Start: 2022-01-11 13:06:30 GMT [jessie] Package: libsbml5-perl Source: libsbml Version: 5.10.0+dfsg-1 Installed-Size: 18994 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: libsbml-perl Depends: libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libperl5.20 (>= 5.20.0), libstdc++6 (>= 4.9), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4), perl (>= 5.20.0-6), perlapi-5.20.0 Conflicts: libsbml3-perl Description: System Biology Markup Language library - Perl binding Homepage: http://www.sbml.org/ Description-md5: fe63da30de16db3d31ecfb471f59d896 Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl Section: perl Priority: optional Filename: pool/main/libs/libsbml/libsbml5-perl_5.10.0+dfsg-1_amd64.deb Size: 2973340 MD5sum: 04e888eb0f7aafc236f9a1781be5a4dd SHA1: 321c5d5bff5783465a69048e6f9efa7650f5b4ba SHA256: 426512a305599168b4ecfd309204e3ac083cf9b0addafb9994bb8928a73f43b2 [jessie-lts] Package: libsbml5-perl Source: libsbml Version: 5.10.0+dfsg-1 Installed-Size: 18994 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: libsbml-perl Depends: libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libperl5.20 (>= 5.20.0), libstdc++6 (>= 4.9), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4), perl (>= 5.20.0-6), perlapi-5.20.0 Conflicts: libsbml3-perl Description: System Biology Markup Language library - Perl binding Homepage: http://www.sbml.org/ Description-md5: fe63da30de16db3d31ecfb471f59d896 Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl Section: perl Priority: optional Filename: pool/main/libs/libsbml/libsbml5-perl_5.10.0+dfsg-1_amd64.deb Size: 2973340 MD5sum: 04e888eb0f7aafc236f9a1781be5a4dd SHA1: 321c5d5bff5783465a69048e6f9efa7650f5b4ba SHA256: 426512a305599168b4ecfd309204e3ac083cf9b0addafb9994bb8928a73f43b2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt libsbml5-perl=5.10.0+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt libsbml5-perl=5.10.0+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpinwlhlhr 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpinwlhlhr 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpinwlhlhr/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpinwlhlhr/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', 'update'] 0m3.2s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', 'update'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s INFO: Running scripts post_setup 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_dummy_users'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_dummy_users'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m5.3s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (3801 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat 0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m6.0s INFO: Running scripts is_testable 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s INFO: Running scripts pre_test 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_test_root_password'] 0m6.0s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_test_root_password'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'show', '--no-all-versions', 'libsbml5-perl'] 0m6.1s DUMP: Package: libsbml5-perl Source: libsbml Version: 5.10.0+dfsg-1 Installed-Size: 18994 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: libsbml-perl Depends: libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libperl5.20 (>= 5.20.0), libstdc++6 (>= 4.9), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4), perl (>= 5.20.0-6), perlapi-5.20.0 Conflicts: libsbml3-perl Description-en: System Biology Markup Language library - Perl binding LibSBML is a library designed to help you read, write, manipulate, translate, and validate SBML files and data streams. It is not an application itself (though it does come with many example programs), but rather a library you can embed in your own applications. This package contains the Perl binding of LibSBML. Description-md5: fe63da30de16db3d31ecfb471f59d896 Homepage: http://www.sbml.org/ Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl Section: perl Priority: optional Filename: pool/main/libs/libsbml/libsbml5-perl_5.10.0+dfsg-1_amd64.deb Size: 2973340 MD5sum: 04e888eb0f7aafc236f9a1781be5a4dd SHA1: 321c5d5bff5783465a69048e6f9efa7650f5b4ba SHA256: 426512a305599168b4ecfd309204e3ac083cf9b0addafb9994bb8928a73f43b2 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'show', '--no-all-versions', 'libsbml5-perl'] 0m6.1s INFO: apt-cache knows about the following packages: libsbml5-perl 0m6.1s INFO: Running scripts pre_install 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_database-server'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_database-server'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy'] 0m6.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy', 'libsbml5-perl'] 0m6.2s DUMP: libsbml5-perl: Installed: (none) Candidate: 5.10.0+dfsg-1 Version table: 5.10.0+dfsg-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy', 'libsbml5-perl'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-y', 'install', 'libsbml5-perl'] 0m8.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libgdbm3 libperl5.20 libxml2 perl perl-modules Suggested packages: perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl liblog-message-simple-perl liblog-message-perl libobject-accessor-perl Recommended packages: xml-core netbase rename libarchive-extract-perl libmodule-pluggable-perl libpod-latex-perl libterm-ui-perl libtext-soundex-perl libcgi-pm-perl libmodule-build-perl libpackage-constants-perl The following NEW packages will be installed: libgdbm3 libperl5.20 libsbml5-perl libxml2 perl perl-modules 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 8996 kB of archives. After this operation, 54.9 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:3 http://deb.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:4 http://deb.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:5 http://deb.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u11 [1362 B] Get:6 http://deb.debian.org/debian/ jessie/main libsbml5-perl amd64 5.10.0+dfsg-1 [2973 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8996 kB in 0s (24.6 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-13.1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u6_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Selecting previously unselected package perl-modules. Preparing to unpack .../perl-modules_5.20.2-3+deb8u11_all.deb ... Unpacking perl-modules (5.20.2-3+deb8u11) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl (5.20.2-3+deb8u11) ... Selecting previously unselected package libperl5.20. Preparing to unpack .../libperl5.20_5.20.2-3+deb8u11_amd64.deb ... Unpacking libperl5.20 (5.20.2-3+deb8u11) ... Selecting previously unselected package libsbml5-perl. Preparing to unpack .../libsbml5-perl_5.10.0+dfsg-1_amd64.deb ... Unpacking libsbml5-perl (5.10.0+dfsg-1) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up perl (5.20.2-3+deb8u11) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libperl5.20 (5.20.2-3+deb8u11) ... Setting up libsbml5-perl (5.10.0+dfsg-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-y', 'install', 'libsbml5-perl'] 0m8.7s INFO: Running scripts post_install 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_install_exceptions'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_install_exceptions'] 0m8.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m9.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m9.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpinwlhlhr to jessie-lts 0m9.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main deb http://security.debian.org jessie/updates main 0m9.3s INFO: Running scripts pre_distupgrade 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', 'update'] 0m11.4s DUMP: Get:1 http://security.debian.org jessie/updates InRelease [44.9 kB] Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Get:2 http://security.debian.org jessie/updates/main amd64 Packages [781 kB] Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Get:3 http://security.debian.org jessie/updates/main Translation-en [401 kB] Fetched 1227 kB in 0s (1579 kB/s) Reading package lists... 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', 'update'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-yf', 'dist-upgrade'] 0m17.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt bash e2fslibs e2fsprogs gcc-4.9-base libapt-pkg4.12 libbz2-1.0 libcomerr2 libgcc1 libgcrypt20 libperl5.20 libss2 libstdc++6 libsystemd0 libudev1 libxml2 perl perl-base perl-modules systemd systemd-sysv tar tzdata udev zlib1g 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 16.9 MB of archives. After this operation, 3880 kB of additional disk space will be used. Get:1 http://security.debian.org/ jessie/updates/main bash amd64 4.3-11+deb8u2 [1173 kB] Get:2 http://security.debian.org/ jessie/updates/main e2fslibs amd64 1.42.12-2+deb8u2 [186 kB] Get:3 http://security.debian.org/ jessie/updates/main e2fsprogs amd64 1.42.12-2+deb8u2 [751 kB] Get:4 http://security.debian.org/ jessie/updates/main perl amd64 5.20.2-3+deb8u12 [2658 kB] Get:5 http://security.debian.org/ jessie/updates/main libperl5.20 amd64 5.20.2-3+deb8u12 [1352 B] Get:6 http://security.debian.org/ jessie/updates/main perl-base amd64 5.20.2-3+deb8u12 [1231 kB] Get:7 http://security.debian.org/ jessie/updates/main perl-modules all 5.20.2-3+deb8u12 [2553 kB] Get:8 http://security.debian.org/ jessie/updates/main libbz2-1.0 amd64 1.0.6-7+deb8u2 [43.3 kB] Get:9 http://security.debian.org/ jessie/updates/main zlib1g amd64 1:1.2.8.dfsg-2+deb8u1 [88.3 kB] Get:10 http://security.debian.org/ jessie/updates/main tar amd64 1.27.1-2+deb8u2 [676 kB] Get:11 http://security.debian.org/ jessie/updates/main gcc-4.9-base amd64 4.9.2-10+deb8u2 [160 kB] Get:12 http://security.debian.org/ jessie/updates/main libgcc1 amd64 1:4.9.2-10+deb8u2 [39.4 kB] Get:13 http://security.debian.org/ jessie/updates/main libstdc++6 amd64 4.9.2-10+deb8u2 [273 kB] Get:14 http://security.debian.org/ jessie/updates/main libapt-pkg4.12 amd64 1.0.9.8.6 [794 kB] Get:15 http://security.debian.org/ jessie/updates/main apt amd64 1.0.9.8.6 [1109 kB] Get:16 http://security.debian.org/ jessie/updates/main libudev1 amd64 215-17+deb8u13 [58.8 kB] Get:17 http://security.debian.org/ jessie/updates/main udev amd64 215-17+deb8u13 [878 kB] Get:18 http://security.debian.org/ jessie/updates/main libcomerr2 amd64 1.42.12-2+deb8u2 [60.6 kB] Get:19 http://security.debian.org/ jessie/updates/main libss2 amd64 1.42.12-2+deb8u2 [64.9 kB] Get:20 http://security.debian.org/ jessie/updates/main libgcrypt20 amd64 1.6.3-2+deb8u8 [394 kB] Get:21 http://security.debian.org/ jessie/updates/main libsystemd0 amd64 215-17+deb8u13 [90.5 kB] Get:22 http://security.debian.org/ jessie/updates/main systemd amd64 215-17+deb8u13 [2555 kB] Get:23 http://security.debian.org/ jessie/updates/main systemd-sysv amd64 215-17+deb8u13 [37.5 kB] Get:24 http://security.debian.org/ jessie/updates/main libxml2 amd64 2.9.1+dfsg1-5+deb8u8 [803 kB] Get:25 http://security.debian.org/ jessie/updates/main tzdata all 2019c-0+deb8u1 [234 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.9 MB in 0s (33.0 MB/s) (Reading database ... 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Setting up perl-base (5.20.2-3+deb8u12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8700 files and directories currently installed.) Preparing to unpack .../perl-modules_5.20.2-3+deb8u12_all.deb ... Unpacking perl-modules (5.20.2-3+deb8u12) over (5.20.2-3+deb8u11) ... Preparing to unpack .../libbz2-1.0_1.0.6-7+deb8u2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-7+deb8u2) over (1.0.6-7+b3) ... Setting up libbz2-1.0:amd64 (1.0.6-7+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8699 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2+deb8u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-2+deb8u1) over (1:1.2.8.dfsg-2+b1) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-2+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8698 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.9.8.6_amd64.deb ... Unpacking libapt-pkg4.12:amd64 (1.0.9.8.6) over (1.0.9.8.4) ... Setting up libapt-pkg4.12:amd64 (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8698 files and directories currently installed.) Preparing to unpack .../apt_1.0.9.8.6_amd64.deb ... Unpacking apt (1.0.9.8.6) over (1.0.9.8.4) ... Setting up apt (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8698 files and directories currently installed.) Preparing to unpack .../libudev1_215-17+deb8u13_amd64.deb ... Unpacking libudev1:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libudev1:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8698 files and directories currently installed.) Preparing to unpack .../udev_215-17+deb8u13_amd64.deb ... Unpacking udev (215-17+deb8u13) over (215-17+deb8u7) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up udev (215-17+deb8u13) ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. A chroot environment has been detected, udev not started. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8698 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libcomerr2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8697 files and directories currently installed.) Preparing to unpack .../libss2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libss2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libss2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8696 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.3-2+deb8u8_amd64.deb ... Unpacking libgcrypt20:amd64 (1.6.3-2+deb8u8) over (1.6.3-2+deb8u4) ... Setting up libgcrypt20:amd64 (1.6.3-2+deb8u8) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8696 files and directories currently installed.) Preparing to unpack .../libsystemd0_215-17+deb8u13_amd64.deb ... Unpacking libsystemd0:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libsystemd0:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8696 files and directories currently installed.) Preparing to unpack .../systemd_215-17+deb8u13_amd64.deb ... Unpacking systemd (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd (215-17+deb8u13) ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8696 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u13_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd-sysv (215-17+deb8u13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8696 files and directories currently installed.) Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u8_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) over (2.9.1+dfsg1-5+deb8u6) ... Preparing to unpack .../tzdata_2019c-0+deb8u1_all.deb ... Unpacking tzdata (2019c-0+deb8u1) over (2018e-0+deb8u1) ... Setting up tzdata (2019c-0+deb8u1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 11 13:06:47 UTC 2022. Universal Time is now: Tue Jan 11 13:06:47 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up perl-modules (5.20.2-3+deb8u12) ... Setting up perl (5.20.2-3+deb8u12) ... Setting up libperl5.20 (5.20.2-3+deb8u12) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-yf', 'dist-upgrade'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.5s DUMP: ea587cb5da6f95fbc79bf1681671e909 - 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'show', '--no-all-versions', 'libsbml5-perl'] 0m17.5s DUMP: Package: libsbml5-perl Source: libsbml Version: 5.10.0+dfsg-1 Installed-Size: 18994 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: libsbml-perl Depends: libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libperl5.20 (>= 5.20.0), libstdc++6 (>= 4.9), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4), perl (>= 5.20.0-6), perlapi-5.20.0 Conflicts: libsbml3-perl Description-en: System Biology Markup Language library - Perl binding LibSBML is a library designed to help you read, write, manipulate, translate, and validate SBML files and data streams. It is not an application itself (though it does come with many example programs), but rather a library you can embed in your own applications. This package contains the Perl binding of LibSBML. Description-md5: fe63da30de16db3d31ecfb471f59d896 Homepage: http://www.sbml.org/ Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl Section: perl Priority: optional Filename: pool/main/libs/libsbml/libsbml5-perl_5.10.0+dfsg-1_amd64.deb Size: 2973340 MD5sum: 04e888eb0f7aafc236f9a1781be5a4dd SHA1: 321c5d5bff5783465a69048e6f9efa7650f5b4ba SHA256: 426512a305599168b4ecfd309204e3ac083cf9b0addafb9994bb8928a73f43b2 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'show', '--no-all-versions', 'libsbml5-perl'] 0m17.5s INFO: apt-cache knows about the following packages: libsbml5-perl 0m17.5s INFO: Running scripts pre_install 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_database-server'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_database-server'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_exceptions'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_extras'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_extras'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy'] 0m17.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy', 'libsbml5-perl'] 0m17.6s DUMP: libsbml5-perl: Installed: 5.10.0+dfsg-1 Candidate: 5.10.0+dfsg-1 Version table: *** 5.10.0+dfsg-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy', 'libsbml5-perl'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-y', 'install', 'libsbml5-perl'] 0m17.8s DUMP: Reading package lists... Building dependency tree... Reading state information... libsbml5-perl is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-y', 'install', 'libsbml5-perl'] 0m17.8s INFO: Running scripts post_install 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_install_exceptions'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_install_exceptions'] 0m17.8s INFO: Running scripts post_distupgrade 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m18.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m18.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m18.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m18.6s INFO: Running scripts pre_install 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_database-server'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_database-server'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_exceptions'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_exceptions'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_extras'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_extras'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy'] 0m18.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy', 'libsbml5-perl'] 0m18.7s DUMP: libsbml5-perl: Installed: 5.10.0+dfsg-1 Candidate: 5.10.0+dfsg-1 Version table: *** 5.10.0+dfsg-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-cache', 'policy', 'libsbml5-perl'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-y', 'install', 'libsbml5-perl=5.10.0+dfsg-1'] 0m19.0s DUMP: Reading package lists... Building dependency tree... Reading state information... libsbml5-perl is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', '-y', 'install', 'libsbml5-perl=5.10.0+dfsg-1'] 0m19.0s INFO: Running scripts post_install 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_install_exceptions'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_install_exceptions'] 0m19.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m19.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m20.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', '-ac', '--ignore-obsolete'] 0m20.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', '-ac', '--ignore-obsolete'] 0m20.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.9s DUMP: 0.15.2 0m20.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.9s INFO: Running adequate version 0.15.2 now. 0m20.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'libsbml5-perl'] 0m21.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'libsbml5-perl'] 0m21.0s INFO: Running scripts pre_remove 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_exceptions'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/pre_remove_exceptions'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.8s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.6 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+deb8u2 install ok installed e2fsprogs e2fsprogs 1.42.12-2+deb8u2 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u2 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.6 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+deb8u2 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+deb8u2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u2 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u8 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libperl5.20 libperl5.20 5.20.2-3+deb8u12 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libsbml5-perl libsbml5-perl 5.10.0+dfsg-1 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+deb8u2 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u13 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u13 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u8 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl perl 5.20.2-3+deb8u12 install ok installed perl-base perl-base 5.20.2-3+deb8u12 install ok installed perl-modules perl-modules 5.20.2-3+deb8u12 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u13 install ok installed systemd-sysv systemd-sysv 215-17+deb8u13 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u2 install ok installed tzdata tzdata 2019c-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u13 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+deb8u1 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', 'remove', 'libgdbm3:amd64', 'libperl5.20', 'libxml2:amd64', 'perl', 'perl-modules', 'libsbml5-perl'] 0m22.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libgdbm3 libperl5.20 libsbml5-perl libxml2 perl perl-modules 0 upgraded, 0 newly installed, 6 to remove and 0 not upgraded. After this operation, 54.9 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8699 files and directories currently installed.) Removing libsbml5-perl (5.10.0+dfsg-1) ... Removing perl (5.20.2-3+deb8u12) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing libperl5.20 (5.20.2-3+deb8u12) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) ... Removing perl-modules (5.20.2-3+deb8u12) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', 'remove', 'libgdbm3:amd64', 'libperl5.20', 'libxml2:amd64', 'perl', 'perl-modules', 'libsbml5-perl'] 0m22.2s INFO: Running scripts post_remove 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_remove_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_remove_exceptions'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg', '--purge', 'libgdbm3:amd64', 'libperl5.20', 'libxml2:amd64', 'perl', 'perl-modules'] 0m22.3s DUMP: (Reading database ... 7476 files and directories currently installed.) Removing libgdbm3:amd64 (1.8.3-13.1) ... Purging configuration files for libgdbm3:amd64 (1.8.3-13.1) ... dpkg: warning: ignoring request to remove libperl5.20 which isn't installed Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) ... Purging configuration files for libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) ... dpkg: warning: ignoring request to remove perl which isn't installed Removing perl-modules (5.20.2-3+deb8u12) ... Purging configuration files for perl-modules (5.20.2-3+deb8u12) ... 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg', '--purge', 'libgdbm3:amd64', 'libperl5.20', 'libxml2:amd64', 'perl', 'perl-modules'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg', '--purge', 'libsbml5-perl'] 0m22.3s DUMP: dpkg: warning: ignoring request to remove libsbml5-perl which isn't installed 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg', '--purge', 'libsbml5-perl'] 0m22.3s INFO: Running scripts post_purge 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_purge_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_purge_exceptions'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg', '--purge', '--pending'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg', '--purge', '--pending'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg', '--remove', '--pending'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg', '--remove', '--pending'] 0m22.3s INFO: Running scripts post_test 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_test_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'tmp/scripts/post_test_exceptions'] 0m22.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m22.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg-divert', '--list'] 0m22.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'dpkg-divert', '--list'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', 'clean'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr', 'apt-get', 'clean'] 0m22.7s DEBUG: Recording chroot state 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/shm'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/shm'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/console'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/console'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/ptmx'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/ptmx'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/pts'] 0m23.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/dev/pts'] 0m23.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/proc'] 0m23.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr/proc'] 0m23.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m24.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpinwlhlhr'] 0m24.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpinwlhlhr 0m24.0s INFO: PASS: Upgrading between Debian distributions. 0m24.0s INFO: PASS: All tests. 0m24.0s INFO: piuparts run ends. ret=0 End: 2022-01-11 13:06:54 GMT