Start: 2022-11-17 02:13:26 GMT [jessie] Package: libtfbs-perl Source: libtfbs-perl (0.6.1+dfsg-1) Version: 0.6.1+dfsg-1+b1 Installed-Size: 720 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.14), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description: scanning DNA sequence with a position weight matrix Homepage: http://tfbs.genereg.net Description-md5: 09989d886916236509d34feced92018d Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.6.1+dfsg-1+b1_amd64.deb Size: 233510 MD5sum: c468df37a477f4d1431542623e00ce16 SHA1: 892679ae52b122c5534da12151e28cf9e238823f SHA256: b5f53c9c7d1bc7cdf40f8b76bd264cb142de6fbafbfbb30ca9cec5dbd39fbbe6 [jessie-lts] Package: libtfbs-perl Source: libtfbs-perl (0.6.1+dfsg-1) Version: 0.6.1+dfsg-1+b1 Installed-Size: 720 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.14), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description: scanning DNA sequence with a position weight matrix Homepage: http://tfbs.genereg.net Description-md5: 09989d886916236509d34feced92018d Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.6.1+dfsg-1+b1_amd64.deb Size: 233510 MD5sum: c468df37a477f4d1431542623e00ce16 SHA1: 892679ae52b122c5534da12151e28cf9e238823f SHA256: b5f53c9c7d1bc7cdf40f8b76bd264cb142de6fbafbfbb30ca9cec5dbd39fbbe6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt libtfbs-perl=0.6.1+dfsg-1+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt libtfbs-perl=0.6.1+dfsg-1+b1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp3bcg1aqj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp3bcg1aqj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp3bcg1aqj/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmp3bcg1aqj/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', 'update'] 0m3.0s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_dummy_users'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_dummy_users'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.7s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (3710 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_minimize'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_minimize'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_zz_backports'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_setup_zz_backports'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat 0m4.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m5.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m5.1s INFO: Running scripts is_testable 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/is_testable_uninstallable'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/is_testable_uninstallable'] 0m5.1s INFO: Running scripts pre_test 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_test_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_test_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_test_root_password'] 0m5.1s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_test_root_password'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m5.2s DUMP: Package: libtfbs-perl Source: libtfbs-perl (0.6.1+dfsg-1) Version: 0.6.1+dfsg-1+b1 Installed-Size: 720 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.14), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description-en: scanning DNA sequence with a position weight matrix The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences. . If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136". Description-md5: 09989d886916236509d34feced92018d Homepage: http://tfbs.genereg.net Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.6.1+dfsg-1+b1_amd64.deb Size: 233510 MD5sum: c468df37a477f4d1431542623e00ce16 SHA1: 892679ae52b122c5534da12151e28cf9e238823f SHA256: b5f53c9c7d1bc7cdf40f8b76bd264cb142de6fbafbfbb30ca9cec5dbd39fbbe6 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m5.2s INFO: apt-cache knows about the following packages: libtfbs-perl 0m5.2s INFO: Running scripts pre_install 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy'] 0m5.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy', 'libtfbs-perl'] 0m5.2s DUMP: libtfbs-perl: Installed: (none) Candidate: 0.6.1+dfsg-1+b1 Version table: 0.6.1+dfsg-1+b1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy', 'libtfbs-perl'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m18.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bioperl ca-certificates fontconfig-config fonts-dejavu-core libbio-perl-perl libdata-stag-perl libdbi-perl libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd3 libgdbm3 libgfortran3 libgsl0ldbl libhdf4-0-alt libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libpng12-0 libproj0 libquadmath0 libssl1.0.0 libterm-readkey-perl libtiff5 libtimedate-perl liburi-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 netbase openssl pdl perl perl-modules proj-data Suggested packages: groff-base libxml-sax-expatxs-perl libnet-daemon-perl libsql-statement-perl libgd-tools gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html libhdf4-doc libhdf4-alt-dev hdf4-tools libnetcdf4 libdata-dump-perl libcrypt-ssleay-perl libmime-base64-perl proj-bin libauthen-ntlm-perl libpgplot-perl netpbm imagemagick libastro-fits-header-perl libinline-perl doc-base libextutils-f77-perl libdevel-repl-perl libopengl-perl libgl1-mesa-glx libgl1 libpdl-fftw-perl libpdl-graphics-plplot-perl make libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl liblog-message-simple-perl liblog-message-perl libobject-accessor-perl Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libgd-gd2-perl libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libstorable-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libxml-libxslt-perl libmldbm-perl libhtml-format-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl ifupdown libterm-readline-gnu-perl libterm-readline-perl-perl rename libarchive-extract-perl libmodule-pluggable-perl libpod-latex-perl libterm-ui-perl libtext-soundex-perl libcgi-pm-perl libmodule-build-perl libpackage-constants-perl The following NEW packages will be installed: bioperl ca-certificates fontconfig-config fonts-dejavu-core libbio-perl-perl libdata-stag-perl libdbi-perl libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd3 libgdbm3 libgfortran3 libgsl0ldbl libhdf4-0-alt libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libpng12-0 libproj0 libquadmath0 libssl1.0.0 libterm-readkey-perl libtfbs-perl libtiff5 libtimedate-perl liburi-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 netbase openssl pdl perl perl-modules proj-data 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After this operation, 101 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:3 http://deb.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:4 http://deb.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:5 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:6 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:7 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:8 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:9 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:10 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:11 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:12 http://deb.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:13 http://deb.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:14 http://deb.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:15 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:16 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:17 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:18 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:19 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:20 http://deb.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:21 http://deb.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:22 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:23 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:24 http://deb.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:25 http://deb.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:26 http://deb.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:27 http://deb.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:28 http://deb.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:29 http://deb.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:30 http://deb.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:31 http://deb.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:32 http://deb.debian.org/debian/ jessie/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:33 http://deb.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:34 http://deb.debian.org/debian/ jessie/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:35 http://deb.debian.org/debian/ jessie/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:36 http://deb.debian.org/debian/ jessie/main libgsl0ldbl amd64 1.16+dfsg-2 [819 kB] Get:37 http://deb.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:38 http://deb.debian.org/debian/ jessie/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:39 http://deb.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:40 http://deb.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:41 http://deb.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:42 http://deb.debian.org/debian/ jessie/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:43 http://deb.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:44 http://deb.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:45 http://deb.debian.org/debian/ jessie/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:46 http://deb.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:47 http://deb.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:48 http://deb.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:49 http://deb.debian.org/debian/ jessie/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:50 http://deb.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:51 http://deb.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:52 http://deb.debian.org/debian/ jessie/main libterm-readkey-perl amd64 2.32-1+b1 [28.0 kB] Get:53 http://deb.debian.org/debian/ jessie/main libhdf4-0-alt amd64 4.2.10-3 [271 kB] Get:54 http://deb.debian.org/debian/ jessie/main proj-data amd64 4.8.0-5 [2085 kB] Get:55 http://deb.debian.org/debian/ jessie/main libproj0 amd64 4.8.0-5 [144 kB] Get:56 http://deb.debian.org/debian/ jessie/main pdl amd64 1:2.007-4 [3941 kB] Get:57 http://deb.debian.org/debian/ jessie/main libtfbs-perl amd64 0.6.1+dfsg-1+b1 [234 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.4 MB in 1s (26.2 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-13.1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package perl-modules. Preparing to unpack .../perl-modules_5.20.2-3+deb8u11_all.deb ... Unpacking perl-modules (5.20.2-3+deb8u11) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl (5.20.2-3+deb8u11) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libpng12-0:amd64. Preparing to unpack .../libpng12-0_1.2.50-2+deb8u3_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.50-2+deb8u3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.5.2-3+deb8u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.34-1_all.deb ... Unpacking fonts-dejavu-core (2.34-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.0-6.3+deb8u1_all.deb ... Unpacking fontconfig-config (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.3.1-12) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../libtiff5_4.0.3-12.3+deb8u5_amd64.deb ... Unpacking libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Selecting previously unselected package libvpx1:amd64. Preparing to unpack .../libvpx1_1.3.0-3+deb8u1_amd64.deb ... Unpacking libvpx1:amd64 (1.3.0-3+deb8u1) ... 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Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../libhtml-parser-perl_3.71-1+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.71-1+b3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../libhtml-tree-perl_5.03-1_all.deb ... Unpacking libhtml-tree-perl (5.03-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../libio-html-perl_1.001-1_all.deb ... Unpacking libio-html-perl (1.001-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../liblwp-mediatypes-perl_6.02-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.02-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../libhttp-message-perl_6.06-1_all.deb ... Unpacking libhttp-message-perl (6.06-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../libhttp-cookies-perl_6.01-1_all.deb ... Unpacking libhttp-cookies-perl (6.01-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../libhttp-negotiate-perl_6.00-2_all.deb ... Unpacking libhttp-negotiate-perl (6.00-2) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../libnet-ssleay-perl_1.65-1+deb8u1_amd64.deb ... Unpacking libnet-ssleay-perl (1.65-1+deb8u1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../libio-socket-ssl-perl_2.002-2+deb8u3_all.deb ... Unpacking libio-socket-ssl-perl (2.002-2+deb8u3) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../libnet-http-perl_6.07-1_all.deb ... Unpacking libnet-http-perl (6.07-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../libwww-perl_6.08-1_all.deb ... Unpacking libwww-perl (6.08-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../liblwp-protocol-https-perl_6.06-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.06-2) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../libterm-readkey-perl_2.32-1+b1_amd64.deb ... Unpacking libterm-readkey-perl (2.32-1+b1) ... Selecting previously unselected package libhdf4-0-alt. Preparing to unpack .../libhdf4-0-alt_4.2.10-3_amd64.deb ... Unpacking libhdf4-0-alt (4.2.10-3) ... Selecting previously unselected package proj-data. Preparing to unpack .../proj-data_4.8.0-5_amd64.deb ... Unpacking proj-data (4.8.0-5) ... Selecting previously unselected package libproj0. Preparing to unpack .../libproj0_4.8.0-5_amd64.deb ... Unpacking libproj0 (4.8.0-5) ... Selecting previously unselected package pdl. Preparing to unpack .../pdl_1%3a2.007-4_amd64.deb ... Unpacking pdl (1:2.007-4) ... Selecting previously unselected package libtfbs-perl. Preparing to unpack .../libtfbs-perl_0.6.1+dfsg-1+b1_amd64.deb ... Unpacking libtfbs-perl (0.6.1+dfsg-1+b1) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up perl (5.20.2-3+deb8u11) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up libvpx1:amd64 (1.3.0-3+deb8u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up libgd3:amd64 (2.1.0-5+deb8u11) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up netbase (5.3) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done. Setting up libdbi-perl (1.631-3+b1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libgsl0ldbl (1.16+dfsg-2) ... Setting up liburi-perl (1.64-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libterm-readkey-perl (2.32-1+b1) ... Setting up libhdf4-0-alt (4.2.10-3) ... Setting up proj-data (4.8.0-5) ... Setting up libproj0 (4.8.0-5) ... Setting up pdl (1:2.007-4) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libwww-perl (6.08-1) ... Setting up libtfbs-perl (0.6.1+dfsg-1+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m18.1s INFO: Running scripts post_install 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_install_exceptions'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_install_exceptions'] 0m18.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m18.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m18.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp3bcg1aqj to jessie-lts 0m18.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main deb http://security.debian.org jessie/updates main 0m18.8s INFO: Running scripts pre_distupgrade 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', 'update'] 0m20.5s DUMP: Ign http://deb.debian.org jessie InRelease Get:1 http://security.debian.org jessie/updates InRelease [44.9 kB] Hit http://deb.debian.org jessie Release.gpg Get:2 http://security.debian.org jessie/updates/main amd64 Packages [781 kB] Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Get:3 http://security.debian.org jessie/updates/main Translation-en [401 kB] Fetched 1227 kB in 0s (1627 kB/s) Reading package lists... 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', 'update'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-yf', 'dist-upgrade'] 0m33.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt bash ca-certificates e2fslibs e2fsprogs gcc-4.9-base libapt-pkg4.12 libbz2-1.0 libcomerr2 libexpat1 libfreetype6 libgcc1 libgcrypt20 libgd3 libgfortran3 libjpeg62-turbo libquadmath0 libss2 libssl1.0.0 libstdc++6 libsystemd0 libtiff5 libudev1 libvpx1 libx11-6 libx11-data libxdmcp6 openssl perl perl-base perl-modules systemd systemd-sysv tar tzdata udev zlib1g 37 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 20.9 MB of archives. After this operation, 4092 kB of additional disk space will be used. Get:1 http://security.debian.org/ jessie/updates/main bash amd64 4.3-11+deb8u2 [1173 kB] Get:2 http://security.debian.org/ jessie/updates/main e2fslibs amd64 1.42.12-2+deb8u2 [186 kB] Get:3 http://security.debian.org/ jessie/updates/main e2fsprogs amd64 1.42.12-2+deb8u2 [751 kB] Get:4 http://security.debian.org/ jessie/updates/main perl amd64 5.20.2-3+deb8u12 [2658 kB] Get:5 http://security.debian.org/ jessie/updates/main perl-base amd64 5.20.2-3+deb8u12 [1231 kB] Get:6 http://security.debian.org/ jessie/updates/main perl-modules all 5.20.2-3+deb8u12 [2553 kB] Get:7 http://security.debian.org/ jessie/updates/main libbz2-1.0 amd64 1.0.6-7+deb8u2 [43.3 kB] Get:8 http://security.debian.org/ jessie/updates/main zlib1g amd64 1:1.2.8.dfsg-2+deb8u1 [88.3 kB] Get:9 http://security.debian.org/ jessie/updates/main tar amd64 1.27.1-2+deb8u2 [676 kB] Get:10 http://security.debian.org/ jessie/updates/main libquadmath0 amd64 4.9.2-10+deb8u2 [129 kB] Get:11 http://security.debian.org/ jessie/updates/main libgfortran3 amd64 4.9.2-10+deb8u2 [254 kB] Get:12 http://security.debian.org/ jessie/updates/main gcc-4.9-base amd64 4.9.2-10+deb8u2 [160 kB] Get:13 http://security.debian.org/ jessie/updates/main libgcc1 amd64 1:4.9.2-10+deb8u2 [39.4 kB] Get:14 http://security.debian.org/ jessie/updates/main libstdc++6 amd64 4.9.2-10+deb8u2 [273 kB] Get:15 http://security.debian.org/ jessie/updates/main libapt-pkg4.12 amd64 1.0.9.8.6 [794 kB] Get:16 http://security.debian.org/ jessie/updates/main apt amd64 1.0.9.8.6 [1109 kB] Get:17 http://security.debian.org/ jessie/updates/main libudev1 amd64 215-17+deb8u13 [58.8 kB] Get:18 http://security.debian.org/ jessie/updates/main udev amd64 215-17+deb8u13 [878 kB] Get:19 http://security.debian.org/ jessie/updates/main libcomerr2 amd64 1.42.12-2+deb8u2 [60.6 kB] Get:20 http://security.debian.org/ jessie/updates/main libss2 amd64 1.42.12-2+deb8u2 [64.9 kB] Get:21 http://security.debian.org/ jessie/updates/main libgcrypt20 amd64 1.6.3-2+deb8u8 [394 kB] Get:22 http://security.debian.org/ jessie/updates/main libsystemd0 amd64 215-17+deb8u13 [90.5 kB] Get:23 http://security.debian.org/ jessie/updates/main systemd amd64 215-17+deb8u13 [2555 kB] Get:24 http://security.debian.org/ jessie/updates/main systemd-sysv amd64 215-17+deb8u13 [37.5 kB] Get:25 http://security.debian.org/ jessie/updates/main libssl1.0.0 amd64 1.0.1t-1+deb8u12 [1049 kB] Get:26 http://security.debian.org/ jessie/updates/main libexpat1 amd64 2.1.0-6+deb8u6 [80.3 kB] Get:27 http://security.debian.org/ jessie/updates/main libfreetype6 amd64 2.5.2-3+deb8u4 [467 kB] Get:28 http://security.debian.org/ jessie/updates/main libjpeg62-turbo amd64 1:1.3.1-12+deb8u2 [117 kB] Get:29 http://security.debian.org/ jessie/updates/main libtiff5 amd64 4.0.3-12.3+deb8u10 [223 kB] Get:30 http://security.debian.org/ jessie/updates/main libvpx1 amd64 1.3.0-3+deb8u3 [600 kB] Get:31 http://security.debian.org/ jessie/updates/main libx11-data all 2:1.6.2-3+deb8u2 [126 kB] Get:32 http://security.debian.org/ jessie/updates/main libx11-6 amd64 2:1.6.2-3+deb8u2 [729 kB] Get:33 http://security.debian.org/ jessie/updates/main libgd3 amd64 2.1.0-5+deb8u14 [148 kB] Get:34 http://security.debian.org/ jessie/updates/main libxdmcp6 amd64 1:1.1.1-1+deb8u1 [24.7 kB] Get:35 http://security.debian.org/ jessie/updates/main tzdata all 2019c-0+deb8u1 [234 kB] Get:36 http://security.debian.org/ jessie/updates/main openssl amd64 1.0.1t-1+deb8u12 [666 kB] Get:37 http://security.debian.org/ jessie/updates/main ca-certificates all 20141019+deb8u4 [185 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.9 MB in 0s (42.5 MB/s) (Reading database ... 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Unpacking gcc-4.9-base:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13097 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9.2-10+deb8u2_amd64.deb ... Unpacking libgcc1:amd64 (1:4.9.2-10+deb8u2) over (1:4.9.2-10+deb8u1) ... Setting up libgcc1:amd64 (1:4.9.2-10+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13097 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.2-10+deb8u2_amd64.deb ... Unpacking libstdc++6:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13097 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.9.8.6_amd64.deb ... Unpacking libapt-pkg4.12:amd64 (1.0.9.8.6) over (1.0.9.8.4) ... Setting up libapt-pkg4.12:amd64 (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13097 files and directories currently installed.) Preparing to unpack .../apt_1.0.9.8.6_amd64.deb ... Unpacking apt (1.0.9.8.6) over (1.0.9.8.4) ... Setting up apt (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13097 files and directories currently installed.) Preparing to unpack .../libudev1_215-17+deb8u13_amd64.deb ... Unpacking libudev1:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libudev1:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13097 files and directories currently installed.) Preparing to unpack .../udev_215-17+deb8u13_amd64.deb ... Unpacking udev (215-17+deb8u13) over (215-17+deb8u7) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up udev (215-17+deb8u13) ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. A chroot environment has been detected, udev not started. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13097 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libcomerr2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13096 files and directories currently installed.) Preparing to unpack .../libss2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libss2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libss2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13095 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.3-2+deb8u8_amd64.deb ... Unpacking libgcrypt20:amd64 (1.6.3-2+deb8u8) over (1.6.3-2+deb8u4) ... Setting up libgcrypt20:amd64 (1.6.3-2+deb8u8) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13095 files and directories currently installed.) Preparing to unpack .../libsystemd0_215-17+deb8u13_amd64.deb ... Unpacking libsystemd0:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libsystemd0:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13095 files and directories currently installed.) Preparing to unpack .../systemd_215-17+deb8u13_amd64.deb ... Unpacking systemd (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd (215-17+deb8u13) ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13095 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u13_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd-sysv (215-17+deb8u13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13095 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u12_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u12) over (1.0.1t-1+deb8u8) ... Preparing to unpack .../libexpat1_2.1.0-6+deb8u6_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u6) over (2.1.0-6+deb8u4) ... Preparing to unpack .../libfreetype6_2.5.2-3+deb8u4_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u4) over (2.5.2-3+deb8u2) ... Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12+deb8u2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) over (1:1.3.1-12) ... Preparing to unpack .../libtiff5_4.0.3-12.3+deb8u10_amd64.deb ... Unpacking libtiff5:amd64 (4.0.3-12.3+deb8u10) over (4.0.3-12.3+deb8u5) ... Preparing to unpack .../libvpx1_1.3.0-3+deb8u3_amd64.deb ... Unpacking libvpx1:amd64 (1.3.0-3+deb8u3) over (1.3.0-3+deb8u1) ... Preparing to unpack .../libx11-data_2%3a1.6.2-3+deb8u2_all.deb ... Unpacking libx11-data (2:1.6.2-3+deb8u2) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libx11-6_2%3a1.6.2-3+deb8u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3+deb8u2) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libgd3_2.1.0-5+deb8u14_amd64.deb ... Unpacking libgd3:amd64 (2.1.0-5+deb8u14) over (2.1.0-5+deb8u11) ... Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+deb8u1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+deb8u1) over (1:1.1.1-1+b1) ... Preparing to unpack .../tzdata_2019c-0+deb8u1_all.deb ... Unpacking tzdata (2019c-0+deb8u1) over (2018e-0+deb8u1) ... Setting up tzdata (2019c-0+deb8u1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 17 02:13:52 UTC 2022. Universal Time is now: Thu Nov 17 02:13:52 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13097 files and directories currently installed.) Preparing to unpack .../openssl_1.0.1t-1+deb8u12_amd64.deb ... Unpacking openssl (1.0.1t-1+deb8u12) over (1.0.1t-1+deb8u8) ... Preparing to unpack .../ca-certificates_20141019+deb8u4_all.deb ... Unpacking ca-certificates (20141019+deb8u4) over (20141019+deb8u3) ... Setting up perl-modules (5.20.2-3+deb8u12) ... Setting up perl (5.20.2-3+deb8u12) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u2) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u2) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u6) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u4) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Setting up libvpx1:amd64 (1.3.0-3+deb8u3) ... Setting up libx11-data (2:1.6.2-3+deb8u2) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Setting up libgd3:amd64 (2.1.0-5+deb8u14) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Setting up openssl (1.0.1t-1+deb8u12) ... Setting up ca-certificates (20141019+deb8u4) ... Updating certificates in /etc/ssl/certs... 20 added, 42 removed; done. Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for ca-certificates (20141019+deb8u4) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-yf', 'dist-upgrade'] 0m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m33.9s DUMP: ea587cb5da6f95fbc79bf1681671e909 - 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m33.9s DUMP: Package: libtfbs-perl Source: libtfbs-perl (0.6.1+dfsg-1) Version: 0.6.1+dfsg-1+b1 Installed-Size: 720 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.14), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description-en: scanning DNA sequence with a position weight matrix The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences. . If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136". Description-md5: 09989d886916236509d34feced92018d Homepage: http://tfbs.genereg.net Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.6.1+dfsg-1+b1_amd64.deb Size: 233510 MD5sum: c468df37a477f4d1431542623e00ce16 SHA1: 892679ae52b122c5534da12151e28cf9e238823f SHA256: b5f53c9c7d1bc7cdf40f8b76bd264cb142de6fbafbfbb30ca9cec5dbd39fbbe6 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m33.9s INFO: apt-cache knows about the following packages: libtfbs-perl 0m33.9s INFO: Running scripts pre_install 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_database-server'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_database-server'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_exceptions'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_exceptions'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_extras'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_extras'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy'] 0m34.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy', 'libtfbs-perl'] 0m34.0s DUMP: libtfbs-perl: Installed: 0.6.1+dfsg-1+b1 Candidate: 0.6.1+dfsg-1+b1 Version table: *** 0.6.1+dfsg-1+b1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy', 'libtfbs-perl'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m34.2s DUMP: Reading package lists... Building dependency tree... Reading state information... libtfbs-perl is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m34.2s INFO: Running scripts post_install 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_install_exceptions'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_install_exceptions'] 0m34.2s INFO: Running scripts post_distupgrade 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_exceptions'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_exceptions'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m34.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m34.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m34.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m35.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m35.5s INFO: Running scripts pre_install 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_database-server'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_database-server'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_exceptions'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_exceptions'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_extras'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_extras'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy'] 0m35.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy', 'libtfbs-perl'] 0m35.6s DUMP: libtfbs-perl: Installed: 0.6.1+dfsg-1+b1 Candidate: 0.6.1+dfsg-1+b1 Version table: *** 0.6.1+dfsg-1+b1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-cache', 'policy', 'libtfbs-perl'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-y', 'install', 'libtfbs-perl=0.6.1+dfsg-1+b1'] 0m35.8s DUMP: Reading package lists... Building dependency tree... Reading state information... libtfbs-perl is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m35.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', '-y', 'install', 'libtfbs-perl=0.6.1+dfsg-1+b1'] 0m35.8s INFO: Running scripts post_install 0m35.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_install_exceptions'] 0m35.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_install_exceptions'] 0m35.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m36.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m37.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', '-ac', '--ignore-obsolete'] 0m38.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', '-ac', '--ignore-obsolete'] 0m38.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m38.1s DUMP: 0.15.6 0m38.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m38.1s INFO: Running adequate version 0.15.6 now. 0m38.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'libtfbs-perl'] 0m38.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'libtfbs-perl'] 0m38.1s INFO: Running scripts pre_remove 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_exceptions'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/pre_remove_exceptions'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m39.5s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.6 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u2 install ok installed bioperl bioperl 1.6.924-1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed ca-certificates ca-certificates 20141019+deb8u4 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+deb8u2 install ok installed e2fsprogs e2fsprogs 1.42.12-2+deb8u2 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u2 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.6 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libbio-perl-perl libbio-perl-perl 1.6.924-1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+deb8u2 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+deb8u2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdata-stag-perl libdata-stag-perl 0.13-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbi-perl libdbi-perl 1.631-3+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u6 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u4 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u2 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u8 install ok installed libgd3:amd64 libgd3 2.1.0-5+deb8u14 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgsl0ldbl libgsl0ldbl 1.16+dfsg-2 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2.10-3 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12+deb8u2 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libproj0 libproj0 4.8.0-5 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u2 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+deb8u2 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u12 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u13 install ok installed libterm-readkey-perl libterm-readkey-perl 2.32-1+b1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtfbs-perl libtfbs-perl 0.6.1+dfsg-1+b1 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u10 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u13 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u3 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u2 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+deb8u1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed openssl openssl 1.0.1t-1+deb8u12 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed pdl pdl 1:2.007-4 install ok installed perl perl 5.20.2-3+deb8u12 install ok installed perl-base perl-base 5.20.2-3+deb8u12 install ok installed perl-modules perl-modules 5.20.2-3+deb8u12 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed proj-data proj-data 4.8.0-5 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u13 install ok installed systemd-sysv systemd-sysv 215-17+deb8u13 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u2 install ok installed tzdata tzdata 2019c-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u13 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+deb8u1 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', 'remove', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'libbio-perl-perl', 'libdata-stag-perl', 'libdbi-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgsl0ldbl', 'libhdf4-0-alt', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libpng12-0:amd64', 'libproj0', 'libquadmath0:amd64', 'libssl1.0.0:amd64', 'libterm-readkey-perl', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvpx1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'netbase', 'openssl', 'pdl', 'perl', 'perl-modules', 'proj-data', 'libtfbs-perl'] 0m40.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bioperl ca-certificates fontconfig-config fonts-dejavu-core libbio-perl-perl libdata-stag-perl libdbi-perl libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd3 libgdbm3 libgfortran3 libgsl0ldbl libhdf4-0-alt libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libpng12-0 libproj0 libquadmath0 libssl1.0.0 libterm-readkey-perl libtfbs-perl libtiff5 libtimedate-perl liburi-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 netbase openssl pdl perl perl-modules proj-data 0 upgraded, 0 newly installed, 57 to remove and 0 not upgraded. After this operation, 101 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13075 files and directories currently installed.) Removing libtfbs-perl (0.6.1+dfsg-1+b1) ... Removing bioperl (1.6.924-1) ... Removing pdl (1:2.007-4) ... Removing libgd3:amd64 (2.1.0-5+deb8u14) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Removing libbio-perl-perl (1.6.924-1) ... Removing libdata-stag-perl (0.13-1) ... Removing libdbi-perl (1.631-3+b1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libgsl0ldbl (1.16+dfsg-2) ... Removing libhdf4-0-alt (4.2.10-3) ... Removing libio-string-perl (1.08-3) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libproj0 (4.8.0-5) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libterm-readkey-perl (2.32-1+b1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u3) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Removing libx11-data (2:1.6.2-3+deb8u2) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Removing proj-data (4.8.0-5) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing libwww-perl (6.08-1) ... Removing ca-certificates (20141019+deb8u4) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.00-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libfile-listing-perl (6.04-1) ... Removing libwww-robotrules-perl (6.01-1) ... Removing libnet-http-perl (6.07-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing openssl (1.0.1t-1+deb8u12) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing libtimedate-perl (2.3000-2) ... Removing netbase (5.3) ... Removing liburi-perl (1.64-1) ... Removing perl (5.20.2-3+deb8u12) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing perl-modules (5.20.2-3+deb8u12) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m40.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', 'remove', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'libbio-perl-perl', 'libdata-stag-perl', 'libdbi-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgsl0ldbl', 'libhdf4-0-alt', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libpng12-0:amd64', 'libproj0', 'libquadmath0:amd64', 'libssl1.0.0:amd64', 'libterm-readkey-perl', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvpx1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'netbase', 'openssl', 'pdl', 'perl', 'perl-modules', 'proj-data', 'libtfbs-perl'] 0m40.8s INFO: Running scripts post_remove 0m40.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_remove_exceptions'] 0m40.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_remove_exceptions'] 0m40.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg', '--purge', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'libbio-perl-perl', 'libdata-stag-perl', 'libdbi-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgsl0ldbl', 'libhdf4-0-alt', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libpng12-0:amd64', 'libproj0', 'libquadmath0:amd64', 'libssl1.0.0:amd64', 'libterm-readkey-perl', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvpx1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'netbase', 'openssl', 'pdl', 'perl', 'perl-modules', 'proj-data'] 0m41.3s DUMP: dpkg: warning: ignoring request to remove bioperl which isn't installed (Reading database ... 7499 files and directories currently installed.) Removing ca-certificates (20141019+deb8u4) ... Purging configuration files for ca-certificates (20141019+deb8u4) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u6) ... dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libgd3:amd64 (2.1.0-5+deb8u14) ... Purging configuration files for libgd3:amd64 (2.1.0-5+deb8u14) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Purging configuration files for libgdbm3:amd64 (1.8.3-13.1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libgsl0ldbl (1.16+dfsg-2) ... Purging configuration files for libgsl0ldbl (1.16+dfsg-2) ... Removing libhdf4-0-alt (4.2.10-3) ... Purging configuration files for libhdf4-0-alt (4.2.10-3) ... dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Purging configuration files for libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libproj0 (4.8.0-5) ... Purging configuration files for libproj0 (4.8.0-5) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed Removing libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Purging configuration files for libtiff5:amd64 (4.0.3-12.3+deb8u10) ... dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed Removing libvpx1:amd64 (1.3.0-3+deb8u3) ... Purging configuration files for libvpx1:amd64 (1.3.0-3+deb8u3) ... dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Purging configuration files for libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... Removing openssl (1.0.1t-1+deb8u12) ... Purging configuration files for openssl (1.0.1t-1+deb8u12) ... Removing pdl (1:2.007-4) ... Purging configuration files for pdl (1:2.007-4) ... dpkg: warning: ignoring request to remove perl which isn't installed Removing perl-modules (5.20.2-3+deb8u12) ... Purging configuration files for perl-modules (5.20.2-3+deb8u12) ... dpkg: warning: ignoring request to remove proj-data which isn't installed 0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg', '--purge', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'libbio-perl-perl', 'libdata-stag-perl', 'libdbi-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgsl0ldbl', 'libhdf4-0-alt', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl', 'libpng12-0:amd64', 'libproj0', 'libquadmath0:amd64', 'libssl1.0.0:amd64', 'libterm-readkey-perl', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvpx1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'netbase', 'openssl', 'pdl', 'perl', 'perl-modules', 'proj-data'] 0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg', '--purge', 'libtfbs-perl'] 0m41.3s DUMP: dpkg: warning: ignoring request to remove libtfbs-perl which isn't installed 0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg', '--purge', 'libtfbs-perl'] 0m41.3s INFO: Running scripts post_purge 0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_purge_exceptions'] 0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_purge_exceptions'] 0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg', '--purge', '--pending'] 0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg', '--purge', '--pending'] 0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg', '--remove', '--pending'] 0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg', '--remove', '--pending'] 0m41.4s INFO: Running scripts post_test 0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_test_exceptions'] 0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'tmp/scripts/post_test_exceptions'] 0m41.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m41.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg-divert', '--list'] 0m41.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'dpkg-divert', '--list'] 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', 'clean'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj', 'apt-get', 'clean'] 0m41.8s DEBUG: Recording chroot state 0m42.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/shm'] 0m42.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/shm'] 0m42.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/console'] 0m42.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/console'] 0m42.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/ptmx'] 0m42.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/ptmx'] 0m42.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/pts'] 0m42.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/dev/pts'] 0m42.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/proc'] 0m42.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj/proc'] 0m42.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m42.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp3bcg1aqj'] 0m42.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp3bcg1aqj 0m42.9s INFO: PASS: Upgrading between Debian distributions. 0m42.9s INFO: PASS: All tests. 0m42.9s INFO: piuparts run ends. ret=0 End: 2022-11-17 02:14:09 GMT