk (1:804.033-1+b3) ... Removing libpod-latex-perl (0.61-2) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-markdown-perl (3.005000-1) ... Removing libpolkit-agent-1-0:amd64 (0.105-18+deb9u1) ... Removing libpolkit-backend-1-0:amd64 (0.105-18+deb9u1) ... Removing libpolkit-gobject-1-0:amd64 (0.105-18+deb9u1) ... Removing rsync (3.1.2-1+deb9u2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing libpopt0:amd64 (1.16-10+b2) ... Removing libpostgresql-jdbc-java (9.4.1212-1) ... Removing libpostscript-perl (0.06-2) ... Removing libprocessing-core-java (1.2.1-1) ... Removing libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Removing libprotobuf10:amd64 (3.0.0-9) ... Removing libprotobuf9:amd64 (2.6.1-1) ... Removing libpth20:amd64 (2.0.7-20+b2) ... Removing libxcb1-dev:amd64 (1.12-1) ... Removing libpthread-stubs0-dev:amd64 (0.3-4) ... Removing libpvm3:amd64 (3.4.6-1+b2) ... Removing python-support (1.0.15) ... Removing python-gdata (2.0.18+dfsg1-2) ... Removing python-xlwt (0.7.5+debian1-1) ... Removing pdb2pqr (2.1.1+dfsg-2) ... Removing libpython2.7:amd64 (2.7.13-2+deb9u3) ... Removing python-ipython (5.1.0-3) ... Removing python-simplegeneric (0.8.1-1) ... Removing python-mock (2.0.0-3) ... Removing python-pbr (1.10.0-1) ... Removing python-all (2.7.13-2) ... Removing python-statsmodels (0.8.0~rc1+git59-gef47cd9-5) ... Removing python-statsmodels-lib (0.8.0~rc1+git59-gef47cd9-5) ... Removing rambo-k (1.21+dfsg-1) ... Removing python-sklearn (0.18-5) ... Removing python-sklearn-lib (0.18-5) ... Removing libqes0 (0.2.7-1) ... Removing libqt4-designer:amd64 (4:4.8.7+dfsg-11) ... Removing libqt4-help:amd64 (4:4.8.7+dfsg-11) ... Removing libqt4-xmlpatterns:amd64 (4:4.8.7+dfsg-11) ... Removing libqtassistantclient4:amd64 (4.6.3-7+b1) ... Removing libqt4-network:amd64 (4:4.8.7+dfsg-11) ... Removing libqt4-opengl:amd64 (4:4.8.7+dfsg-11) ... Removing libqt4-scripttools:amd64 (4:4.8.7+dfsg-11) ... Removing libqt4-script:amd64 (4:4.8.7+dfsg-11) ... Removing libqt4-sql:amd64 (4:4.8.7+dfsg-11) ... Removing libqt4-test:amd64 (4:4.8.7+dfsg-11) ... Removing qdbus (4:4.8.7+dfsg-11) ... Removing populations (1.2.33+svn0120106-2.1+b1) ... Removing r-cran-vegan (2.4-2-1) ... Removing librdp-taxonomy-tree-java (1.2.0-1) ... Removing libreadline-dev:amd64 (7.0-3) ... Removing libreadline5:amd64 (5.2+dfsg-3+b1) ... Removing libreadonly-perl (2.050-1) ... Removing libregexp-common-perl (2016060801-1) ... Removing libregexp-java (1.5-3) ... Removing librelaxng-datatype-java (1.0+ds1-3) ... Removing librg-exception-perl (1.0.3-2) ... Removing librg-utils-perl (1.0.43-4) ... Removing librhino-java (1.7.7.1-1) ... Removing libsam-java (1.113-1) ... Removing libsane-common (1.0.25-4.1) ... Removing libsane-extras:amd64 (1.0.22.4) ... Removing libsane-extras-common (1.0.22.4) ... Removing libsaxon-java (1:6.5.5-10) ... Removing libsc-data (2.3.1-18+deb9u1) ... Removing libxml-xpath-perl (1.40-1) ... Removing libspiffy-perl (0.41-1) ... Removing libscalar-list-utils-perl (1:1.47-1) ... Removing lksctp-tools (1.0.17+dfsg-1+b1) ... Removing libsctp1:amd64 (1.0.17+dfsg-1+b1) ... Removing libsdsl3:amd64 (2.0.3-4) ... Removing parallel (20161222-1) ... Removing 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Removing 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Removing sysstat (11.4.3-2) ... Removing libsensors4:amd64 (1:3.4.0-4) ... Removing libservlet2.5-java (6.0.45+dfsg-1~deb8u1) ... Removing libservlet3.1-java (8.5.54-0+deb9u1) ... Removing libset-intspan-perl (1.19-1) ... Removing libset-scalar-perl (1.29-2) ... Removing libsmithwaterman0 (0.0+20160702-1+b1) ... Removing libsnappy-java (1.1.2.6-1) ... Removing libsnappy-jni (1.1.2.6-1) ... Removing libsnappy1v5:amd64 (1.1.3-3) ... Removing snp-sites (2.3.2-1) ... Removing libsnp-sites1 (2.3.2-1) ... Removing libsort-naturally-perl (1.03-1) ... Removing tree-puzzle (5.2-8+b3) ... Removing libsprng2 (2.0a-10) ... Removing libsqlite0 (2.8.17-14) ... Removing squizz (0.99c+dfsg-1) ... Removing libsquizz (0.99c+dfsg-1) ... Removing libssw-java (1.1-1+b1) ... Removing ssw-align (1.1-1+b1) ... Removing libssw0:amd64 (1.1-1+b1) ... Removing staden-io-lib-utils (1.14.8-2) ... Removing libstaden-read11:amd64 (1.14.8-2) ... Removing libstrictures-perl (2.000003-1) ... Removing libstring-approx-perl (3.27-1+b4) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-identify-perl (0.12-2+b1) ... Removing libsub-name-perl (0.21-1) ... Removing libtest-warn-perl (0.32-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2600-1) ... Removing libsuitesparseconfig4:amd64 (1:4.5.4-1) ... Removing libsvg-perl (2.64-1) ... Removing libsvm3 (3.21+ds-1.1) ... Removing libswing-layout-java (1.0.4-4) ... Removing libsys-hostname-long-perl (1.5-1) ... Removing libtabixpp0:amd64 (1.0.0-2) ... Removing libtask-weaken-perl (1.04-1) ... Removing libtk8.5:amd64 (8.5.19-1+b1) ... Removing libtcl8.5:amd64 (8.5.19-2+b1) ... Removing tcllib (1.18-dfsg-3) ... Removing libtcmalloc-minimal4 (2.5-2.2) ... Removing libtdb1:amd64 (1.3.11-2) ... Removing libterm-readkey-perl (2.37-1) ... Removing libtest-deep-perl (1.126-1) ... Removing libtest-file-perl (1.442-1) ... Removing libtest-pod-perl (1.51-1) ... Removing libtest-simple-perl (1.302075-1) ... Removing libtext-csv-perl (1.33-2) ... Removing libtext-csv-xs-perl (1.26-1) ... Removing libtext-format-perl (0.60-1) ... Removing libtext-glob-perl (0.10-1) ... Removing libtext-soundex-perl (3.4-1+b4) ... Removing libtext-template-perl (1.46-1) ... Removing libtheora0:amd64 (1.1.1+dfsg.1-14+b1) ... Removing libtie-ixhash-perl (1.23-2) ... Removing libtinfo-dev:amd64 (6.0+20161126-1+deb9u2) ... Removing libtinyxml2.6.2v5:amd64 (2.6.2-4) ... Removing libtmglib3 (3.7.0-2) ... Removing libtre5:amd64 (0.8.0-6) ... Removing libtry-tiny-perl (0.28-1) ... Removing libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... Removing libtype-tiny-xs-perl (0.012-1+b2) ... Removing libunicode-map-perl (0.112-11+b3) ... Removing libunicode-utf8-perl (0.60-1+b3) ... Removing libunixsocket-java (0.8-1) ... Removing libunwind8 (1.1-4.1) ... Removing libxml-simple-perl (2.22-1) ... Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing mipe (1.1-5) ... Removing libxml-twig-perl (1:3.50-1) ... Removing libusb-1.0-0:amd64 (2:1.0.21-1) ... Removing libutempter0:amd64 (1.1.6-3) ... Removing libvariable-magic-perl (0.61-1) ... Removing libvcflib1 (1.0.0~rc1+dfsg1-3) ... Removing libvecmath-java (1.5.2-5) ... Removing libvisual-0.4-0:amd64 (0.4.0-10) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libvte-common (1:0.28.2-5) ... Removing libwcs5:amd64 (5.16-1) ... Removing libwebpmux1:amd64 (0.4.1-1.2+b2) ... Removing libwebpdemux1:amd64 (0.4.1-1.2+b2) ... Removing libwebp5:amd64 (0.4.1-1.2+b2) ... Removing libwebpmux2:amd64 (0.5.2-1) ... Removing libwebpdemux2:amd64 (0.5.2-1) ... Removing tcpd (7.6.q-26) ... Removing libwsdl4j-java (1.6.3-4) ... Removing xauth (1:1.0.9-1+b2) ... Removing r-cran-tcltk2 (1.2-11-1) ... Removing tk-table:amd64 (2.10-3) ... Removing libx11-doc (2:1.6.4-3+deb9u1) ... Removing libx11-protocol-perl (0.56-7) ... Removing libxau-dev:amd64 (1:1.0.8-1) ... Removing libxml-checker-perl (0.13-6) ... Removing libxml-dom-xpath-perl (0.14-2) ... Removing libxml-dom-perl (1.44-2) ... Removing libxml-sax-writer-perl (0.56-1) ... Removing libxml-filter-buffertext-perl (1.01-5) ... Removing libxml-libxslt-perl (1.95-1+b1) ... Removing libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-perl (0.08-2) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing sra-toolkit-libs0 (2.3.5-2+dfsg-1) ... Removing libxpp2-java (2.1.10-7) ... Removing libxpp3-java (1.1.4c-2) ... Removing python-openpyxl (2.3.0-3) ... Removing python-lxml (3.7.1-1) ... Removing python3-openpyxl (2.3.0-3) ... Removing python3-lxml (3.7.1-1) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libxtables12:amd64 (1.6.0+snapshot20161117-6) ... Removing libxz-java (1.6-1) ... Removing python-yaml (3.12-1) ... Removing libyaml-libyaml-perl (0.63-2) ... Removing libyaml-perl (1.21-1) ... Removing libyaml-tiny-perl (1.70-1) ... Removing libzeus-jscl-java (1.72-1) ... Removing libzstd1 (1.1.2-1) ... Removing r-cran-ritis (0.5.4-1) ... Removing r-cran-solrium (0.4.0-1) ... Removing r-cran-bold (0.4.0-1) ... Removing r-cran-xml2 (1.1.0-1) ... Removing r-cran-tidyr (0.6.1-1) ... Removing littler (0.3.1-1) ... Removing loki (2.4.7.4-6+b1) ... Removing lua-filesystem:amd64 (1.6.3-1) ... Removing lua-lpeg:amd64 (1.0.0-1) ... Removing lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Removing lynx-common (2.8.9dev11-1) ... Removing mafft (7.307-1) ... Removing mailutils-common (1:3.1.1-1) ... Removing manpages-dev (4.10-2) ... Removing maq (0.7.1-7) ... Removing mariadb-common (10.1.45-0+deb9u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing massxpert-data (3.6.1-1) ... Removing mcl (1:14-137-1+b1) ... Removing med-tasks (3.0.1) ... Removing melting (4.3.1+dfsg-2+b1) ... Removing menu (2.1.47+b1) ... Removing meryl (0~20150903+r2013-3) ... Removing metaphlan2-data (2.6.0+ds-2) ... Removing metastudent-data (2.0.1-2) ... Removing metastudent-data-2 (1.0.0-2) ... Removing wigeon (20101212+dfsg1-1) ... Removing microbiomeutil-data (20101212+dfsg1-1) ... Removing miniasm (0.2+dfsg-2+b1) ... Removing minimap (0.2-3+b1) ... Removing mlv-smile (1.47-4+b1) ... Removing muscle (1:3.8.31+dfsg-2) ... Removing mustang (3.2.3-1) ... Removing mysql-common (5.8+1.0.2) ... Removing nanopolish (0.5.0-1+b1) ... Removing proteinortho (5.15+dfsg-1) ... Removing ncbi-epcr (2.3.12-1-4) ... Removing ncbi-seg (0.0.20000620-3+b1) ... Removing ncoils (2002-4+b1) ... Removing norsnet (1.0.17-2) ... Removing norsp (1.0.6-2) ... Removing openms-common (1.11.1-5) ... Removing ssl-cert (1.0.39) ... Removing paraclu (9-1+b2) ... Removing parafly (0.0.2013.01.21-3+b1) ... Removing parsinsert (1.04-2) ... Removing pbbarcode (0.8.0-4) ... Removing pbgenomicconsensus (2.1.0-1) ... Removing pbh5tools (0.8.0+dfsg-5) ... Removing pbjelly (15.8.24+dfsg-2) ... Removing pbsim (1.0.3-2) ... Removing perl-doc (5.24.1-3+deb9u7) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing perm (0.4.0-2) ... Removing phipack (0.0.20160614-2) ... Removing phybin (0.3-1+b1) ... Removing phylip (1:3.696+dfsg-5) ... Removing phyutility (2.7.3-1) ... Removing piler (0~20140707-1+b1) ... Removing pinentry-curses (1.0.0-2) ... Removing pirs-profiles (2.0.2+dfsg-5.1) ... Removing placnet (1.03-2) ... Removing plast (2.3.1+dfsg-4) ... Removing plink (1.07-7) ... Removing poa (2.0+20060928-4+b1) ... Removing prank (0.0.150803-2) ... Removing texlive-latex-extra (2016.20170123-5) ... Removing preview-latex-style (11.90-1) ... Removing primer3 (2.3.7-3) ... Removing proalign (0.603-2) ... Removing probabel (0.4.5-3+b1) ... Removing probalign (1.4-5) ... Removing probcons (1.12-11) ... Removing proda (1.0-10) ... Removing prodigal (1:2.6.3-1+b1) ... Removing profbval (1.0.22-4) ... Removing profnet-bval (1.0.22-4) ... Removing profnet-chop (1.0.22-4) ... Removing profnet-con (1.0.22-4) ... Removing profnet-isis (1.0.22-4) ... Removing profnet-md (1.0.22-4) ... Removing profnet-norsnet (1.0.22-4) ... Removing profnet-prof (1.0.22-4) ... Removing profnet-snapfun (1.0.22-4) ... Removing profphd-net (1.0.22-4) ... Removing profphd-utils (1.0.10-3+b1) ... Removing proftmb (1.1.12-6+b1) ... Removing psmisc (22.21-2.1+b2) ... Removing publicsuffix (20190415.1030-0+deb9u1) ... Removing python-alabaster (0.7.8-1) ... Removing python-antlr (2.7.7+dfsg-7) ... Removing python-pbgenomicconsensus (2.1.0-1) ... Removing python-pbalign (0.3.0-1) ... Removing python-pbcommand (0.5.3-1) ... Removing python-avro (1.8.1+dfsg-1) ... Removing python-babel (2.3.4+dfsg.1-2) ... Removing python-babel-localedata (2.3.4+dfsg.1-2) ... Removing python-backports-shutil-get-terminal-size (1.0.0-3) ... Removing python-biopython (1.68+dfsg-3) ... Removing python-biopython-doc (1.68+dfsg-3) ... Removing python-bs4 (4.5.3-1) ... Removing python-cairo (1.8.8-2.2) ... Removing python-openssl (16.2.0-1) ... Removing python-cryptography (1.7.1-3+deb9u2) ... Removing python-cffi-backend (1.9.1-2) ... Removing python-requests (2.12.4-1) ... Removing python-chardet (2.3.0-2) ... Removing python-click (6.6-1) ... Removing python-cogent (1.9-9) ... Removing python-colorama (0.3.7-1) ... Removing python-configobj (5.0.6-2) ... Removing python-future (0.15.2-4) ... Removing python-configparser (3.3.0r2-2) ... Removing python-crypto (2.6.1-7) ... Removing python-pandas (0.19.2-5.1) ... Removing python-traitlets (4.3.1-1) ... Removing uc-echo (1.12-9+b1) ... Removing python-dendropy (4.2.0+dfsg-1) ... Removing python-egenix-mxdatetime (3.2.9-1) ... Removing python-egenix-mxtools (3.2.9-1) ... Removing python-enum34 (1.1.6-1) ... Removing python-funcsigs (1.0.2-3) ... Removing python-gmpy (1.17-3) ... Removing python-gobject-2 (2.28.6-13) ... Removing python-pbh5tools (0.8.0+dfsg-5) ... Removing python-pbcore (1.2.11+dfsg-1) ... Removing python-h5py (2.7.0-1) ... Removing python-html5lib (0.999999999-1) ... Removing python-htseq (0.6.1p1-4) ... Removing python-idna (2.2-1) ... Removing python-imagesize (0.7.1-1) ... Removing python-intervaltree-bio (1.0.1-1) ... Removing python-intervaltree (2.1.0-2) ... Removing python-ipaddress (1.0.17-1) ... Removing python-ipython-genutils (0.1.0-2) ... Removing python-iso8601 (0.1.11-1) ... Removing python-jdcal (1.0-1.2~deb9u1) ... Removing python-jinja2 (2.8-1) ... Removing python-joblib (0.10.3+git55-g660fe5d-1) ... Removing python-lmfit (0.9.5+dfsg-2) ... Removing python-mako (1.0.6+ds1-2) ... Removing python-markupsafe (0.23-3) ... Removing python-mpi4py (2.0.0-2.1+deb9u1) ... Removing python-sympy (1.0-3) ... Removing python-mpmath (0.19-3) ... Removing python-msgpack (0.4.8-1) ... Removing python-multipletau (0.1.7+ds-1) ... Removing python-networkx (1.11-2) ... Removing python-nose (1.3.7-2) ... Removing python-numexpr (2.6.1-4) ... Removing python-pandas-lib (0.19.2-5.1) ... Removing python-pickleshare (0.7.4-1) ... Removing python-pathlib2 (2.2.0+really2.1.0-1) ... Removing python-patsy (0.4.1+git34-ga5b54c2-1) ... Removing python-pbconsensuscore (1.0.2-2) ... Removing python-pbsuite-utils (15.8.24+dfsg-2) ... Removing python-pexpect (4.2.1-1) ... Removing python-setuptools (33.1.1-1) ... Removing python-pytest (3.0.6-1) ... Removing python-py (1.4.32-3) ... Removing python-pkg-resources (33.1.1-1) ... Removing python-ply (3.9-1) ... Removing python-prompt-toolkit (1.0.9-1) ... Removing python-ptyprocess (0.5.1-1) ... Removing python-pyasn1 (0.1.9-2) ... Removing python-pygments (2.2.0+dfsg-1) ... Removing python-pysam (0.10.0+ds-2) ... Removing python-pysqlite2 (2.7.0-1) ... Removing python-qcli (0.1.1-1) ... Removing python-reportlab (3.3.0-2+deb9u1) ... Removing python-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Removing python-roman (2.0.0-2) ... Removing python-simplejson (3.10.0-1) ... Removing python-singledispatch (3.4.0.3-2) ... Removing python-sip (4.18.1+dfsg-2) ... Removing python-urllib3 (1.19.1-1) ... Removing python-sortedcontainers (1.5.7-1) ... Removing python-sqlalchemy-ext (1.0.15+ds1-1) ... Removing python-sqlalchemy (1.0.15+ds1-1) ... Removing python-sympy-doc (1.0-3) ... Removing python-tables-data (3.3.0-5) ... Removing python-wcwidth (0.1.7+dfsg1-1) ... Removing python-webencodings (0.5-2) ... Removing python-xlrd (1.0.0-1) ... Removing python3-bs4 (4.5.3-1) ... Removing python3-screed (0.9-2) ... Removing python3-bz2file (0.98-1) ... Removing python3-chardet (2.3.0-2) ... Removing python3-networkx (1.11-2) ... Removing python3-decorator (4.0.11-1) ... Removing sumtrees (4.2.0+dfsg-1) ... Removing python3-dendropy (4.2.0+dfsg-1) ... Removing python3-jdcal (1.0-1.2~deb9u1) ... Removing python3-nose (1.3.7-2) ... Removing python3-pytest (3.0.6-1) ... Removing python3-py (1.4.32-3) ... Removing python3-pkg-resources (33.1.1-1) ... Removing python3-pysam (0.10.0+ds-2) ... Removing python3-reportlab (3.3.0-2+deb9u1) ... Removing python3-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Removing python3-webencodings (0.5-2) ... Removing qiime-data (1.8.0+dfsg-4) ... Removing qtchooser (63-g13a3d08-1) ... Removing qttranslations5-l10n (5.7.1~20161021-1) ... Removing r-base-html (3.3.3-1) ... Removing r-bioc-geneplotter (1.52.0-2) ... Removing r-bioc-genefilter (1.56.0-1) ... Removing r-bioc-annotate (1.52.1+dfsg-1) ... Removing r-bioc-ensembldb (1.6.2-1) ... Removing r-bioc-genomicfeatures (1.26.2-1) ... Removing r-bioc-annotationhub (2.6.4-1) ... Removing r-bioc-shortread (1.32.0-1+b1) ... Removing r-bioc-bsgenome (1.42.0-2) ... Removing r-bioc-biocinstaller (1.24.0-1) ... Removing r-bioc-biomart (2.30.0-1) ... Removing r-bioc-biomformat (1.2.0-1) ... Removing r-cran-pscbs (0.62.0-1) ... Removing r-bioc-dnacopy (1.48.0-1) ... Removing r-bioc-ebseq (1.14.0-1) ... Removing r-bioc-hilbertvis (1.32.0-1) ... Removing r-bioc-interactivedisplaybase (1.12.0-1) ... Removing r-bioc-limma (3.30.8+dfsg-1) ... Removing r-bioc-mergeomics (1.2.0-1) ... Removing r-bioc-qvalue (2.6.0-1) ... Removing r-cran-adegraphics (1.0-6-1) ... Removing r-cran-rotl (3.0.1-1) ... Removing r-cran-nmf (0.20.6-1) ... Removing r-cran-batchjobs (1.6-1) ... Removing r-cran-fail (1.3-1) ... Removing r-cran-bbmisc (1.10-1) ... Removing r-cran-checkmate (1.8.2-1) ... Removing r-cran-backports (1.0.5-1) ... Removing r-cran-sendmailr (1.2-1-1) ... Removing r-cran-bbmle (1.0.18-2) ... Removing r-cran-bio3d (2.3-1-1) ... Removing r-cran-rocr (1.0-7-2) ... Removing r-cran-blockmodeling (0.1.8-1) ... Removing r-cran-boot (1.3-18-2) ... Removing r-cran-brew (1.0-6-1) ... Removing r-cran-class (7.3-14-1) ... Removing r-cran-coda (0.19-1-1) ... Removing r-cran-rngtools (1.2.4-2) ... Removing r-cran-pkgmaker (0.22-1) ... Removing r-cran-future (1.2.0-1) ... Removing r-cran-globals (0.8.0-1) ... Removing r-cran-combinat (0.0-8-4) ... Removing r-cran-testthat (1.0.2-2) ... Removing r-cran-crayon (1.3.2-1) ... Removing r-cran-rredlist (0.2.0-1) ... Removing r-cran-rentrez (1.0.4-1) ... Removing r-cran-httr (1.2.1-1) ... Removing r-cran-curl (2.3-1) ... Removing r-cran-dplyr (0.5.0-1) ... Removing r-cran-deldir (0.1-12-1) ... Removing r-cran-r.cache (0.12.0-2) ... Removing r-cran-distory (1.4.2-1) ... Removing r-cran-domc (1.3.4-1) ... Removing r-cran-doparallel (1.0.10-3) ... Removing r-cran-ellipse (0.3-8-1) ... Removing r-cran-fastcluster (1.1.22-1) ... Removing r-cran-fastmatch (1.0-4-1) ... Removing r-cran-fields (8.10-1) ... Removing r-cran-foreach (1.4.3-1) ... Removing r-cran-foreign (0.8.67-1) ... Removing r-other-mott-happy.hbrem (2.4-1) ... Removing r-cran-g.data (2.4-1) ... Removing r-cran-genabel (1.8-0-1+b1) ... Removing r-cran-genabel.data (1.0.0-1) ... Removing r-cran-optparse (1.3.2-1) ... Removing r-cran-getopt (1.20.0-2) ... Removing r-cran-gmodels (2.16.2-2) ... Removing r-cran-googlevis (0.6.2-1) ... Removing r-cran-gridbase (0.4-7-2) ... Removing r-cran-htmlwidgets (0.8-1) ... Removing r-cran-hwriter (1.3.2-1) ... Removing r-cran-inline (0.3.14-1) ... Removing r-cran-iterators (1.0.8-1) ... Removing r-cran-zoo (1.7-14-1) ... Removing r-cran-mgcv (1.8-16-1) ... Removing r-cran-learnbayes (2.15-3) ... Removing r-cran-listenv (0.6.0-1) ... Removing r-cran-mapproj (1.2-4-1) ... Removing r-cran-maps (3.1.1-1) ... Removing r-cran-matrixstats (0.51.0-1) ... Removing r-cran-multicore (0.2-1) ... Removing r-cran-nnet (7.3-12-1) ... Removing r-cran-numderiv (2016.8-1-1) ... Removing r-cran-openssl (0.9.6-1) ... Removing r-cran-permute (0.9-4-1) ... Removing r-cran-reshape (0.8.6-1) ... Removing r-cran-praise (1.0.0-1) ... Removing r-cran-rncl (0.8.2-1) ... Removing r-cran-progress (1.1.2-1) ... Removing r-cran-prettyunits (1.0.2-1) ... Removing r-cran-proto (1.0.0-1) ... Removing r-cran-quadprog (1.5-5-2) ... Removing r-cran-r.utils (2.5.0-1) ... Removing r-cran-r.oo (1.21.0-1) ... Removing r-cran-r.methodss3 (1.7.1-1) ... Removing r-cran-randomforest (4.6-12-1) ... Removing r-cran-raster (2.5-8-1) ... Removing r-cran-readxl (0.1.1-1+deb9u2) ... Removing r-cran-registry (0.3-1) ... Removing r-cran-segmented (0.5-1.4-1) ... Removing r-cran-shape (1.4.2-1) ... Removing r-cran-sp (1:1.2-4-1) ... Removing r-cran-spam (1.4-0-1) ... Removing r-cran-spatial (7.3-11-1) ... Removing r-cran-uuid (0.1.2-8) ... Removing r-doc-html (3.3.3-1) ... Removing r-mathlib (3.3.3-1) ... Removing rate4site (3.0.0-4+b1) ... Removing raxml (8.2.9+dfsg-1+b1) ... Removing rdp-classifier-doc (2.10.2-1) ... Removing rename (0.20-4) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing repeatmasker-recon (1.08-3+b1) ... Removing rtax (0.984-5) ... Removing science-tasks (1.7) ... Removing scrm (1.7.2-1+b1) ... Removing scythe (0.994-4) ... Removing seqan-apps (2.3.1+dfsg-4) ... Removing seqprep (1.3.2-1) ... Removing seqtk (1.2-1) ... Removing xml-core (0.17) ... Removing sgml-base (1.29) ... Removing sibsim4 (0.20-2+b1) ... Removing sickle (1.33-1+b1) ... Removing sim4 (0.0.20121010-4) ... Removing sim4db (0~20150903+r2013-3) ... Removing snap (2013-11-29-6) ... Removing snap-aligner (1.0~beta.18+dfsg-1) ... Removing snpomatic (1.0-3+b1) ... Removing soapdenovo (1.05-3) ... Removing soapdenovo2 (240+dfsg1-2) ... Removing sortmerna (2.1-1+b1) ... Removing spaced (1.0.2+dfsg-1+b1) ... Removing sqlite3 (3.16.2-5+deb9u1) ... Removing subread (1.5.1+dfsg-4) ... Removing suitename (0.3.070628-1+b1) ... Removing sumatra (1.0.20-1+b1) ... Removing swarm (2.1.12+dfsg-1) ... Removing t-coffee (11.00.8cbe486-5) ... Removing tabix (1.3.2-2) ... Removing tantan (13-4) ... Removing texlive-pstricks-doc (2016.20170123-5) ... Removing tex-gyre (20160520-1) ... Removing texlive-extra-utils (2016.20170123-5) ... Removing texlive-font-utils (2016.20170123-5) ... Removing texlive-fonts-extra-doc (2016.20170123-5) ... Removing texlive-fonts-recommended (2016.20170123-5) ... Removing texlive-fonts-recommended-doc (2016.20170123-5) ... Removing texlive-generic-extra (2016.20170123-5) ... Removing texlive-generic-recommended (2016.20170123-5) ... Removing texlive-pictures (2016.20170123-5) ... Removing texlive-latex-recommended (2016.20170123-5) ... Removing texlive-latex-base-doc (2016.20170123-5) ... Removing texlive-latex-extra-doc (2016.20170123-5) ... Removing texlive-latex-recommended-doc (2016.20170123-5) ... Removing texlive-pictures-doc (2016.20170123-5) ... Removing tigr-glimmer (3.02b-1) ... Removing time (1.7-25.1+b1) ... Removing transtermhp (2.09-3+b1) ... Removing tree-puzzle-doc (5.2-8) ... Removing ttf-adf-accanthis (0.20090423-2) ... Removing ttf-adf-gillius (0.20090423-2) ... Removing ttf-adf-universalis (0.20090423-2) ... Removing varna (3-93+ds-1) ... Removing vcftools (0.1.14+dfsg-4+deb9u1) ... Removing vsearch (2.3.4-1) ... Removing wise-data (2.4.1-19) ... Removing xfonts-encodings (1:1.0.4-2) ... Removing x11proto-input-dev (2.3.2-1) ... Removing x11proto-kb-dev (1.0.7-1) ... Removing xbitmaps (1.1.1-2) ... Removing xdg-user-dirs (0.15-2+b1) ... Removing xsltproc (1.1.29-2.1+deb9u2) ... Removing xtrans-dev (1.3.5-1) ... Removing python-wxgtk3.0 (3.0.2.0+dfsg-4) ... Removing libwxgtk3.0-0v5:amd64 (3.0.2+dfsg-4) ... Removing ant (1.9.9-1+deb9u1) ... Removing bc (1.06.95-9+b3) ... Removing libhmsbeagle1v5 (2.1.2+20160831-5) ... Removing beignet-opencl-icd:amd64 (1.3.0-4) ... Removing jarwrapper (0.59) ... Removing binfmt-support (2.1.6-2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing g++ (4:6.3.0-4) ... Removing bioperl (1.7.1-2) ... Removing blasr (5.3+0-1) ... Removing blast2 (1:2.6.0-1) ... Removing bowtie (1.1.2-6) ... Removing bowtie2 (2.3.0-2) ... Removing default-jre (2:1.8-58+deb9u1) ... Removing openjdk-8-jre:amd64 (8u252-b09-1~deb9u1) ... Removing libcolt-free-java (1.2.0+dfsg-4) ... Removing libconcurrent-java (1.3.4-4) ... Removing default-jre-headless (2:1.8-58+deb9u1) ... Removing libruby2.3:amd64 (2.3.3-1+deb9u8) ... Removing rake (10.5.0-2+deb9u1) ... Removing gcc (4:6.3.0-4) ... Removing fastjar (2:0.98-6+b1) ... Removing libqt5gui5:amd64 (5.7.1+dfsg-3+deb9u2) ... Removing r-cran-shiny (1.0.0+dfsg-1) ... Removing fonts-font-awesome (4.7.0~dfsg-1) ... Removing texlive-latex-base (2016.20170123-5) ... Removing fonts-lmodern (2.004.5-3) ... Removing python-matplotlib (2.0.0+dfsg1-2) ... Removing python-matplotlib-data (2.0.0+dfsg1-2) ... Removing fonts-lyx (2.2.2-1) ... Removing r-cran-hmisc (4.0-2-1) ... Removing r-cran-viridis (0.3.4-1) ... Removing g++-6 (6.3.0-18+deb9u1) ... Removing ghostscript (9.26a~dfsg-0+deb9u6) ... Removing libgnustep-base1.24 (1.24.9-3.1+deb9u1) ... Removing gnustep-base-common (1.24.9-3.1+deb9u1) ... Removing gnustep-common (2.6.8-2.1) ... Removing graphviz (2.38.0-17) ... Removing imagemagick-6-common (8:6.9.7.4+dfsg-11+deb9u8) ... Removing java-wrappers (0.1.28) ... Removing libfreehep-graphicsio-tests-java (2.1.1+dfsg1-4) ... Removing libjas-plotter-java (2.2.6+dfsg1-3) ... Removing libpbseq (0~20161219-1) ... Removing libblasr:amd64 (0~20161219-1) ... Removing libpbihdf:amd64 (0~20161219-1) ... Removing libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.32-1) ... Removing libalgorithm-c3-perl (0.10-1) ... Removing libalgorithm-diff-perl (1.19.03-1) ... Removing libann0 (1.1.2+doc-6) ... Removing rdp-readseq (2.0.2-2) ... Removing libcommons-lang-java (2.6-6) ... Removing libcommons-logging-java (1.2-1) ... Removing libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libasound2:amd64 (1.1.3-5) ... Removing libasound2-data (1.1.3-5) ... Removing libpulse0:amd64 (10.0-1+deb9u1) ... Removing libasyncns0:amd64 (0.8-6) ... Removing libatk-wrapper-java-jni:amd64 (0.33.3-13+deb9u1) ... Removing libatk-wrapper-java (0.33.3-13+deb9u1) ... Removing r-cran-rpart (4.1-10-2) ... Removing r-cran-survival (2.40-1-1) ... Removing libtbb2:amd64 (4.3~20150611-2) ... Removing libqtgui4:amd64 (4:4.8.7+dfsg-11) ... Removing libaudio2:amd64 (1.9.4-5+b1) ... Removing libbio-perl-perl (1.7.1-2) ... Removing r-cran-ape (4.0-1) ... Removing libboost-filesystem1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-iostreams1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-system1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libbpp-core2v5:amd64 (2.2.0-3) ... Removing libxdmcp-dev:amd64 (1:1.1.2-3) ... Removing texlive-base (2016.20170123-5) ... Removing texlive-binaries (2016.20160513.41080.dfsg-2+deb9u1) ... Removing libgvpr2 (2.38.0-17) ... Removing libgvc6 (2.38.0-17) ... Removing libcgraph6 (2.38.0-17) ... Removing libcommons-cli-java (1.3.1-3) ... Removing libcommons-codec-java (1.10-1) ... Removing libcommons-io-java (2.5-1) ... Removing libgs9:amd64 (9.26a~dfsg-0+deb9u6) ... Removing libcupsimage2:amd64 (2.2.1-8+deb9u6) ... Removing r-bioc-rtracklayer (1.34.1-1) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.110-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libqt5network5:amd64 (5.7.1+dfsg-3+deb9u2) ... Removing libqt5dbus5:amd64 (5.7.1+dfsg-3+deb9u2) ... Removing libqtdbus4:amd64 (4:4.8.7+dfsg-11) ... Removing libqt5core5a:amd64 (5.7.1+dfsg-3+deb9u2) ... Removing libdouble-conversion1:amd64 (2.0.1-4) ... Removing libdrm-intel1:amd64 (2.4.74-1) ... Removing x11-utils (7.7+3+b1) ... Removing libgl1-mesa-glx:amd64 (13.0.6-1+b2) ... Removing libedit2:amd64 (3.1-20160903-3) ... Removing libinput10:amd64 (1.6.3-1) ... Removing libevdev2:amd64 (1.5.6+dfsg-1) ... Removing libwxbase3.0-0v5:amd64 (3.0.2+dfsg-4) ... Removing liblist-moreutils-perl (0.416-1+b1) ... Removing libexporter-tiny-perl (0.042-1) ... Removing libfftw3-double3:amd64 (3.3.5-3) ... Removing libsndfile1:amd64 (1.0.27-3) ... Removing libflac8:amd64 (1.3.2-1) ... Removing libfontenc1:amd64 (1:1.1.3-1+b2) ... Removing libfreehep-graphicsio-java (2.1.1-4) ... Removing libfreehep-export-java (2.1.1-3) ... Removing libfreehep-graphics2d-java (2.1.1-5) ... Removing libfreehep-io-java (2.0.2-5) ... Removing libfreehep-swing-java (2.0.3-4) ... Removing libfreehep-util-java (2.0.2-6) ... Removing tk (8.6.0+9) ... Removing tk8.6 (8.6.6-1+b1) ... Removing libobjc4:amd64 (6.3.0-18+deb9u1) ... Removing libgc1c2:amd64 (1:7.4.2-8) ... Removing libgd3:amd64 (2.2.4-2+deb9u5) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing libgif7:amd64 (5.1.4-0.4) ... Removing libglapi-mesa:amd64 (13.0.6-1+b2) ... Removing libharfbuzz-icu0:amd64 (1.4.2-1) ... Removing libgs9-common (9.26a~dfsg-0+deb9u6) ... Removing libgsl2:amd64 (2.3+dfsg-1) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libinput-bin (1.6.3-1) ... Removing libwacom2:amd64 (0.22-1+b1) ... Removing libgudev-1.0-0:amd64 (230-3) ... Removing libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Removing mpi-default-bin (1.8) ... Removing openmpi-bin (2.0.2-2) ... Removing libijs-0.35:amd64 (0.35-12) ... Removing libio-string-perl (1.08-3) ... Removing libpoppler64:amd64 (0.48.0-2+deb9u2) ... Removing libjbig2dec0:amd64 (0.13-4.1) ... Removing libjs-bootstrap (3.3.7+dfsg-2+deb9u2) ... Removing libjs-es5-shim (4.5.9-1) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-1) ... Removing libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Removing libjs-sphinxdoc (1.4.9-2) ... Removing libjs-jquery-datatables (1.10.13+dfsg-2) ... Removing libjs-jquery-tablesorter (11-3) ... Removing libjs-jquery-metadata (11-3) ... Removing libjs-jquery-ui (1.12.1+dfsg-4) ... Removing libjs-json (0~20160510-1) ... Removing libjs-underscore (1.8.3~dfsg-1) ... Removing libptexenc1:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Removing libkpathsea6:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Removing r-cran-ade4 (1.7-5-1) ... Removing libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Removing libmng1:amd64 (1.0.10+dfsg-3.1+b5) ... Removing libmtdev1:amd64 (1.1.5-1+b1) ... Removing libnb-org-openide-util-java (8.1+dfsg1-5) ... Removing libnb-org-openide-util-lookup-java (8.1+dfsg1-5) ... Removing libnotify4:amd64 (0.7.7-2) ... Removing libvorbisenc2:amd64 (1.3.5-4+deb9u2) ... Removing libopenjp2-7:amd64 (2.1.2-1.1+deb9u4) ... Removing libparams-util-perl (1.07-3+b1) ... Removing libpathplan4 (2.38.0-17) ... Removing libpbdata:amd64 (0~20161219-1) ... Removing libpbbam:amd64 (0.7.4+ds-1) ... Removing libpcre16-3:amd64 (2:8.39-3) ... Removing libpotrace0 (1.13-3) ... Removing python-wxversion (3.0.2.0+dfsg-4) ... Removing libqt4-xml:amd64 (4:4.8.7+dfsg-11) ... Removing libqtcore4:amd64 (4:4.8.7+dfsg-11) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libsub-install-perl (0.928-1) ... Removing libsynctex1:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Removing libtablelayout-java (20090826-3) ... Removing tcl (8.6.0+9) ... Removing tcl8.6 (8.6.6+dfsg-1+b1) ... Removing libtexlua52:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Removing libtexluajit2:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Removing libxml-parser-perl (2.44-2+b1) ... Removing libvorbis0a:amd64 (1.3.5-4+deb9u2) ... Removing libwacom-common (0.22-1) ... Removing libwebp6:amd64 (0.5.2-1) ... Removing libwrap0:amd64 (7.6.q-26) ... Removing libxcb-icccm4:amd64 (0.4.1-1) ... Removing libxcb-render-util0:amd64 (0.3.9-1) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxcb-glx0:amd64 (1.12-1) ... Removing libxcb-image0:amd64 (0.4.0-1+b2) ... Removing libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Removing libxcb-randr0:amd64 (1.12-1) ... Removing libxcb-shape0:amd64 (1.12-1) ... Removing libxcb-util0:amd64 (0.3.8-3+b2) ... Removing libxcb-xinerama0:amd64 (1.12-1) ... Removing libxkbcommon-x11-0:amd64 (0.7.1-2~deb9u1) ... Removing libxcb-xkb1:amd64 (1.12-1) ... Removing libxdot4 (2.38.0-17) ... Removing libxerces2-java (2.11.0-7) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Removing libxml-commons-external-java (1.4.01-2) ... Removing libxml-commons-resolver1.1-java (1.2-7) ... Removing libxmu6:amd64 (2:1.1.2-2) ... Removing libxmuu1:amd64 (2:1.1.2-2) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxslt1.1:amd64 (1.1.29-2.1+deb9u2) ... Removing libxv1:amd64 (2:1.0.11-1) ... Removing libyaml-0-2:amd64 (0.1.7-2) ... Removing libzzip-0-13:amd64 (0.13.62-3.2~deb9u1) ... Removing ncbi-blast+-legacy (2.6.0-1) ... Removing openmpi-common (2.0.2-2) ... Removing poppler-data (0.4.7-8) ... Removing python-cycler (0.10.0-1) ... Removing python-dateutil (2.5.3-2) ... Removing python-scipy (0.18.1-2) ... Removing python-decorator (4.0.11-1) ... Removing python-functools32 (3.2.3.2-3) ... Removing python-pyparsing (2.1.10+dfsg1-1) ... Removing python-six (1.10.0-3) ... Removing python-subprocess32 (3.2.7-2) ... Removing python-tz (2016.7-0.3) ... Removing qtcore4-l10n (4:4.8.7+dfsg-11) ... Removing r-bioc-annotationdbi (1.36.1-2) ... Removing r-bioc-genomicalignments (1.10.0-1+b1) ... Removing r-bioc-summarizedexperiment (1.4.0-2) ... Removing r-bioc-biobase (2.34.0-1) ... Removing r-bioc-rsamtools (1.26.1-2+b1) ... Removing r-bioc-biostrings (2.42.1-1) ... Removing r-bioc-genomicranges (1.26.2-1+b1) ... Removing r-bioc-biocparallel (1.8.1-1) ... Removing r-bioc-genomeinfodb (1.10.3-1) ... Removing r-cran-acepack (1.4.1-1) ... Removing r-cran-ggplot2 (2.2.1-2) ... Removing r-cran-tibble (1.2-1) ... Removing r-cran-assertthat (0.1-1) ... Removing r-cran-base64enc (0.1-3-1) ... Removing r-cran-gplots (3.0.1-2) ... Removing r-cran-catools (1.17.1-1+b1) ... Removing r-cran-chron (2.3-49-1) ... Removing r-cran-cluster (2.0.5-1) ... Removing r-cran-codetools (0.2-15-1) ... Removing r-cran-scales (0.4.1-1) ... Removing r-cran-munsell (0.4.3-1) ... Removing r-cran-colorspace (1.3-2-1) ... Removing r-cran-data.table (1.10.0-1) ... Removing r-cran-rsqlite (1.1-2-1) ... Removing r-cran-dbi (0.5-1-1) ... Removing r-cran-dichromat (2.0.0-3) ... Removing r-cran-formula (1.2-1-1) ... Removing r-cran-futile.logger (1.4.3-1) ... Removing r-cran-futile.options (1.0.0-2) ... Removing r-cran-gdata (2.17.0-1) ... Removing r-cran-gridextra (2.2.1-1) ... Removing r-cran-gtable (0.2.0-1) ... Removing r-cran-gtools (3.5.0-1) ... Removing r-cran-htmltable (1.7-2) ... Removing r-cran-htmltools (0.3.5-2) ... Removing r-cran-httpuv (1.3.3-3) ... Removing r-cran-jsonlite (1.2-1) ... Removing r-cran-kernsmooth (2.23-15-2) ... Removing r-cran-labeling (0.3-1) ... Removing r-cran-lambda.r (1.1.9-1) ... Removing r-cran-nlme (3.1.129-1) ... Removing r-cran-latticeextra (0.6-28-2) ... Removing r-cran-lazyeval (0.2.0-1) ... Removing r-cran-reshape2 (1.4.2-1) ... Removing r-cran-mass (7.3-45-1) ... Removing r-cran-memoise (1.0.0-1) ... Removing r-cran-plyr (1.8.4-1) ... Removing r-cran-r6 (2.2.0-2) ... Removing r-cran-rcolorbrewer (1.1-2-1) ... Removing r-cran-snow (1:0.4.2-1) ... Removing r-cran-sourcetools (0.1.5-1) ... Removing r-cran-xml (3.98-1.5-1) ... Removing r-cran-xtable (1:1.8-2-1) ... Removing ruby-did-you-mean (1.0.0-2) ... Removing ruby-minitest (5.9.0-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.1.7-2) ... Removing ruby-power-assert (0.3.0-1) ... Removing t1utils (1.39-2) ... Removing tex-common (6.06) ... Removing x11proto-core-dev (7.0.31-1) ... Removing xorg-sgml-doctools (1:1.11-1) ... Removing libgtk-3-0:amd64 (3.22.11-1) ... Removing libgtk2.0-0:amd64 (2.24.31-2) ... Removing adwaita-icon-theme (3.22.0-1+deb9u1) ... Removing rubygems-integration (1.11) ... Removing libgtk-3-common (3.22.11-1) ... Removing librest-0.7-0:amd64 (0.8.0-2) ... Removing libsoup-gnome2.4-1:amd64 (2.56.0-2+deb9u2) ... Removing libsoup2.4-1:amd64 (2.56.0-2+deb9u2) ... Removing glib-networking:amd64 (2.50.0-1+deb9u1) ... Removing gsettings-desktop-schemas (3.22.0-1) ... Removing dconf-gsettings-backend:amd64 (0.26.0-2+b1) ... Removing dconf-service (0.26.0-2+b1) ... Removing r-cran-knitr (1.15.1-1) ... Removing r-cran-markdown (0.7.7-1) ... Removing libjs-mathjax (2.7.0-2) ... Removing fonts-mathjax (2.7.0-2) ... Removing glib-networking-services (2.50.0-1+deb9u1) ... Removing glib-networking-common (2.50.0-1+deb9u1) ... Removing gtk-update-icon-cache (3.22.11-1) ... Removing hicolor-icon-theme (0.15-1) ... Removing junit (3.8.2-8) ... Removing libsz2:amd64 (0.3.2-1) ... Removing libaec0:amd64 (0.3.2-1) ... Removing libcommons-parent-java (39-3) ... Removing libapache-pom-java (10-2) ... Removing libatk-bridge2.0-0:amd64 (2.22.0-2) ... Removing libatk1.0-0:amd64 (2.22.0-1) ... Removing libatk1.0-data (2.22.0-1) ... Removing r-cran-matrix (1.2-7.1-1) ... Removing libatspi2.0-0:amd64 (2.22.0-6+deb9u1) ... Removing libcairo-gobject2:amd64 (1.14.8-1) ... Removing libcdt5 (2.38.0-17) ... Removing libcolord2:amd64 (1.3.3-2) ... Removing librsvg2-common:amd64 (2.40.16-1+b1) ... Removing librsvg2-2:amd64 (2.40.16-1+b1) ... Removing r-cran-rcurl (1.95-4.8-2) ... Removing libdconf1:amd64 (0.26.0-2+b1) ... Removing libwayland-egl1-mesa:amd64 (13.0.6-1+b2) ... Removing libegl1-mesa:amd64 (13.0.6-1+b2) ... Removing libepoxy0:amd64 (1.3.1-2) ... Removing libopenmpi2:amd64 (2.0.2-2) ... Removing libfabric1 (1.4.0-1) ... Removing libgbm1:amd64 (13.0.6-1+b2) ... Removing libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Removing libgdk-pixbuf2.0-common (2.36.5-2+deb9u2) ... Removing libgtk2.0-common (2.24.31-2) ... Removing libhts1:amd64 (1.3.2-2) ... Removing libhwloc-plugins (1.11.5-1) ... Removing libhwloc5:amd64 (1.11.5-1) ... Removing librdmacm1 (1.1.0-2) ... Removing libibverbs1 (1.2.1-2) ... Removing r-cran-highr (0.6-1) ... Removing libjs-highlight.js (8.2+ds-5) ... Removing libjs-jquery (3.1.1-2+deb9u1) ... Removing libjson-glib-1.0-0:amd64 (1.2.6-1) ... Removing libjson-glib-1.0-common (1.2.6-1) ... Removing libltdl7:amd64 (2.4.6-2) ... Removing libnl-route-3-200:amd64 (3.2.27-2) ... Removing libnl-3-200:amd64 (3.2.27-2) ... Removing libnuma1:amd64 (2.0.11-2.1) ... Removing libogg0:amd64 (1.3.2-1) ... Removing libpciaccess0:amd64 (0.13.4-1+b2) ... Removing libproxy1v5:amd64 (0.4.14-2) ... Removing libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Removing python-numpy (1:1.12.1-3) ... Removing libwayland-cursor0:amd64 (1.12.0-1+deb9u1) ... Removing libwayland-client0:amd64 (1.12.0-1+deb9u1) ... Removing libwayland-server0:amd64 (1.12.0-1+deb9u1) ... Removing libx11-xcb1:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb-dri2-0:amd64 (1.12-1) ... Removing libxcb-dri3-0:amd64 (1.12-1) ... Removing libxcb-present0:amd64 (1.12-1) ... Removing libxcb-sync1:amd64 (1.12-1) ... Removing libxcb-xfixes0:amd64 (1.12-1) ... Removing libxcomposite1:amd64 (1:0.4.4-2) ... Removing libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Removing libxdamage1:amd64 (1:1.1.4-2+b3) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxinerama1:amd64 (2:1.1.3-1+b3) ... Removing libxkbcommon0:amd64 (0.7.1-2~deb9u1) ... Removing shared-mime-info (1.8-1+deb9u1) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing libxshmfence1:amd64 (1.2-1+b2) ... Removing r-cran-rcpp (0.12.9-1) ... Removing ncbi-blast+ (2.6.0-1) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Removing ocl-icd-libopencl1:amd64 (2.2.11-1) ... Removing r-bioc-xvector (0.14.0-1+b1) ... Removing r-bioc-iranges (2.8.1-1+b1) ... Removing r-bioc-s4vectors (0.12.1-2+b1) ... Removing r-bioc-biocgenerics (0.20.0-1) ... Removing r-cran-bitops (1.0-6-1) ... Removing r-cran-digest (0.6.11-1) ... Removing r-cran-evaluate (0.10-1) ... Removing r-cran-lattice (0.20-34-1) ... Removing r-cran-littler (0.3.1-1) ... Removing r-cran-stringr (1.1.0-1) ... Removing r-cran-magrittr (1.5-3) ... Removing r-cran-mime (0.5-1) ... Removing r-cran-pkgkitten (0.1.4-1) ... Removing r-cran-stringi (1.1.2-1) ... Removing r-cran-yaml (2.1.14-1) ... Removing xkb-data (2.19-1+deb9u1) ... Removing r-base-core (3.3.3-1) ... Removing libcurl3:amd64 (7.52.1-5+deb9u10) ... Removing libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Removing libdrm2:amd64 (2.4.74-1) ... Removing libtk8.6:amd64 (8.6.6-1+b1) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libpsl5:amd64 (0.17.0-3) ... Removing libidn2-0:amd64 (0.16-1+deb9u1) ... Removing libtiff5:amd64 (4.0.8-2+deb9u5) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing liblapack3 (3.7.0-2) ... Removing libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Removing libpangocairo-1.0-0:amd64 (1.40.5-1) ... Removing libpaper-utils (1.1.24+nmu5) ... Removing libpaper1:amd64 (1.1.24+nmu5) ... Removing python (2.7.13-2) ... Removing libpython-stdlib:amd64 (2.7.13-2) ... Removing python2.7 (2.7.13-2+deb9u3) ... Removing libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Removing python-minimal (2.7.13-2) ... Removing python2.7-minimal (2.7.13-2+deb9u3) ... Removing libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Removing libsm6:amd64 (2:1.2.2-1+b3) ... Removing libssh2-1:amd64 (1.7.0-1+deb9u1) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing unzip (6.0-21+deb9u2) ... Removing xdg-utils (1.1.1-1+deb9u2) ... Removing zip (3.0-11+b1) ... Removing libblas3 (3.7.0-2) ... Removing libblas-common (3.7.0-2) ... Removing libcairo2:amd64 (1.14.8-1) ... Removing libxft2:amd64 (2.3.2-1+b2) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libpangoft2-1.0-0:amd64 (1.40.5-1) ... Removing libharfbuzz0b:amd64 (1.4.2-1) ... Removing libgraphite2-3:amd64 (1.3.10-1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libpixman-1-0:amd64 (0.34.0-1) ... Removing libxcb-render0:amd64 (1.12-1) ... Removing libxcb-shm0:amd64 (1.12-1) ... Removing libpango-1.0-0:amd64 (1.40.5-1) ... Removing fontconfig (2.11.0-6.7+b1) ... Removing libthai0:amd64 (0.1.26-1) ... Removing libdatrie1:amd64 (0.2.10-4+b1) ... Removing libthai-data (0.1.26-1) ... Removing tasksel-data (3.39) ... Removing dh-autoreconf (14) ... Removing debhelper (10.2.5) ... Removing dh-strip-nondeterminism (0.034-1) ... Removing automake (1:1.15-6) ... Removing autoconf (2.69-10) ... Removing autopoint (0.19.8.1-2+deb9u1) ... Removing libtool (2.4.6-2) ... Removing autotools-dev (20161112.1) ... Removing gcc-6 (6.3.0-18+deb9u1) ... Removing man-db (2.7.6.1-2) ... Removing bsdmainutils (9.0.12+nmu1) ... Removing dpkg-dev (1.18.25) ... Removing bzip2 (1.0.6-8.1) ... Removing cpp (4:6.3.0-4) ... Removing cpp-6 (6.3.0-18+deb9u1) ... Removing dh-python (2.20170125) ... Removing file (1:5.30-1+deb9u3) ... Removing po-debconf (1.0.20) ... Removing intltool-debian (0.35.0+20060710.4) ... Removing gettext (0.19.8.1-2+deb9u1) ... Removing gettext-base (0.19.8.1-2+deb9u1) ... Removing groff-base (1.22.3-9) ... Removing libfile-stripnondeterminism-perl (0.034-1) ... Removing libarchive-zip-perl (1.59-1+deb9u1) ... Removing libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libasan3:amd64 (6.3.0-18+deb9u1) ... Removing libatomic1:amd64 (6.3.0-18+deb9u1) ... Removing libc6-dev:amd64 (2.24-11+deb9u4) ... Removing libc-dev-bin (2.24-11+deb9u4) ... Removing libcc1-0:amd64 (6.3.0-18+deb9u1) ... Removing libcilkrts5:amd64 (6.3.0-18+deb9u1) ... Removing libcroco3:amd64 (0.6.11-3) ... Removing libdpkg-perl (1.18.25) ... Removing libwww-perl (6.15-1) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libhtml-tree-perl (5.03-2) ... Removing libhtml-parser-perl (3.72-3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libio-socket-ssl-perl (2.044-1) ... Removing libisl15:amd64 (0.18-1) ... Removing libitm1:amd64 (6.3.0-18+deb9u1) ... Removing liblsan0:amd64 (6.3.0-18+deb9u1) ... Removing libmagic1:amd64 (1:5.30-1+deb9u3) ... Removing libmagic-mgc (1:5.30-1+deb9u3) ... Removing libmpc3:amd64 (1.0.3-1+b2) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libmpx2:amd64 (6.3.0-18+deb9u1) ... Removing libnet-http-perl (6.12-1) ... Removing libnet-ssleay-perl (1.80-1) ... Removing libpipeline1:amd64 (1.4.1-2) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing m4 (1.4.18-1) ... Removing libsigsegv2:amd64 (2.10-5) ... Removing libtsan0:amd64 (6.3.0-18+deb9u1) ... Removing libubsan0:amd64 (6.3.0-18+deb9u1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libwww-robotrules-perl (6.01-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Removing linux-libc-dev:amd64 (4.9.228-1) ... Removing make (4.1-9.1) ... Removing netbase (5.4) ... Removing patch (2.7.5-1+deb9u2) ... Removing perl-openssl-defaults:amd64 (3) ... Removing tasksel (3.39) ... Removing xz-utils (5.2.2-1.2+b1) ... Removing binutils (2.28-5) ... Removing ca-certificates-java (20170929~deb9u3) ... Removing openjdk-8-jre-headless:amd64 (8u252-b09-1~deb9u1) ... Removing ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3 (3.5.3-1) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing java-common (0.58+deb9u1) ... Removing libcups2:amd64 (2.2.1-8+deb9u6) ... Removing libhttp-message-perl (6.11-1) ... Removing libencode-locale-perl (1.05-1) ... Removing python3.5 (3.5.3-1+deb9u1) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Removing libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Removing libhttp-date-perl (6.02-1) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libio-html-perl (1.001-1) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2) ... Removing libkrb5-3:amd64 (1.15-1+deb9u1) ... Removing libk5crypto3:amd64 (1.15-1+deb9u1) ... Removing libkrb5support0:amd64 (1.15-1+deb9u1) ... Removing libkeyutils1:amd64 (1.5.9-9) ... Removing liblcms2-2:amd64 (2.8-4+deb9u1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libpython3-stdlib:amd64 (3.5.3-1) ... Removing libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Removing libmpdec2:amd64 (2.4.2-1) ... Removing libnss3:amd64 (2:3.26.2-1.1+deb9u1) ... Removing libnspr4:amd64 (2:4.12-6) ... Removing libpcsclite1:amd64 (1.8.20-1) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing python3-minimal (3.5.3-1) ... Removing libtimedate-perl (2.3000-2+deb9u1) ... Removing liburi-perl (1.71-1) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing mime-support (3.60) ... Removing openssl (1.1.0l-1~deb9u1) ... Removing ttf-bitstream-vera (1.10-8) ... Removing ucf (3.0036) ... Removing x11-common (1:7.7+19) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing libavahi-client3:amd64 (0.6.32-2) ... Removing libavahi-common3:amd64 (0.6.32-2) ... Removing libavahi-common-data:amd64 (0.6.32-2) ... Removing libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Removing python3.5-minimal (3.5.3-1+deb9u1) ... Removing libexpat1:amd64 (2.2.0-2+deb9u3) ... Removing perl (5.24.1-3+deb9u7) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Removing libx11-data (2:1.6.4-3+deb9u1) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for udev (232-25+deb9u12) ... 40m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', 'remove', 'abacas', 'abyss', 'acedb-other', 'acedb-other-belvu', 'acedb-other-dotter', 'adapterremoval', 'adun-core', 'adun.app', 'adwaita-icon-theme', 'aegean', 'aevol', 'aglfn', 'alien-hunter', 'alter-sequence-alignment', 'altree', 'amap-align', 'ampliconnoise', 'andi', 'anfo', 'ant', 'ant-contrib', 'ant-optional', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'apbs', 'aragorn', 'arden', 'ariba', 'art-nextgen-simulation-tools', 'artemis', 'artfastqgenerator', 'aspell', 'aspell-en', 'astro-tasks', 'at-spi2-core', 'atac', 'augustus', 'augustus-data', 'autoconf', 'autodock', 'autodock-vina', 'autogrid', 'automake', 'autopoint', 'autotools-dev', 'axe-demultiplexer', 'ballview', 'bamtools', 'barrnap', 'bauble', 'bc', 'bcftools', 'beagle', 'beast-mcmc', 'beast2-mcmc', 'bedtools', 'beignet-opencl-icd:amd64', 'berkeley-express', 'binfmt-support', 'binutils', 'bio-eagle', 'bio-rainbow', 'biomaj', 'bioperl', 'bioperl-run', 'biosquid', 'blasr', 'blast2', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'boxshade', 'brig', 'bsdmainutils', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'ca-certificates', 'ca-certificates-java', 'cassiopee', 'cd-hit', 'cdbfasta', 'cdbs', 'cgview', 'chimeraslayer', 'circlator', 'circos', 'circos-tools', 'clearcut', 'clonalframe', 'clustalo', 'clustalw', 'clustalx', 'codonw', 'colord', 'colord-data', 'concavity', 'conservation-code', 'cpp', 'cpp-4.9', 'cpp-6', 'crac', 'critterding', 'cron', 'curl', 'cutadapt', 'cython', 'daligner', 'dascrubber', 'datamash', 'dawg', 'dazzdb', 'dbus', 'dbus-java-bin', 'dconf-gsettings-backend:amd64', 'dconf-service', 'debhelper', 'debichem-tasks', 'default-jre', 'default-jre-headless', 'default-mysql-client', 'dh-autoreconf', 'dh-python', 'dh-strip-nondeterminism', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dictionaries-common', 'dindel', 'discosnp', 'disulfinder', 'disulfinder-data', 'dmidecode', 'dnaclust', 'docutils-common', 'docutils-doc', 'dpkg-dev', 'dssp', 'dvipng', 'dwgsim', 'ea-utils', 'ecopcr', 'edtsurf', 'eigensoft', 'emacsen-common', 'embassy-domainatrix', 'embassy-domalign', 'embassy-domsearch', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'f2j', 'fakeroot', 'falcon', 'fastahack', 'fastaq', 'fastdnaml', 'fastjar', 'fastlink', 'fastml', 'fastqc', 'fastqtl', 'fasttree', 'fastx-toolkit', 'ffindex', 'figtree', 'file', 'filo', 'fitgcp', 'flexbar', 'fml-asm', 'fontconfig', 'fontconfig-config', 'fonts-cabin', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-comfortaa', 'fonts-croscore', 'fonts-crosextra-caladea', 'fonts-crosextra-carlito', 'fonts-dejavu', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid', 'fonts-droid-fallback', 'fonts-ebgaramond', 'fonts-ebgaramond-extra', 'fonts-font-awesome', 'fonts-freefont-otf', 'fonts-freefont-ttf', 'fonts-gfs-artemisia', 'fonts-gfs-complutum', 'fonts-gfs-didot', 'fonts-gfs-neohellenic', 'fonts-gfs-olga', 'fonts-gfs-solomos', 'fonts-inconsolata', 'fonts-junicode', 'fonts-lato', 'fonts-liberation', 'fonts-linuxlibertine', 'fonts-lmodern', 'fonts-lobster', 'fonts-lobstertwo', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-hinted', 'fonts-noto-mono', 'fonts-oflb-asana-math', 'fonts-roboto-hinted', 'fonts-sil-gentium', 'fonts-sil-gentium-basic', 'fonts-sil-gentiumplus', 'fonts-sil-gentiumplus-compact', 'fonts-stix', 'fonts-texgyre', 'fop', 'freecontact', 'freeglut3:amd64', 'fsa', 'fsm-lite', 'g++-', 'g++-4.9', 'g++-6', 'gamgi', 'garli', 'garlic', 'gasic', 'gawk', 'gbrowse', 'gcc', 'gcc-4.9', 'gcc-6', 'gdpc', 'genometools', 'genometools-common', 'gentle', 'gettext', 'gettext-base', 'gff2aplot', 'gff2ps', 'gfortran', 'gfortran-4.9', 'gfortran-6', 'ghemical', 'ghostscript', 'giira', 'glam2', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'glpk-utils', 'gnupg', 'gnupg-agent', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gnustep-back-common', 'gnustep-back0.25', 'gnustep-back0.25-cairo', 'gnustep-base-common', 'gnustep-base-runtime', 'gnustep-common', 'gnustep-dl2-postgresql-adaptor', 'gnustep-gui-common', 'gnustep-gui-runtime', 'graphlan', 'graphviz', 'grinder', 'groff-base', 'gromacs', 'gromacs-data', 'gsettings-desktop-schemas', 'gsfonts', 'gstreamer1.0-plugins-base:amd64', 'gtk-update-icon-cache', 'gubbins', 'guile-2.0-libs:amd64', 'gwama', 'harvest-tools', 'hdf5-tools', 'hhsuite', 'hhsuite-data', 'hicolor-icon-theme', 'hilive', 'hisat2', 'hmmer', 'hmmer2', 'hyphy-common', 'hyphy-mpi', 'hyphygui', 'icc-profiles-free', 'icedtea-netx-common', 'icu-devtools', 'idba', 'ifupdown', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'imagemagick-common', 'indelible', 'infernal', 'intltool-debian', 'ipig', 'iproute2', 'ipython', 'iqtree', 'isc-dhcp-client', 'isc-dhcp-common', 'iso-codes', 'isympy', 'isympy-common', 'iva', 'jaligner', 'jalview', 'jarwrapper', 'java-common', 'java-wrappers', 'javahelp2', 'javascript-common', 'jellyfish', 'jemboss', 'jmodeltest', 'jmol', 'jmol-applet', 'junit', 'junit4', 'kalign', 'khmer:amd64', 'khmer-common', 'kineticstools', 'kineticstools-data', 'king', 'king-probe', 'kissplice', 'kmc', 'kmer', 'kraken', 'krb5-locales', 'ksh', 'lambda-align', 'laptop-detect', 'last-align', 'leaff', 'lefse', 'libace-perl', 'libaec0:amd64', 'libai-fann-perl', 'libaio1:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libamd2:amd64', 'libamd2.3.1:amd64', 'libanfo0', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libao-common', 'libao4', 'libapache-dbi-perl', 'libapache-mime4j-java', 'libapache-pom-java', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libarchive-zip-perl', 'libarchive13:amd64', 'libargtable2-0', 'libarmadillo7', 'libarpack2', 'libarray-compare-perl', 'libarray-utils-perl', 'libart-2.0-2:amd64', 'libasan1:amd64', 'libasan3:amd64', 'libasm-java', 'libasound2:amd64', 'libasound2-data', 'libaspell15:amd64', 'libasprintf-dev:amd64', 'libasprintf0v5:amd64', 'libasync-interrupt-perl', 'libasyncns0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatlas3-base', 'libatm1:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libaudio2:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavalon-framework-java', 'libaxis-java', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libball1.4', 'libball1.4-data', 'libballview1.4', 'libbambamc0', 'libbamtools2.3.0', 'libbamtools2.4.0', 'libbareword-filehandles-perl', 'libbatik-java', 'libbcmail-java', 'libbcpkix-java', 'libbcprov-java', 'libbio-asn1-entrezgene-perl', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbiojava-java', 'libbiojava1.7-java', 'libbit-vector-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libblasr:amd64', 'libblosc1', 'libboost-atomic1.62.0:amd64', 'libboost-chrono1.55.0:amd64', 'libboost-chrono1.62.0:amd64', 'libboost-date-time1.55.0:amd64', 'libboost-date-time1.62.0:amd64', 'libboost-filesystem1.55.0:amd64', 'libboost-filesystem1.62.0:amd64', 'libboost-iostreams1.55.0:amd64', 'libboost-iostreams1.62.0:amd64', 'libboost-math1.55.0:amd64', 'libboost-math1.62.0:amd64', 'libboost-mpi1.55.0', 'libboost-mpi1.62.0', 'libboost-program-options1.55.0:amd64', 'libboost-program-options1.62.0:amd64', 'libboost-random1.55.0:amd64', 'libboost-random1.62.0:amd64', 'libboost-regex1.55.0:amd64', 'libboost-regex1.62.0:amd64', 'libboost-serialization1.55.0:amd64', 'libboost-serialization1.62.0:amd64', 'libboost-system1.55.0:amd64', 'libboost-system1.62.0:amd64', 'libboost-thread1.55.0:amd64', 'libboost-thread1.62.0:amd64', 'libboost-timer1.55.0:amd64', 'libboost-timer1.62.0:amd64', 'libbpp-core2v5:amd64', 'libbpp-phyl-omics1v5', 'libbpp-phyl9v5:amd64', 'libbpp-seq-omics1v5:amd64', 'libbpp-seq9v5:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbsf-java', 'libbytecode-java', 'libbytes-random-secure-perl', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaca0:amd64', 'libcache-cache-perl', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcanberra-gtk3-0:amd64', 'libcanberra-gtk3-module:amd64', 'libcanberra0:amd64', 'libcapnp-0.5.3', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcassie1', 'libcassie1v5', 'libcastor-core-java', 'libcastor-xml-java', 'libcbf0:amd64', 'libcc1-0:amd64', 'libcdparanoia0:amd64', 'libcdt5', 'libcfitsio2:amd64', 'libcfitsio5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libclass-method-modifiers-perl', 'libclass-tiny-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcloog-isl4:amd64', 'libcneartree5:amd64', 'libcofoja-java', 'libcolamd2:amd64', 'libcolamd2.8.0:amd64', 'libcolord2:amd64', 'libcolorhug2:amd64', 'libcolt-free-java', 'libcommon-sense-perl', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-configuration-java', 'libcommons-dbcp-java', 'libcommons-discovery-java', 'libcommons-httpclient-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-net-java', 'libcommons-net2-java', 'libcommons-parent-java', 'libcommons-pool-java', 'libconcurrent-java', 'libconfig-general-perl', 'libconfig-inifiles-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-changes-perl', 'libcpan-meta-perl', 'libcqrlib2:amd64', 'libcr0', 'libcroco3:amd64', 'libcrypt-random-seed-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcrypto++6', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3:amd64', 'libcurl3-gnutls:amd64', 'libcvector2:amd64', 'libdata-dumper-simple-perl', 'libdata-optlist-perl', 'libdata-perl-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdbus-java', 'libdconf1:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-overloadinfo-perl', 'libdevel-partialdump-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdirectfb-1.2-9:amd64', 'libdisorder0:amd64', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdns-export100', 'libdns-export162', 'libdom4j-java', 'libdouble-conversion1:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdsdp-5.8gf', 'libecpg6:amd64', 'libedit2:amd64', 'libegl1-mesa:amd64', 'libelf1:amd64', 'libelfg0:amd64', 'libelk0', 'libemail-date-format-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libepoxy0:amd64', 'liberfa1:amd64', 'liberror-perl', 'libev-perl', 'libeval-closure-perl', 'libevdev2:amd64', 'libexception-class-perl', 'libexif12:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libexporter-tiny-perl', 'libf2j-java', 'libfabric1', 'libfakeroot:amd64', 'libfann2:amd64', 'libfastahack0', 'libfastutil-java', 'libfcgi-perl', 'libffindex0', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfile-basedir-perl', 'libfile-chdir-perl', 'libfile-copy-link-perl', 'libfile-copy-recursive-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-homedir-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-slurper-perl', 'libfile-stripnondeterminism-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libflac8:amd64', 'libflite1:amd64', 'libfltk-images1.3:amd64', 'libfltk1.3:amd64', 'libfml0', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontbox-java', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfop-java', 'libfreecontact0', 'libfreecontact0v5:amd64', 'libfreehep-export-java', 'libfreehep-graphics2d-java', 'libfreehep-graphicsio-emf-java', 'libfreehep-graphicsio-java', 'libfreehep-graphicsio-pdf-java', 'libfreehep-graphicsio-ps-java', 'libfreehep-graphicsio-svg-java', 'libfreehep-graphicsio-swf-java', 'libfreehep-graphicsio-tests-java', 'libfreehep-io-java', 'libfreehep-swing-java', 'libfreehep-util-java', 'libfreehep-xml-java', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libftgl2:amd64', 'libfuse2:amd64', 'libg20', 'libgail-common:amd64', 'libgail18:amd64', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-4.9-dev:amd64', 'libgcc-6-dev:amd64', 'libgd-graph-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd-text-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgenome-1.3-0v5:amd64', 'libgenometools0', 'libgetopt-euclid-perl', 'libgetopt-java', 'libgetopt-long-descriptive-perl', 'libgetopt-simple-perl', 'libgettextpo-dev:amd64', 'libgettextpo0:amd64', 'libgflags2', 'libgflags2v5', 'libgfortran-4.9-dev:amd64', 'libgfortran-6-dev:amd64', 'libgfortran3:amd64', 'libghemical-data', 'libghemical5v5', 'libgif4:amd64', 'libgif7:amd64', 'libgkarrays1', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglade2-0:amd64', 'libglapi-mesa:amd64', 'libglew1.10:amd64', 'libglew2.0:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglpk-java', 'libglpk36:amd64', 'libglpk40:amd64', 'libglu1-mesa:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnuinet-java', 'libgnumail-java', 'libgnustep-base1.24', 'libgnustep-dl2-0d', 'libgnustep-gui0.24', 'libgnustep-gui0.25', 'libgnutls-deb0-28:amd64', 'libgo-perl', 'libgomp1:amd64', 'libgoogle-glog0', 'libgoogle-glog0v5', 'libgphoto2-6:amd64', 'libgphoto2-l10n', 'libgphoto2-port10:amd64', 'libgphoto2-port12:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgromacs2', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgsl-dev', 'libgsl0ldbl', 'libgsl2:amd64', 'libgssapi-krb5-2:amd64', 'libgstreamer-plugins-base1.0-0:amd64', 'libgstreamer1.0-0:amd64', 'libgtextutils0:amd64', 'libgtextutils0v5:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgtkglext1', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libguava-java', 'libgudev-1.0-0:amd64', 'libgusb2:amd64', 'libgvc6', 'libgvpr2', 'libgzstream0', 'libhamcrest-java', 'libharfbuzz-icu0:amd64', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhdf5-100:amd64', 'libhdf5-8:amd64', 'libhdf5-cpp-100:amd64', 'libheap-perl', 'libhmsbeagle-java', 'libhmsbeagle1', 'libhmsbeagle1v5', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhsqldb-java', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttpclient-java', 'libhttpcore-java', 'libhttpmime-java', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibatis-java', 'libibverbs1', 'libice-dev:amd64', 'libice6:amd64', 'libicu-dev', 'libicu52:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libieee1284-3:amd64', 'libijs-0.35:amd64', 'libilmbase12:amd64', 'libilmbase6:amd64', 'libimport-into-perl', 'libindirect-perl', 'libinput-bin', 'libinput10:amd64', 'libint1', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libirs-export91', 'libisc-export160', 'libisc-export95', 'libisccfg-export90', 'libisl10:amd64', 'libisl15:amd64', 'libisorelax-java', 'libitext-java', 'libitext1-java', 'libitext5-java', 'libitm1:amd64', 'libj2ssh-java', 'libjaba-client-java', 'libjam-java', 'libjargs-java', 'libjas-plotter-java', 'libjasper1:amd64', 'libjava-xmlbuilder-java', 'libjaxen-java', 'libjaxp1.3-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjcommon-java', 'libjdom1-java', 'libjebl2-java', 'libjellyfish-2.0-2', 'libjemalloc1', 'libjets3t-java', 'libjgoodies-common-java', 'libjgoodies-forms-java', 'libjlapack-java', 'libjline-java', 'libjmol-java', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-modernizr', 'libjs-mootools', 'libjs-prototype', 'libjs-scriptaculous', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjsch-java', 'libjson-c2:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjson-perl', 'libjson-xs-perl', 'libjsoncpp0', 'libjsoncpp1:amd64', 'libjsr305-java', 'libjswingreader-java', 'libjung-free-java', 'libjxr-tools', 'libjxr0:amd64', 'libjzlib-java', 'libk5crypto3:amd64', 'libkdf5-2', 'libkeyutils1:amd64', 'libkpathsea6:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libkyotocabinet16v5:amd64', 'liblapack-dev', 'liblapack3', 'liblapacke', 'liblcms2-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm3.5:amd64', 'libllvm3.9:amd64', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'liblog4cpp5', 'liblog4cpp5v5', 'liblog4j1.2-java', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-2:amd64', 'libmagickcore-6.q16-3:amd64', 'libmagickcore-6.q16-3-extra:amd64', 'libmagickwand-6.q16-2:amd64', 'libmagickwand-6.q16-3:amd64', 'libmail-java', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmaloc1', 'libmariadbclient18:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-random-isaac-perl', 'libmath-random-isaac-xs-perl', 'libmath-random-mt-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-tamuanova-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmatthew-debug-java', 'libmbedcrypto0:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedx509-0:amd64', 'libmems-1.6-1v5:amd64', 'libmiglayout-java', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminimap0', 'libmldbm-perl', 'libmng1:amd64', 'libmnl0:amd64', 'libmodule-build-perl', 'libmodule-implementation-perl', 'libmodule-load-conditional-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmoose-perl', 'libmoox-handlesvia-perl', 'libmopac7-1gf', 'libmotif-common', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpj-java', 'libmpx2:amd64', 'libmro-compat-perl', 'libmsv-java', 'libmtdev1:amd64', 'libmtj-java', 'libmultidimensional-perl', 'libmuscle-3.7-1', 'libmysql-java', 'libmysqlclient18:amd64', 'libnaga-java', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libnanoxml2-java', 'libnb-org-openide-util-java', 'libnb-org-openide-util-lookup-java', 'libncbi-vdb2', 'libncbi-wvdb2', 'libncbi6:amd64', 'libncl1', 'libncurses5-dev:amd64', 'libncursesw5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetlib-java', 'libnetpbm10', 'libnettle4:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnucleotidelikelihoodcore0', 'libnuma1:amd64', 'libnumber-compare-perl', 'libnumber-format-perl', 'libobjc4:amd64', 'libogg0:amd64', 'liboglappth2', 'libole-storage-lite-perl', 'libopenbabel4v5', 'libopenblas-base', 'libopenexr22:amd64', 'libopenexr6:amd64', 'libopenjp2-7:amd64', 'libopenjpeg5:amd64', 'libopenmpi1.6', 'libopenmpi2:amd64', 'libopus0:amd64', 'liborc-0.4-0:amd64', 'liboro-java', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-constants-perl', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpal-java', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpango1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpangox-1.0-0:amd64', 'libpangoxft-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparse-recdescent-perl', 'libparse-yapp-perl', 'libpath-tiny-perl', 'libpathplan4', 'libpbbam:amd64', 'libpbdata:amd64', 'libpbihdf:amd64', 'libpbseq', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libperformance0.5', 'libperl4-corelibs-perl', 'libperl5.24:amd64', 'libperlio-gzip-perl', 'libperlio-utf8-strict-perl', 'libpgtypes3:amd64', 'libpicard-java', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng12-dev:amd64', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpod-latex-perl', 'libpod-markdown-perl', 'libpod-readme-perl', 'libpolkit-agent-1-0:amd64', 'libpolkit-backend-1-0:amd64', 'libpolkit-gobject-1-0:amd64', 'libpoppler-qt4-4:amd64', 'libpoppler46:amd64', 'libpoppler64:amd64', 'libpopt0:amd64', 'libpostgresql-jdbc-java', 'libpostscript-perl', 'libpotrace0', 'libpq5:amd64', 'libprocessing-core-java', 'libprocps3:amd64', 'libprotobuf10:amd64', 'libprotobuf9:amd64', 'libproxy1:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libptexenc1:amd64', 'libpth20:amd64', 'libpthread-stubs0-dev:amd64', 'libpulse0:amd64', 'libpvm3:amd64', 'libpython-all-dev:amd64', 'libpython-dev:amd64', 'libpython-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-dev:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libqes0', 'libqt4-dbus:amd64', 'libqt4-declarative:amd64', 'libqt4-designer:amd64', 'libqt4-help:amd64', 'libqt4-network:amd64', 'libqt4-opengl:amd64', 'libqt4-script:amd64', 'libqt4-scripttools:amd64', 'libqt4-sql:amd64', 'libqt4-sql-mysql:amd64', 'libqt4-svg:amd64', 'libqt4-test:amd64', 'libqt4-xml:amd64', 'libqt4-xmlpatterns:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5svg5:amd64', 'libqt5widgets5:amd64', 'libqt5xml5:amd64', 'libqtassistantclient4:amd64', 'libqtcore4:amd64', 'libqtdbus4:amd64', 'libqtgui4:amd64', 'libqtwebkit4:amd64', 'libquadmath0:amd64', 'librdmacm1', 'librdp-taxonomy-tree-java', 'libreadline-dev:amd64', 'libreadline5:amd64', 'libreadonly-perl', 'libregexp-common-perl', 'libregexp-java', 'librelaxng-datatype-java', 'librelion-1.3-1:amd64', 'librelion-1.4-1:amd64', 'librest-0.7-0:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'librhino-java', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby2.1:amd64', 'libruby2.3:amd64', 'libsam-java', 'libsane:amd64', 'libsane-common', 'libsane-extras:amd64', 'libsane-extras-common', 'libsaxon-java', 'libsaxonb-java', 'libsaxonhe-java', 'libsc-data', 'libsc7v5', 'libscalar-list-utils-perl', 'libsctp1:amd64', 'libsdl1.2debian:amd64', 'libsdsl3:amd64', 'libsensors4:amd64', 'libservlet2.5-java', 'libservlet3.1-java', 'libset-intspan-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm-dev:amd64', 'libsm6:amd64', 'libsmithwaterman0', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsnp-sites1', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsprng2', 'libsqlclient1.7', 'libsqlite0', 'libsquizz', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libssw-java', 'libssw0:amd64', 'libstaden-read1', 'libstaden-read11:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstdc++-4.9-dev:amd64', 'libstdc++-6-dev:amd64', 'libsteptalk0', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-uplevel-perl', 'libsuitesparseconfig4:amd64', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsvm3', 'libswing-layout-java', 'libsynctex1:amd64', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtabixpp0:amd64', 'libtablelayout-java', 'libtamuanova-0.2', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.5:amd64', 'libtcl8.6:amd64', 'libtcmalloc-minimal4', 'libtdb1:amd64', 'libterm-readkey-perl', 'libterm-ui-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-pod-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtexlua52:amd64', 'libtexluajit2:amd64', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-glob-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtheora0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtinyxml2.6.2:amd64', 'libtinyxml2.6.2v5:amd64', 'libtk8.5:amd64', 'libtk8.6:amd64', 'libtmglib3', 'libtool', 'libtre5:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libubsan0:amd64', 'libunicode-map-perl', 'libunicode-utf8-perl', 'libunistring0:amd64', 'libunixsocket-java', 'libunwind8', 'liburi-perl', 'libusb-1.0-0:amd64', 'libutempter0:amd64', 'libv4l-0:amd64', 'libv4lconvert0:amd64', 'libvamsas-client-java', 'libvariable-magic-perl', 'libvcflib-tools', 'libvcflib1', 'libvecmath-java', 'libvibrant6b:amd64', 'libvisual-0.4-0:amd64', 'libvisual-0.4-plugins:amd64', 'libvm-ec2-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libvorbisfile3:amd64', 'libvpx1:amd64', 'libvte-common', 'libvte9', 'libwacom-bin', 'libwacom-common', 'libwacom2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwcs5:amd64', 'libwebp5:amd64', 'libwebp6:amd64', 'libwebpdemux1:amd64', 'libwebpdemux2:amd64', 'libwebpmux1:amd64', 'libwebpmux2:amd64', 'libwmf0.2-7:amd64', 'libwrap0:amd64', 'libwsdl4j-java', 'libwww-perl', 'libwww-robotrules-perl', 'libwxbase3.0-0:amd64', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-0:amd64', 'libwxgtk3.0-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-dev:amd64', 'libx11-doc', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxalan2-java', 'libxau-dev:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util0:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcb1-dev:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp-dev:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.1:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxfont1:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxm4:amd64', 'libxml-checker-perl', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlgraphics-commons-java', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxom-java', 'libxpm4:amd64', 'libxpp2-java', 'libxpp3-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt-dev:amd64', 'libxt6:amd64', 'libxtables10', 'libxtables12:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyaml-tiny-perl', 'libzeep3.0', 'libzeep3.0v5', 'libzeus-jscl-java', 'libzstd1', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lksctp-tools', 'lmodern', 'logol-bin', 'loki', 'ltrsift', 'lua-filesystem:amd64', 'lua-lpeg:amd64', 'lua-md5:amd64', 'lynx', 'lynx-common', 'lynx-cur', 'm4', 'macs', 'macsyfinder', 'maffilter', 'mafft', 'mailutils', 'mailutils-common', 'make', 'man-db', 'manpages-dev', 'mapdamage', 'mapsembler2', 'maq', 'maqview', 'mariadb-client-10.1', 'mariadb-client-core-10.1', 'mariadb-common', 'mash', 'massxpert', 'massxpert-data', 'mauve-aligner', 'mcl', 'med-bio', 'med-config', 'med-tasks', 'melting', 'menu', 'meryl', 'mesa-utils', 'metaphlan2', 'metaphlan2-data', 'metastudent', 'metastudent-data', 'metastudent-data-2', 'mhap', 'microbegps', 'microbiomeutil', 'microbiomeutil-data', 'mime-support', 'minia', 'miniasm', 'minimap', 'mipe', 'mira-assembler', 'mira-rfam-12s-rrna', 'mknfonts.tool', 'mlv-smile', 'mothur', 'mpi-default-bin', 'mpqc', 'mrbayes', 'mrs', 'mummer', 'murasaki', 'murasaki-common', 'muscle', 'mustang', 'mysql-client', 'mysql-common', 'nanopolish', 'nast-ier', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-entrez-direct', 'ncbi-epcr', 'ncbi-seg', 'ncbi-tools-bin', 'ncbi-tools-x11', 'ncl-tools', 'ncoils', 'neobio', 'netbase', 'netpbm', 'njplot', 'norsnet', 'norsp', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'openjdk-7-jre-headless:amd64', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openms-common', 'openssh-client', 'openssl', 'paraclu', 'parafly', 'parallel', 'parsinsert', 'parsnp', 'patch', 'pbalign', 'pbbamtools', 'pbbarcode', 'pbdagcon', 'pbgenomicconsensus', 'pbh5tools', 'pbhoney', 'pbjelly', 'pbsim', 'pbsuite', 'pdb2pqr', 'perl', 'perl-doc', 'perl-modules', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'perl-tk', 'perlprimer', 'perm', 'phipack', 'phybin', 'phylip', 'phyml', 'physamp', 'phyutility', 'picard-tools', 'piler', 'pinentry-curses', 'pirs', 'pirs-profiles', 'pkg-config', 'placnet', 'plasmidomics', 'plast', 'plink', 'plink1.9', 'plip', 'po-debconf', 'poa', 'policykit-1', 'poppler-data', 'populations', 'poretools', 'pp-popularity-contest', 'prank', 'predictnls', 'predictprotein', 'prerex', 'preview-latex-style', 'prime-phylo', 'primer3', 'proalign', 'probabel', 'probalign', 'probcons', 'proda', 'prodigal', 'profbval', 'profisis', 'profnet-bval', 'profnet-chop', 'profnet-con', 'profnet-isis', 'profnet-md', 'profnet-norsnet', 'profnet-prof', 'profnet-snapfun', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'progressivemauve', 'prosper', 'proteinortho', 'prottest', 'ps2eps', 'psmisc', 'publicsuffix', 'pvm', 'pycorrfit', 'pymol', 'pymol-data', 'pynast', 'pyqi', 'pyscanfcs', 'python', 'python-alabaster', 'python-all', 'python-all-dev', 'python-antlr', 'python-astropy', 'python-avro', 'python-babel', 'python-babel-localedata', 'python-backports-shutil-get-terminal-size', 'python-ball', 'python-ballview', 'python-biom-format', 'python-biopython', 'python-biopython-doc', 'python-bs4', 'python-cairo', 'python-cffi-backend', 'python-chardet', 'python-click', 'python-cogent', 'python-colorama', 'python-configobj', 'python-configparser', 'python-crypto', 'python-cryptography', 'python-cvxopt', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-dendropy', 'python-dev', 'python-docutils', 'python-egenix-mxdatetime', 'python-egenix-mxtools', 'python-enum34', 'python-funcsigs', 'python-functools32', 'python-future', 'python-gdata', 'python-glade2', 'python-gmpy', 'python-gobject-2', 'python-gtk2', 'python-h5py', 'python-html5lib', 'python-htseq', 'python-idna', 'python-imagesize', 'python-imaging', 'python-intervaltree', 'python-intervaltree-bio', 'python-ipaddress', 'python-ipython', 'python-ipython-genutils', 'python-iso8601', 'python-jdcal', 'python-jinja2', 'python-joblib', 'python-kineticstools', 'python-lmfit', 'python-lxml', 'python-mako', 'python-markupsafe', 'python-matplotlib', 'python-matplotlib-data', 'python-matplotlib-venn', 'python-minimal', 'python-mock', 'python-mpi4py', 'python-mpmath', 'python-msgpack', 'python-multipletau', 'python-mysqldb', 'python-networkx', 'python-nose', 'python-numexpr', 'python-numpy', 'python-openbabel', 'python-opengl', 'python-openpyxl', 'python-openssl', 'python-pandas', 'python-pandas-lib', 'python-pathlib2', 'python-patsy', 'python-pbalign', 'python-pbbanana', 'python-pbcommand', 'python-pbconsensuscore', 'python-pbcore', 'python-pbgenomicconsensus', 'python-pbh5tools', 'python-pbr', 'python-pbsuite-utils', 'python-pexpect', 'python-pickleshare', 'python-pil:amd64', 'python-pkg-resources', 'python-ply', 'python-pmw', 'python-prompt-toolkit', 'python-ptyprocess', 'python-py', 'python-pyasn1', 'python-pyfits', 'python-pyglet', 'python-pygments', 'python-pygraphviz', 'python-pyparsing', 'python-pyrex', 'python-pysam', 'python-pysqlite2', 'python-pytest', 'python-qcli', 'python-qt4', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-requests', 'python-roman', 'python-rpy2', 'python-ruffus', 'python-scipy', 'python-seaborn', 'python-setuptools', 'python-simplegeneric', 'python-simplejson', 'python-singledispatch', 'python-sip', 'python-six', 'python-sklearn', 'python-sklearn-lib', 'python-sortedcontainers', 'python-sphinx', 'python-sqlalchemy', 'python-sqlalchemy-ext', 'python-statsmodels', 'python-statsmodels-lib', 'python-subprocess32', 'python-support', 'python-sympy', 'python-sympy-doc', 'python-tables', 'python-tables-data', 'python-tables-lib', 'python-tk', 'python-traitlets', 'python-tz', 'python-urllib3', 'python-wcwidth', 'python-webencodings', 'python-wxgtk3.0', 'python-wxversion', 'python-xlrd', 'python-xlwt', 'python-yaml', 'python2.7', 'python2.7-dev', 'python2.7-minimal', 'python3', 'python3-biopython', 'python3-bs4', 'python3-bz2file', 'python3-chardet', 'python3-cutadapt', 'python3-decorator', 'python3-dendropy', 'python3-html5lib', 'python3-jdcal', 'python3-lxml', 'python3-minimal', 'python3-networkx', 'python3-nose', 'python3-numpy', 'python3-openpyxl', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-py', 'python3-pymummer', 'python3-pysam', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-screed', 'python3-six', 'python3-webencodings', 'python3-xopen', 'python3-yaml', 'python3.4', 'python3.4-minimal', 'python3.5', 'python3.5-minimal', 'qdbus', 'qiime', 'qiime-data', 'qt-at-spi:amd64', 'qt5-gtk-platformtheme:amd64', 'qtchooser', 'qtcore4-l10n', 'qtltools', 'qttranslations5-l10n', 'r-base', 'r-base-core', 'r-base-dev', 'r-base-html', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biomformat', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-cummerbund', 'r-bioc-deseq2', 'r-bioc-dnacopy', 'r-bioc-ebseq', 'r-bioc-edger', 'r-bioc-ensembldb', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-hilbertvis', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-limma', 'r-bioc-mergeomics', 'r-bioc-metagenomeseq', 'r-bioc-multtest', 'r-bioc-phyloseq', 'r-bioc-qvalue', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-acepack', 'r-cran-ade4', 'r-cran-adegenet', 'r-cran-adegraphics', 'r-cran-adephylo', 'r-cran-ape', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bbmle', 'r-cran-bio3d', 'r-cran-bitops', 'r-cran-blockmodeling', 'r-cran-bold', 'r-cran-boot', 'r-cran-brew', 'r-cran-catools', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cluster', 'r-cran-coda', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-combinat', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-deldir', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-distory', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-ellipse', 'r-cran-evaluate', 'r-cran-fail', 'r-cran-fastcluster', 'r-cran-fastmatch', 'r-cran-fields', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-g.data', 'r-cran-gam', 'r-cran-gdata', 'r-cran-genabel', 'r-cran-genabel.data', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glmnet', 'r-cran-globals', 'r-cran-gmodels', 'r-cran-googlevis', 'r-cran-gplots', 'r-cran-gridbase', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-igraph', 'r-cran-inline', 'r-cran-irlba', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-learnbayes', 'r-cran-listenv', 'r-cran-littler', 'r-cran-luminescence', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-minpack.lm', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nmf', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-optparse', 'r-cran-permute', 'r-cran-phangorn', 'r-cran-phylobase', 'r-cran-pkgkitten', 'r-cran-pkgmaker', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-proto', 'r-cran-pscbs', 'r-cran-qtl', 'r-cran-quadprog', 'r-cran-r.cache', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-randomforest', 'r-cran-raster', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppgsl', 'r-cran-rcurl', 'r-cran-readxl', 'r-cran-registry', 'r-cran-rentrez', 'r-cran-reshape', 'r-cran-reshape2', 'r-cran-rgl', 'r-cran-ritis', 'r-cran-rlumshiny', 'r-cran-rncl', 'r-cran-rnexml', 'r-cran-rngtools', 'r-cran-rocr', 'r-cran-rotl', 'r-cran-rpart', 'r-cran-rredlist', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-scatterd3', 'r-cran-segmented', 'r-cran-sendmailr', 'r-cran-seqinr', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinybs', 'r-cran-snow', 'r-cran-solrium', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spam', 'r-cran-spatial', 'r-cran-spdep', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-taxize', 'r-cran-tcltk2', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-treescape', 'r-cran-uuid', 'r-cran-vegan', 'r-cran-viridis', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'r-doc-html', 'r-mathlib', 'r-other-mott-happy.hbrem', 'r-recommended', 'rake', 'rambo-k', 'rapmap', 'rasmol', 'raster3d', 'rate4site', 'raxml', 'ray', 'rdp-alignment', 'rdp-classifier', 'rdp-classifier-doc', 'rdp-readseq', 'readseq', 'reapr', 'relion-bin', 'rename', 'repeatmasker-recon', 'reprof', 'rhino', 'rna-star', 'rnahybrid', 'roary', 'rsem', 'rsync', 'rtax', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby2.1', 'ruby2.3', 'rubygems-integration', 'saint', 'salmon', 'samtools', 'sane-utils', 'science-config', 'science-tasks', 'scrm', 'scythe', 'seaview', 'seer', 'seqan-apps', 'seqprep', 'seqtk', 'sga', 'sgml-base', 'shared-mime-info', 'sibsim4', 'sickle', 'sigma-align', 'sim4', 'sim4db', 'smalt', 'smithwaterman', 'smrtanalysis', 'snap', 'snap-aligner', 'sniffles', 'snp-sites', 'snpomatic', 'soapdenovo', 'soapdenovo2', 'sortmerna', 'spaced', 'spades', 'sphinx-common', 'sphinx-doc', 'sphinx-rtd-theme-common', 'sprai', 'spread-phy', 'sqlite3', 'squizz', 'sra-toolkit', 'sra-toolkit-libs0', 'srst2', 'ssake', 'ssl-cert', 'sspace', 'ssw-align', 'stacks', 'staden', 'staden-common', 'staden-io-lib-utils', 'steptalk', 'subread', 'suitename', 'sumaclust', 'sumatra', 'sumtrees', 'surankco', 'swarm', 'swi-prolog', 'swi-prolog-nox', 'swi-prolog-x', 'sysstat', 't-coffee', 't1utils', 'tabix', 'tantan', 'tasksel', 'tasksel-data', 'tcl', 'tcl8.6', 'tcllib', 'tcpd', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-binaries', 'texlive-extra-utils', 'texlive-font-utils', 'texlive-fonts-extra', 'texlive-fonts-extra-doc', 'texlive-fonts-recommended', 'texlive-fonts-recommended-doc', 'texlive-generic-extra', 'texlive-generic-recommended', 'texlive-latex-base', 'texlive-latex-base-doc', 'texlive-latex-extra', 'texlive-latex-extra-doc', 'texlive-latex-recommended', 'texlive-latex-recommended-doc', 'texlive-math-extra', 'texlive-pictures', 'texlive-pictures-doc', 'texlive-pstricks', 'texlive-pstricks-doc', 'texlive-science', 'texlive-science-doc', 'theseus', 'tigr-glimmer', 'time', 'tipa', 'tk', 'tk-table:amd64', 'tk8.6', 'tk8.6-blt2.5', 'tklib', 'tm-align', 'tophat', 'topp', 'toppred', 'transdecoder', 'transrate-tools', 'transtermhp', 'tree-puzzle', 'tree-puzzle-doc', 'treeview', 'treeviewx', 'trimmomatic', 'trinityrnaseq', 'trinityrnaseq-examples', 'ttf-adf-accanthis', 'ttf-adf-gillius', 'ttf-adf-universalis', 'ttf-bitstream-vera', 'ttf-dejavu', 'ttf-dejavu-core', 'ttf-dejavu-extra', 'ttf-liberation', 'uc-echo', 'ucf', 'unzip', 'update-inetd', 'varna', 'vcftools', 'velvet', 'velvetoptimiser', 'vprerex', 'vsearch', 'wigeon', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'x11proto-core-dev', 'x11proto-input-dev', 'x11proto-kb-dev', 'xauth', 'xbitmaps', 'xdg-user-dirs', 'xdg-utils', 'xfonts-100dpi', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xorg-sgml-doctools', 'xsltproc', 'xterm', 'xtrans-dev', 'xz-utils', 'zalign', 'zip', 'zlib1g-dev:amd64', 'science-biology'] 40m37.2s INFO: Running scripts post_remove 40m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_remove_exceptions'] 40m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_remove_exceptions'] 40m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg', '--purge', 'abacas', 'abyss', 'acedb-other', 'acedb-other-belvu', 'acedb-other-dotter', 'adapterremoval', 'adun-core', 'adun.app', 'adwaita-icon-theme', 'aegean', 'aevol', 'aglfn', 'alien-hunter', 'alter-sequence-alignment', 'altree', 'amap-align', 'ampliconnoise', 'andi', 'anfo', 'ant', 'ant-contrib', 'ant-optional', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'apbs', 'aragorn', 'arden', 'ariba', 'art-nextgen-simulation-tools', 'artemis', 'artfastqgenerator', 'aspell', 'aspell-en', 'astro-tasks', 'at-spi2-core', 'atac', 'augustus', 'augustus-data', 'autoconf', 'autodock', 'autodock-vina', 'autogrid', 'automake', 'autopoint', 'autotools-dev', 'axe-demultiplexer', 'ballview', 'bamtools', 'barrnap', 'bauble', 'bc', 'bcftools', 'beagle', 'beast-mcmc', 'beast2-mcmc', 'bedtools', 'beignet-opencl-icd:amd64', 'berkeley-express', 'binfmt-support', 'binutils', 'bio-eagle', 'bio-rainbow', 'biomaj', 'bioperl', 'bioperl-run', 'biosquid', 'blasr', 'blast2', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'boxshade', 'brig', 'bsdmainutils', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'ca-certificates', 'ca-certificates-java', 'cassiopee', 'cd-hit', 'cdbfasta', 'cdbs', 'cgview', 'chimeraslayer', 'circlator', 'circos', 'circos-tools', 'clearcut', 'clonalframe', 'clustalo', 'clustalw', 'clustalx', 'codonw', 'colord', 'colord-data', 'concavity', 'conservation-code', 'cpp', 'cpp-4.9', 'cpp-6', 'crac', 'critterding', 'cron', 'curl', 'cutadapt', 'cython', 'daligner', 'dascrubber', 'datamash', 'dawg', 'dazzdb', 'dbus', 'dbus-java-bin', 'dconf-gsettings-backend:amd64', 'dconf-service', 'debhelper', 'debichem-tasks', 'default-jre', 'default-jre-headless', 'default-mysql-client', 'dh-autoreconf', 'dh-python', 'dh-strip-nondeterminism', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dictionaries-common', 'dindel', 'discosnp', 'disulfinder', 'disulfinder-data', 'dmidecode', 'dnaclust', 'docutils-common', 'docutils-doc', 'dpkg-dev', 'dssp', 'dvipng', 'dwgsim', 'ea-utils', 'ecopcr', 'edtsurf', 'eigensoft', 'emacsen-common', 'embassy-domainatrix', 'embassy-domalign', 'embassy-domsearch', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'f2j', 'fakeroot', 'falcon', 'fastahack', 'fastaq', 'fastdnaml', 'fastjar', 'fastlink', 'fastml', 'fastqc', 'fastqtl', 'fasttree', 'fastx-toolkit', 'ffindex', 'figtree', 'file', 'filo', 'fitgcp', 'flexbar', 'fml-asm', 'fontconfig', 'fontconfig-config', 'fonts-cabin', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-comfortaa', 'fonts-croscore', 'fonts-crosextra-caladea', 'fonts-crosextra-carlito', 'fonts-dejavu', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid', 'fonts-droid-fallback', 'fonts-ebgaramond', 'fonts-ebgaramond-extra', 'fonts-font-awesome', 'fonts-freefont-otf', 'fonts-freefont-ttf', 'fonts-gfs-artemisia', 'fonts-gfs-complutum', 'fonts-gfs-didot', 'fonts-gfs-neohellenic', 'fonts-gfs-olga', 'fonts-gfs-solomos', 'fonts-inconsolata', 'fonts-junicode', 'fonts-lato', 'fonts-liberation', 'fonts-linuxlibertine', 'fonts-lmodern', 'fonts-lobster', 'fonts-lobstertwo', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-hinted', 'fonts-noto-mono', 'fonts-oflb-asana-math', 'fonts-roboto-hinted', 'fonts-sil-gentium', 'fonts-sil-gentium-basic', 'fonts-sil-gentiumplus', 'fonts-sil-gentiumplus-compact', 'fonts-stix', 'fonts-texgyre', 'fop', 'freecontact', 'freeglut3:amd64', 'fsa', 'fsm-lite', 'g++', 'g++-4.9', 'g++-6', 'gamgi', 'garli', 'garlic', 'gasic', 'gawk', 'gbrowse', 'gcc', 'gcc-4.9', 'gcc-6', 'gdpc', 'genometools', 'genometools-common', 'gentle', 'gettext', 'gettext-base', 'gff2aplot', 'gff2ps', 'gfortran', 'gfortran-4.9', 'gfortran-6', 'ghemical', 'ghostscript', 'giira', 'glam2', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'glpk-utils', 'gnupg', 'gnupg-agent', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gnustep-back-common', 'gnustep-back0.25', 'gnustep-back0.25-cairo', 'gnustep-base-common', 'gnustep-base-runtime', 'gnustep-common', 'gnustep-dl2-postgresql-adaptor', 'gnustep-gui-common', 'gnustep-gui-runtime', 'graphlan', 'graphviz', 'grinder', 'groff-base', 'gromacs', 'gromacs-data', 'gsettings-desktop-schemas', 'gsfonts', 'gstreamer1.0-plugins-base:amd64', 'gtk-update-icon-cache', 'gubbins', 'guile-2.0-libs:amd64', 'gwama', 'harvest-tools', 'hdf5-tools', 'hhsuite', 'hhsuite-data', 'hicolor-icon-theme', 'hilive', 'hisat2', 'hmmer', 'hmmer2', 'hyphy-common', 'hyphy-mpi', 'hyphygui', 'icc-profiles-free', 'icedtea-netx-common', 'icu-devtools', 'idba', 'ifupdown', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'imagemagick-common', 'indelible', 'infernal', 'intltool-debian', 'ipig', 'iproute2', 'ipython', 'iqtree', 'isc-dhcp-client', 'isc-dhcp-common', 'iso-codes', 'isympy', 'isympy-common', 'iva', 'jaligner', 'jalview', 'jarwrapper', 'java-common', 'java-wrappers', 'javahelp2', 'javascript-common', 'jellyfish', 'jemboss', 'jmodeltest', 'jmol', 'jmol-applet', 'junit', 'junit4', 'kalign', 'khmer:amd64', 'khmer-common', 'kineticstools', 'kineticstools-data', 'king', 'king-probe', 'kissplice', 'kmc', 'kmer', 'kraken', 'krb5-locales', 'ksh', 'lambda-align', 'laptop-detect', 'last-align', 'leaff', 'lefse', 'libace-perl', 'libaec0:amd64', 'libai-fann-perl', 'libaio1:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libamd2:amd64', 'libamd2.3.1:amd64', 'libanfo0', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libao-common', 'libao4', 'libapache-dbi-perl', 'libapache-mime4j-java', 'libapache-pom-java', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libarchive-zip-perl', 'libarchive13:amd64', 'libargtable2-0', 'libarmadillo7', 'libarpack2', 'libarray-compare-perl', 'libarray-utils-perl', 'libart-2.0-2:amd64', 'libasan1:amd64', 'libasan3:amd64', 'libasm-java', 'libasound2:amd64', 'libasound2-data', 'libaspell15:amd64', 'libasprintf-dev:amd64', 'libasprintf0v5:amd64', 'libasync-interrupt-perl', 'libasyncns0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatlas3-base', 'libatm1:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libaudio2:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavalon-framework-java', 'libaxis-java', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libball1.4', 'libball1.4-data', 'libballview1.4', 'libbambamc0', 'libbamtools2.3.0', 'libbamtools2.4.0', 'libbareword-filehandles-perl', 'libbatik-java', 'libbcmail-java', 'libbcpkix-java', 'libbcprov-java', 'libbio-asn1-entrezgene-perl', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbiojava-java', 'libbiojava1.7-java', 'libbit-vector-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libblasr:amd64', 'libblosc1', 'libboost-atomic1.62.0:amd64', 'libboost-chrono1.55.0:amd64', 'libboost-chrono1.62.0:amd64', 'libboost-date-time1.55.0:amd64', 'libboost-date-time1.62.0:amd64', 'libboost-filesystem1.55.0:amd64', 'libboost-filesystem1.62.0:amd64', 'libboost-iostreams1.55.0:amd64', 'libboost-iostreams1.62.0:amd64', 'libboost-math1.55.0:amd64', 'libboost-math1.62.0:amd64', 'libboost-mpi1.55.0', 'libboost-mpi1.62.0', 'libboost-program-options1.55.0:amd64', 'libboost-program-options1.62.0:amd64', 'libboost-random1.55.0:amd64', 'libboost-random1.62.0:amd64', 'libboost-regex1.55.0:amd64', 'libboost-regex1.62.0:amd64', 'libboost-serialization1.55.0:amd64', 'libboost-serialization1.62.0:amd64', 'libboost-system1.55.0:amd64', 'libboost-system1.62.0:amd64', 'libboost-thread1.55.0:amd64', 'libboost-thread1.62.0:amd64', 'libboost-timer1.55.0:amd64', 'libboost-timer1.62.0:amd64', 'libbpp-core2v5:amd64', 'libbpp-phyl-omics1v5', 'libbpp-phyl9v5:amd64', 'libbpp-seq-omics1v5:amd64', 'libbpp-seq9v5:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbsf-java', 'libbytecode-java', 'libbytes-random-secure-perl', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaca0:amd64', 'libcache-cache-perl', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcanberra-gtk3-0:amd64', 'libcanberra-gtk3-module:amd64', 'libcanberra0:amd64', 'libcapnp-0.5.3', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcassie1', 'libcassie1v5', 'libcastor-core-java', 'libcastor-xml-java', 'libcbf0:amd64', 'libcc1-0:amd64', 'libcdparanoia0:amd64', 'libcdt5', 'libcfitsio2:amd64', 'libcfitsio5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libclass-method-modifiers-perl', 'libclass-tiny-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcloog-isl4:amd64', 'libcneartree5:amd64', 'libcofoja-java', 'libcolamd2:amd64', 'libcolamd2.8.0:amd64', 'libcolord2:amd64', 'libcolorhug2:amd64', 'libcolt-free-java', 'libcommon-sense-perl', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-configuration-java', 'libcommons-dbcp-java', 'libcommons-discovery-java', 'libcommons-httpclient-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-net-java', 'libcommons-net2-java', 'libcommons-parent-java', 'libcommons-pool-java', 'libconcurrent-java', 'libconfig-general-perl', 'libconfig-inifiles-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-changes-perl', 'libcpan-meta-perl', 'libcqrlib2:amd64', 'libcr0', 'libcroco3:amd64', 'libcrypt-random-seed-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcrypto++6', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3:amd64', 'libcurl3-gnutls:amd64', 'libcvector2:amd64', 'libdata-dumper-simple-perl', 'libdata-optlist-perl', 'libdata-perl-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdbus-java', 'libdconf1:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-overloadinfo-perl', 'libdevel-partialdump-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdirectfb-1.2-9:amd64', 'libdisorder0:amd64', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdns-export100', 'libdns-export162', 'libdom4j-java', 'libdouble-conversion1:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdsdp-5.8gf', 'libecpg6:amd64', 'libedit2:amd64', 'libegl1-mesa:amd64', 'libelf1:amd64', 'libelfg0:amd64', 'libelk0', 'libemail-date-format-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libepoxy0:amd64', 'liberfa1:amd64', 'liberror-perl', 'libev-perl', 'libeval-closure-perl', 'libevdev2:amd64', 'libexception-class-perl', 'libexif12:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libexporter-tiny-perl', 'libf2j-java', 'libfabric1', 'libfakeroot:amd64', 'libfann2:amd64', 'libfastahack0', 'libfastutil-java', 'libfcgi-perl', 'libffindex0', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfile-basedir-perl', 'libfile-chdir-perl', 'libfile-copy-link-perl', 'libfile-copy-recursive-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-homedir-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-slurper-perl', 'libfile-stripnondeterminism-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libflac8:amd64', 'libflite1:amd64', 'libfltk-images1.3:amd64', 'libfltk1.3:amd64', 'libfml0', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontbox-java', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfop-java', 'libfreecontact0', 'libfreecontact0v5:amd64', 'libfreehep-export-java', 'libfreehep-graphics2d-java', 'libfreehep-graphicsio-emf-java', 'libfreehep-graphicsio-java', 'libfreehep-graphicsio-pdf-java', 'libfreehep-graphicsio-ps-java', 'libfreehep-graphicsio-svg-java', 'libfreehep-graphicsio-swf-java', 'libfreehep-graphicsio-tests-java', 'libfreehep-io-java', 'libfreehep-swing-java', 'libfreehep-util-java', 'libfreehep-xml-java', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libftgl2:amd64', 'libfuse2:amd64', 'libg20', 'libgail-common:amd64', 'libgail18:amd64', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-4.9-dev:amd64', 'libgcc-6-dev:amd64', 'libgd-graph-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd-text-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgenome-1.3-0v5:amd64', 'libgenometools0', 'libgetopt-euclid-perl', 'libgetopt-java', 'libgetopt-long-descriptive-perl', 'libgetopt-simple-perl', 'libgettextpo-dev:amd64', 'libgettextpo0:amd64', 'libgflags2', 'libgflags2v5', 'libgfortran-4.9-dev:amd64', 'libgfortran-6-dev:amd64', 'libgfortran3:amd64', 'libghemical-data', 'libghemical5v5', 'libgif4:amd64', 'libgif7:amd64', 'libgkarrays1', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglade2-0:amd64', 'libglapi-mesa:amd64', 'libglew1.10:amd64', 'libglew2.0:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglpk-java', 'libglpk36:amd64', 'libglpk40:amd64', 'libglu1-mesa:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnuinet-java', 'libgnumail-java', 'libgnustep-base1.24', 'libgnustep-dl2-0d', 'libgnustep-gui0.24', 'libgnustep-gui0.25', 'libgnutls-deb0-28:amd64', 'libgo-perl', 'libgomp1:amd64', 'libgoogle-glog0', 'libgoogle-glog0v5', 'libgphoto2-6:amd64', 'libgphoto2-l10n', 'libgphoto2-port10:amd64', 'libgphoto2-port12:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgromacs2', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgsl-dev', 'libgsl0ldbl', 'libgsl2:amd64', 'libgssapi-krb5-2:amd64', 'libgstreamer-plugins-base1.0-0:amd64', 'libgstreamer1.0-0:amd64', 'libgtextutils0:amd64', 'libgtextutils0v5:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgtkglext1', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libguava-java', 'libgudev-1.0-0:amd64', 'libgusb2:amd64', 'libgvc6', 'libgvpr2', 'libgzstream0', 'libhamcrest-java', 'libharfbuzz-icu0:amd64', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhdf5-100:amd64', 'libhdf5-8:amd64', 'libhdf5-cpp-100:amd64', 'libheap-perl', 'libhmsbeagle-java', 'libhmsbeagle1', 'libhmsbeagle1v5', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhsqldb-java', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttpclient-java', 'libhttpcore-java', 'libhttpmime-java', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibatis-java', 'libibverbs1', 'libice-dev:amd64', 'libice6:amd64', 'libicu-dev', 'libicu52:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libieee1284-3:amd64', 'libijs-0.35:amd64', 'libilmbase12:amd64', 'libilmbase6:amd64', 'libimport-into-perl', 'libindirect-perl', 'libinput-bin', 'libinput10:amd64', 'libint1', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libirs-export91', 'libisc-export160', 'libisc-export95', 'libisccfg-export90', 'libisl10:amd64', 'libisl15:amd64', 'libisorelax-java', 'libitext-java', 'libitext1-java', 'libitext5-java', 'libitm1:amd64', 'libj2ssh-java', 'libjaba-client-java', 'libjam-java', 'libjargs-java', 'libjas-plotter-java', 'libjasper1:amd64', 'libjava-xmlbuilder-java', 'libjaxen-java', 'libjaxp1.3-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjcommon-java', 'libjdom1-java', 'libjebl2-java', 'libjellyfish-2.0-2', 'libjemalloc1', 'libjets3t-java', 'libjgoodies-common-java', 'libjgoodies-forms-java', 'libjlapack-java', 'libjline-java', 'libjmol-java', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-modernizr', 'libjs-mootools', 'libjs-prototype', 'libjs-scriptaculous', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjsch-java', 'libjson-c2:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjson-perl', 'libjson-xs-perl', 'libjsoncpp0', 'libjsoncpp1:amd64', 'libjsr305-java', 'libjswingreader-java', 'libjung-free-java', 'libjxr-tools', 'libjxr0:amd64', 'libjzlib-java', 'libk5crypto3:amd64', 'libkdf5-2', 'libkeyutils1:amd64', 'libkpathsea6:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libkyotocabinet16v5:amd64', 'liblapack-dev', 'liblapack3', 'liblapacke', 'liblcms2-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm3.5:amd64', 'libllvm3.9:amd64', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'liblog4cpp5', 'liblog4cpp5v5', 'liblog4j1.2-java', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-2:amd64', 'libmagickcore-6.q16-3:amd64', 'libmagickcore-6.q16-3-extra:amd64', 'libmagickwand-6.q16-2:amd64', 'libmagickwand-6.q16-3:amd64', 'libmail-java', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmaloc1', 'libmariadbclient18:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-random-isaac-perl', 'libmath-random-isaac-xs-perl', 'libmath-random-mt-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-tamuanova-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmatthew-debug-java', 'libmbedcrypto0:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedx509-0:amd64', 'libmems-1.6-1v5:amd64', 'libmiglayout-java', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminimap0', 'libmldbm-perl', 'libmng1:amd64', 'libmnl0:amd64', 'libmodule-build-perl', 'libmodule-implementation-perl', 'libmodule-load-conditional-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmoose-perl', 'libmoox-handlesvia-perl', 'libmopac7-1gf', 'libmotif-common', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpj-java', 'libmpx2:amd64', 'libmro-compat-perl', 'libmsv-java', 'libmtdev1:amd64', 'libmtj-java', 'libmultidimensional-perl', 'libmuscle-3.7-1', 'libmysql-java', 'libmysqlclient18:amd64', 'libnaga-java', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libnanoxml2-java', 'libnb-org-openide-util-java', 'libnb-org-openide-util-lookup-java', 'libncbi-vdb2', 'libncbi-wvdb2', 'libncbi6:amd64', 'libncl1', 'libncurses5-dev:amd64', 'libncursesw5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetlib-java', 'libnetpbm10', 'libnettle4:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnucleotidelikelihoodcore0', 'libnuma1:amd64', 'libnumber-compare-perl', 'libnumber-format-perl', 'libobjc4:amd64', 'libogg0:amd64', 'liboglappth2', 'libole-storage-lite-perl', 'libopenbabel4v5', 'libopenblas-base', 'libopenexr22:amd64', 'libopenexr6:amd64', 'libopenjp2-7:amd64', 'libopenjpeg5:amd64', 'libopenmpi1.6', 'libopenmpi2:amd64', 'libopus0:amd64', 'liborc-0.4-0:amd64', 'liboro-java', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-constants-perl', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpal-java', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpango1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpangox-1.0-0:amd64', 'libpangoxft-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparse-recdescent-perl', 'libparse-yapp-perl', 'libpath-tiny-perl', 'libpathplan4', 'libpbbam:amd64', 'libpbdata:amd64', 'libpbihdf:amd64', 'libpbseq', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libperformance0.5', 'libperl4-corelibs-perl', 'libperl5.24:amd64', 'libperlio-gzip-perl', 'libperlio-utf8-strict-perl', 'libpgtypes3:amd64', 'libpicard-java', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng12-dev:amd64', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpod-latex-perl', 'libpod-markdown-perl', 'libpod-readme-perl', 'libpolkit-agent-1-0:amd64', 'libpolkit-backend-1-0:amd64', 'libpolkit-gobject-1-0:amd64', 'libpoppler-qt4-4:amd64', 'libpoppler46:amd64', 'libpoppler64:amd64', 'libpopt0:amd64', 'libpostgresql-jdbc-java', 'libpostscript-perl', 'libpotrace0', 'libpq5:amd64', 'libprocessing-core-java', 'libprocps3:amd64', 'libprotobuf10:amd64', 'libprotobuf9:amd64', 'libproxy1:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libptexenc1:amd64', 'libpth20:amd64', 'libpthread-stubs0-dev:amd64', 'libpulse0:amd64', 'libpvm3:amd64', 'libpython-all-dev:amd64', 'libpython-dev:amd64', 'libpython-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-dev:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libqes0', 'libqt4-dbus:amd64', 'libqt4-declarative:amd64', 'libqt4-designer:amd64', 'libqt4-help:amd64', 'libqt4-network:amd64', 'libqt4-opengl:amd64', 'libqt4-script:amd64', 'libqt4-scripttools:amd64', 'libqt4-sql:amd64', 'libqt4-sql-mysql:amd64', 'libqt4-svg:amd64', 'libqt4-test:amd64', 'libqt4-xml:amd64', 'libqt4-xmlpatterns:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5svg5:amd64', 'libqt5widgets5:amd64', 'libqt5xml5:amd64', 'libqtassistantclient4:amd64', 'libqtcore4:amd64', 'libqtdbus4:amd64', 'libqtgui4:amd64', 'libqtwebkit4:amd64', 'libquadmath0:amd64', 'librdmacm1', 'librdp-taxonomy-tree-java', 'libreadline-dev:amd64', 'libreadline5:amd64', 'libreadonly-perl', 'libregexp-common-perl', 'libregexp-java', 'librelaxng-datatype-java', 'librelion-1.3-1:amd64', 'librelion-1.4-1:amd64', 'librest-0.7-0:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'librhino-java', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby2.1:amd64', 'libruby2.3:amd64', 'libsam-java', 'libsane:amd64', 'libsane-common', 'libsane-extras:amd64', 'libsane-extras-common', 'libsaxon-java', 'libsaxonb-java', 'libsaxonhe-java', 'libsc-data', 'libsc7v5', 'libscalar-list-utils-perl', 'libsctp1:amd64', 'libsdl1.2debian:amd64', 'libsdsl3:amd64', 'libsensors4:amd64', 'libservlet2.5-java', 'libservlet3.1-java', 'libset-intspan-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm-dev:amd64', 'libsm6:amd64', 'libsmithwaterman0', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsnp-sites1', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsprng2', 'libsqlclient1.7', 'libsqlite0', 'libsquizz', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libssw-java', 'libssw0:amd64', 'libstaden-read1', 'libstaden-read11:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstdc++-4.9-dev:amd64', 'libstdc++-6-dev:amd64', 'libsteptalk0', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-uplevel-perl', 'libsuitesparseconfig4:amd64', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsvm3', 'libswing-layout-java', 'libsynctex1:amd64', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtabixpp0:amd64', 'libtablelayout-java', 'libtamuanova-0.2', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.5:amd64', 'libtcl8.6:amd64', 'libtcmalloc-minimal4', 'libtdb1:amd64', 'libterm-readkey-perl', 'libterm-ui-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-pod-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtexlua52:amd64', 'libtexluajit2:amd64', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-glob-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtheora0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtinyxml2.6.2:amd64', 'libtinyxml2.6.2v5:amd64', 'libtk8.5:amd64', 'libtk8.6:amd64', 'libtmglib3', 'libtool', 'libtre5:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libubsan0:amd64', 'libunicode-map-perl', 'libunicode-utf8-perl', 'libunistring0:amd64', 'libunixsocket-java', 'libunwind8', 'liburi-perl', 'libusb-1.0-0:amd64', 'libutempter0:amd64', 'libv4l-0:amd64', 'libv4lconvert0:amd64', 'libvamsas-client-java', 'libvariable-magic-perl', 'libvcflib-tools', 'libvcflib1', 'libvecmath-java', 'libvibrant6b:amd64', 'libvisual-0.4-0:amd64', 'libvisual-0.4-plugins:amd64', 'libvm-ec2-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libvorbisfile3:amd64', 'libvpx1:amd64', 'libvte-common', 'libvte9', 'libwacom-bin', 'libwacom-common', 'libwacom2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwcs5:amd64', 'libwebp5:amd64', 'libwebp6:amd64', 'libwebpdemux1:amd64', 'libwebpdemux2:amd64', 'libwebpmux1:amd64', 'libwebpmux2:amd64', 'libwmf0.2-7:amd64', 'libwrap0:amd64', 'libwsdl4j-java', 'libwww-perl', 'libwww-robotrules-perl', 'libwxbase3.0-0:amd64', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-0:amd64', 'libwxgtk3.0-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-dev:amd64', 'libx11-doc', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxalan2-java', 'libxau-dev:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util0:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcb1-dev:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp-dev:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.1:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxfont1:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxm4:amd64', 'libxml-checker-perl', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlgraphics-commons-java', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxom-java', 'libxpm4:amd64', 'libxpp2-java', 'libxpp3-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt-dev:amd64', 'libxt6:amd64', 'libxtables10', 'libxtables12:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyaml-tiny-perl', 'libzeep3.0', 'libzeep3.0v5', 'libzeus-jscl-java', 'libzstd1', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lksctp-tools', 'lmodern', 'logol-bin', 'loki', 'ltrsift', 'lua-filesystem:amd64', 'lua-lpeg:amd64', 'lua-md5:amd64', 'lynx', 'lynx-common', 'lynx-cur', 'm4', 'macs', 'macsyfinder', 'maffilter', 'mafft', 'mailutils', 'mailutils-common', 'make', 'man-db', 'manpages-dev', 'mapdamage', 'mapsembler2', 'maq', 'maqview', 'mariadb-client-10.1', 'mariadb-client-core-10.1', 'mariadb-common', 'mash', 'massxpert', 'massxpert-data', 'mauve-aligner', 'mcl', 'med-bio', 'med-config', 'med-tasks', 'melting', 'menu', 'meryl', 'mesa-utils', 'metaphlan2', 'metaphlan2-data', 'metastudent', 'metastudent-data', 'metastudent-data-2', 'mhap', 'microbegps', 'microbiomeutil', 'microbiomeutil-data', 'mime-support', 'minia', 'miniasm', 'minimap', 'mipe', 'mira-assembler', 'mira-rfam-12s-rrna', 'mknfonts.tool', 'mlv-smile', 'mothur', 'mpi-default-bin', 'mpqc', 'mrbayes', 'mrs', 'mummer', 'murasaki', 'murasaki-common', 'muscle', 'mustang', 'mysql-client', 'mysql-common', 'nanopolish', 'nast-ier', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-entrez-direct', 'ncbi-epcr', 'ncbi-seg', 'ncbi-tools-bin', 'ncbi-tools-x11', 'ncl-tools', 'ncoils', 'neobio', 'netbase', 'netpbm', 'njplot', 'norsnet', 'norsp', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'openjdk-7-jre-headless:amd64', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openms-common', 'openssh-client', 'openssl', 'paraclu', 'parafly', 'parallel', 'parsinsert', 'parsnp', 'patch', 'pbalign', 'pbbamtools', 'pbbarcode', 'pbdagcon', 'pbgenomicconsensus', 'pbh5tools', 'pbhoney', 'pbjelly', 'pbsim', 'pbsuite', 'pdb2pqr', 'perl', 'perl-doc', 'perl-modules', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'perl-tk', 'perlprimer', 'perm', 'phipack', 'phybin', 'phylip', 'phyml', 'physamp', 'phyutility', 'picard-tools', 'piler', 'pinentry-curses', 'pirs', 'pirs-profiles', 'pkg-config', 'placnet', 'plasmidomics', 'plast', 'plink', 'plink1.9', 'plip', 'po-debconf', 'poa', 'policykit-1', 'poppler-data', 'populations', 'poretools', 'pp-popularity-contest', 'prank', 'predictnls', 'predictprotein', 'prerex', 'preview-latex-style', 'prime-phylo', 'primer3', 'proalign', 'probabel', 'probalign', 'probcons', 'proda', 'prodigal', 'profbval', 'profisis', 'profnet-bval', 'profnet-chop', 'profnet-con', 'profnet-isis', 'profnet-md', 'profnet-norsnet', 'profnet-prof', 'profnet-snapfun', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'progressivemauve', 'prosper', 'proteinortho', 'prottest', 'ps2eps', 'psmisc', 'publicsuffix', 'pvm', 'pycorrfit', 'pymol', 'pymol-data', 'pynast', 'pyqi', 'pyscanfcs', 'python', 'python-alabaster', 'python-all', 'python-all-dev', 'python-antlr', 'python-astropy', 'python-avro', 'python-babel', 'python-babel-localedata', 'python-backports-shutil-get-terminal-size', 'python-ball', 'python-ballview', 'python-biom-format', 'python-biopython', 'python-biopython-doc', 'python-bs4', 'python-cairo', 'python-cffi-backend', 'python-chardet', 'python-click', 'python-cogent', 'python-colorama', 'python-configobj', 'python-configparser', 'python-crypto', 'python-cryptography', 'python-cvxopt', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-dendropy', 'python-dev', 'python-docutils', 'python-egenix-mxdatetime', 'python-egenix-mxtools', 'python-enum34', 'python-funcsigs', 'python-functools32', 'python-future', 'python-gdata', 'python-glade2', 'python-gmpy', 'python-gobject-2', 'python-gtk2', 'python-h5py', 'python-html5lib', 'python-htseq', 'python-idna', 'python-imagesize', 'python-imaging', 'python-intervaltree', 'python-intervaltree-bio', 'python-ipaddress', 'python-ipython', 'python-ipython-genutils', 'python-iso8601', 'python-jdcal', 'python-jinja2', 'python-joblib', 'python-kineticstools', 'python-lmfit', 'python-lxml', 'python-mako', 'python-markupsafe', 'python-matplotlib', 'python-matplotlib-data', 'python-matplotlib-venn', 'python-minimal', 'python-mock', 'python-mpi4py', 'python-mpmath', 'python-msgpack', 'python-multipletau', 'python-mysqldb', 'python-networkx', 'python-nose', 'python-numexpr', 'python-numpy', 'python-openbabel', 'python-opengl', 'python-openpyxl', 'python-openssl', 'python-pandas', 'python-pandas-lib', 'python-pathlib2', 'python-patsy', 'python-pbalign', 'python-pbbanana', 'python-pbcommand', 'python-pbconsensuscore', 'python-pbcore', 'python-pbgenomicconsensus', 'python-pbh5tools', 'python-pbr', 'python-pbsuite-utils', 'python-pexpect', 'python-pickleshare', 'python-pil:amd64', 'python-pkg-resources', 'python-ply', 'python-pmw', 'python-prompt-toolkit', 'python-ptyprocess', 'python-py', 'python-pyasn1', 'python-pyfits', 'python-pyglet', 'python-pygments', 'python-pygraphviz', 'python-pyparsing', 'python-pyrex', 'python-pysam', 'python-pysqlite2', 'python-pytest', 'python-qcli', 'python-qt4', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-requests', 'python-roman', 'python-rpy2', 'python-ruffus', 'python-scipy', 'python-seaborn', 'python-setuptools', 'python-simplegeneric', 'python-simplejson', 'python-singledispatch', 'python-sip', 'python-six', 'python-sklearn', 'python-sklearn-lib', 'python-sortedcontainers', 'python-sphinx', 'python-sqlalchemy', 'python-sqlalchemy-ext', 'python-statsmodels', 'python-statsmodels-lib', 'python-subprocess32', 'python-support', 'python-sympy', 'python-sympy-doc', 'python-tables', 'python-tables-data', 'python-tables-lib', 'python-tk', 'python-traitlets', 'python-tz', 'python-urllib3', 'python-wcwidth', 'python-webencodings', 'python-wxgtk3.0', 'python-wxversion', 'python-xlrd', 'python-xlwt', 'python-yaml', 'python2.7', 'python2.7-dev', 'python2.7-minimal', 'python3', 'python3-biopython', 'python3-bs4', 'python3-bz2file', 'python3-chardet', 'python3-cutadapt', 'python3-decorator', 'python3-dendropy', 'python3-html5lib', 'python3-jdcal', 'python3-lxml', 'python3-minimal', 'python3-networkx', 'python3-nose', 'python3-numpy', 'python3-openpyxl', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-py', 'python3-pymummer', 'python3-pysam', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-screed', 'python3-six', 'python3-webencodings', 'python3-xopen', 'python3-yaml', 'python3.4', 'python3.4-minimal', 'python3.5', 'python3.5-minimal', 'qdbus', 'qiime', 'qiime-data', 'qt-at-spi:amd64', 'qt5-gtk-platformtheme:amd64', 'qtchooser', 'qtcore4-l10n', 'qtltools', 'qttranslations5-l10n', 'r-base', 'r-base-core', 'r-base-dev', 'r-base-html', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biomformat', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-cummerbund', 'r-bioc-deseq2', 'r-bioc-dnacopy', 'r-bioc-ebseq', 'r-bioc-edger', 'r-bioc-ensembldb', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-hilbertvis', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-limma', 'r-bioc-mergeomics', 'r-bioc-metagenomeseq', 'r-bioc-multtest', 'r-bioc-phyloseq', 'r-bioc-qvalue', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-acepack', 'r-cran-ade4', 'r-cran-adegenet', 'r-cran-adegraphics', 'r-cran-adephylo', 'r-cran-ape', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bbmle', 'r-cran-bio3d', 'r-cran-bitops', 'r-cran-blockmodeling', 'r-cran-bold', 'r-cran-boot', 'r-cran-brew', 'r-cran-catools', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cluster', 'r-cran-coda', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-combinat', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-deldir', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-distory', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-ellipse', 'r-cran-evaluate', 'r-cran-fail', 'r-cran-fastcluster', 'r-cran-fastmatch', 'r-cran-fields', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-g.data', 'r-cran-gam', 'r-cran-gdata', 'r-cran-genabel', 'r-cran-genabel.data', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glmnet', 'r-cran-globals', 'r-cran-gmodels', 'r-cran-googlevis', 'r-cran-gplots', 'r-cran-gridbase', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-igraph', 'r-cran-inline', 'r-cran-irlba', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-learnbayes', 'r-cran-listenv', 'r-cran-littler', 'r-cran-luminescence', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-minpack.lm', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nmf', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-optparse', 'r-cran-permute', 'r-cran-phangorn', 'r-cran-phylobase', 'r-cran-pkgkitten', 'r-cran-pkgmaker', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-proto', 'r-cran-pscbs', 'r-cran-qtl', 'r-cran-quadprog', 'r-cran-r.cache', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-randomforest', 'r-cran-raster', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppgsl', 'r-cran-rcurl', 'r-cran-readxl', 'r-cran-registry', 'r-cran-rentrez', 'r-cran-reshape', 'r-cran-reshape2', 'r-cran-rgl', 'r-cran-ritis', 'r-cran-rlumshiny', 'r-cran-rncl', 'r-cran-rnexml', 'r-cran-rngtools', 'r-cran-rocr', 'r-cran-rotl', 'r-cran-rpart', 'r-cran-rredlist', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-scatterd3', 'r-cran-segmented', 'r-cran-sendmailr', 'r-cran-seqinr', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinybs', 'r-cran-snow', 'r-cran-solrium', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spam', 'r-cran-spatial', 'r-cran-spdep', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-taxize', 'r-cran-tcltk2', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-treescape', 'r-cran-uuid', 'r-cran-vegan', 'r-cran-viridis', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'r-doc-html', 'r-mathlib', 'r-other-mott-happy.hbrem', 'r-recommended', 'rake', 'rambo-k', 'rapmap', 'rasmol', 'raster3d', 'rate4site', 'raxml', 'ray', 'rdp-alignment', 'rdp-classifier', 'rdp-classifier-doc', 'rdp-readseq', 'readseq', 'reapr', 'relion-bin', 'rename', 'repeatmasker-recon', 'reprof', 'rhino', 'rna-star', 'rnahybrid', 'roary', 'rsem', 'rsync', 'rtax', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby2.1', 'ruby2.3', 'rubygems-integration', 'saint', 'salmon', 'samtools', 'sane-utils', 'science-config', 'science-tasks', 'scrm', 'scythe', 'seaview', 'seer', 'seqan-apps', 'seqprep', 'seqtk', 'sga', 'sgml-base', 'shared-mime-info', 'sibsim4', 'sickle', 'sigma-align', 'sim4', 'sim4db', 'smalt', 'smithwaterman', 'smrtanalysis', 'snap', 'snap-aligner', 'sniffles', 'snp-sites', 'snpomatic', 'soapdenovo', 'soapdenovo2', 'sortmerna', 'spaced', 'spades', 'sphinx-common', 'sphinx-doc', 'sphinx-rtd-theme-common', 'sprai', 'spread-phy', 'sqlite3', 'squizz', 'sra-toolkit', 'sra-toolkit-libs0', 'srst2', 'ssake', 'ssl-cert', 'sspace', 'ssw-align', 'stacks', 'staden', 'staden-common', 'staden-io-lib-utils', 'steptalk', 'subread', 'suitename', 'sumaclust', 'sumatra', 'sumtrees', 'surankco', 'swarm', 'swi-prolog', 'swi-prolog-nox', 'swi-prolog-x', 'sysstat', 't-coffee', 't1utils', 'tabix', 'tantan', 'tasksel', 'tasksel-data', 'tcl', 'tcl8.6', 'tcllib', 'tcpd', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-binaries', 'texlive-extra-utils', 'texlive-font-utils', 'texlive-fonts-extra', 'texlive-fonts-extra-doc', 'texlive-fonts-recommended', 'texlive-fonts-recommended-doc', 'texlive-generic-extra', 'texlive-generic-recommended', 'texlive-latex-base', 'texlive-latex-base-doc', 'texlive-latex-extra', 'texlive-latex-extra-doc', 'texlive-latex-recommended', 'texlive-latex-recommended-doc', 'texlive-math-extra', 'texlive-pictures', 'texlive-pictures-doc', 'texlive-pstricks', 'texlive-pstricks-doc', 'texlive-science', 'texlive-science-doc', 'theseus', 'tigr-glimmer', 'time', 'tipa', 'tk', 'tk-table:amd64', 'tk8.6', 'tk8.6-blt2.5', 'tklib', 'tm-align', 'tophat', 'topp', 'toppred', 'transdecoder', 'transrate-tools', 'transtermhp', 'tree-puzzle', 'tree-puzzle-doc', 'treeview', 'treeviewx', 'trimmomatic', 'trinityrnaseq', 'trinityrnaseq-examples', 'ttf-adf-accanthis', 'ttf-adf-gillius', 'ttf-adf-universalis', 'ttf-bitstream-vera', 'ttf-dejavu', 'ttf-dejavu-core', 'ttf-dejavu-extra', 'ttf-liberation', 'uc-echo', 'ucf', 'unzip', 'update-inetd', 'varna', 'vcftools', 'velvet', 'velvetoptimiser', 'vprerex', 'vsearch', 'wigeon', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'x11proto-core-dev', 'x11proto-input-dev', 'x11proto-kb-dev', 'xauth', 'xbitmaps', 'xdg-user-dirs', 'xdg-utils', 'xfonts-100dpi', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xorg-sgml-doctools', 'xsltproc', 'xterm', 'xtrans-dev', 'xz-utils', 'zalign', 'zip', 'zlib1g-dev:amd64'] 40m42.0s DUMP: dpkg: warning: ignoring request to remove abacas which isn't installed dpkg: warning: ignoring request to remove abyss which isn't installed dpkg: warning: ignoring request to remove acedb-other which isn't installed dpkg: warning: ignoring request to remove acedb-other-belvu which isn't installed dpkg: warning: ignoring request to remove acedb-other-dotter which isn't installed dpkg: warning: ignoring request to remove adapterremoval which isn't installed dpkg: warning: ignoring request to remove adun-core which isn't installed dpkg: warning: ignoring request to remove adun.app which isn't installed (Reading database ... 9086 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (3.22.0-1+deb9u1) ... dpkg: warning: ignoring request to remove aegean which isn't installed dpkg: warning: ignoring request to remove aevol which isn't installed dpkg: warning: ignoring request to remove aglfn which isn't installed dpkg: warning: ignoring request to remove alien-hunter which isn't installed dpkg: warning: ignoring request to remove alter-sequence-alignment which isn't installed dpkg: warning: ignoring request to remove altree which isn't installed dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove ampliconnoise which isn't installed dpkg: warning: ignoring request to remove andi which isn't installed dpkg: warning: ignoring request to remove anfo which isn't installed dpkg: warning: ignoring request to remove ant which isn't installed dpkg: warning: ignoring request to remove ant-contrib which isn't installed dpkg: warning: ignoring request to remove ant-optional which isn't installed Purging configuration files for apache2 (2.4.25-3+deb9u9) ... dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed dpkg: warning: ignoring request to remove apbs which isn't installed dpkg: warning: ignoring request to remove aragorn which isn't installed dpkg: warning: ignoring request to remove arden which isn't installed dpkg: warning: ignoring request to remove ariba which isn't installed dpkg: warning: ignoring request to remove art-nextgen-simulation-tools which isn't installed dpkg: warning: ignoring request to remove artemis which isn't installed dpkg: warning: ignoring request to remove artfastqgenerator which isn't installed dpkg: warning: ignoring request to remove aspell which isn't installed Purging configuration files for aspell-en (2016.11.20-0-0.1) ... dpkg: warning: ignoring request to remove astro-tasks which isn't installed Purging configuration files for at-spi2-core (2.22.0-6+deb9u1) ... dpkg: warning: ignoring request to remove atac which isn't installed dpkg: warning: ignoring request to remove augustus which isn't installed dpkg: warning: ignoring request to remove augustus-data which isn't installed Purging configuration files for autoconf (2.69-10) ... dpkg: warning: ignoring request to remove autodock which isn't installed dpkg: warning: ignoring request to remove autodock-vina which isn't installed dpkg: warning: ignoring request to remove autogrid which isn't installed dpkg: warning: ignoring request to remove automake which isn't installed dpkg: warning: ignoring request to remove autopoint which isn't installed dpkg: warning: ignoring request to remove autotools-dev which isn't installed dpkg: warning: ignoring request to remove axe-demultiplexer which isn't installed dpkg: warning: ignoring request to remove ballview which isn't installed dpkg: warning: ignoring request to remove bamtools which isn't installed dpkg: warning: ignoring request to remove barrnap which isn't installed Purging configuration files for bauble (0.9.7-2.1) ... Purging configuration files for bc (1.06.95-9+b3) ... dpkg: warning: ignoring request to remove bcftools which isn't installed dpkg: warning: ignoring request to remove beagle which isn't installed Purging configuration files for beast-mcmc (1.8.4+dfsg.1-1) ... dpkg: warning: ignoring request to remove beast2-mcmc which isn't installed Purging configuration files for bedtools (2.26.0+dfsg-3) ... Purging configuration files for beignet-opencl-icd:amd64 (1.3.0-4) ... dpkg: warning: ignoring request to remove berkeley-express which isn't installed Purging configuration files for binfmt-support (2.1.6-2) ... dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove bio-eagle which isn't installed dpkg: warning: ignoring request to remove bio-rainbow which isn't installed Purging configuration files for biomaj (1.2.3-11) ... Warning, BioMAJ database for MySQL is not deleted by process removal. dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed dpkg: warning: ignoring request to remove biosquid which isn't installed dpkg: warning: ignoring request to remove blasr which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed Purging configuration files for blends-common (0.6.96) ... dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed Purging configuration files for boxshade (3.3.1-10) ... dpkg: warning: ignoring request to remove brig which isn't installed Purging configuration files for bsdmainutils (9.0.12+nmu1) ... dpkg: warning: ignoring request to remove build-essential which isn't installed Purging configuration files for bwa (0.7.15-2+deb9u1) ... dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed Purging configuration files for ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20170929~deb9u3) ... dpkg: warning: while removing ca-certificates-java, directory '/etc/ssl/certs' not empty so not removed dpkg: warning: ignoring request to remove cassiopee which isn't installed dpkg: warning: ignoring request to remove cd-hit which isn't installed dpkg: warning: ignoring request to remove cdbfasta which isn't installed dpkg: warning: ignoring request to remove cdbs which isn't installed dpkg: warning: ignoring request to remove cgview which isn't installed dpkg: warning: ignoring request to remove chimeraslayer which isn't installed dpkg: warning: ignoring request to remove circlator which isn't installed Purging configuration files for circos (0.69.4+dfsg-1) ... dpkg: warning: ignoring request to remove circos-tools which isn't installed dpkg: warning: ignoring request to remove clearcut which isn't installed dpkg: warning: ignoring request to remove clonalframe which isn't installed dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-5) ... dpkg: warning: ignoring request to remove clustalx which isn't installed dpkg: warning: ignoring request to remove codonw which isn't installed Purging configuration files for colord (1.3.3-2) ... dpkg: warning: ignoring request to remove colord-data which isn't installed dpkg: warning: ignoring request to remove concavity which isn't installed dpkg: warning: ignoring request to remove conservation-code which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-4.9 which isn't installed dpkg: warning: ignoring request to remove cpp-6 which isn't installed dpkg: warning: ignoring request to remove crac which isn't installed Purging configuration files for critterding (1.0-beta12.1-1.3+b1) ... Purging configuration files for cron (3.0pl1-128+deb9u1) ... dpkg: warning: ignoring request to remove curl which isn't installed dpkg: warning: ignoring request to remove cutadapt which isn't installed dpkg: warning: ignoring request to remove cython which isn't installed dpkg: warning: ignoring request to remove daligner which isn't installed dpkg: warning: ignoring request to remove dascrubber which isn't installed dpkg: warning: ignoring request to remove datamash which isn't installed dpkg: warning: ignoring request to remove dawg which isn't installed dpkg: warning: ignoring request to remove dazzdb which isn't installed Purging configuration files for dbus (1.10.32-0+deb9u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory dpkg: warning: ignoring request to remove dbus-java-bin which isn't installed dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed dpkg: warning: ignoring request to remove debhelper which isn't installed dpkg: warning: ignoring request to remove debichem-tasks which isn't installed dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove default-mysql-client which isn't installed dpkg: warning: ignoring request to remove dh-autoreconf which isn't installed dpkg: warning: ignoring request to remove dh-python which isn't installed dpkg: warning: ignoring request to remove dh-strip-nondeterminism which isn't installed dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed Purging configuration files for dictionaries-common (1.27.2) ... dpkg: warning: ignoring request to remove dindel which isn't installed dpkg: warning: ignoring request to remove discosnp which isn't installed dpkg: warning: ignoring request to remove disulfinder which isn't installed dpkg: warning: ignoring request to remove disulfinder-data which isn't installed dpkg: warning: ignoring request to remove dmidecode which isn't installed dpkg: warning: ignoring request to remove dnaclust which isn't installed Purging configuration files for docutils-common (0.13.1+dfsg-2) ... dpkg: warning: ignoring request to remove docutils-doc which isn't installed Purging configuration files for dpkg-dev (1.18.25) ... dpkg: warning: ignoring request to remove dssp which isn't installed dpkg: warning: ignoring request to remove dvipng which isn't installed dpkg: warning: ignoring request to remove dwgsim which isn't installed dpkg: warning: ignoring request to remove ea-utils which isn't installed dpkg: warning: ignoring request to remove ecopcr which isn't installed dpkg: warning: ignoring request to remove edtsurf which isn't installed dpkg: warning: ignoring request to remove eigensoft which isn't installed Purging configuration files for emacsen-common (2.0.8) ... dpkg: warning: ignoring request to remove embassy-domainatrix which isn't installed dpkg: warning: ignoring request to remove embassy-domalign which isn't installed dpkg: warning: ignoring request to remove embassy-domsearch which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed Purging configuration files for exim4 (4.89-2+deb9u7) ... Purging configuration files for exim4-base (4.89-2+deb9u7) ... Purging configuration files for exim4-config (4.89-2+deb9u7) ... dpkg-statoverride: warning: no override present Purging configuration files for exim4-daemon-light (4.89-2+deb9u7) ... dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove f2j which isn't installed dpkg: warning: ignoring request to remove fakeroot which isn't installed dpkg: warning: ignoring request to remove falcon which isn't installed dpkg: warning: ignoring request to remove fastahack which isn't installed dpkg: warning: ignoring request to remove fastaq which isn't installed Purging configuration files for fastdnaml (1.2.2-11+b1) ... dpkg: warning: ignoring request to remove fastjar which isn't installed Purging configuration files for fastlink (4.1P-fix100+dfsg-1+b1) ... dpkg: warning: ignoring request to remove fastml which isn't installed Purging configuration files for fastqc (0.11.5+dfsg-6) ... dpkg: warning: ignoring request to remove fastqtl which isn't installed dpkg: warning: ignoring request to remove fasttree which isn't installed dpkg: warning: ignoring request to remove fastx-toolkit which isn't installed dpkg: warning: ignoring request to remove ffindex which isn't installed Purging configuration files for figtree (1.4.2+dfsg-2) ... dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove filo which isn't installed dpkg: warning: ignoring request to remove fitgcp which isn't installed dpkg: warning: ignoring request to remove flexbar which isn't installed dpkg: warning: ignoring request to remove fml-asm which isn't installed Purging configuration files for fontconfig (2.11.0-6.7+b1) ... Purging configuration files for fontconfig-config (2.11.0-6.7) ... dpkg: warning: ignoring request to remove fonts-cabin which isn't installed dpkg: warning: ignoring request to remove fonts-circos-symbols which isn't installed dpkg: warning: ignoring request to remove fonts-cmu which isn't installed dpkg: warning: ignoring request to remove fonts-comfortaa which isn't installed Purging configuration files for fonts-croscore (20161116-1) ... Purging configuration files for fonts-crosextra-caladea (20130214-1) ... Purging configuration files for fonts-crosextra-carlito (20130920-1) ... dpkg: warning: ignoring request to remove fonts-dejavu which isn't installed Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which isn't installed Purging configuration files for fonts-droid (1:4.4.4r2-6) ... Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: ignoring request to remove fonts-ebgaramond which isn't installed dpkg: warning: ignoring request to remove fonts-ebgaramond-extra which isn't installed dpkg: warning: ignoring request to remove fonts-font-awesome which isn't installed dpkg: warning: ignoring request to remove fonts-freefont-otf which isn't installed dpkg: warning: ignoring request to remove fonts-freefont-ttf which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-artemisia which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-complutum which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-didot which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-neohellenic which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-olga which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-solomos which isn't installed dpkg: warning: ignoring request to remove fonts-inconsolata which isn't installed Purging configuration files for fonts-junicode (0.7.8-2) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed Purging configuration files for fonts-linuxlibertine (5.3.0-2) ... Purging configuration files for fonts-lmodern (2.004.5-3) ... dpkg: warning: ignoring request to remove fonts-lobster which isn't installed dpkg: warning: ignoring request to remove fonts-lobstertwo which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed Purging configuration files for fonts-noto-hinted (20161116-1) ... Purging configuration files for fonts-noto-mono (20161116-1) ... dpkg: warning: ignoring request to remove fonts-oflb-asana-math which isn't installed dpkg: warning: ignoring request to remove fonts-roboto-hinted which isn't installed dpkg: warning: ignoring request to remove fonts-sil-gentium which isn't installed dpkg: warning: ignoring request to remove fonts-sil-gentium-basic which isn't installed dpkg: warning: ignoring request to remove fonts-sil-gentiumplus which isn't installed dpkg: warning: ignoring request to remove fonts-sil-gentiumplus-compact which isn't installed dpkg: warning: ignoring request to remove fonts-stix which isn't installed Purging configuration files for fonts-texgyre (20160520-1) ... dpkg: warning: ignoring request to remove fop which isn't installed Purging configuration files for freecontact (1.0.21-5) ... dpkg: warning: ignoring request to remove freeglut3 which isn't installed dpkg: warning: ignoring request to remove fsa which isn't installed dpkg: warning: ignoring request to remove fsm-lite which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-4.9 which isn't installed dpkg: warning: ignoring request to remove g++-6 which isn't installed dpkg: warning: ignoring request to remove gamgi which isn't installed dpkg: warning: ignoring request to remove garli which isn't installed Purging configuration files for garlic (1.6-1.1+b2) ... dpkg: warning: ignoring request to remove gasic which isn't installed dpkg: warning: ignoring request to remove gawk which isn't installed Purging configuration files for gbrowse (2.56+dfsg-2) ... dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-4.9 which isn't installed dpkg: warning: ignoring request to remove gcc-6 which isn't installed dpkg: warning: ignoring request to remove gdpc which isn't installed dpkg: warning: ignoring request to remove genometools which isn't installed dpkg: warning: ignoring request to remove genometools-common which isn't installed dpkg: warning: ignoring request to remove gentle which isn't installed dpkg: warning: ignoring request to remove gettext which isn't installed dpkg: warning: ignoring request to remove gettext-base which isn't installed dpkg: warning: ignoring request to remove gff2aplot which isn't installed dpkg: warning: ignoring request to remove gff2ps which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-4.9 which isn't installed dpkg: warning: ignoring request to remove gfortran-6 which isn't installed dpkg: warning: ignoring request to remove ghemical which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed dpkg: warning: ignoring request to remove giira which isn't installed dpkg: warning: ignoring request to remove glam2 which isn't installed dpkg: warning: ignoring request to remove glib-networking which isn't installed dpkg: warning: ignoring request to remove glib-networking-common which isn't installed dpkg: warning: ignoring request to remove glib-networking-services which isn't installed dpkg: warning: ignoring request to remove glpk-utils which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed Purging configuration files for gnupg-agent (2.1.18-8~deb9u4) ... dpkg: warning: ignoring request to remove gnuplot which isn't installed dpkg: warning: ignoring request to remove gnuplot-data which isn't installed dpkg: warning: ignoring request to remove gnuplot-qt which isn't installed dpkg: warning: ignoring request to remove gnustep-back-common which isn't installed dpkg: warning: ignoring request to remove gnustep-back0.25 which isn't installed dpkg: warning: ignoring request to remove gnustep-back0.25-cairo which isn't installed dpkg: warning: ignoring request to remove gnustep-base-common which isn't installed Purging configuration files for gnustep-base-runtime (1.24.9-3.1+deb9u1) ... Purging configuration files for gnustep-common (2.6.8-2.1) ... Purging configuration files for gnustep-dl2-postgresql-adaptor (0.12.0-15.1) ... dpkg: warning: ignoring request to remove gnustep-gui-common which isn't installed dpkg: warning: ignoring request to remove gnustep-gui-runtime which isn't installed dpkg: warning: ignoring request to remove graphlan which isn't installed Purging configuration files for graphviz (2.38.0-17) ... dpkg: warning: ignoring request to remove grinder which isn't installed Purging configuration files for groff-base (1.22.3-9) ... dpkg: warning: ignoring request to remove gromacs which isn't installed dpkg: warning: ignoring request to remove gromacs-data which isn't installed dpkg: warning: ignoring request to remove gsettings-desktop-schemas which isn't installed Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... dpkg: warning: ignoring request to remove gstreamer1.0-plugins-base which isn't installed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove gubbins which isn't installed dpkg: warning: ignoring request to remove guile-2.0-libs which isn't installed dpkg: warning: ignoring request to remove gwama which isn't installed dpkg: warning: ignoring request to remove harvest-tools which isn't installed dpkg: warning: ignoring request to remove hdf5-tools which isn't installed dpkg: warning: ignoring request to remove hhsuite which isn't installed dpkg: warning: ignoring request to remove hhsuite-data which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed dpkg: warning: ignoring request to remove hilive which isn't installed dpkg: warning: ignoring request to remove hisat2 which isn't installed dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove hmmer2 which isn't installed dpkg: warning: ignoring request to remove hyphy-common which isn't installed dpkg: warning: ignoring request to remove hyphy-mpi which isn't installed dpkg: warning: ignoring request to remove hyphygui which isn't installed dpkg: warning: ignoring request to remove icc-profiles-free which isn't installed Purging configuration files for icedtea-netx-common (1.6.2-3.1+deb9u1) ... dpkg: warning: ignoring request to remove icu-devtools which isn't installed dpkg: warning: ignoring request to remove idba which isn't installed Purging configuration files for ifupdown (0.8.19) ... Purging configuration files for imagemagick (8:6.9.7.4+dfsg-11+deb9u8) ... Purging configuration files for imagemagick-6-common (8:6.9.7.4+dfsg-11+deb9u8) ... dpkg: warning: ignoring request to remove imagemagick-6.q16 which isn't installed Purging configuration files for imagemagick-common (8:6.9.7.4+dfsg-11+deb9u8) ... dpkg: warning: ignoring request to remove indelible which isn't installed dpkg: warning: ignoring request to remove infernal which isn't installed dpkg: warning: ignoring request to remove intltool-debian which isn't installed dpkg: warning: ignoring request to remove ipig which isn't installed Purging configuration files for iproute2 (4.9.0-1+deb9u1) ... dpkg: warning: ignoring request to remove ipython which isn't installed dpkg: warning: ignoring request to remove iqtree which isn't installed Purging configuration files for isc-dhcp-client (4.3.5-3+deb9u1) ... dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed dpkg: warning: ignoring request to remove iso-codes which isn't installed dpkg: warning: ignoring request to remove isympy which isn't installed dpkg: warning: ignoring request to remove isympy-common which isn't installed dpkg: warning: ignoring request to remove iva which isn't installed dpkg: warning: ignoring request to remove jaligner which isn't installed Purging configuration files for jalview (2.7.dfsg-4) ... dpkg: warning: ignoring request to remove jarwrapper which isn't installed Purging configuration files for java-common (0.58+deb9u1) ... dpkg: warning: ignoring request to remove java-wrappers which isn't installed dpkg: warning: ignoring request to remove javahelp2 which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove jellyfish which isn't installed Purging configuration files for jemboss (6.6.0+dfsg-6) ... Purging configuration files for jmodeltest (2.1.10+dfsg-5) ... Purging configuration files for jmol (14.6.4+2016.11.05+dfsg1-3) ... dpkg: warning: ignoring request to remove jmol-applet which isn't installed dpkg: warning: ignoring request to remove junit which isn't installed dpkg: warning: ignoring request to remove junit4 which isn't installed Purging configuration files for kalign (1:2.03+20110620-3) ... dpkg: warning: ignoring request to remove khmer which isn't installed Purging configuration files for khmer-common (2.0+dfsg-10) ... dpkg: warning: ignoring request to remove kineticstools which isn't installed dpkg: warning: ignoring request to remove kineticstools-data which isn't installed dpkg: warning: ignoring request to remove king which isn't installed dpkg: warning: ignoring request to remove king-probe which isn't installed dpkg: warning: ignoring request to remove kissplice which isn't installed dpkg: warning: ignoring request to remove kmc which isn't installed dpkg: warning: ignoring request to remove kmer which isn't installed dpkg: warning: ignoring request to remove kraken which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed Purging configuration files for ksh (93u+20120801-3.1) ... dpkg: warning: ignoring request to remove lambda-align which isn't installed dpkg: warning: ignoring request to remove laptop-detect which isn't installed dpkg: warning: ignoring request to remove last-align which isn't installed dpkg: warning: ignoring request to remove leaff which isn't installed dpkg: warning: ignoring request to remove lefse which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libai-fann-perl which isn't installed dpkg: warning: ignoring request to remove libaio1 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libamd2 which isn't installed Purging configuration files for libamd2.3.1:amd64 (1:4.2.1-3) ... dpkg: warning: ignoring request to remove libanfo0 which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libanyevent-cachedns-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-http-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-perl which isn't installed Purging configuration files for libao-common (1.2.2-1) ... dpkg: warning: ignoring request to remove libao4 which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed dpkg: warning: ignoring request to remove libapache-mime4j-java which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.10-2+deb9u1) ... dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libarchive-extract-perl which isn't installed dpkg: warning: ignoring request to remove libarchive-zip-perl which isn't installed dpkg: warning: ignoring request to remove libarchive13 which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libarmadillo7 which isn't installed dpkg: warning: ignoring request to remove libarpack2 which isn't installed dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libarray-utils-perl which isn't installed Purging configuration files for libart-2.0-2:amd64 (2.3.21-2) ... Purging configuration files for libasan1:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove libasan3 which isn't installed dpkg: warning: ignoring request to remove libasm-java which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libaspell15 which isn't installed dpkg: warning: ignoring request to remove libasprintf-dev which isn't installed dpkg: warning: ignoring request to remove libasprintf0v5 which isn't installed dpkg: warning: ignoring request to remove libasync-interrupt-perl which isn't installed dpkg: warning: ignoring request to remove libasyncns0 which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatk-bridge2.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk-wrapper-java which isn't installed dpkg: warning: ignoring request to remove libatk-wrapper-java-jni which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk1.0-data which isn't installed dpkg: warning: ignoring request to remove libatlas3-base which isn't installed dpkg: warning: ignoring request to remove libatm1 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libatspi2.0-0 which isn't installed dpkg: warning: ignoring request to remove libaudio2 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libavalon-framework-java which isn't installed dpkg: warning: ignoring request to remove libaxis-java which isn't installed dpkg: warning: ignoring request to remove libb-hooks-endofscope-perl which isn't installed dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove libball1.4 which isn't installed dpkg: warning: ignoring request to remove libball1.4-data which isn't installed dpkg: warning: ignoring request to remove libballview1.4 which isn't installed Purging configuration files for libbambamc0 (0.0.50-1) ... Purging configuration files for libbamtools2.3.0 (2.3.0+dfsg-2) ... dpkg: warning: ignoring request to remove libbamtools2.4.0 which isn't installed dpkg: warning: ignoring request to remove libbareword-filehandles-perl which isn't installed dpkg: warning: ignoring request to remove libbatik-java which isn't installed dpkg: warning: ignoring request to remove libbcmail-java which isn't installed dpkg: warning: ignoring request to remove libbcpkix-java which isn't installed Purging configuration files for libbcprov-java (1.56-1+deb9u2) ... dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed dpkg: warning: ignoring request to remove libbio-coordinate-perl which isn't installed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libbio-scf-perl which isn't installed dpkg: warning: ignoring request to remove libbiojava-java which isn't installed dpkg: warning: ignoring request to remove libbiojava1.7-java which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas-dev which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblasr which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libboost-atomic1.62.0 which isn't installed Purging configuration files for libboost-chrono1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-chrono1.62.0 which isn't installed Purging configuration files for libboost-date-time1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-date-time1.62.0 which isn't installed Purging configuration files for libboost-filesystem1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-filesystem1.62.0 which isn't installed Purging configuration files for libboost-iostreams1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-iostreams1.62.0 which isn't installed Purging configuration files for libboost-math1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-math1.62.0 which isn't installed Purging configuration files for libboost-mpi1.55.0 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-mpi1.62.0 which isn't installed Purging configuration files for libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-program-options1.62.0 which isn't installed Purging configuration files for libboost-random1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-random1.62.0 which isn't installed Purging configuration files for libboost-regex1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-regex1.62.0 which isn't installed Purging configuration files for libboost-serialization1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-serialization1.62.0 which isn't installed Purging configuration files for libboost-system1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-system1.62.0 which isn't installed Purging configuration files for libboost-thread1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-thread1.62.0 which isn't installed Purging configuration files for libboost-timer1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libboost-timer1.62.0 which isn't installed dpkg: warning: ignoring request to remove libbpp-core2v5 which isn't installed dpkg: warning: ignoring request to remove libbpp-phyl-omics1v5 which isn't installed dpkg: warning: ignoring request to remove libbpp-phyl9v5 which isn't installed dpkg: warning: ignoring request to remove libbpp-seq-omics1v5 which isn't installed dpkg: warning: ignoring request to remove libbpp-seq9v5 which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libbsf-java which isn't installed dpkg: warning: ignoring request to remove libbytecode-java which isn't installed dpkg: warning: ignoring request to remove libbytes-random-secure-perl which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcaca0 which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcairo-gobject2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcanberra-gtk3-0 which isn't installed dpkg: warning: ignoring request to remove libcanberra-gtk3-module which isn't installed dpkg: warning: ignoring request to remove libcanberra0 which isn't installed dpkg: warning: ignoring request to remove libcapnp-0.5.3 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-always-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed Purging configuration files for libcassie1 (1.0.1+dfsg-3+b1) ... dpkg: warning: ignoring request to remove libcassie1v5 which isn't installed dpkg: warning: ignoring request to remove libcastor-core-java which isn't installed dpkg: warning: ignoring request to remove libcastor-xml-java which isn't installed dpkg: warning: ignoring request to remove libcbf0 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcdparanoia0:amd64 (3.10.2+debian-11) ... dpkg: warning: ignoring request to remove libcdt5 which isn't installed Purging configuration files for libcfitsio2:amd64 (3.370-2+deb8u1) ... dpkg: warning: ignoring request to remove libcfitsio5 which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-session-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libcilkrts5 which isn't installed dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-load-perl which isn't installed dpkg: warning: ignoring request to remove libclass-load-xs-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libcloog-isl4 which isn't installed dpkg: warning: ignoring request to remove libcneartree5 which isn't installed dpkg: warning: ignoring request to remove libcofoja-java which isn't installed dpkg: warning: ignoring request to remove libcolamd2 which isn't installed Purging configuration files for libcolamd2.8.0:amd64 (1:4.2.1-3) ... dpkg: warning: ignoring request to remove libcolord2 which isn't installed dpkg: warning: ignoring request to remove libcolorhug2 which isn't installed dpkg: warning: ignoring request to remove libcolt-free-java which isn't installed dpkg: warning: ignoring request to remove libcommon-sense-perl which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections4-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-configuration-java which isn't installed dpkg: warning: ignoring request to remove libcommons-dbcp-java which isn't installed dpkg: warning: ignoring request to remove libcommons-discovery-java which isn't installed dpkg: warning: ignoring request to remove libcommons-httpclient-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-math-java which isn't installed dpkg: warning: ignoring request to remove libcommons-math3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-net-java which isn't installed dpkg: warning: ignoring request to remove libcommons-net2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcommons-pool-java which isn't installed dpkg: warning: ignoring request to remove libconcurrent-java which isn't installed dpkg: warning: ignoring request to remove libconfig-general-perl which isn't installed dpkg: warning: ignoring request to remove libconfig-inifiles-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libcpan-changes-perl which isn't installed dpkg: warning: ignoring request to remove libcpan-meta-perl which isn't installed dpkg: warning: ignoring request to remove libcqrlib2 which isn't installed dpkg: warning: ignoring request to remove libcr0 which isn't installed dpkg: warning: ignoring request to remove libcroco3 which isn't installed dpkg: warning: ignoring request to remove libcrypt-random-seed-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libcrypto++6 which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcupsfilters1 which isn't installed dpkg: warning: ignoring request to remove libcupsimage2 which isn't installed dpkg: warning: ignoring request to remove libcurl3 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcvector2 which isn't installed dpkg: warning: ignoring request to remove libdata-dumper-simple-perl which isn't installed dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libdata-perl-perl which isn't installed dpkg: warning: ignoring request to remove libdata-section-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-xs-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdbus-java which isn't installed dpkg: warning: ignoring request to remove libdconf1 which isn't installed dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-globaldestruction-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-lexalias-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-overloadinfo-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-partialdump-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed dpkg: warning: ignoring request to remove libdirectfb-1.2-9 which isn't installed dpkg: warning: ignoring request to remove libdisorder0 which isn't installed dpkg: warning: ignoring request to remove libdist-checkconflicts-perl which isn't installed Purging configuration files for libdivsufsort3:amd64 (2.0.1-2) ... dpkg: warning: ignoring request to remove libdjvulibre-text which isn't installed dpkg: warning: ignoring request to remove libdjvulibre21 which isn't installed Purging configuration files for libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libdns-export162 which isn't installed dpkg: warning: ignoring request to remove libdom4j-java which isn't installed dpkg: warning: ignoring request to remove libdouble-conversion1 which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdsdp-5.8gf which isn't installed dpkg: warning: ignoring request to remove libecpg6 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libegl1-mesa which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed Purging configuration files for libelfg0:amd64 (0.8.13-5) ... dpkg: warning: ignoring request to remove libelk0 which isn't installed dpkg: warning: ignoring request to remove libemail-date-format-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libenv-path-perl which isn't installed dpkg: warning: ignoring request to remove libepoxy0 which isn't installed dpkg: warning: ignoring request to remove liberfa1 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libev-perl which isn't installed dpkg: warning: ignoring request to remove libeval-closure-perl which isn't installed dpkg: warning: ignoring request to remove libevdev2 which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexif12 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libf2j-java which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed Purging configuration files for libfakeroot:amd64 (1.21-3.1) ... dpkg: warning: ignoring request to remove libfann2 which isn't installed dpkg: warning: ignoring request to remove libfastahack0 which isn't installed dpkg: warning: ignoring request to remove libfastutil-java which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libffindex0 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libfile-basedir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-chdir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-copy-link-perl which isn't installed dpkg: warning: ignoring request to remove libfile-copy-recursive-perl which isn't installed dpkg: warning: ignoring request to remove libfile-desktopentry-perl which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfile-find-rule-perl which isn't installed dpkg: warning: ignoring request to remove libfile-grep-perl which isn't installed dpkg: warning: ignoring request to remove libfile-homedir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-mimeinfo-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurper-perl which isn't installed dpkg: warning: ignoring request to remove libfile-stripnondeterminism-perl which isn't installed dpkg: warning: ignoring request to remove libfile-which-perl which isn't installed dpkg: warning: ignoring request to remove libfindbin-libs-perl which isn't installed dpkg: warning: ignoring request to remove libflac8 which isn't installed dpkg: warning: ignoring request to remove libflite1 which isn't installed dpkg: warning: ignoring request to remove libfltk-images1.3 which isn't installed dpkg: warning: ignoring request to remove libfltk1.3 which isn't installed dpkg: warning: ignoring request to remove libfml0 which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfont-ttf-perl which isn't installed dpkg: warning: ignoring request to remove libfontbox-java which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfop-java which isn't installed Purging configuration files for libfreecontact0 (1.0.21-3+b1) ... dpkg: warning: ignoring request to remove libfreecontact0v5 which isn't installed dpkg: warning: ignoring request to remove libfreehep-export-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-graphics2d-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-graphicsio-emf-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-graphicsio-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-graphicsio-pdf-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-graphicsio-ps-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-graphicsio-svg-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-graphicsio-swf-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-graphicsio-tests-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-io-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-swing-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-util-java which isn't installed dpkg: warning: ignoring request to remove libfreehep-xml-java which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libftgl2 which isn't installed dpkg: warning: ignoring request to remove libfuse2 which isn't installed dpkg: warning: ignoring request to remove libg20 which isn't installed dpkg: warning: ignoring request to remove libgail-common which isn't installed dpkg: warning: ignoring request to remove libgail18 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed dpkg: warning: ignoring request to remove libgc1c2 which isn't installed dpkg: warning: ignoring request to remove libgcc-4.9-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-6-dev which isn't installed dpkg: warning: ignoring request to remove libgd-graph-perl which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd-svg-perl which isn't installed dpkg: warning: ignoring request to remove libgd-text-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed Purging configuration files for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgenome-1.3-0v5 which isn't installed dpkg: warning: ignoring request to remove libgenometools0 which isn't installed dpkg: warning: ignoring request to remove libgetopt-euclid-perl which isn't installed dpkg: warning: ignoring request to remove libgetopt-java which isn't installed dpkg: warning: ignoring request to remove libgetopt-long-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libgetopt-simple-perl which isn't installed dpkg: warning: ignoring request to remove libgettextpo-dev which isn't installed dpkg: warning: ignoring request to remove libgettextpo0 which isn't installed Purging configuration files for libgflags2 (2.0-2.1) ... dpkg: warning: ignoring request to remove libgflags2v5 which isn't installed dpkg: warning: ignoring request to remove libgfortran-4.9-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran-6-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libghemical-data which isn't installed dpkg: warning: ignoring request to remove libghemical5v5 which isn't installed Purging configuration files for libgif4:amd64 (4.1.6-11+deb8u1) ... dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgkarrays1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... dpkg: warning: ignoring request to remove libgl1-mesa-glx which isn't installed Purging configuration files for libglade2-0:amd64 (1:2.6.4-2) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglew1.10:amd64 (1.10.0-3) ... dpkg: warning: ignoring request to remove libglew2.0 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libglpk-java which isn't installed Purging configuration files for libglpk36:amd64 (4.55-1) ... dpkg: warning: ignoring request to remove libglpk40 which isn't installed Purging configuration files for libglu1-mesa:amd64 (9.0.0-2.1) ... dpkg: warning: ignoring request to remove libgmp-dev which isn't installed dpkg: warning: ignoring request to remove libgmpxx4ldbl which isn't installed dpkg: warning: ignoring request to remove libgnuinet-java which isn't installed dpkg: warning: ignoring request to remove libgnumail-java which isn't installed dpkg: warning: ignoring request to remove libgnustep-base1.24 which isn't installed dpkg: warning: ignoring request to remove libgnustep-dl2-0d which isn't installed Purging configuration files for libgnustep-gui0.24 (0.24.0-3) ... Purging configuration files for libgnustep-gui0.25 (0.25.0-4+b1) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... dpkg: warning: ignoring request to remove libgo-perl which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgoogle-glog0 (0.3.3-2) ... dpkg: warning: ignoring request to remove libgoogle-glog0v5 which isn't installed dpkg: warning: ignoring request to remove libgphoto2-6 which isn't installed dpkg: warning: ignoring request to remove libgphoto2-l10n which isn't installed Purging configuration files for libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... dpkg: warning: ignoring request to remove libgphoto2-port12 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libgraph-readwrite-perl which isn't installed dpkg: warning: ignoring request to remove libgraphics-colornames-perl which isn't installed dpkg: warning: ignoring request to remove libgraphics-colorobject-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libgromacs2 which isn't installed dpkg: warning: ignoring request to remove libgs9 which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed dpkg: warning: ignoring request to remove libgsasl7 which isn't installed dpkg: warning: ignoring request to remove libgsl-dev which isn't installed Purging configuration files for libgsl0ldbl (1.16+dfsg-2) ... dpkg: warning: ignoring request to remove libgsl2 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... dpkg: warning: ignoring request to remove libgstreamer-plugins-base1.0-0 which isn't installed dpkg: warning: ignoring request to remove libgstreamer1.0-0 which isn't installed Purging configuration files for libgtextutils0:amd64 (0.7-2) ... dpkg: warning: ignoring request to remove libgtextutils0v5 which isn't installed Purging configuration files for libgtk-3-0:amd64 (3.22.11-1) ... dpkg: warning: ignoring request to remove libgtk-3-bin which isn't installed Purging configuration files for libgtk-3-common (3.22.11-1) ... Purging configuration files for libgtk2.0-0:amd64 (2.24.31-2) ... dpkg: warning: ignoring request to remove libgtk2.0-bin which isn't installed Purging configuration files for libgtk2.0-common (2.24.31-2) ... dpkg: warning: ignoring request to remove libgtkglext1 which isn't installed dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed dpkg: warning: ignoring request to remove libguard-perl which isn't installed dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libgudev-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libgusb2 which isn't installed Purging configuration files for libgvc6 (2.38.0-17) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libgzstream0 which isn't installed dpkg: warning: ignoring request to remove libhamcrest-java which isn't installed dpkg: warning: ignoring request to remove libharfbuzz-icu0 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhat-trie0 which isn't installed dpkg: warning: ignoring request to remove libhdf5-100 which isn't installed Purging configuration files for libhdf5-8:amd64 (1.8.13+docs-15+deb8u1) ... dpkg: warning: ignoring request to remove libhdf5-cpp-100 which isn't installed dpkg: warning: ignoring request to remove libheap-perl which isn't installed dpkg: warning: ignoring request to remove libhmsbeagle-java which isn't installed Purging configuration files for libhmsbeagle1 (2.1.2-1) ... dpkg: warning: ignoring request to remove libhmsbeagle1v5 which isn't installed Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libhpdf-2.2.1 which isn't installed dpkg: warning: ignoring request to remove libhsqldb-java which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhts1 which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libhttpmime-java which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove libibatis-java which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libice-dev which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu-dev which isn't installed Purging configuration files for libicu52:amd64 (52.1-8+deb8u7) ... dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libieee1284-3 which isn't installed dpkg: warning: ignoring request to remove libijs-0.35 which isn't installed dpkg: warning: ignoring request to remove libilmbase12 which isn't installed Purging configuration files for libilmbase6:amd64 (1.0.1-6.1) ... dpkg: warning: ignoring request to remove libimport-into-perl which isn't installed dpkg: warning: ignoring request to remove libindirect-perl which isn't installed dpkg: warning: ignoring request to remove libinput-bin which isn't installed dpkg: warning: ignoring request to remove libinput10 which isn't installed dpkg: warning: ignoring request to remove libint1 which isn't installed dpkg: warning: ignoring request to remove libio-all-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libipc-shareable-perl which isn't installed dpkg: warning: ignoring request to remove libipc-sharelite-perl which isn't installed dpkg: warning: ignoring request to remove libipc-system-simple-perl which isn't installed Purging configuration files for libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove libisc-export160 which isn't installed Purging configuration files for libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisl10:amd64 (0.12.2-2) ... dpkg: warning: ignoring request to remove libisl15 which isn't installed dpkg: warning: ignoring request to remove libisorelax-java which isn't installed dpkg: warning: ignoring request to remove libitext-java which isn't installed dpkg: warning: ignoring request to remove libitext1-java which isn't installed dpkg: warning: ignoring request to remove libitext5-java which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libj2ssh-java which isn't installed dpkg: warning: ignoring request to remove libjaba-client-java which isn't installed dpkg: warning: ignoring request to remove libjam-java which isn't installed dpkg: warning: ignoring request to remove libjargs-java which isn't installed dpkg: warning: ignoring request to remove libjas-plotter-java which isn't installed Purging configuration files for libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... dpkg: warning: ignoring request to remove libjava-xmlbuilder-java which isn't installed dpkg: warning: ignoring request to remove libjaxen-java which isn't installed dpkg: warning: ignoring request to remove libjaxp1.3-java which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjbig2dec0 which isn't installed dpkg: warning: ignoring request to remove libjbzip2-java which isn't installed dpkg: warning: ignoring request to remove libjcode-pm-perl which isn't installed dpkg: warning: ignoring request to remove libjcommon-java which isn't installed dpkg: warning: ignoring request to remove libjdom1-java which isn't installed dpkg: warning: ignoring request to remove libjebl2-java which isn't installed dpkg: warning: ignoring request to remove libjellyfish-2.0-2 which isn't installed dpkg: warning: ignoring request to remove libjemalloc1 which isn't installed dpkg: warning: ignoring request to remove libjets3t-java which isn't installed dpkg: warning: ignoring request to remove libjgoodies-common-java which isn't installed dpkg: warning: ignoring request to remove libjgoodies-forms-java which isn't installed dpkg: warning: ignoring request to remove libjlapack-java which isn't installed dpkg: warning: ignoring request to remove libjline-java which isn't installed dpkg: warning: ignoring request to remove libjmol-java which isn't installed dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed dpkg: warning: ignoring request to remove libjs-es5-shim which isn't installed dpkg: warning: ignoring request to remove libjs-highlight.js which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-datatables which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-metadata which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-tablesorter which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-4) ... dpkg: warning: ignoring request to remove libjs-json which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-modernizr which isn't installed dpkg: warning: ignoring request to remove libjs-mootools which isn't installed dpkg: warning: ignoring request to remove libjs-prototype which isn't installed dpkg: warning: ignoring request to remove libjs-scriptaculous which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libjsch-java which isn't installed Purging configuration files for libjson-c2:amd64 (0.11-4) ... dpkg: warning: ignoring request to remove libjson-glib-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libjson-glib-1.0-common which isn't installed dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libjson-xs-perl which isn't installed Purging configuration files for libjsoncpp0 (0.6.0~rc2-3.1) ... dpkg: warning: ignoring request to remove libjsoncpp1 which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove libjswingreader-java which isn't installed dpkg: warning: ignoring request to remove libjung-free-java which isn't installed dpkg: warning: ignoring request to remove libjxr-tools which isn't installed dpkg: warning: ignoring request to remove libjxr0 which isn't installed dpkg: warning: ignoring request to remove libjzlib-java which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkdf5-2 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkpathsea6 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libkyotocabinet16v5 which isn't installed dpkg: warning: ignoring request to remove liblapack-dev which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblapacke which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblexical-sealrequirehints-perl which isn't installed dpkg: warning: ignoring request to remove liblist-allutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-someutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-utilsby-perl which isn't installed Purging configuration files for libllvm3.5:amd64 (1:3.5-10) ... dpkg: warning: ignoring request to remove libllvm3.9 which isn't installed dpkg: warning: ignoring request to remove liblog-dispatch-perl which isn't installed dpkg: warning: ignoring request to remove liblog-log4perl-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed Purging configuration files for liblog4cpp5 (1.0-4) ... dpkg: warning: ignoring request to remove liblog4cpp5v5 which isn't installed dpkg: warning: ignoring request to remove liblog4j1.2-java which isn't installed dpkg: warning: ignoring request to remove liblqr-1-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libltdl-dev which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove liblua5.1-0 which isn't installed dpkg: warning: ignoring request to remove liblua5.2-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove liblzma-dev which isn't installed dpkg: warning: ignoring request to remove liblzo2-2 which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.30-1+deb9u3) ... Purging configuration files for libmagickcore-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... dpkg: warning: ignoring request to remove libmagickcore-6.q16-3 which isn't installed dpkg: warning: ignoring request to remove libmagickcore-6.q16-3-extra which isn't installed Purging configuration files for libmagickwand-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... dpkg: warning: ignoring request to remove libmagickwand-6.q16-3 which isn't installed dpkg: warning: ignoring request to remove libmail-java which isn't installed dpkg: warning: ignoring request to remove libmail-sendmail-perl which isn't installed dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmailutils5 which isn't installed dpkg: warning: ignoring request to remove libmaloc1 which isn't installed dpkg: warning: ignoring request to remove libmariadbclient18 which isn't installed dpkg: warning: ignoring request to remove libmath-bezier-perl which isn't installed dpkg: warning: ignoring request to remove libmath-derivative-perl which isn't installed dpkg: warning: ignoring request to remove libmath-random-isaac-perl which isn't installed dpkg: warning: ignoring request to remove libmath-random-isaac-xs-perl which isn't installed dpkg: warning: ignoring request to remove libmath-random-mt-perl which isn't installed dpkg: warning: ignoring request to remove libmath-round-perl which isn't installed dpkg: warning: ignoring request to remove libmath-spline-perl which isn't installed dpkg: warning: ignoring request to remove libmath-tamuanova-perl which isn't installed dpkg: warning: ignoring request to remove libmath-vec-perl which isn't installed dpkg: warning: ignoring request to remove libmath-vecstat-perl which isn't installed dpkg: warning: ignoring request to remove libmatthew-debug-java which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto0 which isn't installed dpkg: warning: ignoring request to remove libmbedtls-dev which isn't installed dpkg: warning: ignoring request to remove libmbedtls10 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmems-1.6-1v5 which isn't installed dpkg: warning: ignoring request to remove libmiglayout-java which isn't installed dpkg: warning: ignoring request to remove libmime-lite-perl which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmime-types-perl which isn't installed dpkg: warning: ignoring request to remove libminimap0 which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed dpkg: warning: ignoring request to remove libmng1 which isn't installed dpkg: warning: ignoring request to remove libmnl0 which isn't installed Purging configuration files for libmodule-build-perl (0.422000-1) ... dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-load-conditional-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-pluggable-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-conflicts-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-signature-perl which isn't installed dpkg: warning: ignoring request to remove libmoo-perl which isn't installed dpkg: warning: ignoring request to remove libmoose-perl which isn't installed dpkg: warning: ignoring request to remove libmoox-handlesvia-perl which isn't installed dpkg: warning: ignoring request to remove libmopac7-1gf which isn't installed dpkg: warning: ignoring request to remove libmotif-common which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libmpfr4 which isn't installed Purging configuration files for libmpj-java (0.44+dfsg-3) ... dpkg: warning: ignoring request to remove libmpx2 which isn't installed dpkg: warning: ignoring request to remove libmro-compat-perl which isn't installed dpkg: warning: ignoring request to remove libmsv-java which isn't installed dpkg: warning: ignoring request to remove libmtdev1 which isn't installed dpkg: warning: ignoring request to remove libmtj-java which isn't installed dpkg: warning: ignoring request to remove libmultidimensional-perl which isn't installed dpkg: warning: ignoring request to remove libmuscle-3.7-1 which isn't installed dpkg: warning: ignoring request to remove libmysql-java which isn't installed Purging configuration files for libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... dpkg: warning: ignoring request to remove libnaga-java which isn't installed dpkg: warning: ignoring request to remove libnamespace-autoclean-perl which isn't installed dpkg: warning: ignoring request to remove libnamespace-clean-perl which isn't installed dpkg: warning: ignoring request to remove libnanoxml2-java which isn't installed dpkg: warning: ignoring request to remove libnb-org-openide-util-java which isn't installed dpkg: warning: ignoring request to remove libnb-org-openide-util-lookup-java which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb2 which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb2 which isn't installed dpkg: warning: ignoring request to remove libncbi6 which isn't installed dpkg: warning: ignoring request to remove libncl1 which isn't installed dpkg: warning: ignoring request to remove libncurses5-dev which isn't installed dpkg: warning: ignoring request to remove libncursesw5-dev which isn't installed dpkg: warning: ignoring request to remove libnet-dbus-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnetlib-java which isn't installed dpkg: warning: ignoring request to remove libnetpbm10 which isn't installed Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-sdk-dev which isn't installed dpkg: warning: ignoring request to remove libngs-sdk1 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.2.27-2) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnlopt0 which isn't installed dpkg: warning: ignoring request to remove libnotify4 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libntlm0 which isn't installed dpkg: warning: ignoring request to remove libnucleotidelikelihoodcore0 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libnumber-compare-perl which isn't installed dpkg: warning: ignoring request to remove libnumber-format-perl which isn't installed dpkg: warning: ignoring request to remove libobjc4 which isn't installed Purging configuration files for libogg0:amd64 (1.3.2-1) ... Purging configuration files for liboglappth2 (1.0.0-2) ... dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libopenbabel4v5 which isn't installed dpkg: warning: ignoring request to remove libopenblas-base which isn't installed dpkg: warning: ignoring request to remove libopenexr22 which isn't installed Purging configuration files for libopenexr6:amd64 (1.6.1-8) ... dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed Purging configuration files for libopenjpeg5:amd64 (1:1.5.2-3) ... Purging configuration files for libopenmpi1.6 (1.6.5-9.1+deb8u1) ... dpkg: warning: ignoring request to remove libopenmpi2 which isn't installed dpkg: warning: ignoring request to remove libopus0 which isn't installed dpkg: warning: ignoring request to remove liborc-0.4-0 which isn't installed dpkg: warning: ignoring request to remove liboro-java which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid16 which isn't installed dpkg: warning: ignoring request to remove libpackage-constants-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-deprecationmanager-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed dpkg: warning: ignoring request to remove libpadwalker-perl which isn't installed dpkg: warning: ignoring request to remove libpal-java which isn't installed dpkg: warning: ignoring request to remove libpam-systemd which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpango1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangox-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoxft-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.24+nmu5) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparams-util-perl which isn't installed dpkg: warning: ignoring request to remove libparams-validate-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libparse-yapp-perl which isn't installed dpkg: warning: ignoring request to remove libpath-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpbbam which isn't installed dpkg: warning: ignoring request to remove libpbdata which isn't installed dpkg: warning: ignoring request to remove libpbihdf which isn't installed dpkg: warning: ignoring request to remove libpbseq which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre16-3 which isn't installed dpkg: warning: ignoring request to remove libpcre3-dev which isn't installed dpkg: warning: ignoring request to remove libpcre32-3 which isn't installed Purging configuration files for libpcrecpp0:amd64 (2:8.35-3.3+deb8u4) ... dpkg: warning: ignoring request to remove libpcrecpp0v5 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed Purging configuration files for libperformance0.5 (0.5.0-1) ... dpkg: warning: ignoring request to remove libperl4-corelibs-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libperlio-gzip-perl which isn't installed dpkg: warning: ignoring request to remove libperlio-utf8-strict-perl which isn't installed dpkg: warning: ignoring request to remove libpgtypes3 which isn't installed dpkg: warning: ignoring request to remove libpicard-java which isn't installed dpkg: warning: ignoring request to remove libpipeline1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... dpkg: warning: ignoring request to remove libpng12-dev which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpod-coverage-perl which isn't installed Purging configuration files for libpod-latex-perl (0.61-2) ... dpkg: warning: ignoring request to remove libpod-markdown-perl which isn't installed dpkg: warning: ignoring request to remove libpod-readme-perl which isn't installed dpkg: warning: ignoring request to remove libpolkit-agent-1-0 which isn't installed dpkg: warning: ignoring request to remove libpolkit-backend-1-0 which isn't installed dpkg: warning: ignoring request to remove libpolkit-gobject-1-0 which isn't installed dpkg: warning: ignoring request to remove libpoppler-qt4-4 which isn't installed Purging configuration files for libpoppler46:amd64 (0.26.5-2+deb8u4) ... dpkg: warning: ignoring request to remove libpoppler64 which isn't installed dpkg: warning: ignoring request to remove libpopt0 which isn't installed dpkg: warning: ignoring request to remove libpostgresql-jdbc-java which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed dpkg: warning: ignoring request to remove libpotrace0 which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libprocessing-core-java which isn't installed Purging configuration files for libprocps3:amd64 (2:3.3.9-9+deb8u1) ... dpkg: warning: ignoring request to remove libprotobuf10 which isn't installed Purging configuration files for libprotobuf9:amd64 (2.6.1-1) ... Purging configuration files for libproxy1:amd64 (0.4.11-4+b2) ... dpkg: warning: ignoring request to remove libproxy1v5 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpsm-infinipath1 which isn't installed dpkg: warning: ignoring request to remove libptexenc1 which isn't installed dpkg: warning: ignoring request to remove libpth20 which isn't installed dpkg: warning: ignoring request to remove libpthread-stubs0-dev which isn't installed Purging configuration files for libpulse0:amd64 (10.0-1+deb9u1) ... dpkg: warning: ignoring request to remove libpvm3 which isn't installed dpkg: warning: ignoring request to remove libpython-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython-dev which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2.7 which isn't installed dpkg: warning: ignoring request to remove libpython2.7-dev which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.4-minimal:amd64 (3.4.2-1) ... dpkg-query: no packages found matching pkgname Purging configuration files for libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove libpython3.5-stdlib which isn't installed dpkg: warning: ignoring request to remove libqes0 which isn't installed dpkg: warning: ignoring request to remove libqt4-dbus which isn't installed dpkg: warning: ignoring request to remove libqt4-declarative which isn't installed dpkg: warning: ignoring request to remove libqt4-designer which isn't installed dpkg: warning: ignoring request to remove libqt4-help which isn't installed dpkg: warning: ignoring request to remove libqt4-network which isn't installed dpkg: warning: ignoring request to remove libqt4-opengl which isn't installed dpkg: warning: ignoring request to remove libqt4-script which isn't installed dpkg: warning: ignoring request to remove libqt4-scripttools which isn't installed dpkg: warning: ignoring request to remove libqt4-sql which isn't installed dpkg: warning: ignoring request to remove libqt4-sql-mysql which isn't installed dpkg: warning: ignoring request to remove libqt4-svg which isn't installed dpkg: warning: ignoring request to remove libqt4-test which isn't installed dpkg: warning: ignoring request to remove libqt4-xml which isn't installed dpkg: warning: ignoring request to remove libqt4-xmlpatterns which isn't installed dpkg: warning: ignoring request to remove libqt5core5a which isn't installed dpkg: warning: ignoring request to remove libqt5dbus5 which isn't installed Purging configuration files for libqt5gui5:amd64 (5.7.1+dfsg-3+deb9u2) ... dpkg: warning: ignoring request to remove libqt5network5 which isn't installed dpkg: warning: ignoring request to remove libqt5printsupport5 which isn't installed dpkg: warning: ignoring request to remove libqt5svg5 which isn't installed dpkg: warning: ignoring request to remove libqt5widgets5 which isn't installed dpkg: warning: ignoring request to remove libqt5xml5 which isn't installed dpkg: warning: ignoring request to remove libqtassistantclient4 which isn't installed dpkg: warning: ignoring request to remove libqtcore4 which isn't installed dpkg: warning: ignoring request to remove libqtdbus4 which isn't installed dpkg: warning: ignoring request to remove libqtgui4 which isn't installed dpkg: warning: ignoring request to remove libqtwebkit4 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove librdp-taxonomy-tree-java which isn't installed dpkg: warning: ignoring request to remove libreadline-dev which isn't installed dpkg: warning: ignoring request to remove libreadline5 which isn't installed dpkg: warning: ignoring request to remove libreadonly-perl which isn't installed dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove libregexp-java which isn't installed dpkg: warning: ignoring request to remove librelaxng-datatype-java which isn't installed Purging configuration files for librelion-1.3-1:amd64 (1.3+dfsg-2) ... dpkg: warning: ignoring request to remove librelion-1.4-1 which isn't installed dpkg: warning: ignoring request to remove librest-0.7-0 which isn't installed dpkg: warning: ignoring request to remove librg-exception-perl which isn't installed dpkg: warning: ignoring request to remove librg-reprof-bundle-perl which isn't installed dpkg: warning: ignoring request to remove librg-utils-perl which isn't installed dpkg: warning: ignoring request to remove librhino-java which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove librsvg2-2 which isn't installed dpkg: warning: ignoring request to remove librsvg2-common which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed Purging configuration files for libruby2.1:amd64 (2.1.5-2+deb8u3) ... dpkg: warning: ignoring request to remove libruby2.3 which isn't installed dpkg: warning: ignoring request to remove libsam-java which isn't installed dpkg: warning: ignoring request to remove libsane which isn't installed Purging configuration files for libsane-common (1.0.25-4.1) ... Removing directory /etc/sane.d/ ... Purging configuration files for libsane-extras:amd64 (1.0.22.4) ... dpkg: warning: ignoring request to remove libsane-extras-common which isn't installed dpkg: warning: ignoring request to remove libsaxon-java which isn't installed dpkg: warning: ignoring request to remove libsaxonb-java which isn't installed dpkg: warning: ignoring request to remove libsaxonhe-java which isn't installed dpkg: warning: ignoring request to remove libsc-data which isn't installed dpkg: warning: ignoring request to remove libsc7v5 which isn't installed dpkg: warning: ignoring request to remove libscalar-list-utils-perl which isn't installed dpkg: warning: ignoring request to remove libsctp1 which isn't installed dpkg: warning: ignoring request to remove libsdl1.2debian which isn't installed dpkg: warning: ignoring request to remove libsdsl3 which isn't installed Purging configuration files for libsensors4:amd64 (1:3.4.0-4) ... dpkg: warning: ignoring request to remove libservlet2.5-java which isn't installed dpkg: warning: ignoring request to remove libservlet3.1-java which isn't installed dpkg: warning: ignoring request to remove libset-intspan-perl which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsm-dev which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsmithwaterman0 which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsndfile1 which isn't installed dpkg: warning: ignoring request to remove libsnp-sites1 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsoftware-license-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed dpkg: warning: ignoring request to remove libsoup-gnome2.4-1 which isn't installed dpkg: warning: ignoring request to remove libsoup2.4-1 which isn't installed dpkg: warning: ignoring request to remove libspiffy-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove libsprng2 which isn't installed dpkg: warning: ignoring request to remove libsqlclient1.7 which isn't installed dpkg: warning: ignoring request to remove libsqlite0 which isn't installed dpkg: warning: ignoring request to remove libsquizz which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... dpkg: warning: ignoring request to remove libssw-java which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed Purging configuration files for libstaden-read1 (1.13.7-1) ... dpkg: warning: ignoring request to remove libstaden-read11 which isn't installed dpkg: warning: ignoring request to remove libstatistics-basic-perl which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstdc++-4.9-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-6-dev which isn't installed dpkg: warning: ignoring request to remove libsteptalk0 which isn't installed dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libstring-approx-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig4 which isn't installed dpkg: warning: ignoring request to remove libsuperlu5 which isn't installed dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libsvm3 which isn't installed dpkg: warning: ignoring request to remove libswing-layout-java which isn't installed dpkg: warning: ignoring request to remove libsynctex1 which isn't installed dpkg: warning: ignoring request to remove libsys-hostname-long-perl which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtabixpp0 which isn't installed dpkg: warning: ignoring request to remove libtablelayout-java which isn't installed dpkg: warning: ignoring request to remove libtamuanova-0.2 which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove libtbb2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.5 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtcmalloc-minimal4 which isn't installed dpkg: warning: ignoring request to remove libtdb1 which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove libterm-ui-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-file-perl which isn't installed dpkg: warning: ignoring request to remove libtest-files-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-output-perl which isn't installed dpkg: warning: ignoring request to remove libtest-pod-perl which isn't installed dpkg: warning: ignoring request to remove libtest-simple-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtexlua52 which isn't installed dpkg: warning: ignoring request to remove libtexluajit2 which isn't installed dpkg: warning: ignoring request to remove libtext-csv-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-xs-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: warning: ignoring request to remove libtext-format-perl which isn't installed dpkg: warning: ignoring request to remove libtext-glob-perl which isn't installed dpkg: warning: ignoring request to remove libtext-soundex-perl which isn't installed dpkg: warning: ignoring request to remove libtext-template-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtheora0 which isn't installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtinfo-dev which isn't installed Purging configuration files for libtinyxml2.6.2:amd64 (2.6.2-2) ... dpkg: warning: ignoring request to remove libtinyxml2.6.2v5 which isn't installed dpkg: warning: ignoring request to remove libtk8.5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtmglib3 which isn't installed dpkg: warning: ignoring request to remove libtool which isn't installed dpkg: warning: ignoring request to remove libtre5 which isn't installed dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed Purging configuration files for libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... dpkg: warning: ignoring request to remove libtype-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed dpkg: warning: ignoring request to remove libtypes-serialiser-perl which isn't installed dpkg: warning: ignoring request to remove libubsan0 which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed dpkg: warning: ignoring request to remove libunicode-utf8-perl which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove libunixsocket-java which isn't installed dpkg: warning: ignoring request to remove libunwind8 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libusb-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libutempter0 which isn't installed dpkg: warning: ignoring request to remove libv4l-0 which isn't installed dpkg: warning: ignoring request to remove libv4lconvert0 which isn't installed dpkg: warning: ignoring request to remove libvamsas-client-java which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed dpkg: warning: ignoring request to remove libvcflib-tools which isn't installed dpkg: warning: ignoring request to remove libvcflib1 which isn't installed dpkg: warning: ignoring request to remove libvecmath-java which isn't installed dpkg: warning: ignoring request to remove libvibrant6b which isn't installed dpkg: warning: ignoring request to remove libvisual-0.4-0 which isn't installed dpkg: warning: ignoring request to remove libvisual-0.4-plugins which isn't installed dpkg: warning: ignoring request to remove libvm-ec2-perl which isn't installed dpkg: warning: ignoring request to remove libvorbis0a which isn't installed dpkg: warning: ignoring request to remove libvorbisenc2 which isn't installed dpkg: warning: ignoring request to remove libvorbisfile3 which isn't installed Purging configuration files for libvpx1:amd64 (1.3.0-3+deb8u1) ... dpkg: warning: ignoring request to remove libvte-common which isn't installed dpkg: warning: ignoring request to remove libvte9 which isn't installed dpkg: warning: ignoring request to remove libwacom-bin which isn't installed dpkg: warning: ignoring request to remove libwacom-common which isn't installed dpkg: warning: ignoring request to remove libwacom2 which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-cursor0 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1-mesa which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed dpkg: warning: ignoring request to remove libwcs5 which isn't installed Purging configuration files for libwebp5:amd64 (0.4.1-1.2+b2) ... dpkg: warning: ignoring request to remove libwebp6 which isn't installed Purging configuration files for libwebpdemux1:amd64 (0.4.1-1.2+b2) ... dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed Purging configuration files for libwebpmux1:amd64 (0.4.1-1.2+b2) ... dpkg: warning: ignoring request to remove libwebpmux2 which isn't installed dpkg: warning: ignoring request to remove libwmf0.2-7 which isn't installed Purging configuration files for libwrap0:amd64 (7.6.q-26) ... dpkg: warning: ignoring request to remove libwsdl4j-java which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed Purging configuration files for libwxbase3.0-0:amd64 (3.0.2-1+b1) ... dpkg: warning: ignoring request to remove libwxbase3.0-0v5 which isn't installed Purging configuration files for libwxgtk3.0-0:amd64 (3.0.2-1+b1) ... dpkg: warning: ignoring request to remove libwxgtk3.0-0v5 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-dev which isn't installed dpkg: warning: ignoring request to remove libx11-doc which isn't installed dpkg: warning: ignoring request to remove libx11-protocol-perl which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxalan2-java which isn't installed dpkg: warning: ignoring request to remove libxau-dev which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed Purging configuration files for libxcb-icccm4:amd64 (0.4.1-1) ... dpkg: warning: ignoring request to remove libxcb-image0 which isn't installed dpkg: warning: ignoring request to remove libxcb-keysyms1 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed Purging configuration files for libxcb-render-util0:amd64 (0.3.9-1) ... dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-util0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xinerama0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xkb1 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcb1-dev which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp-dev which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxdot4 which isn't installed dpkg: warning: ignoring request to remove libxerces-c3.1 which isn't installed dpkg: warning: ignoring request to remove libxerces2-java which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxfont1 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon-x11-0 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon0 which isn't installed dpkg: warning: ignoring request to remove libxm4 which isn't installed dpkg: warning: ignoring request to remove libxml-checker-perl which isn't installed dpkg: warning: ignoring request to remove libxml-commons-external-java which isn't installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-7) ... dpkg: warning: while removing libxml-commons-resolver1.1-java, directory '/etc/xml' not empty so not removed dpkg: warning: ignoring request to remove libxml-dom-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-filter-buffertext-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (0.99+dfsg-2) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlgraphics-commons-java which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxom-java which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxpp2-java which isn't installed dpkg: warning: ignoring request to remove libxpp3-java which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed Purging configuration files for libxss1:amd64 (1:1.2.2-1) ... dpkg: warning: ignoring request to remove libxt-dev which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed Purging configuration files for libxtables10 (1.4.21-2+b1) ... dpkg: warning: ignoring request to remove libxtables12 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxv1 which isn't installed dpkg: warning: ignoring request to remove libxxf86dga1 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libxz-java which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-tiny-perl which isn't installed Purging configuration files for libzeep3.0 (3.0.2-1+b2) ... dpkg: warning: ignoring request to remove libzeep3.0v5 which isn't installed dpkg: warning: ignoring request to remove libzeus-jscl-java which isn't installed dpkg: warning: ignoring request to remove libzstd1 which isn't installed dpkg: warning: ignoring request to remove libzzip-0-13 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove lksctp-tools which isn't installed Purging configuration files for lmodern (2.004.5-3) ... dpkg: warning: ignoring request to remove logol-bin which isn't installed dpkg: warning: ignoring request to remove loki which isn't installed dpkg: warning: ignoring request to remove ltrsift which isn't installed Purging configuration files for lua-filesystem:amd64 (1.6.3-1) ... dpkg: warning: ignoring request to remove lua-lpeg which isn't installed Purging configuration files for lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Purging configuration files for lynx (2.8.9dev11-1) ... Purging configuration files for lynx-common (2.8.9dev11-1) ... dpkg: warning: ignoring request to remove lynx-cur which isn't installed dpkg: warning: ignoring request to remove m4 which isn't installed dpkg: warning: ignoring request to remove macs which isn't installed Purging configuration files for macsyfinder (1.0.2-3) ... dpkg: warning: ignoring request to remove maffilter which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove mailutils which isn't installed dpkg: warning: ignoring request to remove mailutils-common which isn't installed dpkg: warning: ignoring request to remove make which isn't installed Purging configuration files for man-db (2.7.6.1-2) ... Removing catpages as well as /var/cache/man hierarchy. dpkg: warning: ignoring request to remove manpages-dev which isn't installed dpkg: warning: ignoring request to remove mapdamage which isn't installed dpkg: warning: ignoring request to remove mapsembler2 which isn't installed dpkg: warning: ignoring request to remove maq which isn't installed dpkg: warning: ignoring request to remove maqview which isn't installed Purging configuration files for mariadb-client-10.1 (10.1.45-0+deb9u1) ... dpkg: warning: ignoring request to remove mariadb-client-core-10.1 which isn't installed Purging configuration files for mariadb-common (10.1.45-0+deb9u1) ... dpkg: warning: ignoring request to remove mash which isn't installed dpkg: warning: ignoring request to remove massxpert which isn't installed dpkg: warning: ignoring request to remove massxpert-data which isn't installed dpkg: warning: ignoring request to remove mauve-aligner which isn't installed dpkg: warning: ignoring request to remove mcl which isn't installed dpkg: warning: ignoring request to remove med-bio which isn't installed Purging configuration files for med-config (3.0.1) ... dpkg: warning: ignoring request to remove med-tasks which isn't installed dpkg: warning: ignoring request to remove melting which isn't installed Purging configuration files for menu (2.1.47+b1) ... dpkg: warning: ignoring request to remove meryl which isn't installed dpkg: warning: ignoring request to remove mesa-utils which isn't installed dpkg: warning: ignoring request to remove metaphlan2 which isn't installed Purging configuration files for metaphlan2-data (2.6.0+ds-2) ... Purging configuration files for metastudent (2.0.1-4) ... dpkg: warning: ignoring request to remove metastudent-data which isn't installed dpkg: warning: ignoring request to remove metastudent-data-2 which isn't installed dpkg: warning: ignoring request to remove mhap which isn't installed dpkg: warning: ignoring request to remove microbegps which isn't installed dpkg: warning: ignoring request to remove microbiomeutil which isn't installed dpkg: warning: ignoring request to remove microbiomeutil-data which isn't installed Purging configuration files for mime-support (3.60) ... dpkg: warning: ignoring request to remove minia which isn't installed dpkg: warning: ignoring request to remove miniasm which isn't installed dpkg: warning: ignoring request to remove minimap which isn't installed dpkg: warning: ignoring request to remove mipe which isn't installed dpkg: warning: ignoring request to remove mira-assembler which isn't installed Purging configuration files for mira-rfam-12s-rrna (4.9.6-2) ... dpkg: warning: ignoring request to remove mknfonts.tool which isn't installed dpkg: warning: ignoring request to remove mlv-smile which isn't installed Purging configuration files for mothur (1.38.1.1-1) ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove mpqc which isn't installed dpkg: warning: ignoring request to remove mrbayes which isn't installed Purging configuration files for mrs (6.0.5+dfsg-2+b2) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove murasaki which isn't installed dpkg: warning: ignoring request to remove murasaki-common which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed dpkg: warning: ignoring request to remove mysql-client which isn't installed Purging configuration files for mysql-common (5.8+1.0.2) ... dpkg: warning: ignoring request to remove nanopolish which isn't installed dpkg: warning: ignoring request to remove nast-ier which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Purging configuration files for ncbi-entrez-direct (6.10.20170123+ds-1) ... dpkg: warning: ignoring request to remove ncbi-epcr which isn't installed dpkg: warning: ignoring request to remove ncbi-seg which isn't installed dpkg: warning: ignoring request to remove ncbi-tools-bin which isn't installed dpkg: warning: ignoring request to remove ncbi-tools-x11 which isn't installed dpkg: warning: ignoring request to remove ncl-tools which isn't installed dpkg: warning: ignoring request to remove ncoils which isn't installed dpkg: warning: ignoring request to remove neobio which isn't installed Purging configuration files for netbase (5.4) ... dpkg: warning: ignoring request to remove netpbm which isn't installed dpkg: warning: ignoring request to remove njplot which isn't installed dpkg: warning: ignoring request to remove norsnet which isn't installed dpkg: warning: ignoring request to remove norsp which isn't installed Purging configuration files for notification-daemon (3.20.0-1+b1) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... dpkg: warning: ignoring request to remove openjdk-8-jre which isn't installed Purging configuration files for openjdk-8-jre-headless:amd64 (8u252-b09-1~deb9u1) ... Purging configuration files for openmpi-bin (2.0.2-2) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed dpkg: warning: ignoring request to remove openms-common which isn't installed Purging configuration files for openssh-client (1:7.4p1-10+deb9u7) ... Purging configuration files for openssl (1.1.0l-1~deb9u1) ... dpkg: warning: while removing openssl, directory '/etc/ssl/private' not empty so not removed dpkg: warning: ignoring request to remove paraclu which isn't installed dpkg: warning: ignoring request to remove parafly which isn't installed Purging configuration files for parallel (20161222-1) ... dpkg: warning: ignoring request to remove parsinsert which isn't installed dpkg: warning: ignoring request to remove parsnp which isn't installed dpkg: warning: ignoring request to remove patch which isn't installed dpkg: warning: ignoring request to remove pbalign which isn't installed dpkg: warning: ignoring request to remove pbbamtools which isn't installed dpkg: warning: ignoring request to remove pbbarcode which isn't installed dpkg: warning: ignoring request to remove pbdagcon which isn't installed dpkg: warning: ignoring request to remove pbgenomicconsensus which isn't installed dpkg: warning: ignoring request to remove pbh5tools which isn't installed dpkg: warning: ignoring request to remove pbhoney which isn't installed dpkg: warning: ignoring request to remove pbjelly which isn't installed dpkg: warning: ignoring request to remove pbsim which isn't installed dpkg: warning: ignoring request to remove pbsuite which isn't installed dpkg: warning: ignoring request to remove pdb2pqr which isn't installed Purging configuration files for perl (5.24.1-3+deb9u7) ... Purging configuration files for perl-doc (5.24.1-3+deb9u7) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove perlprimer which isn't installed dpkg: warning: ignoring request to remove perm which isn't installed dpkg: warning: ignoring request to remove phipack which isn't installed dpkg: warning: ignoring request to remove phybin which isn't installed Purging configuration files for phylip (1:3.696+dfsg-5) ... dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove physamp which isn't installed dpkg: warning: ignoring request to remove phyutility which isn't installed dpkg: warning: ignoring request to remove picard-tools which isn't installed dpkg: warning: ignoring request to remove piler which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed dpkg: warning: ignoring request to remove pirs which isn't installed dpkg: warning: ignoring request to remove pirs-profiles which isn't installed Purging configuration files for pkg-config (0.29-4+b1) ... dpkg: warning: ignoring request to remove placnet which isn't installed dpkg: warning: ignoring request to remove plasmidomics which isn't installed dpkg: warning: ignoring request to remove plast which isn't installed dpkg: warning: ignoring request to remove plink which isn't installed dpkg: warning: ignoring request to remove plink1.9 which isn't installed dpkg: warning: ignoring request to remove plip which isn't installed dpkg: warning: ignoring request to remove po-debconf which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for policykit-1 (0.105-18+deb9u1) ... Purging configuration files for poppler-data (0.4.7-8) ... dpkg: warning: ignoring request to remove populations which isn't installed dpkg: warning: ignoring request to remove poretools which isn't installed Purging configuration files for pp-popularity-contest (1.0.6-2+b4) ... dpkg: warning: ignoring request to remove prank which isn't installed dpkg: warning: ignoring request to remove predictnls which isn't installed dpkg: warning: ignoring request to remove predictprotein which isn't installed Purging configuration files for prerex (6.5.3-1+b2) ... Purging configuration files for preview-latex-style (11.90-1) ... dpkg: warning: ignoring request to remove prime-phylo which isn't installed Purging configuration files for primer3 (2.3.7-3) ... dpkg: warning: ignoring request to remove proalign which isn't installed Purging configuration files for probabel (0.4.5-3+b1) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed dpkg: warning: ignoring request to remove prodigal which isn't installed dpkg: warning: ignoring request to remove profbval which isn't installed dpkg: warning: ignoring request to remove profisis which isn't installed dpkg: warning: ignoring request to remove profnet-bval which isn't installed dpkg: warning: ignoring request to remove profnet-chop which isn't installed dpkg: warning: ignoring request to remove profnet-con which isn't installed dpkg: warning: ignoring request to remove profnet-isis which isn't installed dpkg: warning: ignoring request to remove profnet-md which isn't installed dpkg: warning: ignoring request to remove profnet-norsnet which isn't installed dpkg: warning: ignoring request to remove profnet-prof which isn't installed dpkg: warning: ignoring request to remove profnet-snapfun which isn't installed dpkg: warning: ignoring request to remove profphd which isn't installed dpkg: warning: ignoring request to remove profphd-net which isn't installed dpkg: warning: ignoring request to remove profphd-utils which isn't installed dpkg: warning: ignoring request to remove proftmb which isn't installed dpkg: warning: ignoring request to remove progressivemauve which isn't installed Purging configuration files for prosper (1.00.4+cvs.2007.05.01-4.1) ... dpkg: warning: ignoring request to remove proteinortho which isn't installed Purging configuration files for prottest (3.4.2+dfsg-2) ... dpkg: warning: ignoring request to remove ps2eps which isn't installed Purging configuration files for psmisc (22.21-2.1+b2) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed dpkg: warning: ignoring request to remove pvm which isn't installed dpkg: warning: ignoring request to remove pycorrfit which isn't installed dpkg: warning: ignoring request to remove pymol which isn't installed dpkg: warning: ignoring request to remove pymol-data which isn't installed dpkg: warning: ignoring request to remove pynast which isn't installed dpkg: warning: ignoring request to remove pyqi which isn't installed dpkg: warning: ignoring request to remove pyscanfcs which isn't installed Purging configuration files for python (2.7.13-2) ... dpkg: warning: ignoring request to remove python-alabaster which isn't installed dpkg: warning: ignoring request to remove python-all which isn't installed dpkg: warning: ignoring request to remove python-all-dev which isn't installed dpkg: warning: ignoring request to remove python-antlr which isn't installed dpkg: warning: ignoring request to remove python-astropy which isn't installed dpkg: warning: ignoring request to remove python-avro which isn't installed dpkg: warning: ignoring request to remove python-babel which isn't installed dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed dpkg: warning: ignoring request to remove python-backports-shutil-get-terminal-size which isn't installed dpkg: warning: ignoring request to remove python-ball which isn't installed dpkg: warning: ignoring request to remove python-ballview which isn't installed Purging configuration files for python-biom-format (2.1.5+dfsg-7) ... dpkg: warning: ignoring request to remove python-biopython which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed dpkg: warning: ignoring request to remove python-bs4 which isn't installed dpkg: warning: ignoring request to remove python-cairo which isn't installed dpkg: warning: ignoring request to remove python-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python-chardet which isn't installed dpkg: warning: ignoring request to remove python-click which isn't installed dpkg: warning: ignoring request to remove python-cogent which isn't installed dpkg: warning: ignoring request to remove python-colorama which isn't installed dpkg: warning: ignoring request to remove python-configobj which isn't installed dpkg: warning: ignoring request to remove python-configparser which isn't installed dpkg: warning: ignoring request to remove python-crypto which isn't installed dpkg: warning: ignoring request to remove python-cryptography which isn't installed dpkg: warning: ignoring request to remove python-cvxopt which isn't installed dpkg: warning: ignoring request to remove python-cycler which isn't installed dpkg: warning: ignoring request to remove python-dateutil which isn't installed dpkg: warning: ignoring request to remove python-decorator which isn't installed dpkg: warning: ignoring request to remove python-dendropy which isn't installed dpkg: warning: ignoring request to remove python-dev which isn't installed dpkg: warning: ignoring request to remove python-docutils which isn't installed dpkg: warning: ignoring request to remove python-egenix-mxdatetime which isn't installed dpkg: warning: ignoring request to remove python-egenix-mxtools which isn't installed dpkg: warning: ignoring request to remove python-enum34 which isn't installed dpkg: warning: ignoring request to remove python-funcsigs which isn't installed dpkg: warning: ignoring request to remove python-functools32 which isn't installed dpkg: warning: ignoring request to remove python-future which isn't installed dpkg: warning: ignoring request to remove python-gdata which isn't installed dpkg: warning: ignoring request to remove python-glade2 which isn't installed dpkg: warning: ignoring request to remove python-gmpy which isn't installed dpkg: warning: ignoring request to remove python-gobject-2 which isn't installed dpkg: warning: ignoring request to remove python-gtk2 which isn't installed dpkg: warning: ignoring request to remove python-h5py which isn't installed dpkg: warning: ignoring request to remove python-html5lib which isn't installed dpkg: warning: ignoring request to remove python-htseq which isn't installed dpkg: warning: ignoring request to remove python-idna which isn't installed dpkg: warning: ignoring request to remove python-imagesize which isn't installed dpkg: warning: ignoring request to remove python-imaging which isn't installed dpkg: warning: ignoring request to remove python-intervaltree which isn't installed dpkg: warning: ignoring request to remove python-intervaltree-bio which isn't installed dpkg: warning: ignoring request to remove python-ipaddress which isn't installed dpkg: warning: ignoring request to remove python-ipython which isn't installed dpkg: warning: ignoring request to remove python-ipython-genutils which isn't installed dpkg: warning: ignoring request to remove python-iso8601 which isn't installed dpkg: warning: ignoring request to remove python-jdcal which isn't installed dpkg: warning: ignoring request to remove python-jinja2 which isn't installed dpkg: warning: ignoring request to remove python-joblib which isn't installed dpkg: warning: ignoring request to remove python-kineticstools which isn't installed dpkg: warning: ignoring request to remove python-lmfit which isn't installed dpkg: warning: ignoring request to remove python-lxml which isn't installed dpkg: warning: ignoring request to remove python-mako which isn't installed dpkg: warning: ignoring request to remove python-markupsafe which isn't installed dpkg: warning: ignoring request to remove python-matplotlib which isn't installed Purging configuration files for python-matplotlib-data (2.0.0+dfsg1-2) ... dpkg: warning: ignoring request to remove python-matplotlib-venn which isn't installed dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-mock which isn't installed dpkg: warning: ignoring request to remove python-mpi4py which isn't installed dpkg: warning: ignoring request to remove python-mpmath which isn't installed dpkg: warning: ignoring request to remove python-msgpack which isn't installed dpkg: warning: ignoring request to remove python-multipletau which isn't installed dpkg: warning: ignoring request to remove python-mysqldb which isn't installed dpkg: warning: ignoring request to remove python-networkx which isn't installed dpkg: warning: ignoring request to remove python-nose which isn't installed dpkg: warning: ignoring request to remove python-numexpr which isn't installed dpkg: warning: ignoring request to remove python-numpy which isn't installed dpkg: warning: ignoring request to remove python-openbabel which isn't installed dpkg: warning: ignoring request to remove python-opengl which isn't installed dpkg: warning: ignoring request to remove python-openpyxl which isn't installed dpkg: warning: ignoring request to remove python-openssl which isn't installed dpkg: warning: ignoring request to remove python-pandas which isn't installed dpkg: warning: ignoring request to remove python-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python-pathlib2 which isn't installed dpkg: warning: ignoring request to remove python-patsy which isn't installed dpkg: warning: ignoring request to remove python-pbalign which isn't installed dpkg: warning: ignoring request to remove python-pbbanana which isn't installed dpkg: warning: ignoring request to remove python-pbcommand which isn't installed dpkg: warning: ignoring request to remove python-pbconsensuscore which isn't installed dpkg: warning: ignoring request to remove python-pbcore which isn't installed dpkg: warning: ignoring request to remove python-pbgenomicconsensus which isn't installed dpkg: warning: ignoring request to remove python-pbh5tools which isn't installed Purging configuration files for python-pbr (1.10.0-1) ... dpkg: warning: ignoring request to remove python-pbsuite-utils which isn't installed dpkg: warning: ignoring request to remove python-pexpect which isn't installed dpkg: warning: ignoring request to remove python-pickleshare which isn't installed dpkg: warning: ignoring request to remove python-pil which isn't installed dpkg: warning: ignoring request to remove python-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python-ply which isn't installed dpkg: warning: ignoring request to remove python-pmw which isn't installed dpkg: warning: ignoring request to remove python-prompt-toolkit which isn't installed dpkg: warning: ignoring request to remove python-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python-py which isn't installed dpkg: warning: ignoring request to remove python-pyasn1 which isn't installed dpkg: warning: ignoring request to remove python-pyfits which isn't installed dpkg: warning: ignoring request to remove python-pyglet which isn't installed Purging configuration files for python-pygments (2.2.0+dfsg-1) ... dpkg: warning: ignoring request to remove python-pygraphviz which isn't installed dpkg: warning: ignoring request to remove python-pyparsing which isn't installed dpkg: warning: ignoring request to remove python-pyrex which isn't installed dpkg: warning: ignoring request to remove python-pysam which isn't installed dpkg: warning: ignoring request to remove python-pysqlite2 which isn't installed dpkg: warning: ignoring request to remove python-pytest which isn't installed dpkg: warning: ignoring request to remove python-qcli which isn't installed dpkg: warning: ignoring request to remove python-qt4 which isn't installed dpkg: warning: ignoring request to remove python-renderpm which isn't installed dpkg: warning: ignoring request to remove python-reportlab which isn't installed dpkg: warning: ignoring request to remove python-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python-requests which isn't installed dpkg: warning: ignoring request to remove python-roman which isn't installed dpkg: warning: ignoring request to remove python-rpy2 which isn't installed dpkg: warning: ignoring request to remove python-ruffus which isn't installed dpkg: warning: ignoring request to remove python-scipy which isn't installed dpkg: warning: ignoring request to remove python-seaborn which isn't installed dpkg: warning: ignoring request to remove python-setuptools which isn't installed dpkg: warning: ignoring request to remove python-simplegeneric which isn't installed dpkg: warning: ignoring request to remove python-simplejson which isn't installed dpkg: warning: ignoring request to remove python-singledispatch which isn't installed dpkg: warning: ignoring request to remove python-sip which isn't installed dpkg: warning: ignoring request to remove python-six which isn't installed dpkg: warning: ignoring request to remove python-sklearn which isn't installed dpkg: warning: ignoring request to remove python-sklearn-lib which isn't installed dpkg: warning: ignoring request to remove python-sortedcontainers which isn't installed dpkg: warning: ignoring request to remove python-sphinx which isn't installed dpkg: warning: ignoring request to remove python-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python-sqlalchemy-ext which isn't installed dpkg: warning: ignoring request to remove python-statsmodels which isn't installed dpkg: warning: ignoring request to remove python-statsmodels-lib which isn't installed dpkg: warning: ignoring request to remove python-subprocess32 which isn't installed Purging configuration files for python-support (1.0.15) ... Purging configuration files for python-sympy (1.0-3) ... dpkg: warning: ignoring request to remove python-sympy-doc which isn't installed dpkg: warning: ignoring request to remove python-tables which isn't installed dpkg: warning: ignoring request to remove python-tables-data which isn't installed dpkg: warning: ignoring request to remove python-tables-lib which isn't installed dpkg: warning: ignoring request to remove python-tk which isn't installed dpkg: warning: ignoring request to remove python-traitlets which isn't installed dpkg: warning: ignoring request to remove python-tz which isn't installed dpkg: warning: ignoring request to remove python-urllib3 which isn't installed dpkg: warning: ignoring request to remove python-wcwidth which isn't installed dpkg: warning: ignoring request to remove python-webencodings which isn't installed dpkg: warning: ignoring request to remove python-wxgtk3.0 which isn't installed dpkg: warning: ignoring request to remove python-wxversion which isn't installed dpkg: warning: ignoring request to remove python-xlrd which isn't installed dpkg: warning: ignoring request to remove python-xlwt which isn't installed dpkg: warning: ignoring request to remove python-yaml which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed dpkg: warning: ignoring request to remove python2.7-dev which isn't installed Purging configuration files for python2.7-minimal (2.7.13-2+deb9u3) ... Purging configuration files for python3 (3.5.3-1) ... dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-bz2file which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-cutadapt which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dendropy which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-jdcal which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-nose which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-openpyxl which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pymummer which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pytest which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-screed which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-xopen which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed Purging configuration files for python3.4 (3.4.2-1) ... Purging configuration files for python3.4-minimal (3.4.2-1) ... dpkg: warning: ignoring request to remove python3.5 which isn't installed Purging configuration files for python3.5-minimal (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove qdbus which isn't installed Purging configuration files for qiime (1.8.0+dfsg-4) ... dpkg: warning: ignoring request to remove qiime-data which isn't installed dpkg: warning: ignoring request to remove qt-at-spi which isn't installed dpkg: warning: ignoring request to remove qt5-gtk-platformtheme which isn't installed dpkg: warning: ignoring request to remove qtchooser which isn't installed dpkg: warning: ignoring request to remove qtcore4-l10n which isn't installed dpkg: warning: ignoring request to remove qtltools which isn't installed dpkg: warning: ignoring request to remove qttranslations5-l10n which isn't installed dpkg: warning: ignoring request to remove r-base which isn't installed Purging configuration files for r-base-core (3.3.3-1) ... dpkg: warning: ignoring request to remove r-base-dev which isn't installed dpkg: warning: ignoring request to remove r-base-html which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotate which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationhub which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocinstaller which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biomart which isn't installed dpkg: warning: ignoring request to remove r-bioc-biomformat which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-biovizbase which isn't installed dpkg: warning: ignoring request to remove r-bioc-bsgenome which isn't installed dpkg: warning: ignoring request to remove r-bioc-cummerbund which isn't installed dpkg: warning: ignoring request to remove r-bioc-deseq2 which isn't installed dpkg: warning: ignoring request to remove r-bioc-dnacopy which isn't installed dpkg: warning: ignoring request to remove r-bioc-ebseq which isn't installed dpkg: warning: ignoring request to remove r-bioc-edger which isn't installed dpkg: warning: ignoring request to remove r-bioc-ensembldb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genefilter which isn't installed dpkg: warning: ignoring request to remove r-bioc-geneplotter which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicfeatures which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-gviz which isn't installed dpkg: warning: ignoring request to remove r-bioc-hilbertvis which isn't installed dpkg: warning: ignoring request to remove r-bioc-interactivedisplaybase which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-limma which isn't installed dpkg: warning: ignoring request to remove r-bioc-mergeomics which isn't installed dpkg: warning: ignoring request to remove r-bioc-metagenomeseq which isn't installed dpkg: warning: ignoring request to remove r-bioc-multtest which isn't installed dpkg: warning: ignoring request to remove r-bioc-phyloseq which isn't installed dpkg: warning: ignoring request to remove r-bioc-qvalue which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-shortread which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-variantannotation which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-cran-abind which isn't installed dpkg: warning: ignoring request to remove r-cran-acepack which isn't installed dpkg: warning: ignoring request to remove r-cran-ade4 which isn't installed dpkg: warning: ignoring request to remove r-cran-adegenet which isn't installed dpkg: warning: ignoring request to remove r-cran-adegraphics which isn't installed dpkg: warning: ignoring request to remove r-cran-adephylo which isn't installed dpkg: warning: ignoring request to remove r-cran-ape which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-batchjobs which isn't installed dpkg: warning: ignoring request to remove r-cran-bbmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-bbmle which isn't installed dpkg: warning: ignoring request to remove r-cran-bio3d which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-blockmodeling which isn't installed dpkg: warning: ignoring request to remove r-cran-bold which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-brew which isn't installed dpkg: warning: ignoring request to remove r-cran-catools which isn't installed dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove r-cran-chron which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-coda which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-combinat which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-deldir which isn't installed dpkg: warning: ignoring request to remove r-cran-dichromat which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-distory which isn't installed dpkg: warning: ignoring request to remove r-cran-domc which isn't installed dpkg: warning: ignoring request to remove r-cran-doparallel which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipse which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fail which isn't installed dpkg: warning: ignoring request to remove r-cran-fastcluster which isn't installed dpkg: warning: ignoring request to remove r-cran-fastmatch which isn't installed dpkg: warning: ignoring request to remove r-cran-fields which isn't installed dpkg: warning: ignoring request to remove r-cran-foreach which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-formula which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-future which isn't installed dpkg: warning: ignoring request to remove r-cran-g.data which isn't installed dpkg: warning: ignoring request to remove r-cran-gam which isn't installed dpkg: warning: ignoring request to remove r-cran-gdata which isn't installed dpkg: warning: ignoring request to remove r-cran-genabel which isn't installed dpkg: warning: ignoring request to remove r-cran-genabel.data which isn't installed dpkg: warning: ignoring request to remove r-cran-getopt which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glmnet which isn't installed dpkg: warning: ignoring request to remove r-cran-globals which isn't installed dpkg: warning: ignoring request to remove r-cran-gmodels which isn't installed dpkg: warning: ignoring request to remove r-cran-googlevis which isn't installed dpkg: warning: ignoring request to remove r-cran-gplots which isn't installed dpkg: warning: ignoring request to remove r-cran-gridbase which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-gtools which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltable which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-hwriter which isn't installed dpkg: warning: ignoring request to remove r-cran-igraph which isn't installed dpkg: warning: ignoring request to remove r-cran-inline which isn't installed dpkg: warning: ignoring request to remove r-cran-irlba which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-learnbayes which isn't installed dpkg: warning: ignoring request to remove r-cran-listenv which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-luminescence which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mapproj which isn't installed dpkg: warning: ignoring request to remove r-cran-maps which isn't installed dpkg: warning: ignoring request to remove r-cran-markdown which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-minpack.lm which isn't installed dpkg: warning: ignoring request to remove r-cran-multicore which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nmf which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-numderiv which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-optparse which isn't installed dpkg: warning: ignoring request to remove r-cran-permute which isn't installed dpkg: warning: ignoring request to remove r-cran-phangorn which isn't installed dpkg: warning: ignoring request to remove r-cran-phylobase which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgmaker which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-praise which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-progress which isn't installed dpkg: warning: ignoring request to remove r-cran-proto which isn't installed dpkg: warning: ignoring request to remove r-cran-pscbs which isn't installed dpkg: warning: ignoring request to remove r-cran-qtl which isn't installed dpkg: warning: ignoring request to remove r-cran-quadprog which isn't installed dpkg: warning: ignoring request to remove r-cran-r.cache which isn't installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which isn't installed dpkg: warning: ignoring request to remove r-cran-r.oo which isn't installed dpkg: warning: ignoring request to remove r-cran-r.utils which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-randomforest which isn't installed dpkg: warning: ignoring request to remove r-cran-raster which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppgsl which isn't installed Purging configuration files for r-cran-rcurl (1.95-4.8-2) ... dpkg: warning: ignoring request to remove r-cran-readxl which isn't installed dpkg: warning: ignoring request to remove r-cran-registry which isn't installed dpkg: warning: ignoring request to remove r-cran-rentrez which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rgl which isn't installed dpkg: warning: ignoring request to remove r-cran-ritis which isn't installed dpkg: warning: ignoring request to remove r-cran-rlumshiny which isn't installed dpkg: warning: ignoring request to remove r-cran-rncl which isn't installed dpkg: warning: ignoring request to remove r-cran-rnexml which isn't installed dpkg: warning: ignoring request to remove r-cran-rngtools which isn't installed dpkg: warning: ignoring request to remove r-cran-rocr which isn't installed dpkg: warning: ignoring request to remove r-cran-rotl which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rredlist which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-scatterd3 which isn't installed dpkg: warning: ignoring request to remove r-cran-segmented which isn't installed dpkg: warning: ignoring request to remove r-cran-sendmailr which isn't installed dpkg: warning: ignoring request to remove r-cran-seqinr which isn't installed dpkg: warning: ignoring request to remove r-cran-shape which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-shinybs which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-solrium which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-sp which isn't installed dpkg: warning: ignoring request to remove r-cran-spam which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-spdep which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-taxize which isn't installed dpkg: warning: ignoring request to remove r-cran-tcltk2 which isn't installed dpkg: warning: ignoring request to remove r-cran-testthat which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-treescape which isn't installed dpkg: warning: ignoring request to remove r-cran-uuid which isn't installed dpkg: warning: ignoring request to remove r-cran-vegan which isn't installed dpkg: warning: ignoring request to remove r-cran-viridis which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xml2 which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed dpkg: warning: ignoring request to remove r-cran-zoo which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-mathlib which isn't installed dpkg: warning: ignoring request to remove r-other-mott-happy.hbrem which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove rambo-k which isn't installed dpkg: warning: ignoring request to remove rapmap which isn't installed Purging configuration files for rasmol (2.7.5.2-2) ... dpkg: warning: ignoring request to remove raster3d which isn't installed dpkg: warning: ignoring request to remove rate4site which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed dpkg: warning: ignoring request to remove ray which isn't installed dpkg: warning: ignoring request to remove rdp-alignment which isn't installed dpkg: warning: ignoring request to remove rdp-classifier which isn't installed dpkg: warning: ignoring request to remove rdp-classifier-doc which isn't installed dpkg: warning: ignoring request to remove rdp-readseq which isn't installed dpkg: warning: ignoring request to remove readseq which isn't installed dpkg: warning: ignoring request to remove reapr which isn't installed dpkg: warning: ignoring request to remove relion-bin which isn't installed dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove repeatmasker-recon which isn't installed dpkg: warning: ignoring request to remove reprof which isn't installed dpkg: warning: ignoring request to remove rhino which isn't installed dpkg: warning: ignoring request to remove rna-star which isn't installed dpkg: warning: ignoring request to remove rnahybrid which isn't installed dpkg: warning: ignoring request to remove roary which isn't installed dpkg: warning: ignoring request to remove rsem which isn't installed Purging configuration files for rsync (3.1.2-1+deb9u2) ... dpkg: warning: ignoring request to remove rtax which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby2.1 which isn't installed dpkg: warning: ignoring request to remove ruby2.3 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove saint which isn't installed dpkg: warning: ignoring request to remove salmon which isn't installed Purging configuration files for samtools (1.3.1-3) ... Purging configuration files for sane-utils (1.0.25-4.1) ... dpkg: warning: while removing sane-utils, directory '/etc/sane.d' not empty so not removed Purging configuration files for science-config (1.7) ... dpkg: warning: ignoring request to remove science-tasks which isn't installed dpkg: warning: ignoring request to remove scrm which isn't installed dpkg: warning: ignoring request to remove scythe which isn't installed dpkg: warning: ignoring request to remove seaview which isn't installed dpkg: warning: ignoring request to remove seer which isn't installed dpkg: warning: ignoring request to remove seqan-apps which isn't installed dpkg: warning: ignoring request to remove seqprep which isn't installed dpkg: warning: ignoring request to remove seqtk which isn't installed dpkg: warning: ignoring request to remove sga which isn't installed Purging configuration files for sgml-base (1.29) ... Purging configuration files for shared-mime-info (1.8-1+deb9u1) ... dpkg: warning: ignoring request to remove sibsim4 which isn't installed dpkg: warning: ignoring request to remove sickle which isn't installed dpkg: warning: ignoring request to remove sigma-align which isn't installed dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove sim4db which isn't installed dpkg: warning: ignoring request to remove smalt which isn't installed dpkg: warning: ignoring request to remove smithwaterman which isn't installed dpkg: warning: ignoring request to remove smrtanalysis which isn't installed dpkg: warning: ignoring request to remove snap which isn't installed dpkg: warning: ignoring request to remove snap-aligner which isn't installed dpkg: warning: ignoring request to remove sniffles which isn't installed dpkg: warning: ignoring request to remove snp-sites which isn't installed dpkg: warning: ignoring request to remove snpomatic which isn't installed dpkg: warning: ignoring request to remove soapdenovo which isn't installed dpkg: warning: ignoring request to remove soapdenovo2 which isn't installed dpkg: warning: ignoring request to remove sortmerna which isn't installed dpkg: warning: ignoring request to remove spaced which isn't installed dpkg: warning: ignoring request to remove spades which isn't installed dpkg: warning: ignoring request to remove sphinx-common which isn't installed dpkg: warning: ignoring request to remove sphinx-doc which isn't installed dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove sprai which isn't installed Purging configuration files for spread-phy (1.0.7+dfsg-1) ... dpkg: warning: ignoring request to remove sqlite3 which isn't installed dpkg: warning: ignoring request to remove squizz which isn't installed Purging configuration files for sra-toolkit (2.8.1-2+dfsg-2) ... Purging configuration files for sra-toolkit-libs0 (2.3.5-2+dfsg-1) ... dpkg: warning: ignoring request to remove srst2 which isn't installed dpkg: warning: ignoring request to remove ssake which isn't installed Purging configuration files for ssl-cert (1.0.39) ... dpkg: warning: ignoring request to remove sspace which isn't installed dpkg: warning: ignoring request to remove ssw-align which isn't installed dpkg: warning: ignoring request to remove stacks which isn't installed Purging configuration files for staden (2.0.0+b11-2+b1) ... dpkg: warning: ignoring request to remove staden-common which isn't installed dpkg: warning: ignoring request to remove staden-io-lib-utils which isn't installed dpkg: warning: ignoring request to remove steptalk which isn't installed dpkg: warning: ignoring request to remove subread which isn't installed dpkg: warning: ignoring request to remove suitename which isn't installed dpkg: warning: ignoring request to remove sumaclust which isn't installed dpkg: warning: ignoring request to remove sumatra which isn't installed dpkg: warning: ignoring request to remove sumtrees which isn't installed dpkg: warning: ignoring request to remove surankco which isn't installed dpkg: warning: ignoring request to remove swarm which isn't installed dpkg: warning: ignoring request to remove swi-prolog which isn't installed Purging configuration files for swi-prolog-nox (7.2.3+dfsg-6) ... Purging configuration files for swi-prolog-x (7.2.3+dfsg-6) ... Purging configuration files for sysstat (11.4.3-2) ... dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove t1utils which isn't installed dpkg: warning: ignoring request to remove tabix which isn't installed dpkg: warning: ignoring request to remove tantan which isn't installed Purging configuration files for tasksel (3.39) ... dpkg: warning: ignoring request to remove tasksel-data which isn't installed dpkg: warning: ignoring request to remove tcl which isn't installed Purging configuration files for tcl8.6 (8.6.6+dfsg-1+b1) ... dpkg: warning: ignoring request to remove tcllib which isn't installed dpkg: warning: ignoring request to remove tcpd which isn't installed Purging configuration files for tex-common (6.06) ... Purging configuration files for tex-gyre (20160520-1) ... Purging configuration files for texlive-base (2016.20170123-5) ... dpkg: warning: ignoring request to remove texlive-binaries which isn't installed Purging configuration files for texlive-extra-utils (2016.20170123-5) ... Purging configuration files for texlive-font-utils (2016.20170123-5) ... Purging configuration files for texlive-fonts-extra (2016.20170123-5) ... Purging configuration files for texlive-fonts-extra-doc (2016.20170123-5) ... Purging configuration files for texlive-fonts-recommended (2016.20170123-5) ... Purging configuration files for texlive-fonts-recommended-doc (2016.20170123-5) ... Purging configuration files for texlive-generic-extra (2016.20170123-5) ... Purging configuration files for texlive-generic-recommended (2016.20170123-5) ... Purging configuration files for texlive-latex-base (2016.20170123-5) ... Purging configuration files for texlive-latex-base-doc (2016.20170123-5) ... Purging configuration files for texlive-latex-extra (2016.20170123-5) ... Purging configuration files for texlive-latex-extra-doc (2016.20170123-5) ... Purging configuration files for texlive-latex-recommended (2016.20170123-5) ... Purging configuration files for texlive-latex-recommended-doc (2016.20170123-5) ... Purging configuration files for texlive-math-extra (2014.20141024-1) ... dpkg: warning: while removing texlive-math-extra, directory '/etc/texmf' not empty so not removed Purging configuration files for texlive-pictures (2016.20170123-5) ... Purging configuration files for texlive-pictures-doc (2016.20170123-5) ... Purging configuration files for texlive-pstricks (2016.20170123-5) ... Purging configuration files for texlive-pstricks-doc (2016.20170123-5) ... Purging configuration files for texlive-science (2016.20170123-5) ... Purging configuration files for texlive-science-doc (2016.20170123-5) ... dpkg: warning: ignoring request to remove theseus which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove time which isn't installed Purging configuration files for tipa (2:1.3-20) ... dpkg: warning: ignoring request to remove tk which isn't installed dpkg: warning: ignoring request to remove tk-table which isn't installed Purging configuration files for tk8.6 (8.6.6-1+b1) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove tklib which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed dpkg: warning: ignoring request to remove tophat which isn't installed Purging configuration files for topp (1.11.1-5) ... dpkg: warning: ignoring request to remove toppred which isn't installed dpkg: warning: ignoring request to remove transdecoder which isn't installed dpkg: warning: ignoring request to remove transrate-tools which isn't installed dpkg: warning: ignoring request to remove transtermhp which isn't installed Purging configuration files for tree-puzzle (5.2-8+b3) ... dpkg: warning: ignoring request to remove tree-puzzle-doc which isn't installed Purging configuration files for treeview (1.1.6.4+dfsg1-2) ... dpkg: warning: ignoring request to remove treeviewx which isn't installed dpkg: warning: ignoring request to remove trimmomatic which isn't installed dpkg: warning: ignoring request to remove trinityrnaseq which isn't installed dpkg: warning: ignoring request to remove trinityrnaseq-examples which isn't installed dpkg: warning: ignoring request to remove ttf-adf-accanthis which isn't installed dpkg: warning: ignoring request to remove ttf-adf-gillius which isn't installed dpkg: warning: ignoring request to remove ttf-adf-universalis which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed dpkg: warning: ignoring request to remove ttf-dejavu which isn't installed dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed dpkg: warning: ignoring request to remove ttf-dejavu-extra which isn't installed dpkg: warning: ignoring request to remove ttf-liberation which isn't installed dpkg: warning: ignoring request to remove uc-echo which isn't installed Purging configuration files for ucf (3.0036) ... Purging configuration files for unzip (6.0-21+deb9u2) ... Purging configuration files for update-inetd (4.44) ... dpkg: warning: ignoring request to remove varna which isn't installed dpkg: warning: ignoring request to remove vcftools which isn't installed dpkg: warning: ignoring request to remove velvet which isn't installed dpkg: warning: ignoring request to remove velvetoptimiser which isn't installed Purging configuration files for vprerex (6.5.3-1+b2) ... dpkg: warning: ignoring request to remove vsearch which isn't installed dpkg: warning: ignoring request to remove wigeon which isn't installed dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+19) ... Purging configuration files for x11-utils (7.7+3+b1) ... Purging configuration files for x11-xserver-utils (7.7+7+b1) ... dpkg: warning: ignoring request to remove x11proto-core-dev which isn't installed dpkg: warning: ignoring request to remove x11proto-input-dev which isn't installed dpkg: warning: ignoring request to remove x11proto-kb-dev which isn't installed dpkg: warning: ignoring request to remove xauth which isn't installed dpkg: warning: ignoring request to remove xbitmaps which isn't installed Purging configuration files for xdg-user-dirs (0.15-2+b1) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed Purging configuration files for xfonts-100dpi (1:1.0.4+nmu1) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+4) ... dpkg: warning: ignoring request to remove xkb-data which isn't installed Purging configuration files for xml-core (0.17) ... dpkg: warning: ignoring request to remove xorg-sgml-doctools which isn't installed dpkg: warning: ignoring request to remove xsltproc which isn't installed Purging configuration files for xterm (327-2) ... dpkg: warning: while removing xterm, directory '/etc/X11' not empty so not removed dpkg: warning: ignoring request to remove xtrans-dev which isn't installed dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zalign which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed Processing triggers for systemd (232-25+deb9u12) ... 40m42.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg', '--purge', 'abacas', 'abyss', 'acedb-other', 'acedb-other-belvu', 'acedb-other-dotter', 'adapterremoval', 'adun-core', 'adun.app', 'adwaita-icon-theme', 'aegean', 'aevol', 'aglfn', 'alien-hunter', 'alter-sequence-alignment', 'altree', 'amap-align', 'ampliconnoise', 'andi', 'anfo', 'ant', 'ant-contrib', 'ant-optional', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'apbs', 'aragorn', 'arden', 'ariba', 'art-nextgen-simulation-tools', 'artemis', 'artfastqgenerator', 'aspell', 'aspell-en', 'astro-tasks', 'at-spi2-core', 'atac', 'augustus', 'augustus-data', 'autoconf', 'autodock', 'autodock-vina', 'autogrid', 'automake', 'autopoint', 'autotools-dev', 'axe-demultiplexer', 'ballview', 'bamtools', 'barrnap', 'bauble', 'bc', 'bcftools', 'beagle', 'beast-mcmc', 'beast2-mcmc', 'bedtools', 'beignet-opencl-icd:amd64', 'berkeley-express', 'binfmt-support', 'binutils', 'bio-eagle', 'bio-rainbow', 'biomaj', 'bioperl', 'bioperl-run', 'biosquid', 'blasr', 'blast2', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'boxshade', 'brig', 'bsdmainutils', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'ca-certificates', 'ca-certificates-java', 'cassiopee', 'cd-hit', 'cdbfasta', 'cdbs', 'cgview', 'chimeraslayer', 'circlator', 'circos', 'circos-tools', 'clearcut', 'clonalframe', 'clustalo', 'clustalw', 'clustalx', 'codonw', 'colord', 'colord-data', 'concavity', 'conservation-code', 'cpp', 'cpp-4.9', 'cpp-6', 'crac', 'critterding', 'cron', 'curl', 'cutadapt', 'cython', 'daligner', 'dascrubber', 'datamash', 'dawg', 'dazzdb', 'dbus', 'dbus-java-bin', 'dconf-gsettings-backend:amd64', 'dconf-service', 'debhelper', 'debichem-tasks', 'default-jre', 'default-jre-headless', 'default-mysql-client', 'dh-autoreconf', 'dh-python', 'dh-strip-nondeterminism', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dictionaries-common', 'dindel', 'discosnp', 'disulfinder', 'disulfinder-data', 'dmidecode', 'dnaclust', 'docutils-common', 'docutils-doc', 'dpkg-dev', 'dssp', 'dvipng', 'dwgsim', 'ea-utils', 'ecopcr', 'edtsurf', 'eigensoft', 'emacsen-common', 'embassy-domainatrix', 'embassy-domalign', 'embassy-domsearch', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'f2j', 'fakeroot', 'falcon', 'fastahack', 'fastaq', 'fastdnaml', 'fastjar', 'fastlink', 'fastml', 'fastqc', 'fastqtl', 'fasttree', 'fastx-toolkit', 'ffindex', 'figtree', 'file', 'filo', 'fitgcp', 'flexbar', 'fml-asm', 'fontconfig', 'fontconfig-config', 'fonts-cabin', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-comfortaa', 'fonts-croscore', 'fonts-crosextra-caladea', 'fonts-crosextra-carlito', 'fonts-dejavu', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid', 'fonts-droid-fallback', 'fonts-ebgaramond', 'fonts-ebgaramond-extra', 'fonts-font-awesome', 'fonts-freefont-otf', 'fonts-freefont-ttf', 'fonts-gfs-artemisia', 'fonts-gfs-complutum', 'fonts-gfs-didot', 'fonts-gfs-neohellenic', 'fonts-gfs-olga', 'fonts-gfs-solomos', 'fonts-inconsolata', 'fonts-junicode', 'fonts-lato', 'fonts-liberation', 'fonts-linuxlibertine', 'fonts-lmodern', 'fonts-lobster', 'fonts-lobstertwo', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-hinted', 'fonts-noto-mono', 'fonts-oflb-asana-math', 'fonts-roboto-hinted', 'fonts-sil-gentium', 'fonts-sil-gentium-basic', 'fonts-sil-gentiumplus', 'fonts-sil-gentiumplus-compact', 'fonts-stix', 'fonts-texgyre', 'fop', 'freecontact', 'freeglut3:amd64', 'fsa', 'fsm-lite', 'g++', 'g++-4.9', 'g++-6', 'gamgi', 'garli', 'garlic', 'gasic', 'gawk', 'gbrowse', 'gcc', 'gcc-4.9', 'gcc-6', 'gdpc', 'genometools', 'genometools-common', 'gentle', 'gettext', 'gettext-base', 'gff2aplot', 'gff2ps', 'gfortran', 'gfortran-4.9', 'gfortran-6', 'ghemical', 'ghostscript', 'giira', 'glam2', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'glpk-utils', 'gnupg', 'gnupg-agent', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gnustep-back-common', 'gnustep-back0.25', 'gnustep-back0.25-cairo', 'gnustep-base-common', 'gnustep-base-runtime', 'gnustep-common', 'gnustep-dl2-postgresql-adaptor', 'gnustep-gui-common', 'gnustep-gui-runtime', 'graphlan', 'graphviz', 'grinder', 'groff-base', 'gromacs', 'gromacs-data', 'gsettings-desktop-schemas', 'gsfonts', 'gstreamer1.0-plugins-base:amd64', 'gtk-update-icon-cache', 'gubbins', 'guile-2.0-libs:amd64', 'gwama', 'harvest-tools', 'hdf5-tools', 'hhsuite', 'hhsuite-data', 'hicolor-icon-theme', 'hilive', 'hisat2', 'hmmer', 'hmmer2', 'hyphy-common', 'hyphy-mpi', 'hyphygui', 'icc-profiles-free', 'icedtea-netx-common', 'icu-devtools', 'idba', 'ifupdown', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'imagemagick-common', 'indelible', 'infernal', 'intltool-debian', 'ipig', 'iproute2', 'ipython', 'iqtree', 'isc-dhcp-client', 'isc-dhcp-common', 'iso-codes', 'isympy', 'isympy-common', 'iva', 'jaligner', 'jalview', 'jarwrapper', 'java-common', 'java-wrappers', 'javahelp2', 'javascript-common', 'jellyfish', 'jemboss', 'jmodeltest', 'jmol', 'jmol-applet', 'junit', 'junit4', 'kalign', 'khmer:amd64', 'khmer-common', 'kineticstools', 'kineticstools-data', 'king', 'king-probe', 'kissplice', 'kmc', 'kmer', 'kraken', 'krb5-locales', 'ksh', 'lambda-align', 'laptop-detect', 'last-align', 'leaff', 'lefse', 'libace-perl', 'libaec0:amd64', 'libai-fann-perl', 'libaio1:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libamd2:amd64', 'libamd2.3.1:amd64', 'libanfo0', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libao-common', 'libao4', 'libapache-dbi-perl', 'libapache-mime4j-java', 'libapache-pom-java', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libarchive-extract-perl', 'libarchive-zip-perl', 'libarchive13:amd64', 'libargtable2-0', 'libarmadillo7', 'libarpack2', 'libarray-compare-perl', 'libarray-utils-perl', 'libart-2.0-2:amd64', 'libasan1:amd64', 'libasan3:amd64', 'libasm-java', 'libasound2:amd64', 'libasound2-data', 'libaspell15:amd64', 'libasprintf-dev:amd64', 'libasprintf0v5:amd64', 'libasync-interrupt-perl', 'libasyncns0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatlas3-base', 'libatm1:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libaudio2:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavalon-framework-java', 'libaxis-java', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libball1.4', 'libball1.4-data', 'libballview1.4', 'libbambamc0', 'libbamtools2.3.0', 'libbamtools2.4.0', 'libbareword-filehandles-perl', 'libbatik-java', 'libbcmail-java', 'libbcpkix-java', 'libbcprov-java', 'libbio-asn1-entrezgene-perl', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbiojava-java', 'libbiojava1.7-java', 'libbit-vector-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libblasr:amd64', 'libblosc1', 'libboost-atomic1.62.0:amd64', 'libboost-chrono1.55.0:amd64', 'libboost-chrono1.62.0:amd64', 'libboost-date-time1.55.0:amd64', 'libboost-date-time1.62.0:amd64', 'libboost-filesystem1.55.0:amd64', 'libboost-filesystem1.62.0:amd64', 'libboost-iostreams1.55.0:amd64', 'libboost-iostreams1.62.0:amd64', 'libboost-math1.55.0:amd64', 'libboost-math1.62.0:amd64', 'libboost-mpi1.55.0', 'libboost-mpi1.62.0', 'libboost-program-options1.55.0:amd64', 'libboost-program-options1.62.0:amd64', 'libboost-random1.55.0:amd64', 'libboost-random1.62.0:amd64', 'libboost-regex1.55.0:amd64', 'libboost-regex1.62.0:amd64', 'libboost-serialization1.55.0:amd64', 'libboost-serialization1.62.0:amd64', 'libboost-system1.55.0:amd64', 'libboost-system1.62.0:amd64', 'libboost-thread1.55.0:amd64', 'libboost-thread1.62.0:amd64', 'libboost-timer1.55.0:amd64', 'libboost-timer1.62.0:amd64', 'libbpp-core2v5:amd64', 'libbpp-phyl-omics1v5', 'libbpp-phyl9v5:amd64', 'libbpp-seq-omics1v5:amd64', 'libbpp-seq9v5:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbsf-java', 'libbytecode-java', 'libbytes-random-secure-perl', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaca0:amd64', 'libcache-cache-perl', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcanberra-gtk3-0:amd64', 'libcanberra-gtk3-module:amd64', 'libcanberra0:amd64', 'libcapnp-0.5.3', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcassie1', 'libcassie1v5', 'libcastor-core-java', 'libcastor-xml-java', 'libcbf0:amd64', 'libcc1-0:amd64', 'libcdparanoia0:amd64', 'libcdt5', 'libcfitsio2:amd64', 'libcfitsio5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libclass-method-modifiers-perl', 'libclass-tiny-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcloog-isl4:amd64', 'libcneartree5:amd64', 'libcofoja-java', 'libcolamd2:amd64', 'libcolamd2.8.0:amd64', 'libcolord2:amd64', 'libcolorhug2:amd64', 'libcolt-free-java', 'libcommon-sense-perl', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-configuration-java', 'libcommons-dbcp-java', 'libcommons-discovery-java', 'libcommons-httpclient-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-net-java', 'libcommons-net2-java', 'libcommons-parent-java', 'libcommons-pool-java', 'libconcurrent-java', 'libconfig-general-perl', 'libconfig-inifiles-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcpan-changes-perl', 'libcpan-meta-perl', 'libcqrlib2:amd64', 'libcr0', 'libcroco3:amd64', 'libcrypt-random-seed-perl', 'libcrypt-rc4-perl', 'libcrypt-ssleay-perl', 'libcrypto++6', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3:amd64', 'libcurl3-gnutls:amd64', 'libcvector2:amd64', 'libdata-dumper-simple-perl', 'libdata-optlist-perl', 'libdata-perl-perl', 'libdata-section-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libdbus-1-3:amd64', 'libdbus-java', 'libdconf1:amd64', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-overloadinfo-perl', 'libdevel-partialdump-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdirectfb-1.2-9:amd64', 'libdisorder0:amd64', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdns-export100', 'libdns-export162', 'libdom4j-java', 'libdouble-conversion1:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdsdp-5.8gf', 'libecpg6:amd64', 'libedit2:amd64', 'libegl1-mesa:amd64', 'libelf1:amd64', 'libelfg0:amd64', 'libelk0', 'libemail-date-format-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libepoxy0:amd64', 'liberfa1:amd64', 'liberror-perl', 'libev-perl', 'libeval-closure-perl', 'libevdev2:amd64', 'libexception-class-perl', 'libexif12:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libexporter-tiny-perl', 'libf2j-java', 'libfabric1', 'libfakeroot:amd64', 'libfann2:amd64', 'libfastahack0', 'libfastutil-java', 'libfcgi-perl', 'libffindex0', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfile-basedir-perl', 'libfile-chdir-perl', 'libfile-copy-link-perl', 'libfile-copy-recursive-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-homedir-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-slurper-perl', 'libfile-stripnondeterminism-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libflac8:amd64', 'libflite1:amd64', 'libfltk-images1.3:amd64', 'libfltk1.3:amd64', 'libfml0', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontbox-java', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfop-java', 'libfreecontact0', 'libfreecontact0v5:amd64', 'libfreehep-export-java', 'libfreehep-graphics2d-java', 'libfreehep-graphicsio-emf-java', 'libfreehep-graphicsio-java', 'libfreehep-graphicsio-pdf-java', 'libfreehep-graphicsio-ps-java', 'libfreehep-graphicsio-svg-java', 'libfreehep-graphicsio-swf-java', 'libfreehep-graphicsio-tests-java', 'libfreehep-io-java', 'libfreehep-swing-java', 'libfreehep-util-java', 'libfreehep-xml-java', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libftgl2:amd64', 'libfuse2:amd64', 'libg20', 'libgail-common:amd64', 'libgail18:amd64', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-4.9-dev:amd64', 'libgcc-6-dev:amd64', 'libgd-graph-perl', 'libgd-perl', 'libgd-svg-perl', 'libgd-text-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgenome-1.3-0v5:amd64', 'libgenometools0', 'libgetopt-euclid-perl', 'libgetopt-java', 'libgetopt-long-descriptive-perl', 'libgetopt-simple-perl', 'libgettextpo-dev:amd64', 'libgettextpo0:amd64', 'libgflags2', 'libgflags2v5', 'libgfortran-4.9-dev:amd64', 'libgfortran-6-dev:amd64', 'libgfortran3:amd64', 'libghemical-data', 'libghemical5v5', 'libgif4:amd64', 'libgif7:amd64', 'libgkarrays1', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglade2-0:amd64', 'libglapi-mesa:amd64', 'libglew1.10:amd64', 'libglew2.0:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglpk-java', 'libglpk36:amd64', 'libglpk40:amd64', 'libglu1-mesa:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnuinet-java', 'libgnumail-java', 'libgnustep-base1.24', 'libgnustep-dl2-0d', 'libgnustep-gui0.24', 'libgnustep-gui0.25', 'libgnutls-deb0-28:amd64', 'libgo-perl', 'libgomp1:amd64', 'libgoogle-glog0', 'libgoogle-glog0v5', 'libgphoto2-6:amd64', 'libgphoto2-l10n', 'libgphoto2-port10:amd64', 'libgphoto2-port12:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgromacs2', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgsl-dev', 'libgsl0ldbl', 'libgsl2:amd64', 'libgssapi-krb5-2:amd64', 'libgstreamer-plugins-base1.0-0:amd64', 'libgstreamer1.0-0:amd64', 'libgtextutils0:amd64', 'libgtextutils0v5:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgtkglext1', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libguava-java', 'libgudev-1.0-0:amd64', 'libgusb2:amd64', 'libgvc6', 'libgvpr2', 'libgzstream0', 'libhamcrest-java', 'libharfbuzz-icu0:amd64', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhdf5-100:amd64', 'libhdf5-8:amd64', 'libhdf5-cpp-100:amd64', 'libheap-perl', 'libhmsbeagle-java', 'libhmsbeagle1', 'libhmsbeagle1v5', 'libhogweed2:amd64', 'libhpdf-2.2.1', 'libhsqldb-java', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttpclient-java', 'libhttpcore-java', 'libhttpmime-java', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibatis-java', 'libibverbs1', 'libice-dev:amd64', 'libice6:amd64', 'libicu-dev', 'libicu52:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libieee1284-3:amd64', 'libijs-0.35:amd64', 'libilmbase12:amd64', 'libilmbase6:amd64', 'libimport-into-perl', 'libindirect-perl', 'libinput-bin', 'libinput10:amd64', 'libint1', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libirs-export91', 'libisc-export160', 'libisc-export95', 'libisccfg-export90', 'libisl10:amd64', 'libisl15:amd64', 'libisorelax-java', 'libitext-java', 'libitext1-java', 'libitext5-java', 'libitm1:amd64', 'libj2ssh-java', 'libjaba-client-java', 'libjam-java', 'libjargs-java', 'libjas-plotter-java', 'libjasper1:amd64', 'libjava-xmlbuilder-java', 'libjaxen-java', 'libjaxp1.3-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjcommon-java', 'libjdom1-java', 'libjebl2-java', 'libjellyfish-2.0-2', 'libjemalloc1', 'libjets3t-java', 'libjgoodies-common-java', 'libjgoodies-forms-java', 'libjlapack-java', 'libjline-java', 'libjmol-java', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-modernizr', 'libjs-mootools', 'libjs-prototype', 'libjs-scriptaculous', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjsch-java', 'libjson-c2:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjson-perl', 'libjson-xs-perl', 'libjsoncpp0', 'libjsoncpp1:amd64', 'libjsr305-java', 'libjswingreader-java', 'libjung-free-java', 'libjxr-tools', 'libjxr0:amd64', 'libjzlib-java', 'libk5crypto3:amd64', 'libkdf5-2', 'libkeyutils1:amd64', 'libkpathsea6:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libkyotocabinet16v5:amd64', 'liblapack-dev', 'liblapack3', 'liblapacke', 'liblcms2-2:amd64', 'liblexical-sealrequirehints-perl', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm3.5:amd64', 'libllvm3.9:amd64', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblog-message-perl', 'liblog-message-simple-perl', 'liblog4cpp5', 'liblog4cpp5v5', 'liblog4j1.2-java', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-2:amd64', 'libmagickcore-6.q16-3:amd64', 'libmagickcore-6.q16-3-extra:amd64', 'libmagickwand-6.q16-2:amd64', 'libmagickwand-6.q16-3:amd64', 'libmail-java', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmaloc1', 'libmariadbclient18:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-random-isaac-perl', 'libmath-random-isaac-xs-perl', 'libmath-random-mt-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-tamuanova-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmatthew-debug-java', 'libmbedcrypto0:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedx509-0:amd64', 'libmems-1.6-1v5:amd64', 'libmiglayout-java', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminimap0', 'libmldbm-perl', 'libmng1:amd64', 'libmnl0:amd64', 'libmodule-build-perl', 'libmodule-implementation-perl', 'libmodule-load-conditional-perl', 'libmodule-pluggable-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmodule-signature-perl', 'libmoo-perl', 'libmoose-perl', 'libmoox-handlesvia-perl', 'libmopac7-1gf', 'libmotif-common', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpj-java', 'libmpx2:amd64', 'libmro-compat-perl', 'libmsv-java', 'libmtdev1:amd64', 'libmtj-java', 'libmultidimensional-perl', 'libmuscle-3.7-1', 'libmysql-java', 'libmysqlclient18:amd64', 'libnaga-java', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libnanoxml2-java', 'libnb-org-openide-util-java', 'libnb-org-openide-util-lookup-java', 'libncbi-vdb2', 'libncbi-wvdb2', 'libncbi6:amd64', 'libncl1', 'libncurses5-dev:amd64', 'libncursesw5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetlib-java', 'libnetpbm10', 'libnettle4:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnucleotidelikelihoodcore0', 'libnuma1:amd64', 'libnumber-compare-perl', 'libnumber-format-perl', 'libobjc4:amd64', 'libogg0:amd64', 'liboglappth2', 'libole-storage-lite-perl', 'libopenbabel4v5', 'libopenblas-base', 'libopenexr22:amd64', 'libopenexr6:amd64', 'libopenjp2-7:amd64', 'libopenjpeg5:amd64', 'libopenmpi1.6', 'libopenmpi2:amd64', 'libopus0:amd64', 'liborc-0.4-0:amd64', 'liboro-java', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-constants-perl', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpal-java', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpango1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpangox-1.0-0:amd64', 'libpangoxft-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparse-recdescent-perl', 'libparse-yapp-perl', 'libpath-tiny-perl', 'libpathplan4', 'libpbbam:amd64', 'libpbdata:amd64', 'libpbihdf:amd64', 'libpbseq', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libperformance0.5', 'libperl4-corelibs-perl', 'libperl5.24:amd64', 'libperlio-gzip-perl', 'libperlio-utf8-strict-perl', 'libpgtypes3:amd64', 'libpicard-java', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng12-dev:amd64', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpod-latex-perl', 'libpod-markdown-perl', 'libpod-readme-perl', 'libpolkit-agent-1-0:amd64', 'libpolkit-backend-1-0:amd64', 'libpolkit-gobject-1-0:amd64', 'libpoppler-qt4-4:amd64', 'libpoppler46:amd64', 'libpoppler64:amd64', 'libpopt0:amd64', 'libpostgresql-jdbc-java', 'libpostscript-perl', 'libpotrace0', 'libpq5:amd64', 'libprocessing-core-java', 'libprocps3:amd64', 'libprotobuf10:amd64', 'libprotobuf9:amd64', 'libproxy1:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libptexenc1:amd64', 'libpth20:amd64', 'libpthread-stubs0-dev:amd64', 'libpulse0:amd64', 'libpvm3:amd64', 'libpython-all-dev:amd64', 'libpython-dev:amd64', 'libpython-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-dev:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libqes0', 'libqt4-dbus:amd64', 'libqt4-declarative:amd64', 'libqt4-designer:amd64', 'libqt4-help:amd64', 'libqt4-network:amd64', 'libqt4-opengl:amd64', 'libqt4-script:amd64', 'libqt4-scripttools:amd64', 'libqt4-sql:amd64', 'libqt4-sql-mysql:amd64', 'libqt4-svg:amd64', 'libqt4-test:amd64', 'libqt4-xml:amd64', 'libqt4-xmlpatterns:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5svg5:amd64', 'libqt5widgets5:amd64', 'libqt5xml5:amd64', 'libqtassistantclient4:amd64', 'libqtcore4:amd64', 'libqtdbus4:amd64', 'libqtgui4:amd64', 'libqtwebkit4:amd64', 'libquadmath0:amd64', 'librdmacm1', 'librdp-taxonomy-tree-java', 'libreadline-dev:amd64', 'libreadline5:amd64', 'libreadonly-perl', 'libregexp-common-perl', 'libregexp-java', 'librelaxng-datatype-java', 'librelion-1.3-1:amd64', 'librelion-1.4-1:amd64', 'librest-0.7-0:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'librhino-java', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby2.1:amd64', 'libruby2.3:amd64', 'libsam-java', 'libsane:amd64', 'libsane-common', 'libsane-extras:amd64', 'libsane-extras-common', 'libsaxon-java', 'libsaxonb-java', 'libsaxonhe-java', 'libsc-data', 'libsc7v5', 'libscalar-list-utils-perl', 'libsctp1:amd64', 'libsdl1.2debian:amd64', 'libsdsl3:amd64', 'libsensors4:amd64', 'libservlet2.5-java', 'libservlet3.1-java', 'libset-intspan-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm-dev:amd64', 'libsm6:amd64', 'libsmithwaterman0', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsnp-sites1', 'libsoap-lite-perl', 'libsoftware-license-perl', 'libsort-naturally-perl', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsprng2', 'libsqlclient1.7', 'libsqlite0', 'libsquizz', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libssw-java', 'libssw0:amd64', 'libstaden-read1', 'libstaden-read11:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstdc++-4.9-dev:amd64', 'libstdc++-6-dev:amd64', 'libsteptalk0', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-uplevel-perl', 'libsuitesparseconfig4:amd64', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsvm3', 'libswing-layout-java', 'libsynctex1:amd64', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtabixpp0:amd64', 'libtablelayout-java', 'libtamuanova-0.2', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.5:amd64', 'libtcl8.6:amd64', 'libtcmalloc-minimal4', 'libtdb1:amd64', 'libterm-readkey-perl', 'libterm-ui-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-pod-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtexlua52:amd64', 'libtexluajit2:amd64', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-glob-perl', 'libtext-soundex-perl', 'libtext-template-perl', 'libthai-data', 'libthai0:amd64', 'libtheora0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtinyxml2.6.2:amd64', 'libtinyxml2.6.2v5:amd64', 'libtk8.5:amd64', 'libtk8.6:amd64', 'libtmglib3', 'libtool', 'libtre5:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libubsan0:amd64', 'libunicode-map-perl', 'libunicode-utf8-perl', 'libunistring0:amd64', 'libunixsocket-java', 'libunwind8', 'liburi-perl', 'libusb-1.0-0:amd64', 'libutempter0:amd64', 'libv4l-0:amd64', 'libv4lconvert0:amd64', 'libvamsas-client-java', 'libvariable-magic-perl', 'libvcflib-tools', 'libvcflib1', 'libvecmath-java', 'libvibrant6b:amd64', 'libvisual-0.4-0:amd64', 'libvisual-0.4-plugins:amd64', 'libvm-ec2-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libvorbisfile3:amd64', 'libvpx1:amd64', 'libvte-common', 'libvte9', 'libwacom-bin', 'libwacom-common', 'libwacom2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwcs5:amd64', 'libwebp5:amd64', 'libwebp6:amd64', 'libwebpdemux1:amd64', 'libwebpdemux2:amd64', 'libwebpmux1:amd64', 'libwebpmux2:amd64', 'libwmf0.2-7:amd64', 'libwrap0:amd64', 'libwsdl4j-java', 'libwww-perl', 'libwww-robotrules-perl', 'libwxbase3.0-0:amd64', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-0:amd64', 'libwxgtk3.0-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-dev:amd64', 'libx11-doc', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxalan2-java', 'libxau-dev:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util0:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcb1-dev:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp-dev:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.1:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxfont1:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxm4:amd64', 'libxml-checker-perl', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlgraphics-commons-java', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxom-java', 'libxpm4:amd64', 'libxpp2-java', 'libxpp3-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt-dev:amd64', 'libxt6:amd64', 'libxtables10', 'libxtables12:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyaml-tiny-perl', 'libzeep3.0', 'libzeep3.0v5', 'libzeus-jscl-java', 'libzstd1', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lksctp-tools', 'lmodern', 'logol-bin', 'loki', 'ltrsift', 'lua-filesystem:amd64', 'lua-lpeg:amd64', 'lua-md5:amd64', 'lynx', 'lynx-common', 'lynx-cur', 'm4', 'macs', 'macsyfinder', 'maffilter', 'mafft', 'mailutils', 'mailutils-common', 'make', 'man-db', 'manpages-dev', 'mapdamage', 'mapsembler2', 'maq', 'maqview', 'mariadb-client-10.1', 'mariadb-client-core-10.1', 'mariadb-common', 'mash', 'massxpert', 'massxpert-data', 'mauve-aligner', 'mcl', 'med-bio', 'med-config', 'med-tasks', 'melting', 'menu', 'meryl', 'mesa-utils', 'metaphlan2', 'metaphlan2-data', 'metastudent', 'metastudent-data', 'metastudent-data-2', 'mhap', 'microbegps', 'microbiomeutil', 'microbiomeutil-data', 'mime-support', 'minia', 'miniasm', 'minimap', 'mipe', 'mira-assembler', 'mira-rfam-12s-rrna', 'mknfonts.tool', 'mlv-smile', 'mothur', 'mpi-default-bin', 'mpqc', 'mrbayes', 'mrs', 'mummer', 'murasaki', 'murasaki-common', 'muscle', 'mustang', 'mysql-client', 'mysql-common', 'nanopolish', 'nast-ier', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-entrez-direct', 'ncbi-epcr', 'ncbi-seg', 'ncbi-tools-bin', 'ncbi-tools-x11', 'ncl-tools', 'ncoils', 'neobio', 'netbase', 'netpbm', 'njplot', 'norsnet', 'norsp', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'openjdk-7-jre-headless:amd64', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openms-common', 'openssh-client', 'openssl', 'paraclu', 'parafly', 'parallel', 'parsinsert', 'parsnp', 'patch', 'pbalign', 'pbbamtools', 'pbbarcode', 'pbdagcon', 'pbgenomicconsensus', 'pbh5tools', 'pbhoney', 'pbjelly', 'pbsim', 'pbsuite', 'pdb2pqr', 'perl', 'perl-doc', 'perl-modules', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'perl-tk', 'perlprimer', 'perm', 'phipack', 'phybin', 'phylip', 'phyml', 'physamp', 'phyutility', 'picard-tools', 'piler', 'pinentry-curses', 'pirs', 'pirs-profiles', 'pkg-config', 'placnet', 'plasmidomics', 'plast', 'plink', 'plink1.9', 'plip', 'po-debconf', 'poa', 'policykit-1', 'poppler-data', 'populations', 'poretools', 'pp-popularity-contest', 'prank', 'predictnls', 'predictprotein', 'prerex', 'preview-latex-style', 'prime-phylo', 'primer3', 'proalign', 'probabel', 'probalign', 'probcons', 'proda', 'prodigal', 'profbval', 'profisis', 'profnet-bval', 'profnet-chop', 'profnet-con', 'profnet-isis', 'profnet-md', 'profnet-norsnet', 'profnet-prof', 'profnet-snapfun', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'progressivemauve', 'prosper', 'proteinortho', 'prottest', 'ps2eps', 'psmisc', 'publicsuffix', 'pvm', 'pycorrfit', 'pymol', 'pymol-data', 'pynast', 'pyqi', 'pyscanfcs', 'python', 'python-alabaster', 'python-all', 'python-all-dev', 'python-antlr', 'python-astropy', 'python-avro', 'python-babel', 'python-babel-localedata', 'python-backports-shutil-get-terminal-size', 'python-ball', 'python-ballview', 'python-biom-format', 'python-biopython', 'python-biopython-doc', 'python-bs4', 'python-cairo', 'python-cffi-backend', 'python-chardet', 'python-click', 'python-cogent', 'python-colorama', 'python-configobj', 'python-configparser', 'python-crypto', 'python-cryptography', 'python-cvxopt', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-dendropy', 'python-dev', 'python-docutils', 'python-egenix-mxdatetime', 'python-egenix-mxtools', 'python-enum34', 'python-funcsigs', 'python-functools32', 'python-future', 'python-gdata', 'python-glade2', 'python-gmpy', 'python-gobject-2', 'python-gtk2', 'python-h5py', 'python-html5lib', 'python-htseq', 'python-idna', 'python-imagesize', 'python-imaging', 'python-intervaltree', 'python-intervaltree-bio', 'python-ipaddress', 'python-ipython', 'python-ipython-genutils', 'python-iso8601', 'python-jdcal', 'python-jinja2', 'python-joblib', 'python-kineticstools', 'python-lmfit', 'python-lxml', 'python-mako', 'python-markupsafe', 'python-matplotlib', 'python-matplotlib-data', 'python-matplotlib-venn', 'python-minimal', 'python-mock', 'python-mpi4py', 'python-mpmath', 'python-msgpack', 'python-multipletau', 'python-mysqldb', 'python-networkx', 'python-nose', 'python-numexpr', 'python-numpy', 'python-openbabel', 'python-opengl', 'python-openpyxl', 'python-openssl', 'python-pandas', 'python-pandas-lib', 'python-pathlib2', 'python-patsy', 'python-pbalign', 'python-pbbanana', 'python-pbcommand', 'python-pbconsensuscore', 'python-pbcore', 'python-pbgenomicconsensus', 'python-pbh5tools', 'python-pbr', 'python-pbsuite-utils', 'python-pexpect', 'python-pickleshare', 'python-pil:amd64', 'python-pkg-resources', 'python-ply', 'python-pmw', 'python-prompt-toolkit', 'python-ptyprocess', 'python-py', 'python-pyasn1', 'python-pyfits', 'python-pyglet', 'python-pygments', 'python-pygraphviz', 'python-pyparsing', 'python-pyrex', 'python-pysam', 'python-pysqlite2', 'python-pytest', 'python-qcli', 'python-qt4', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-requests', 'python-roman', 'python-rpy2', 'python-ruffus', 'python-scipy', 'python-seaborn', 'python-setuptools', 'python-simplegeneric', 'python-simplejson', 'python-singledispatch', 'python-sip', 'python-six', 'python-sklearn', 'python-sklearn-lib', 'python-sortedcontainers', 'python-sphinx', 'python-sqlalchemy', 'python-sqlalchemy-ext', 'python-statsmodels', 'python-statsmodels-lib', 'python-subprocess32', 'python-support', 'python-sympy', 'python-sympy-doc', 'python-tables', 'python-tables-data', 'python-tables-lib', 'python-tk', 'python-traitlets', 'python-tz', 'python-urllib3', 'python-wcwidth', 'python-webencodings', 'python-wxgtk3.0', 'python-wxversion', 'python-xlrd', 'python-xlwt', 'python-yaml', 'python2.7', 'python2.7-dev', 'python2.7-minimal', 'python3', 'python3-biopython', 'python3-bs4', 'python3-bz2file', 'python3-chardet', 'python3-cutadapt', 'python3-decorator', 'python3-dendropy', 'python3-html5lib', 'python3-jdcal', 'python3-lxml', 'python3-minimal', 'python3-networkx', 'python3-nose', 'python3-numpy', 'python3-openpyxl', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-py', 'python3-pymummer', 'python3-pysam', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-screed', 'python3-six', 'python3-webencodings', 'python3-xopen', 'python3-yaml', 'python3.4', 'python3.4-minimal', 'python3.5', 'python3.5-minimal', 'qdbus', 'qiime', 'qiime-data', 'qt-at-spi:amd64', 'qt5-gtk-platformtheme:amd64', 'qtchooser', 'qtcore4-l10n', 'qtltools', 'qttranslations5-l10n', 'r-base', 'r-base-core', 'r-base-dev', 'r-base-html', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biomformat', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-cummerbund', 'r-bioc-deseq2', 'r-bioc-dnacopy', 'r-bioc-ebseq', 'r-bioc-edger', 'r-bioc-ensembldb', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-hilbertvis', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-limma', 'r-bioc-mergeomics', 'r-bioc-metagenomeseq', 'r-bioc-multtest', 'r-bioc-phyloseq', 'r-bioc-qvalue', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-acepack', 'r-cran-ade4', 'r-cran-adegenet', 'r-cran-adegraphics', 'r-cran-adephylo', 'r-cran-ape', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bbmle', 'r-cran-bio3d', 'r-cran-bitops', 'r-cran-blockmodeling', 'r-cran-bold', 'r-cran-boot', 'r-cran-brew', 'r-cran-catools', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cluster', 'r-cran-coda', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-combinat', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-deldir', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-distory', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-ellipse', 'r-cran-evaluate', 'r-cran-fail', 'r-cran-fastcluster', 'r-cran-fastmatch', 'r-cran-fields', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-g.data', 'r-cran-gam', 'r-cran-gdata', 'r-cran-genabel', 'r-cran-genabel.data', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glmnet', 'r-cran-globals', 'r-cran-gmodels', 'r-cran-googlevis', 'r-cran-gplots', 'r-cran-gridbase', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-igraph', 'r-cran-inline', 'r-cran-irlba', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-learnbayes', 'r-cran-listenv', 'r-cran-littler', 'r-cran-luminescence', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-minpack.lm', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nmf', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-optparse', 'r-cran-permute', 'r-cran-phangorn', 'r-cran-phylobase', 'r-cran-pkgkitten', 'r-cran-pkgmaker', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-proto', 'r-cran-pscbs', 'r-cran-qtl', 'r-cran-quadprog', 'r-cran-r.cache', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-randomforest', 'r-cran-raster', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppgsl', 'r-cran-rcurl', 'r-cran-readxl', 'r-cran-registry', 'r-cran-rentrez', 'r-cran-reshape', 'r-cran-reshape2', 'r-cran-rgl', 'r-cran-ritis', 'r-cran-rlumshiny', 'r-cran-rncl', 'r-cran-rnexml', 'r-cran-rngtools', 'r-cran-rocr', 'r-cran-rotl', 'r-cran-rpart', 'r-cran-rredlist', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-scatterd3', 'r-cran-segmented', 'r-cran-sendmailr', 'r-cran-seqinr', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinybs', 'r-cran-snow', 'r-cran-solrium', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spam', 'r-cran-spatial', 'r-cran-spdep', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-taxize', 'r-cran-tcltk2', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-treescape', 'r-cran-uuid', 'r-cran-vegan', 'r-cran-viridis', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'r-doc-html', 'r-mathlib', 'r-other-mott-happy.hbrem', 'r-recommended', 'rake', 'rambo-k', 'rapmap', 'rasmol', 'raster3d', 'rate4site', 'raxml', 'ray', 'rdp-alignment', 'rdp-classifier', 'rdp-classifier-doc', 'rdp-readseq', 'readseq', 'reapr', 'relion-bin', 'rename', 'repeatmasker-recon', 'reprof', 'rhino', 'rna-star', 'rnahybrid', 'roary', 'rsem', 'rsync', 'rtax', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby2.1', 'ruby2.3', 'rubygems-integration', 'saint', 'salmon', 'samtools', 'sane-utils', 'science-config', 'science-tasks', 'scrm', 'scythe', 'seaview', 'seer', 'seqan-apps', 'seqprep', 'seqtk', 'sga', 'sgml-base', 'shared-mime-info', 'sibsim4', 'sickle', 'sigma-align', 'sim4', 'sim4db', 'smalt', 'smithwaterman', 'smrtanalysis', 'snap', 'snap-aligner', 'sniffles', 'snp-sites', 'snpomatic', 'soapdenovo', 'soapdenovo2', 'sortmerna', 'spaced', 'spades', 'sphinx-common', 'sphinx-doc', 'sphinx-rtd-theme-common', 'sprai', 'spread-phy', 'sqlite3', 'squizz', 'sra-toolkit', 'sra-toolkit-libs0', 'srst2', 'ssake', 'ssl-cert', 'sspace', 'ssw-align', 'stacks', 'staden', 'staden-common', 'staden-io-lib-utils', 'steptalk', 'subread', 'suitename', 'sumaclust', 'sumatra', 'sumtrees', 'surankco', 'swarm', 'swi-prolog', 'swi-prolog-nox', 'swi-prolog-x', 'sysstat', 't-coffee', 't1utils', 'tabix', 'tantan', 'tasksel', 'tasksel-data', 'tcl', 'tcl8.6', 'tcllib', 'tcpd', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-binaries', 'texlive-extra-utils', 'texlive-font-utils', 'texlive-fonts-extra', 'texlive-fonts-extra-doc', 'texlive-fonts-recommended', 'texlive-fonts-recommended-doc', 'texlive-generic-extra', 'texlive-generic-recommended', 'texlive-latex-base', 'texlive-latex-base-doc', 'texlive-latex-extra', 'texlive-latex-extra-doc', 'texlive-latex-recommended', 'texlive-latex-recommended-doc', 'texlive-math-extra', 'texlive-pictures', 'texlive-pictures-doc', 'texlive-pstricks', 'texlive-pstricks-doc', 'texlive-science', 'texlive-science-doc', 'theseus', 'tigr-glimmer', 'time', 'tipa', 'tk', 'tk-table:amd64', 'tk8.6', 'tk8.6-blt2.5', 'tklib', 'tm-align', 'tophat', 'topp', 'toppred', 'transdecoder', 'transrate-tools', 'transtermhp', 'tree-puzzle', 'tree-puzzle-doc', 'treeview', 'treeviewx', 'trimmomatic', 'trinityrnaseq', 'trinityrnaseq-examples', 'ttf-adf-accanthis', 'ttf-adf-gillius', 'ttf-adf-universalis', 'ttf-bitstream-vera', 'ttf-dejavu', 'ttf-dejavu-core', 'ttf-dejavu-extra', 'ttf-liberation', 'uc-echo', 'ucf', 'unzip', 'update-inetd', 'varna', 'vcftools', 'velvet', 'velvetoptimiser', 'vprerex', 'vsearch', 'wigeon', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'x11proto-core-dev', 'x11proto-input-dev', 'x11proto-kb-dev', 'xauth', 'xbitmaps', 'xdg-user-dirs', 'xdg-utils', 'xfonts-100dpi', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xorg-sgml-doctools', 'xsltproc', 'xterm', 'xtrans-dev', 'xz-utils', 'zalign', 'zip', 'zlib1g-dev:amd64'] 40m42.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg', '--purge', 'science-biology'] 40m42.0s DUMP: dpkg: warning: ignoring request to remove science-biology which isn't installed 40m42.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg', '--purge', 'science-biology'] 40m42.0s INFO: Running scripts post_purge 40m42.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_purge_exceptions'] 40m42.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_purge_exceptions'] 40m42.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg', '--purge', '--pending'] 40m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg', '--purge', '--pending'] 40m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg', '--remove', '--pending'] 40m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg', '--remove', '--pending'] 40m42.1s INFO: Running scripts post_test 40m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_test_exceptions'] 40m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'tmp/scripts/post_test_exceptions'] 40m42.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 40m42.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 40m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg-divert', '--list'] 40m42.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 40m42.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'dpkg-divert', '--list'] 40m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', 'clean'] 40m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz80oq68m', 'apt-get', 'clean'] 40m43.6s DEBUG: Recording chroot state 40m44.5s INFO: Warning: Package purging left files on system: /etc/at-spi2/ not owned /etc/sane.d/ owned by: sane-utils, libsane-common, libsane-extras:amd64 /etc/sane.d/v4l.conf.dpkg-remove not owned /etc/texmf/ owned by: texlive-math-extra, texlive-base, tex-common /etc/texmf/hyphen.d/ not owned /usr/share/metaphlan2/ owned by: metaphlan2 /usr/share/metaphlan2/db_v20/ owned by: metaphlan2 /var/lib/GNUstep/ not owned 40m45.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/proc/sys/fs/binfmt_misc'] 40m45.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/proc/sys/fs/binfmt_misc'] 40m45.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/shm'] 40m45.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/shm'] 40m45.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/console'] 40m45.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/console'] 40m45.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/ptmx'] 40m45.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/ptmx'] 40m45.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/pts'] 40m45.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/dev/pts'] 40m45.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/proc'] 40m45.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz80oq68m/proc'] 40m45.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 40m45.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz80oq68m'] 40m45.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpz80oq68m 40m45.4s INFO: PASS: Upgrading between Debian distributions. 40m45.4s INFO: PASS: All tests. 40m45.4s INFO: piuparts run ends. ret=0 End: 2022-10-30 10:50:07 GMT