Start: 2022-09-16 08:19:35 GMT [jessie] Package: pymol Version: 1.7.2.1-1 Installed-Size: 17747 Maintainer: Debichem Team Architecture: amd64 Depends: python-numpy (>= 1:1.8.0), python-pmw, python-tk, python-numpy-abi9, python (>= 2.7), python (<< 2.8), python2.7:any, freeglut3, libc6 (>= 2.15), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglew1.10 (>= 1.10.0), libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.9) Recommends: apbs Description: Molecular Graphics System Homepage: http://www.pymol.org Description-md5: bfc8e8676a87c0058529a662aef95313 Python-Version: 2.7 Tag: field::biology:structural, field::chemistry, implemented-in::python, interface::3d, interface::x11, role::program, scope::utility, uitoolkit::tk, use::learning, use::viewing, works-with::image, x11::application Section: science Priority: optional Filename: pool/main/p/pymol/pymol_1.7.2.1-1_amd64.deb Size: 4867484 MD5sum: 8d943945ec6d3db06e3263f00a562aa6 SHA1: 564aada467983a37c57924893e588a28e9790bb3 SHA256: dee8d9e16f98ed7f1a4861d5024af2c8bf98324d5dddc84055d3a77d250d38ef [jessie-lts] Package: pymol Version: 1.7.2.1-1 Installed-Size: 17747 Maintainer: Debichem Team Architecture: amd64 Depends: python-numpy (>= 1:1.8.0), python-pmw, python-tk, python-numpy-abi9, python (>= 2.7), python (<< 2.8), python2.7:any, freeglut3, libc6 (>= 2.15), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglew1.10 (>= 1.10.0), libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.9) Recommends: apbs Description: Molecular Graphics System Homepage: http://www.pymol.org Description-md5: bfc8e8676a87c0058529a662aef95313 Python-Version: 2.7 Tag: field::biology:structural, field::chemistry, implemented-in::python, interface::3d, interface::x11, role::program, scope::utility, uitoolkit::tk, use::learning, use::viewing, works-with::image, x11::application Section: science Priority: optional Filename: pool/main/p/pymol/pymol_1.7.2.1-1_amd64.deb Size: 4867484 MD5sum: 8d943945ec6d3db06e3263f00a562aa6 SHA1: 564aada467983a37c57924893e588a28e9790bb3 SHA256: dee8d9e16f98ed7f1a4861d5024af2c8bf98324d5dddc84055d3a77d250d38ef Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt pymol=1.7.2.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt pymol=1.7.2.1-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpqkdc8pvk 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpqkdc8pvk 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpqkdc8pvk/tmp/scripts/ 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpqkdc8pvk/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', 'update'] 0m3.6s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', 'update'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.0s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.0s INFO: Running scripts post_setup 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_dummy_users'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_dummy_users'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m5.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (3787 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_minimize'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_minimize'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat 0m5.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m5.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m5.7s INFO: Running scripts is_testable 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/is_testable_uninstallable'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/is_testable_uninstallable'] 0m5.7s INFO: Running scripts pre_test 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_test_root_password'] 0m5.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_test_root_password'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'show', '--no-all-versions', 'pymol'] 0m5.8s DUMP: Package: pymol Version: 1.7.2.1-1 Installed-Size: 17747 Maintainer: Debichem Team Architecture: amd64 Depends: python-numpy (>= 1:1.8.0), python-pmw, python-tk, python-numpy-abi9, python (>= 2.7), python (<< 2.8), python2.7:any, freeglut3, libc6 (>= 2.15), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglew1.10 (>= 1.10.0), libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.9) Recommends: apbs Description-en: Molecular Graphics System PyMOL is a molecular graphics system targeted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. . Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface . File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps. Description-md5: bfc8e8676a87c0058529a662aef95313 Homepage: http://www.pymol.org Python-Version: 2.7 Tag: field::biology:structural, field::chemistry, implemented-in::python, interface::3d, interface::x11, role::program, scope::utility, uitoolkit::tk, use::learning, use::viewing, works-with::image, x11::application Section: science Priority: optional Filename: pool/main/p/pymol/pymol_1.7.2.1-1_amd64.deb Size: 4867484 MD5sum: 8d943945ec6d3db06e3263f00a562aa6 SHA1: 564aada467983a37c57924893e588a28e9790bb3 SHA256: dee8d9e16f98ed7f1a4861d5024af2c8bf98324d5dddc84055d3a77d250d38ef 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'show', '--no-all-versions', 'pymol'] 0m5.8s INFO: apt-cache knows about the following packages: pymol 0m5.8s INFO: Running scripts pre_install 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_extras'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_extras'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy'] 0m5.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy', 'pymol'] 0m5.9s DUMP: pymol: Installed: (none) Candidate: 1.7.2.1-1 Version table: 1.7.2.1-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy', 'pymol'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-y', 'install', 'pymol'] 0m12.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: blt fontconfig-config fonts-dejavu-core freeglut3 libblas-common libblas3 libdrm2 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libgl1-mesa-glx libglapi-mesa libglew1.10 libglu1-mesa libice6 liblapack3 libpng12-0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libsm6 libsqlite3-0 libssl1.0.0 libtcl8.6 libtk8.6 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxmu6 libxrender1 libxshmfence1 libxss1 libxt6 libxxf86vm1 mime-support python python-minimal python-numpy python-pmw python-tk python2.7 python2.7-minimal tk8.6-blt2.5 x11-common Suggested packages: blt-demo glew-utils tcl8.6 tk8.6 python-doc gcc gfortran python-dev python-nose python-numpy-dbg python-numpy-doc python-pmw-doc tix python-tk-dbg python2.7-doc binutils binfmt-support Recommended packages: libgl1-mesa-dri file apbs The following NEW packages will be installed: blt fontconfig-config fonts-dejavu-core freeglut3 libblas-common libblas3 libdrm2 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libgl1-mesa-glx libglapi-mesa libglew1.10 libglu1-mesa libice6 liblapack3 libpng12-0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libsm6 libsqlite3-0 libssl1.0.0 libtcl8.6 libtk8.6 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxmu6 libxrender1 libxshmfence1 libxss1 libxt6 libxxf86vm1 mime-support pymol python python-minimal python-numpy python-pmw python-tk python2.7 python2.7-minimal tk8.6-blt2.5 x11-common 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. 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[58.6 kB] Get:46 http://deb.debian.org/debian/ jessie/main libglew1.10 amd64 1.10.0-3 [139 kB] Get:47 http://deb.debian.org/debian/ jessie/main libglu1-mesa amd64 9.0.0-2 [163 kB] Get:48 http://deb.debian.org/debian/ jessie/main libtcl8.6 amd64 8.6.2+dfsg-2 [978 kB] Get:49 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:50 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:51 http://deb.debian.org/debian/ jessie/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:52 http://deb.debian.org/debian/ jessie/main libtk8.6 amd64 8.6.2-1 [771 kB] Get:53 http://deb.debian.org/debian/ jessie/main tk8.6-blt2.5 amd64 2.5.3+dfsg-1 [586 kB] Get:54 http://deb.debian.org/debian/ jessie/main blt amd64 2.5.3+dfsg-1 [14.3 kB] Get:55 http://deb.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:56 http://deb.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:57 http://deb.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:58 http://deb.debian.org/debian/ jessie/main python-numpy amd64 1:1.8.2-2 [1630 kB] Get:59 http://deb.debian.org/debian/ jessie/main python-tk amd64 2.7.8-2+b1 [26.7 kB] Get:60 http://deb.debian.org/debian/ jessie/main python-pmw all 1.3.2-6 [120 kB] Get:61 http://deb.debian.org/debian/ jessie/main pymol amd64 1.7.2.1-1 [4867 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.2 MB in 0s (25.8 MB/s) Selecting previously unselected package libssl1.0.0:amd64. 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Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.4-1+b1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.4-1+b1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../libxmu6_2%3a1.1.2-1_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-1) ... Selecting previously unselected package libglew1.10:amd64. Preparing to unpack .../libglew1.10_1.10.0-3_amd64.deb ... Unpacking libglew1.10:amd64 (1.10.0-3) ... Selecting previously unselected package libglu1-mesa:amd64. Preparing to unpack .../libglu1-mesa_9.0.0-2_amd64.deb ... Unpacking libglu1-mesa:amd64 (9.0.0-2) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../libtcl8.6_8.6.2+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.2+dfsg-2) ... Selecting previously unselected package libxrender1:amd64. 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Unpacking libblas-common (1.2.20110419-10) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-10_amd64.deb ... Unpacking libblas3 (1.2.20110419-10) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-4_amd64.deb ... Unpacking liblapack3 (3.5.0-4) ... Selecting previously unselected package python-numpy. Preparing to unpack .../python-numpy_1%3a1.8.2-2_amd64.deb ... Unpacking python-numpy (1:1.8.2-2) ... Selecting previously unselected package python-tk. Preparing to unpack .../python-tk_2.7.8-2+b1_amd64.deb ... Unpacking python-tk (2.7.8-2+b1) ... Selecting previously unselected package python-pmw. Preparing to unpack .../python-pmw_1.3.2-6_all.deb ... Unpacking python-pmw (1.3.2-6) ... Selecting previously unselected package pymol. Preparing to unpack .../pymol_1.7.2.1-1_amd64.deb ... Unpacking pymol (1.7.2.1-1) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up mime-support (3.58) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libdrm2:amd64 (2.4.58-2) ... Setting up libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-dri2-0:amd64 (1.10-3+b1) ... Setting up libxcb-dri3-0:amd64 (1.10-3+b1) ... Setting up libxcb-glx0:amd64 (1.10-3+b1) ... Setting up libxcb-present0:amd64 (1.10-3+b1) ... Setting up libxcb-sync1:amd64 (1.10-3+b1) ... Setting up libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxshmfence1:amd64 (1.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Setting up libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Setting up libxi6:amd64 (2:1.7.4-1+deb8u1) ... Setting up freeglut3:amd64 (2.8.1-2) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libglew1.10:amd64 (1.10.0-3) ... Setting up libglu1-mesa:amd64 (9.0.0-2) ... Setting up libtcl8.6:amd64 (8.6.2+dfsg-2) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.6:amd64 (8.6.2-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-1) ... Setting up blt (2.5.3+dfsg-1) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up python-numpy (1:1.8.2-2) ... Setting up python-tk (2.7.8-2+b1) ... Setting up python-pmw (1.3.2-6) ... Setting up pymol (1.7.2.1-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-y', 'install', 'pymol'] 0m12.7s INFO: Running scripts post_install 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_install_exceptions'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_install_exceptions'] 0m12.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m13.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m13.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpqkdc8pvk to jessie-lts 0m13.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main deb http://security.debian.org jessie/updates main 0m13.2s INFO: Running scripts pre_distupgrade 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', 'update'] 0m14.9s DUMP: Get:1 http://security.debian.org jessie/updates InRelease [44.9 kB] Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Get:2 http://security.debian.org jessie/updates/main amd64 Packages [781 kB] Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Get:3 http://security.debian.org jessie/updates/main Translation-en [401 kB] Fetched 1227 kB in 0s (1599 kB/s) Reading package lists... 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', 'update'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-yf', 'dist-upgrade'] 0m20.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libbsd0 The following packages will be upgraded: apt bash e2fslibs e2fsprogs gcc-4.9-base libapt-pkg4.12 libbz2-1.0 libcomerr2 libexpat1 libfreetype6 libgcc1 libgcrypt20 libgfortran3 libgl1-mesa-glx libglapi-mesa libice6 libpython2.7-minimal libpython2.7-stdlib libquadmath0 libsqlite3-0 libss2 libssl1.0.0 libstdc++6 libsystemd0 libudev1 libx11-6 libx11-data libx11-xcb1 libxdmcp6 perl-base python2.7 python2.7-minimal systemd systemd-sysv tar tzdata udev zlib1g 38 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After this operation, 4179 kB of additional disk space will be used. Get:1 http://security.debian.org/ jessie/updates/main bash amd64 4.3-11+deb8u2 [1173 kB] Get:2 http://security.debian.org/ jessie/updates/main e2fslibs amd64 1.42.12-2+deb8u2 [186 kB] Get:3 http://security.debian.org/ jessie/updates/main e2fsprogs amd64 1.42.12-2+deb8u2 [751 kB] Get:4 http://security.debian.org/ jessie/updates/main perl-base amd64 5.20.2-3+deb8u12 [1231 kB] Get:5 http://security.debian.org/ jessie/updates/main tar amd64 1.27.1-2+deb8u2 [676 kB] Get:6 http://security.debian.org/ jessie/updates/main libbz2-1.0 amd64 1.0.6-7+deb8u2 [43.3 kB] Get:7 http://security.debian.org/ jessie/updates/main libquadmath0 amd64 4.9.2-10+deb8u2 [129 kB] Get:8 http://security.debian.org/ jessie/updates/main libgfortran3 amd64 4.9.2-10+deb8u2 [254 kB] Get:9 http://security.debian.org/ jessie/updates/main gcc-4.9-base amd64 4.9.2-10+deb8u2 [160 kB] Get:10 http://security.debian.org/ jessie/updates/main libgcc1 amd64 1:4.9.2-10+deb8u2 [39.4 kB] Get:11 http://security.debian.org/ jessie/updates/main libstdc++6 amd64 4.9.2-10+deb8u2 [273 kB] Get:12 http://security.debian.org/ jessie/updates/main zlib1g amd64 1:1.2.8.dfsg-2+deb8u1 [88.3 kB] Get:13 http://security.debian.org/ jessie/updates/main libapt-pkg4.12 amd64 1.0.9.8.6 [794 kB] Get:14 http://security.debian.org/ jessie/updates/main apt amd64 1.0.9.8.6 [1109 kB] Get:15 http://security.debian.org/ jessie/updates/main libudev1 amd64 215-17+deb8u13 [58.8 kB] Get:16 http://security.debian.org/ jessie/updates/main udev amd64 215-17+deb8u13 [878 kB] Get:17 http://security.debian.org/ jessie/updates/main libcomerr2 amd64 1.42.12-2+deb8u2 [60.6 kB] Get:18 http://security.debian.org/ jessie/updates/main libss2 amd64 1.42.12-2+deb8u2 [64.9 kB] Get:19 http://security.debian.org/ jessie/updates/main libgcrypt20 amd64 1.6.3-2+deb8u8 [394 kB] Get:20 http://security.debian.org/ jessie/updates/main libsystemd0 amd64 215-17+deb8u13 [90.5 kB] Get:21 http://security.debian.org/ jessie/updates/main systemd amd64 215-17+deb8u13 [2555 kB] Get:22 http://security.debian.org/ jessie/updates/main systemd-sysv amd64 215-17+deb8u13 [37.5 kB] Get:23 http://security.debian.org/ jessie/updates/main libssl1.0.0 amd64 1.0.1t-1+deb8u12 [1049 kB] Get:24 http://security.debian.org/ jessie/updates/main libsqlite3-0 amd64 3.8.7.1-1+deb8u6 [439 kB] Get:25 http://security.debian.org/ jessie/updates/main libbsd0 amd64 0.7.0-2+deb8u1 [68.2 kB] Get:26 http://security.debian.org/ jessie/updates/main libexpat1 amd64 2.1.0-6+deb8u6 [80.3 kB] Get:27 http://security.debian.org/ jessie/updates/main libfreetype6 amd64 2.5.2-3+deb8u4 [467 kB] Get:28 http://security.debian.org/ jessie/updates/main libgl1-mesa-glx amd64 10.3.2-1+deb8u2 [181 kB] Get:29 http://security.debian.org/ jessie/updates/main libglapi-mesa amd64 10.3.2-1+deb8u2 [53.9 kB] Get:30 http://security.debian.org/ jessie/updates/main libx11-data all 2:1.6.2-3+deb8u2 [126 kB] Get:31 http://security.debian.org/ jessie/updates/main libx11-6 amd64 2:1.6.2-3+deb8u2 [729 kB] Get:32 http://security.debian.org/ jessie/updates/main libx11-xcb1 amd64 2:1.6.2-3+deb8u2 [163 kB] Get:33 http://security.debian.org/ jessie/updates/main libice6 amd64 2:1.0.9-1+deb8u1 [58.8 kB] Get:34 http://security.debian.org/ jessie/updates/main libxdmcp6 amd64 1:1.1.1-1+deb8u1 [24.7 kB] Get:35 http://security.debian.org/ jessie/updates/main python2.7 amd64 2.7.9-2+deb8u5 [252 kB] Get:36 http://security.debian.org/ jessie/updates/main python2.7-minimal amd64 2.7.9-2+deb8u5 [1404 kB] Get:37 http://security.debian.org/ jessie/updates/main libpython2.7-stdlib amd64 2.7.9-2+deb8u5 [1850 kB] Get:38 http://security.debian.org/ jessie/updates/main libpython2.7-minimal amd64 2.7.9-2+deb8u5 [379 kB] Get:39 http://security.debian.org/ jessie/updates/main tzdata all 2019c-0+deb8u1 [234 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.6 MB in 0s (37.5 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10453 files and directories currently installed.) Preparing to unpack .../udev_215-17+deb8u13_amd64.deb ... Unpacking udev (215-17+deb8u13) over (215-17+deb8u7) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up udev (215-17+deb8u13) ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. A chroot environment has been detected, udev not started. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10453 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libcomerr2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10451 files and directories currently installed.) Preparing to unpack .../libsystemd0_215-17+deb8u13_amd64.deb ... Unpacking libsystemd0:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libsystemd0:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10451 files and directories currently installed.) Preparing to unpack .../systemd_215-17+deb8u13_amd64.deb ... Unpacking systemd (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd (215-17+deb8u13) ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10451 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u13_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd-sysv (215-17+deb8u13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10451 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u12_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u12) over (1.0.1t-1+deb8u8) ... Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u6_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) over (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../libbsd0_0.7.0-2+deb8u1_amd64.deb ... 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Unpacking libx11-xcb1:amd64 (2:1.6.2-3+deb8u2) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libice6_2%3a1.0.9-1+deb8u1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+deb8u1) over (2:1.0.9-1+b1) ... Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+deb8u1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+deb8u1) over (1:1.1.1-1+b1) ... Preparing to unpack .../python2.7_2.7.9-2+deb8u5_amd64.deb ... Unpacking python2.7 (2.7.9-2+deb8u5) over (2.7.9-2+deb8u1) ... Preparing to unpack .../python2.7-minimal_2.7.9-2+deb8u5_amd64.deb ... Unpacking python2.7-minimal (2.7.9-2+deb8u5) over (2.7.9-2+deb8u1) ... Preparing to unpack .../libpython2.7-stdlib_2.7.9-2+deb8u5_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.9-2+deb8u5) over (2.7.9-2+deb8u1) ... Preparing to unpack .../libpython2.7-minimal_2.7.9-2+deb8u5_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.9-2+deb8u5) over (2.7.9-2+deb8u1) ... Preparing to unpack .../tzdata_2019c-0+deb8u1_all.deb ... Unpacking tzdata (2019c-0+deb8u1) over (2018e-0+deb8u1) ... Processing triggers for mime-support (3.58) ... Setting up tzdata (2019c-0+deb8u1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 16 08:19:55 UTC 2022. Universal Time is now: Fri Sep 16 08:19:55 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libquadmath0:amd64 (4.9.2-10+deb8u2) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u2) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Setting up libbsd0:amd64 (0.7.0-2+deb8u1) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u6) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u4) ... Setting up libglapi-mesa:amd64 (10.3.2-1+deb8u2) ... Setting up libx11-data (2:1.6.2-3+deb8u2) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Setting up libx11-xcb1:amd64 (2:1.6.2-3+deb8u2) ... Setting up libgl1-mesa-glx:amd64 (10.3.2-1+deb8u2) ... Setting up libice6:amd64 (2:1.0.9-1+deb8u1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Setting up libpython2.7-minimal:amd64 (2.7.9-2+deb8u5) ... Setting up python2.7-minimal (2.7.9-2+deb8u5) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u5) ... Setting up python2.7 (2.7.9-2+deb8u5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-yf', 'dist-upgrade'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.9s DUMP: ea587cb5da6f95fbc79bf1681671e909 - 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'show', '--no-all-versions', 'pymol'] 0m20.9s DUMP: Package: pymol Version: 1.7.2.1-1 Installed-Size: 17747 Maintainer: Debichem Team Architecture: amd64 Depends: python-numpy (>= 1:1.8.0), python-pmw, python-tk, python-numpy-abi9, python (>= 2.7), python (<< 2.8), python2.7:any, freeglut3, libc6 (>= 2.15), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglew1.10 (>= 1.10.0), libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.9) Recommends: apbs Description-en: Molecular Graphics System PyMOL is a molecular graphics system targeted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. . Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface . File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps. Description-md5: bfc8e8676a87c0058529a662aef95313 Homepage: http://www.pymol.org Python-Version: 2.7 Tag: field::biology:structural, field::chemistry, implemented-in::python, interface::3d, interface::x11, role::program, scope::utility, uitoolkit::tk, use::learning, use::viewing, works-with::image, x11::application Section: science Priority: optional Filename: pool/main/p/pymol/pymol_1.7.2.1-1_amd64.deb Size: 4867484 MD5sum: 8d943945ec6d3db06e3263f00a562aa6 SHA1: 564aada467983a37c57924893e588a28e9790bb3 SHA256: dee8d9e16f98ed7f1a4861d5024af2c8bf98324d5dddc84055d3a77d250d38ef 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'show', '--no-all-versions', 'pymol'] 0m20.9s INFO: apt-cache knows about the following packages: pymol 0m20.9s INFO: Running scripts pre_install 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_database-server'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_database-server'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_exceptions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_extras'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_extras'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy'] 0m21.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy', 'pymol'] 0m21.1s DUMP: pymol: Installed: 1.7.2.1-1 Candidate: 1.7.2.1-1 Version table: *** 1.7.2.1-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy', 'pymol'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-y', 'install', 'pymol'] 0m21.2s DUMP: Reading package lists... Building dependency tree... Reading state information... pymol is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-y', 'install', 'pymol'] 0m21.2s INFO: Running scripts post_install 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_install_exceptions'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_install_exceptions'] 0m21.3s INFO: Running scripts post_distupgrade 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_zz_backports'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_distupgrade_zz_backports'] 0m21.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m21.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m21.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m22.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m22.2s INFO: Running scripts pre_install 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_database-server'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_database-server'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_exceptions'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_extras'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_extras'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy'] 0m22.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy', 'pymol'] 0m22.3s DUMP: pymol: Installed: 1.7.2.1-1 Candidate: 1.7.2.1-1 Version table: *** 1.7.2.1-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-cache', 'policy', 'pymol'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-y', 'install', 'pymol=1.7.2.1-1'] 0m22.5s DUMP: Reading package lists... Building dependency tree... Reading state information... pymol is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', '-y', 'install', 'pymol=1.7.2.1-1'] 0m22.5s INFO: Running scripts post_install 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_install_exceptions'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_install_exceptions'] 0m22.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m23.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m23.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', '-ac', '--ignore-obsolete'] 0m24.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', '-ac', '--ignore-obsolete'] 0m24.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.2s DUMP: 0.15.6 0m24.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.2s INFO: Running adequate version 0.15.6 now. 0m24.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'pymol'] 0m24.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'pymol'] 0m24.3s INFO: Running scripts pre_remove 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_exceptions'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/pre_remove_exceptions'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.8s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.6 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u2 install ok installed blt blt 2.5.3+dfsg-1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+deb8u2 install ok installed e2fsprogs e2fsprogs 1.42.12-2+deb8u2 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed freeglut3:amd64 freeglut3 2.8.1-2 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u2 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.6 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblas-common libblas-common 1.2.20110419-10 install ok installed libblas3 libblas3 1.2.20110419-10 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd0:amd64 libbsd0 0.7.0-2+deb8u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+deb8u2 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+deb8u2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdrm2:amd64 libdrm2 2.4.58-2 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u6 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u4 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u2 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u8 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u2 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 10.3.2-1+deb8u2 install ok installed libglapi-mesa:amd64 libglapi-mesa 10.3.2-1+deb8u2 install ok installed libglew1.10:amd64 libglew1.10 1.10.0-3 install ok installed libglu1-mesa:amd64 libglu1-mesa 9.0.0-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libice6:amd64 libice6 2:1.0.9-1+deb8u1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblapack3 liblapack3 3.5.0-4 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u5 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u5 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u2 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u6 install ok installed libss2:amd64 libss2 1.42.12-2+deb8u2 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u12 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u13 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.2+dfsg-2 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtk8.6:amd64 libtk8.6 8.6.2-1 install ok installed libudev1:amd64 libudev1 215-17+deb8u13 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u2 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.2-3+deb8u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.10-3+b1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.10-3+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.10-3+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.10-3+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+deb8u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.1-2+deb8u1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxi6:amd64 libxi6 2:1.7.4-1+deb8u1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxshmfence1:amd64 libxshmfence1 1.1-4 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.3-1+b1 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u12 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed pymol pymol 1.7.2.1-1 install ok installed python python 2.7.9-1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python-numpy python-numpy 1:1.8.2-2 install ok installed python-pmw python-pmw 1.3.2-6 install ok installed python-tk python-tk 2.7.8-2+b1 install ok installed python2.7 python2.7 2.7.9-2+deb8u5 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u5 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u13 install ok installed systemd-sysv systemd-sysv 215-17+deb8u13 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u2 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-1 install ok installed tzdata tzdata 2019c-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u13 install ok installed util-linux util-linux 2.25.2-6 install ok installed x11-common x11-common 1:7.7+7 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+deb8u1 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', 'remove', 'blt', 'fontconfig-config', 'fonts-dejavu-core', 'freeglut3:amd64', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libdrm2:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglew1.10:amd64', 'libglu1-mesa:amd64', 'libice6:amd64', 'liblapack3', 'libpng12-0:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libtcl8.6:amd64', 'libtk8.6:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxmu6:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'mime-support', 'python', 'python-minimal', 'python-numpy', 'python-pmw', 'python-tk', 'python2.7', 'python2.7-minimal', 'tk8.6-blt2.5', 'x11-common', 'pymol'] 0m27.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blt fontconfig-config fonts-dejavu-core freeglut3 libblas-common libblas3 libbsd0 libdrm2 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libgl1-mesa-glx libglapi-mesa libglew1.10 libglu1-mesa libice6 liblapack3 libpng12-0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libsm6 libsqlite3-0 libssl1.0.0 libtcl8.6 libtk8.6 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxmu6 libxrender1 libxshmfence1 libxss1 libxt6 libxxf86vm1 mime-support pymol python python-minimal python-numpy python-pmw python-tk python2.7 python2.7-minimal tk8.6-blt2.5 x11-common 0 upgraded, 0 newly installed, 62 to remove and 0 not upgraded. After this operation, 79.4 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10458 files and directories currently installed.) Removing pymol (1.7.2.1-1) ... Removing python-pmw (1.3.2-6) ... Removing python-tk (2.7.8-2+b1) ... Removing blt (2.5.3+dfsg-1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-1) ... Removing libtk8.6:amd64 (8.6.2-1) ... Removing libxft2:amd64 (2.3.2-1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Removing freeglut3:amd64 (2.8.1-2) ... Removing python-numpy (1:1.8.2-2) ... Removing liblapack3 (3.5.0-4) ... Removing libblas3 (1.2.20110419-10) ... Removing libblas-common (1.2.20110419-10) ... Removing libglew1.10:amd64 (1.10.0-3) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libice6:amd64 (2:1.0.9-1+deb8u1) ... Removing libbsd0:amd64 (0.7.0-2+deb8u1) ... Removing libglu1-mesa:amd64 (9.0.0-2) ... Removing libgl1-mesa-glx:amd64 (10.3.2-1+deb8u2) ... Removing libdrm2:amd64 (2.4.58-2) ... Removing python (2.7.9-1) ... Removing python2.7 (2.7.9-2+deb8u5) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u5) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libglapi-mesa:amd64 (10.3.2-1+deb8u2) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u5) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u5) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing libtcl8.6:amd64 (8.6.2+dfsg-2) ... Removing libx11-xcb1:amd64 (2:1.6.2-3+deb8u2) ... Removing libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Removing libxcb-sync1:amd64 (1.10-3+b1) ... Removing libxcb-present0:amd64 (1.10-3+b1) ... Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Removing libxcb-dri3-0:amd64 (1.10-3+b1) ... Removing libxcb-glx0:amd64 (1.10-3+b1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxshmfence1:amd64 (1.1-4) ... Removing mime-support (3.58) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing libxext6:amd64 (2:1.3.3-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Removing libx11-data (2:1.6.2-3+deb8u2) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', 'remove', 'blt', 'fontconfig-config', 'fonts-dejavu-core', 'freeglut3:amd64', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libdrm2:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglew1.10:amd64', 'libglu1-mesa:amd64', 'libice6:amd64', 'liblapack3', 'libpng12-0:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libtcl8.6:amd64', 'libtk8.6:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxmu6:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'mime-support', 'python', 'python-minimal', 'python-numpy', 'python-pmw', 'python-tk', 'python2.7', 'python2.7-minimal', 'tk8.6-blt2.5', 'x11-common', 'pymol'] 0m27.3s INFO: Running scripts post_remove 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_remove_exceptions'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_remove_exceptions'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg', '--purge', 'blt', 'fontconfig-config', 'fonts-dejavu-core', 'freeglut3:amd64', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libdrm2:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglew1.10:amd64', 'libglu1-mesa:amd64', 'libice6:amd64', 'liblapack3', 'libpng12-0:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libtcl8.6:amd64', 'libtk8.6:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxmu6:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'mime-support', 'python', 'python-minimal', 'python-numpy', 'python-pmw', 'python-tk', 'python2.7', 'python2.7-minimal', 'tk8.6-blt2.5', 'x11-common'] 0m28.0s DUMP: dpkg: warning: ignoring request to remove blt which isn't installed (Reading database ... 7511 files and directories currently installed.) Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... Removing freeglut3:amd64 (2.8.1-2) ... Purging configuration files for freeglut3:amd64 (2.8.1-2) ... dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed Removing libbsd0:amd64 (0.7.0-2+deb8u1) ... Purging configuration files for libbsd0:amd64 (0.7.0-2+deb8u1) ... Removing libdrm2:amd64 (2.4.58-2) ... Purging configuration files for libdrm2:amd64 (2.4.58-2) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libgl1-mesa-glx:amd64 (10.3.2-1+deb8u2) ... Purging configuration files for libgl1-mesa-glx:amd64 (10.3.2-1+deb8u2) ... Removing libglapi-mesa:amd64 (10.3.2-1+deb8u2) ... Purging configuration files for libglapi-mesa:amd64 (10.3.2-1+deb8u2) ... Removing libglew1.10:amd64 (1.10.0-3) ... Purging configuration files for libglew1.10:amd64 (1.10.0-3) ... Removing libglu1-mesa:amd64 (9.0.0-2) ... Purging configuration files for libglu1-mesa:amd64 (9.0.0-2) ... Removing libice6:amd64 (2:1.0.9-1+deb8u1) ... Purging configuration files for libice6:amd64 (2:1.0.9-1+deb8u1) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u5) ... Purging configuration files for libpython2.7-minimal:amd64 (2.7.9-2+deb8u5) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Purging configuration files for libsm6:amd64 (2:1.2.2-1+b1) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing libtcl8.6:amd64 (8.6.2+dfsg-2) ... Purging configuration files for libtcl8.6:amd64 (8.6.2+dfsg-2) ... Removing libtk8.6:amd64 (8.6.2-1) ... Purging configuration files for libtk8.6:amd64 (8.6.2-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libx11-xcb1:amd64 (2:1.6.2-3+deb8u2) ... Purging configuration files for libx11-xcb1:amd64 (2:1.6.2-3+deb8u2) ... Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-dri2-0:amd64 (1.10-3+b1) ... Removing libxcb-dri3-0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-dri3-0:amd64 (1.10-3+b1) ... Removing libxcb-glx0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-glx0:amd64 (1.10-3+b1) ... Removing libxcb-present0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-present0:amd64 (1.10-3+b1) ... Removing libxcb-sync1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-sync1:amd64 (1.10-3+b1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b1) ... Purging configuration files for libxdamage1:amd64 (1:1.1.4-2+b1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Purging configuration files for libxext6:amd64 (2:1.3.3-1) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Purging configuration files for libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libxft2:amd64 (2.3.2-1) ... Purging configuration files for libxft2:amd64 (2.3.2-1) ... Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Purging configuration files for libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Purging configuration files for libxmu6:amd64 (2:1.1.2-1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxshmfence1:amd64 (1.1-4) ... Purging configuration files for libxshmfence1:amd64 (1.1-4) ... Removing libxss1:amd64 (1:1.2.2-1) ... Purging configuration files for libxss1:amd64 (1:1.2.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Purging configuration files for libxt6:amd64 (1:1.1.4-1+b1) ... Removing libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Purging configuration files for libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... Removing python (2.7.9-1) ... Purging configuration files for python (2.7.9-1) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-numpy which isn't installed dpkg: warning: ignoring request to remove python-pmw which isn't installed dpkg: warning: ignoring request to remove python-tk which isn't installed Removing python2.7 (2.7.9-2+deb8u5) ... Purging configuration files for python2.7 (2.7.9-2+deb8u5) ... Removing python2.7-minimal (2.7.9-2+deb8u5) ... Purging configuration files for python2.7-minimal (2.7.9-2+deb8u5) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-1) ... Purging configuration files for tk8.6-blt2.5 (2.5.3+dfsg-1) ... Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg', '--purge', 'blt', 'fontconfig-config', 'fonts-dejavu-core', 'freeglut3:amd64', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libdrm2:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglew1.10:amd64', 'libglu1-mesa:amd64', 'libice6:amd64', 'liblapack3', 'libpng12-0:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'libtcl8.6:amd64', 'libtk8.6:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxmu6:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'mime-support', 'python', 'python-minimal', 'python-numpy', 'python-pmw', 'python-tk', 'python2.7', 'python2.7-minimal', 'tk8.6-blt2.5', 'x11-common'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg', '--purge', 'pymol'] 0m28.0s DUMP: (Reading database ... 7472 files and directories currently installed.) Removing pymol (1.7.2.1-1) ... Purging configuration files for pymol (1.7.2.1-1) ... 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg', '--purge', 'pymol'] 0m28.0s INFO: Running scripts post_purge 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_purge_exceptions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_purge_exceptions'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg', '--purge', '--pending'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg', '--purge', '--pending'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg', '--remove', '--pending'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg', '--remove', '--pending'] 0m28.0s INFO: Running scripts post_test 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_test_exceptions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'tmp/scripts/post_test_exceptions'] 0m28.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m28.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg-divert', '--list'] 0m28.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'dpkg-divert', '--list'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', 'clean'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk', 'apt-get', 'clean'] 0m28.4s DEBUG: Recording chroot state 0m29.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/shm'] 0m29.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/shm'] 0m29.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/console'] 0m29.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/console'] 0m29.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/ptmx'] 0m29.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/ptmx'] 0m29.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/pts'] 0m29.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/dev/pts'] 0m29.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/proc'] 0m29.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk/proc'] 0m29.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m29.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqkdc8pvk'] 0m29.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpqkdc8pvk 0m29.4s INFO: PASS: Upgrading between Debian distributions. 0m29.4s INFO: PASS: All tests. 0m29.4s INFO: piuparts run ends. ret=0 End: 2022-09-16 08:20:05 GMT