Start: 2022-09-12 04:57:51 GMT [jessie] Package: python3-biopython-sql Source: python-biopython Version: 1.64+dfsg-5 Installed-Size: 147 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any (>= 3.3.2-2~), python3-biopython Description: Biopython support for the BioSQL database schema (Python 3) Homepage: http://biopython.org Description-md5: 425dee256ecc52323e188045e122383a Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython-sql_1.64+dfsg-5_all.deb Size: 27784 MD5sum: fc97670db0380c035967080d623e6e04 SHA1: 60c1e031c78f480a9398bd4364715724e1b08ec2 SHA256: 3134cd8151240adcb277b3257ea4620ddddbeab3290426978b32b1be1c2e1861 [jessie-lts] Package: python3-biopython-sql Source: python-biopython Version: 1.64+dfsg-5 Installed-Size: 147 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any (>= 3.3.2-2~), python3-biopython Description: Biopython support for the BioSQL database schema (Python 3) Homepage: http://biopython.org Description-md5: 425dee256ecc52323e188045e122383a Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython-sql_1.64+dfsg-5_all.deb Size: 27784 MD5sum: fc97670db0380c035967080d623e6e04 SHA1: 60c1e031c78f480a9398bd4364715724e1b08ec2 SHA256: 3134cd8151240adcb277b3257ea4620ddddbeab3290426978b32b1be1c2e1861 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt python3-biopython-sql=1.64+dfsg-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt python3-biopython-sql=1.64+dfsg-5 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_ln_j_7z 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_ln_j_7z 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_ln_j_7z/tmp/scripts/ 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmp_ln_j_7z/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', 'update'] 0m3.0s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.7s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (3753 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_minimize'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_minimize'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_zz_backports'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_setup_zz_backports'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat 0m4.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m5.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m5.3s INFO: Running scripts is_testable 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/is_testable_uninstallable'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/is_testable_uninstallable'] 0m5.3s INFO: Running scripts pre_test 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_test_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_test_exceptions'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_test_root_password'] 0m5.3s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_test_root_password'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython-sql'] 0m5.3s DUMP: Package: python3-biopython-sql Source: python-biopython Version: 1.64+dfsg-5 Installed-Size: 147 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any (>= 3.3.2-2~), python3-biopython Description-en: Biopython support for the BioSQL database schema (Python 3) This is the Biopython interface to a BioSQL database (see www.biosql.org for details). BioPerl, BioJava and BioRuby also provide their own BioSQL interfaces onto the same shared SQL schema. . This package is targeting Python version 3. Description-md5: 425dee256ecc52323e188045e122383a Homepage: http://biopython.org Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython-sql_1.64+dfsg-5_all.deb Size: 27784 MD5sum: fc97670db0380c035967080d623e6e04 SHA1: 60c1e031c78f480a9398bd4364715724e1b08ec2 SHA256: 3134cd8151240adcb277b3257ea4620ddddbeab3290426978b32b1be1c2e1861 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython-sql'] 0m5.3s INFO: apt-cache knows about the following packages: python3-biopython-sql 0m5.3s INFO: Running scripts pre_install 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_extras'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_extras'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy'] 0m5.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy', 'python3-biopython-sql'] 0m5.4s DUMP: python3-biopython-sql: Installed: (none) Candidate: 1.64+dfsg-5 Version table: 1.64+dfsg-5 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy', 'python3-biopython-sql'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-y', 'install', 'python3-biopython-sql'] 0m12.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: dh-python libblas-common libblas3 libexpat1 libffi6 libgfortran3 liblapack3 libmpdec2 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libquadmath0 libsqlite3-0 libssl1.0.0 mime-support python3 python3-biopython python3-minimal python3-numpy python3-reportlab python3-reportlab-accel python3.4 python3.4-minimal Suggested packages: python3-doc python3-tk python3-venv python-reportlab bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phyml prank probcons python-mysqldb python3-matplotlib python3-pil python3-rdflib python3-renderpm python3-psycopg2 raxml samtools t-coffee wise gcc gfortran python-numpy-doc python3-dev python3-nose python3-numpy-dbg pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3.4-venv python3.4-doc binutils binfmt-support Recommended packages: file python-biopython-doc ncbi-blast+ The following NEW packages will be installed: dh-python libblas-common libblas3 libexpat1 libffi6 libgfortran3 liblapack3 libmpdec2 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libquadmath0 libsqlite3-0 libssl1.0.0 mime-support python3 python3-biopython python3-biopython-sql python3-minimal python3-numpy python3-reportlab python3-reportlab-accel python3.4 python3.4-minimal 0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded. Need to get 11.9 MB of archives. After this operation, 50.6 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:2 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:3 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:4 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:5 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:6 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:7 http://deb.debian.org/debian/ jessie/main libmpdec2 amd64 2.4.1-1 [85.7 kB] Get:8 http://deb.debian.org/debian/ jessie/main libpython3.4-minimal amd64 3.4.2-1 [492 kB] Get:9 http://deb.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:10 http://deb.debian.org/debian/ jessie/main libpython3.4-stdlib amd64 3.4.2-1 [2088 kB] Get:11 http://deb.debian.org/debian/ jessie/main python3.4-minimal amd64 3.4.2-1 [1646 kB] Get:12 http://deb.debian.org/debian/ jessie/main python3.4 amd64 3.4.2-1 [204 kB] Get:13 http://deb.debian.org/debian/ jessie/main python3-minimal amd64 3.4.2-2 [34.7 kB] Get:14 http://deb.debian.org/debian/ jessie/main libpython3-stdlib amd64 3.4.2-2 [18.1 kB] Get:15 http://deb.debian.org/debian/ jessie/main python3 amd64 3.4.2-2 [21.2 kB] Get:16 http://deb.debian.org/debian/ jessie/main dh-python all 1.20141111-2 [66.4 kB] Get:17 http://deb.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:18 http://deb.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:19 http://deb.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:20 http://deb.debian.org/debian/ jessie/main python3-numpy amd64 1:1.8.2-2 [1628 kB] Get:21 http://deb.debian.org/debian/ jessie/main python3-reportlab-accel amd64 3.1.8-3+deb8u1 [21.2 kB] Get:22 http://deb.debian.org/debian/ jessie/main python3-reportlab all 3.1.8-3+deb8u1 [450 kB] Get:23 http://deb.debian.org/debian/ jessie/main python3-biopython amd64 1.64+dfsg-5 [1133 kB] Get:24 http://deb.debian.org/debian/ jessie/main python3-biopython-sql all 1.64+dfsg-5 [27.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.9 MB in 0s (17.1 MB/s) Selecting previously unselected package libssl1.0.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+deb8u1_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+deb8u1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_4.9.2-10+deb8u1_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.1-1_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.1-1) ... Selecting previously unselected package libpython3.4-minimal:amd64. Preparing to unpack .../libpython3.4-minimal_3.4.2-1_amd64.deb ... Unpacking libpython3.4-minimal:amd64 (3.4.2-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.58_all.deb ... Unpacking mime-support (3.58) ... Selecting previously unselected package libpython3.4-stdlib:amd64. Preparing to unpack .../libpython3.4-stdlib_3.4.2-1_amd64.deb ... Unpacking libpython3.4-stdlib:amd64 (3.4.2-1) ... Selecting previously unselected package python3.4-minimal. Preparing to unpack .../python3.4-minimal_3.4.2-1_amd64.deb ... Unpacking python3.4-minimal (3.4.2-1) ... Selecting previously unselected package python3.4. Preparing to unpack .../python3.4_3.4.2-1_amd64.deb ... Unpacking python3.4 (3.4.2-1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../python3-minimal_3.4.2-2_amd64.deb ... Unpacking python3-minimal (3.4.2-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.4.2-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.4.2-2) ... Selecting previously unselected package python3. Preparing to unpack .../python3_3.4.2-2_amd64.deb ... Unpacking python3 (3.4.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../dh-python_1.20141111-2_all.deb ... Unpacking dh-python (1.20141111-2) ... Selecting previously unselected package libblas-common. Preparing to unpack .../libblas-common_1.2.20110419-10_amd64.deb ... Unpacking libblas-common (1.2.20110419-10) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-10_amd64.deb ... Unpacking libblas3 (1.2.20110419-10) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-4_amd64.deb ... Unpacking liblapack3 (3.5.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../python3-numpy_1%3a1.8.2-2_amd64.deb ... Unpacking python3-numpy (1:1.8.2-2) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../python3-reportlab-accel_3.1.8-3+deb8u1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.1.8-3+deb8u1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../python3-reportlab_3.1.8-3+deb8u1_all.deb ... Unpacking python3-reportlab (3.1.8-3+deb8u1) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../python3-biopython_1.64+dfsg-5_amd64.deb ... Unpacking python3-biopython (1.64+dfsg-5) ... Selecting previously unselected package python3-biopython-sql. Preparing to unpack .../python3-biopython-sql_1.64+dfsg-5_all.deb ... Unpacking python3-biopython-sql (1.64+dfsg-5) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libmpdec2:amd64 (2.4.1-1) ... Setting up libpython3.4-minimal:amd64 (3.4.2-1) ... Setting up mime-support (3.58) ... Setting up libpython3.4-stdlib:amd64 (3.4.2-1) ... Setting up python3.4-minimal (3.4.2-1) ... Setting up python3.4 (3.4.2-1) ... Setting up python3-minimal (3.4.2-2) ... Setting up libpython3-stdlib:amd64 (3.4.2-2) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up python3 (3.4.2-2) ... Setting up dh-python (1.20141111-2) ... Setting up python3-numpy (1:1.8.2-2) ... Setting up python3-reportlab-accel:amd64 (3.1.8-3+deb8u1) ... Setting up python3-reportlab (3.1.8-3+deb8u1) ... Setting up python3-biopython (1.64+dfsg-5) ... Setting up python3-biopython-sql (1.64+dfsg-5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-y', 'install', 'python3-biopython-sql'] 0m12.4s INFO: Running scripts post_install 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_install_exceptions'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_install_exceptions'] 0m12.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m12.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m12.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp_ln_j_7z to jessie-lts 0m12.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main deb http://security.debian.org jessie/updates main 0m12.9s INFO: Running scripts pre_distupgrade 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', 'update'] 0m14.5s DUMP: Get:1 http://security.debian.org jessie/updates InRelease [44.9 kB] Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Get:2 http://security.debian.org jessie/updates/main amd64 Packages [781 kB] Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Get:3 http://security.debian.org jessie/updates/main Translation-en [401 kB] Fetched 1227 kB in 0s (1627 kB/s) Reading package lists... 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', 'update'] 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-yf', 'dist-upgrade'] 0m21.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt bash e2fslibs e2fsprogs gcc-4.9-base libapt-pkg4.12 libbz2-1.0 libcomerr2 libexpat1 libgcc1 libgcrypt20 libgfortran3 libpython3.4-minimal libpython3.4-stdlib libquadmath0 libsqlite3-0 libss2 libssl1.0.0 libstdc++6 libsystemd0 libudev1 perl-base python3-reportlab python3-reportlab-accel python3.4 python3.4-minimal systemd systemd-sysv tar tzdata udev zlib1g 32 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 17.8 MB of archives. After this operation, 3922 kB of additional disk space will be used. Get:1 http://security.debian.org/ jessie/updates/main bash amd64 4.3-11+deb8u2 [1173 kB] Get:2 http://security.debian.org/ jessie/updates/main e2fslibs amd64 1.42.12-2+deb8u2 [186 kB] Get:3 http://security.debian.org/ jessie/updates/main e2fsprogs amd64 1.42.12-2+deb8u2 [751 kB] Get:4 http://security.debian.org/ jessie/updates/main perl-base amd64 5.20.2-3+deb8u12 [1231 kB] Get:5 http://security.debian.org/ jessie/updates/main tar amd64 1.27.1-2+deb8u2 [676 kB] Get:6 http://security.debian.org/ jessie/updates/main libbz2-1.0 amd64 1.0.6-7+deb8u2 [43.3 kB] Get:7 http://security.debian.org/ jessie/updates/main libquadmath0 amd64 4.9.2-10+deb8u2 [129 kB] Get:8 http://security.debian.org/ jessie/updates/main libgfortran3 amd64 4.9.2-10+deb8u2 [254 kB] Get:9 http://security.debian.org/ jessie/updates/main gcc-4.9-base amd64 4.9.2-10+deb8u2 [160 kB] Get:10 http://security.debian.org/ jessie/updates/main libgcc1 amd64 1:4.9.2-10+deb8u2 [39.4 kB] Get:11 http://security.debian.org/ jessie/updates/main libstdc++6 amd64 4.9.2-10+deb8u2 [273 kB] Get:12 http://security.debian.org/ jessie/updates/main zlib1g amd64 1:1.2.8.dfsg-2+deb8u1 [88.3 kB] Get:13 http://security.debian.org/ jessie/updates/main libapt-pkg4.12 amd64 1.0.9.8.6 [794 kB] Get:14 http://security.debian.org/ jessie/updates/main apt amd64 1.0.9.8.6 [1109 kB] Get:15 http://security.debian.org/ jessie/updates/main libudev1 amd64 215-17+deb8u13 [58.8 kB] Get:16 http://security.debian.org/ jessie/updates/main udev amd64 215-17+deb8u13 [878 kB] Get:17 http://security.debian.org/ jessie/updates/main libcomerr2 amd64 1.42.12-2+deb8u2 [60.6 kB] Get:18 http://security.debian.org/ jessie/updates/main libss2 amd64 1.42.12-2+deb8u2 [64.9 kB] Get:19 http://security.debian.org/ jessie/updates/main libgcrypt20 amd64 1.6.3-2+deb8u8 [394 kB] Get:20 http://security.debian.org/ jessie/updates/main libsystemd0 amd64 215-17+deb8u13 [90.5 kB] Get:21 http://security.debian.org/ jessie/updates/main systemd amd64 215-17+deb8u13 [2555 kB] Get:22 http://security.debian.org/ jessie/updates/main systemd-sysv amd64 215-17+deb8u13 [37.5 kB] Get:23 http://security.debian.org/ jessie/updates/main libssl1.0.0 amd64 1.0.1t-1+deb8u12 [1049 kB] Get:24 http://security.debian.org/ jessie/updates/main libsqlite3-0 amd64 3.8.7.1-1+deb8u6 [439 kB] Get:25 http://security.debian.org/ jessie/updates/main libexpat1 amd64 2.1.0-6+deb8u6 [80.3 kB] Get:26 http://security.debian.org/ jessie/updates/main python3.4 amd64 3.4.2-1+deb8u7 [205 kB] Get:27 http://security.debian.org/ jessie/updates/main libpython3.4-stdlib amd64 3.4.2-1+deb8u7 [2095 kB] Get:28 http://security.debian.org/ jessie/updates/main python3.4-minimal amd64 3.4.2-1+deb8u7 [1646 kB] Get:29 http://security.debian.org/ jessie/updates/main libpython3.4-minimal amd64 3.4.2-1+deb8u7 [495 kB] Get:30 http://security.debian.org/ jessie/updates/main tzdata all 2019c-0+deb8u1 [234 kB] Get:31 http://security.debian.org/ jessie/updates/main python3-reportlab-accel amd64 3.1.8-3+deb8u2 [21.4 kB] Get:32 http://security.debian.org/ jessie/updates/main python3-reportlab all 3.1.8-3+deb8u2 [450 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.8 MB in 0s (41.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9793 files and directories currently installed.) Preparing to unpack .../bash_4.3-11+deb8u2_amd64.deb ... Unpacking bash (4.3-11+deb8u2) over (4.3-11+deb8u1) ... Setting up bash (4.3-11+deb8u2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9793 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.12-2+deb8u2_amd64.deb ... Unpacking e2fslibs:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up e2fslibs:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9792 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.12-2+deb8u2_amd64.deb ... Unpacking e2fsprogs (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up e2fsprogs (1.42.12-2+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9791 files and directories currently installed.) Preparing to unpack .../perl-base_5.20.2-3+deb8u12_amd64.deb ... Unpacking perl-base (5.20.2-3+deb8u12) over (5.20.2-3+deb8u11) ... Setting up perl-base (5.20.2-3+deb8u12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9791 files and directories currently installed.) Preparing to unpack .../tar_1.27.1-2+deb8u2_amd64.deb ... Unpacking tar (1.27.1-2+deb8u2) over (1.27.1-2+deb8u1) ... Processing triggers for mime-support (3.58) ... Setting up tar (1.27.1-2+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9791 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-7+deb8u2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-7+deb8u2) over (1.0.6-7+b3) ... Setting up libbz2-1.0:amd64 (1.0.6-7+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9790 files and directories currently installed.) Preparing to unpack .../libquadmath0_4.9.2-10+deb8u2_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgfortran3_4.9.2-10+deb8u2_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Preparing to unpack .../gcc-4.9-base_4.9.2-10+deb8u2_amd64.deb ... Unpacking gcc-4.9-base:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9790 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9.2-10+deb8u2_amd64.deb ... Unpacking libgcc1:amd64 (1:4.9.2-10+deb8u2) over (1:4.9.2-10+deb8u1) ... Setting up libgcc1:amd64 (1:4.9.2-10+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9790 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.2-10+deb8u2_amd64.deb ... Unpacking libstdc++6:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9790 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2+deb8u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-2+deb8u1) over (1:1.2.8.dfsg-2+b1) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-2+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9789 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.9.8.6_amd64.deb ... Unpacking libapt-pkg4.12:amd64 (1.0.9.8.6) over (1.0.9.8.4) ... Setting up libapt-pkg4.12:amd64 (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9789 files and directories currently installed.) Preparing to unpack .../apt_1.0.9.8.6_amd64.deb ... Unpacking apt (1.0.9.8.6) over (1.0.9.8.4) ... Setting up apt (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9789 files and directories currently installed.) Preparing to unpack .../libudev1_215-17+deb8u13_amd64.deb ... Unpacking libudev1:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libudev1:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9789 files and directories currently installed.) Preparing to unpack .../udev_215-17+deb8u13_amd64.deb ... Unpacking udev (215-17+deb8u13) over (215-17+deb8u7) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up udev (215-17+deb8u13) ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. A chroot environment has been detected, udev not started. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9789 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libcomerr2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9788 files and directories currently installed.) Preparing to unpack .../libss2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libss2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libss2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9787 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.3-2+deb8u8_amd64.deb ... Unpacking libgcrypt20:amd64 (1.6.3-2+deb8u8) over (1.6.3-2+deb8u4) ... Setting up libgcrypt20:amd64 (1.6.3-2+deb8u8) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9787 files and directories currently installed.) Preparing to unpack .../libsystemd0_215-17+deb8u13_amd64.deb ... Unpacking libsystemd0:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libsystemd0:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9787 files and directories currently installed.) Preparing to unpack .../systemd_215-17+deb8u13_amd64.deb ... Unpacking systemd (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd (215-17+deb8u13) ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9787 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u13_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd-sysv (215-17+deb8u13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9787 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u12_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u12) over (1.0.1t-1+deb8u8) ... Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u6_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) over (3.8.7.1-1+deb8u2) ... Preparing to unpack .../libexpat1_2.1.0-6+deb8u6_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u6) over (2.1.0-6+deb8u4) ... Preparing to unpack .../python3.4_3.4.2-1+deb8u7_amd64.deb ... Unpacking python3.4 (3.4.2-1+deb8u7) over (3.4.2-1) ... Preparing to unpack .../libpython3.4-stdlib_3.4.2-1+deb8u7_amd64.deb ... Unpacking libpython3.4-stdlib:amd64 (3.4.2-1+deb8u7) over (3.4.2-1) ... Preparing to unpack .../python3.4-minimal_3.4.2-1+deb8u7_amd64.deb ... Unpacking python3.4-minimal (3.4.2-1+deb8u7) over (3.4.2-1) ... Preparing to unpack .../libpython3.4-minimal_3.4.2-1+deb8u7_amd64.deb ... Unpacking libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) over (3.4.2-1) ... Preparing to unpack .../tzdata_2019c-0+deb8u1_all.deb ... Unpacking tzdata (2019c-0+deb8u1) over (2018e-0+deb8u1) ... Processing triggers for mime-support (3.58) ... Setting up tzdata (2019c-0+deb8u1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 12 04:58:10 UTC 2022. Universal Time is now: Mon Sep 12 04:58:10 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9790 files and directories currently installed.) Preparing to unpack .../python3-reportlab-accel_3.1.8-3+deb8u2_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.1.8-3+deb8u2) over (3.1.8-3+deb8u1) ... Preparing to unpack .../python3-reportlab_3.1.8-3+deb8u2_all.deb ... Unpacking python3-reportlab (3.1.8-3+deb8u2) over (3.1.8-3+deb8u1) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u2) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u2) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u6) ... Setting up libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) ... Setting up python3.4-minimal (3.4.2-1+deb8u7) ... Setting up libpython3.4-stdlib:amd64 (3.4.2-1+deb8u7) ... Setting up python3.4 (3.4.2-1+deb8u7) ... Setting up python3-reportlab-accel:amd64 (3.1.8-3+deb8u2) ... Setting up python3-reportlab (3.1.8-3+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-yf', 'dist-upgrade'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.4s DUMP: ea587cb5da6f95fbc79bf1681671e909 - 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython-sql'] 0m21.5s DUMP: Package: python3-biopython-sql Source: python-biopython Version: 1.64+dfsg-5 Installed-Size: 147 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any (>= 3.3.2-2~), python3-biopython Description-en: Biopython support for the BioSQL database schema (Python 3) This is the Biopython interface to a BioSQL database (see www.biosql.org for details). BioPerl, BioJava and BioRuby also provide their own BioSQL interfaces onto the same shared SQL schema. . This package is targeting Python version 3. Description-md5: 425dee256ecc52323e188045e122383a Homepage: http://biopython.org Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython-sql_1.64+dfsg-5_all.deb Size: 27784 MD5sum: fc97670db0380c035967080d623e6e04 SHA1: 60c1e031c78f480a9398bd4364715724e1b08ec2 SHA256: 3134cd8151240adcb277b3257ea4620ddddbeab3290426978b32b1be1c2e1861 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython-sql'] 0m21.5s INFO: apt-cache knows about the following packages: python3-biopython-sql 0m21.5s INFO: Running scripts pre_install 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_database-server'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_database-server'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_exceptions'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_exceptions'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_extras'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_extras'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy'] 0m21.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy', 'python3-biopython-sql'] 0m21.5s DUMP: python3-biopython-sql: Installed: 1.64+dfsg-5 Candidate: 1.64+dfsg-5 Version table: *** 1.64+dfsg-5 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy', 'python3-biopython-sql'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-y', 'install', 'python3-biopython-sql'] 0m21.7s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-biopython-sql is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-y', 'install', 'python3-biopython-sql'] 0m21.7s INFO: Running scripts post_install 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_install_exceptions'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_install_exceptions'] 0m21.8s INFO: Running scripts post_distupgrade 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_zz_backports'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_distupgrade_zz_backports'] 0m21.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m22.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m22.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m22.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m22.7s INFO: Running scripts pre_install 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_database-server'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_database-server'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_exceptions'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_exceptions'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_extras'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_extras'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy'] 0m22.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy', 'python3-biopython-sql'] 0m22.8s DUMP: python3-biopython-sql: Installed: 1.64+dfsg-5 Candidate: 1.64+dfsg-5 Version table: *** 1.64+dfsg-5 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-cache', 'policy', 'python3-biopython-sql'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-y', 'install', 'python3-biopython-sql=1.64+dfsg-5'] 0m23.0s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-biopython-sql is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', '-y', 'install', 'python3-biopython-sql=1.64+dfsg-5'] 0m23.0s INFO: Running scripts post_install 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_install_exceptions'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_install_exceptions'] 0m23.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m23.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m24.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', '-ac', '--ignore-obsolete'] 0m24.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', '-ac', '--ignore-obsolete'] 0m24.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.8s DUMP: 0.15.6 0m24.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.8s INFO: Running adequate version 0.15.6 now. 0m24.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'python3-biopython-sql'] 0m24.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'python3-biopython-sql'] 0m24.8s INFO: Running scripts pre_remove 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_exceptions'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/pre_remove_exceptions'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.6s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.6 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed dh-python dh-python 1.20141111-2 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+deb8u2 install ok installed e2fsprogs e2fsprogs 1.42.12-2+deb8u2 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u2 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.6 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblas-common libblas-common 1.2.20110419-10 install ok installed libblas3 libblas3 1.2.20110419-10 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+deb8u2 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+deb8u2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u6 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u2 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u8 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblapack3 liblapack3 3.5.0-4 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmpdec2:amd64 libmpdec2 2.4.1-1 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.4.2-2 install ok installed libpython3.4-minimal:amd64 libpython3.4-minimal 3.4.2-1+deb8u7 install ok installed libpython3.4-stdlib:amd64 libpython3.4-stdlib 3.4.2-1+deb8u7 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u2 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u6 install ok installed libss2:amd64 libss2 1.42.12-2+deb8u2 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u12 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u13 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u13 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u12 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed python3 python3 3.4.2-2 install ok installed python3-biopython python3-biopython 1.64+dfsg-5 install ok installed python3-biopython-sql python3-biopython-sql 1.64+dfsg-5 install ok installed python3-minimal python3-minimal 3.4.2-2 install ok installed python3-numpy python3-numpy 1:1.8.2-2 install ok installed python3-reportlab python3-reportlab 3.1.8-3+deb8u2 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.1.8-3+deb8u2 install ok installed python3.4 python3.4 3.4.2-1+deb8u7 install ok installed python3.4-minimal python3.4-minimal 3.4.2-1+deb8u7 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u13 install ok installed systemd-sysv systemd-sysv 215-17+deb8u13 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u2 install ok installed tzdata tzdata 2019c-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u13 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+deb8u1 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', 'remove', 'dh-python', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libgfortran3:amd64', 'liblapack3', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.4-stdlib:amd64', 'libquadmath0:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'mime-support', 'python3', 'python3-biopython', 'python3-minimal', 'python3-numpy', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.4', 'python3.4-minimal', 'python3-biopython-sql'] 0m26.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: dh-python libblas-common libblas3 libexpat1 libffi6 libgfortran3 liblapack3 libmpdec2 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libquadmath0 libsqlite3-0 libssl1.0.0 mime-support python3 python3-biopython python3-biopython-sql python3-minimal python3-numpy python3-reportlab python3-reportlab-accel python3.4 python3.4-minimal 0 upgraded, 0 newly installed, 24 to remove and 0 not upgraded. After this operation, 50.6 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9790 files and directories currently installed.) Removing python3-biopython-sql (1.64+dfsg-5) ... Removing python3-biopython (1.64+dfsg-5) ... Removing python3-reportlab (3.1.8-3+deb8u2) ... Removing python3-reportlab-accel:amd64 (3.1.8-3+deb8u2) ... Removing python3-numpy (1:1.8.2-2) ... Removing liblapack3 (3.5.0-4) ... Removing libblas3 (1.2.20110419-10) ... Removing libblas-common (1.2.20110419-10) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing python3 (3.4.2-2) ... Removing python3.4 (3.4.2-1+deb8u7) ... Removing python3-minimal (3.4.2-2) ... Removing python3.4-minimal (3.4.2-1+deb8u7) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libpython3-stdlib:amd64 (3.4.2-2) ... Removing libpython3.4-stdlib:amd64 (3.4.2-1+deb8u7) ... dpkg-query: no packages found matching pkgname Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libmpdec2:amd64 (2.4.1-1) ... Removing libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) ... dpkg-query: no packages found matching pkgname Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing mime-support (3.58) ... Removing dh-python (1.20141111-2) ... dpkg: warning: while removing dh-python, directory '/usr/share/dh-python/dhpython/build' not empty so not removed Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', 'remove', 'dh-python', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libgfortran3:amd64', 'liblapack3', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.4-stdlib:amd64', 'libquadmath0:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'mime-support', 'python3', 'python3-biopython', 'python3-minimal', 'python3-numpy', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.4', 'python3.4-minimal', 'python3-biopython-sql'] 0m26.7s INFO: Running scripts post_remove 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_remove_exceptions'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_remove_exceptions'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg', '--purge', 'dh-python', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libgfortran3:amd64', 'liblapack3', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.4-stdlib:amd64', 'libquadmath0:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'mime-support', 'python3', 'python3-biopython', 'python3-minimal', 'python3-numpy', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.4', 'python3.4-minimal'] 0m26.8s DUMP: dpkg: warning: ignoring request to remove dh-python which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed (Reading database ... 7477 files and directories currently installed.) Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u2) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed Removing libmpdec2:amd64 (2.4.1-1) ... Purging configuration files for libmpdec2:amd64 (2.4.1-1) ... dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Removing libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) ... Purging configuration files for libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) ... dpkg-query: no packages found matching pkgname dpkg: warning: ignoring request to remove libpython3.4-stdlib which isn't installed Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... Removing python3 (3.4.2-2) ... Purging configuration files for python3 (3.4.2-2) ... dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed Removing python3.4 (3.4.2-1+deb8u7) ... Purging configuration files for python3.4 (3.4.2-1+deb8u7) ... Removing python3.4-minimal (3.4.2-1+deb8u7) ... Purging configuration files for python3.4-minimal (3.4.2-1+deb8u7) ... 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg', '--purge', 'dh-python', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libgfortran3:amd64', 'liblapack3', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.4-stdlib:amd64', 'libquadmath0:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'mime-support', 'python3', 'python3-biopython', 'python3-minimal', 'python3-numpy', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.4', 'python3.4-minimal'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg', '--purge', 'python3-biopython-sql'] 0m26.8s DUMP: dpkg: warning: ignoring request to remove python3-biopython-sql which isn't installed 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg', '--purge', 'python3-biopython-sql'] 0m26.8s INFO: Running scripts post_purge 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_purge_exceptions'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_purge_exceptions'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg', '--purge', '--pending'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg', '--purge', '--pending'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg', '--remove', '--pending'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg', '--remove', '--pending'] 0m26.8s INFO: Running scripts post_test 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_test_exceptions'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'tmp/scripts/post_test_exceptions'] 0m26.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m27.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg-divert', '--list'] 0m27.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'dpkg-divert', '--list'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', 'clean'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z', 'apt-get', 'clean'] 0m27.2s DEBUG: Recording chroot state 0m27.6s INFO: Warning: Package purging left files on system: /usr/share/dh-python/dhpython/__pycache__/ not owned /usr/share/dh-python/dhpython/build/__pycache__/ not owned 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/shm'] 0m28.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/shm'] 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/console'] 0m28.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/console'] 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/ptmx'] 0m28.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/ptmx'] 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/pts'] 0m28.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/dev/pts'] 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/proc'] 0m28.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z/proc'] 0m28.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m28.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_ln_j_7z'] 0m28.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_ln_j_7z 0m28.2s INFO: PASS: Upgrading between Debian distributions. 0m28.2s INFO: PASS: All tests. 0m28.2s INFO: piuparts run ends. ret=0 End: 2022-09-12 04:58:19 GMT