Start: 2023-02-02 02:12:28 GMT [jessie] Package: librelion+mpi-dev Source: relion Version: 1.3+dfsg-2 Installed-Size: 6306 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: librelion+mpi-1.3-1 (= 1.3+dfsg-2), librelion-dev-common Conflicts: librelion+gui-dev, librelion+mpi+gui-dev, librelion-dev Description: C++ API for RELION (3D reconstructions in cryo-electron microscopy) Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description-md5: 83871c4cefb8b43bd68c55d36218106c Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/r/relion/librelion+mpi-dev_1.3+dfsg-2_amd64.deb Size: 780886 MD5sum: 17135803bf6d22b37aefd65efdd56623 SHA1: 83e23cfde89601969f9ea6f3beee808345badec6 SHA256: 4e779bf7952ef3e36d4439a609b5d4ebcc5728d4a8aa07a23036f5961ff517e6 [jessie-lts] Package: librelion+mpi-dev Source: relion Version: 1.3+dfsg-2 Installed-Size: 6306 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: librelion+mpi-1.3-1 (= 1.3+dfsg-2), librelion-dev-common Conflicts: librelion+gui-dev, librelion+mpi+gui-dev, librelion-dev Description: C++ API for RELION (3D reconstructions in cryo-electron microscopy) Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description-md5: 83871c4cefb8b43bd68c55d36218106c Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/r/relion/librelion+mpi-dev_1.3+dfsg-2_amd64.deb Size: 780886 MD5sum: 17135803bf6d22b37aefd65efdd56623 SHA1: 83e23cfde89601969f9ea6f3beee808345badec6 SHA256: 4e779bf7952ef3e36d4439a609b5d4ebcc5728d4a8aa07a23036f5961ff517e6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -S /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt librelion+mpi-dev=1.3+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -S /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt librelion+mpi-dev=1.3+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpl0rmjp_w 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpl0rmjp_w 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpl0rmjp_w/tmp/scripts/ 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpl0rmjp_w/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'apt-get', 'update'] 0m4.1s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Ign http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main Translation-en Hit http://deb.debian.org jessie/main amd64 Packages Reading package lists... W: GPG error: http://deb.debian.org jessie Release: The following signatures were invalid: KEYEXPIRED 1668891673 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'apt-get', 'update'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'apt-get', '-yf', 'dist-upgrade'] 0m4.3s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'apt-get', '-yf', 'dist-upgrade'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.5s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.5s INFO: Running scripts post_setup 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m5.4s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! init-system-helpers ucf E: There are problems and -y was used without --force-yes 0m5.4s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w', 'tmp/scripts/post_setup_jessie-fake-essential'] *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! init-system-helpers ucf E: There are problems and -y was used without --force-yes 0m5.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/shm'] 0m5.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/shm'] 0m5.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/console'] 0m5.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/console'] 0m5.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/ptmx'] 0m5.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/ptmx'] 0m5.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/pts'] 0m5.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/dev/pts'] 0m5.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/proc'] 0m5.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w/proc'] 0m5.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w'] 0m5.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpl0rmjp_w'] 0m5.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpl0rmjp_w 0m5.8s ERROR: piuparts run ends. ret=1 End: 2023-02-02 02:12:34 GMT