Start: 2022-09-09 05:43:29 GMT [jessie] Package: python3-biopython Source: python-biopython Version: 1.64+dfsg-5 Installed-Size: 7674 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-numpy (>= 1:1.8.0), python3-numpy-abi9, python3 (>= 3.4~), python3 (<< 3.5), libc6 (>= 2.14), python3-reportlab Recommends: python-biopython-doc (= 1.64+dfsg-5), ncbi-blast+ Suggests: python3-tk, python-reportlab, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, phyml, prank, probcons, python-mysqldb, python3-matplotlib, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, raxml, samtools, t-coffee, wise (>= 2.4.1-16) Description: Python library for bioinformatics (implemented in Python 3) Homepage: http://biopython.org Description-md5: 47e7a48daf3e838fe28613e3af745403 Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython_1.64+dfsg-5_amd64.deb Size: 1133312 MD5sum: 9937d10579bc6aef7287f69d55c13f0f SHA1: 67fa84172dfcbc4330119f611a2c2941228775dd SHA256: 40390ca6e419c6d885210d1ce6b77aa78cf052e7e010409132297e20cb6cc1fa [jessie-lts] Package: python3-biopython Source: python-biopython Version: 1.64+dfsg-5 Installed-Size: 7674 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-numpy (>= 1:1.8.0), python3-numpy-abi9, python3 (>= 3.4~), python3 (<< 3.5), libc6 (>= 2.14), python3-reportlab Recommends: python-biopython-doc (= 1.64+dfsg-5), ncbi-blast+ Suggests: python3-tk, python-reportlab, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, phyml, prank, probcons, python-mysqldb, python3-matplotlib, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, raxml, samtools, t-coffee, wise (>= 2.4.1-16) Description: Python library for bioinformatics (implemented in Python 3) Homepage: http://biopython.org Description-md5: 47e7a48daf3e838fe28613e3af745403 Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython_1.64+dfsg-5_amd64.deb Size: 1133312 MD5sum: 9937d10579bc6aef7287f69d55c13f0f SHA1: 67fa84172dfcbc4330119f611a2c2941228775dd SHA256: 40390ca6e419c6d885210d1ce6b77aa78cf052e7e010409132297e20cb6cc1fa Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt python3-biopython=1.64+dfsg-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt python3-biopython=1.64+dfsg-5 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-17-amd64 #1 SMP Debian 5.10.136-1 (2022-08-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp1vthg93z 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp1vthg93z 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp1vthg93z/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmp1vthg93z/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', 'update'] 0m2.9s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m5.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (2122 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_minimize'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_minimize'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.1s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat 0m5.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m5.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m5.4s INFO: Running scripts is_testable 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s INFO: Running scripts pre_test 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_test_root_password'] 0m5.4s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_test_root_password'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython'] 0m5.5s DUMP: Package: python3-biopython Source: python-biopython Version: 1.64+dfsg-5 Installed-Size: 7674 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-numpy (>= 1:1.8.0), python3-numpy-abi9, python3 (>= 3.4~), python3 (<< 3.5), libc6 (>= 2.14), python3-reportlab Recommends: python-biopython-doc (= 1.64+dfsg-5), ncbi-blast+ Suggests: python3-tk, python-reportlab, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, phyml, prank, probcons, python-mysqldb, python3-matplotlib, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, raxml, samtools, t-coffee, wise (>= 2.4.1-16) Description-en: Python library for bioinformatics (implemented in Python 3) The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. . This package is targeting Python version 3. Description-md5: 47e7a48daf3e838fe28613e3af745403 Homepage: http://biopython.org Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython_1.64+dfsg-5_amd64.deb Size: 1133312 MD5sum: 9937d10579bc6aef7287f69d55c13f0f SHA1: 67fa84172dfcbc4330119f611a2c2941228775dd SHA256: 40390ca6e419c6d885210d1ce6b77aa78cf052e7e010409132297e20cb6cc1fa 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython'] 0m5.5s INFO: apt-cache knows about the following packages: python3-biopython 0m5.5s INFO: Running scripts pre_install 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy'] 0m5.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy', 'python3-biopython'] 0m5.5s DUMP: python3-biopython: Installed: (none) Candidate: 1.64+dfsg-5 Version table: 1.64+dfsg-5 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy', 'python3-biopython'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-y', 'install', 'python3-biopython'] 0m13.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: dh-python libblas-common libblas3 libexpat1 libffi6 libgfortran3 liblapack3 libmpdec2 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libquadmath0 libsqlite3-0 libssl1.0.0 mime-support python3 python3-minimal python3-numpy python3-reportlab python3-reportlab-accel python3.4 python3.4-minimal Suggested packages: python3-doc python3-tk python3-venv python-reportlab bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phyml prank probcons python-mysqldb python3-matplotlib python3-pil python3-rdflib python3-renderpm python3-psycopg2 raxml samtools t-coffee wise gcc gfortran python-numpy-doc python3-dev python3-nose python3-numpy-dbg pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3.4-venv python3.4-doc binutils binfmt-support Recommended packages: file python-biopython-doc ncbi-blast+ The following NEW packages will be installed: dh-python libblas-common libblas3 libexpat1 libffi6 libgfortran3 liblapack3 libmpdec2 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libquadmath0 libsqlite3-0 libssl1.0.0 mime-support python3 python3-biopython python3-minimal python3-numpy python3-reportlab python3-reportlab-accel python3.4 python3.4-minimal 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 11.9 MB of archives. After this operation, 50.4 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:2 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:3 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:4 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:5 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:6 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:7 http://deb.debian.org/debian/ jessie/main libmpdec2 amd64 2.4.1-1 [85.7 kB] Get:8 http://deb.debian.org/debian/ jessie/main libpython3.4-minimal amd64 3.4.2-1 [492 kB] Get:9 http://deb.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:10 http://deb.debian.org/debian/ jessie/main libpython3.4-stdlib amd64 3.4.2-1 [2088 kB] Get:11 http://deb.debian.org/debian/ jessie/main python3.4-minimal amd64 3.4.2-1 [1646 kB] Get:12 http://deb.debian.org/debian/ jessie/main python3.4 amd64 3.4.2-1 [204 kB] Get:13 http://deb.debian.org/debian/ jessie/main python3-minimal amd64 3.4.2-2 [34.7 kB] Get:14 http://deb.debian.org/debian/ jessie/main libpython3-stdlib amd64 3.4.2-2 [18.1 kB] Get:15 http://deb.debian.org/debian/ jessie/main python3 amd64 3.4.2-2 [21.2 kB] Get:16 http://deb.debian.org/debian/ jessie/main dh-python all 1.20141111-2 [66.4 kB] Get:17 http://deb.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:18 http://deb.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:19 http://deb.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:20 http://deb.debian.org/debian/ jessie/main python3-numpy amd64 1:1.8.2-2 [1628 kB] Get:21 http://deb.debian.org/debian/ jessie/main python3-reportlab-accel amd64 3.1.8-3+deb8u1 [21.2 kB] Get:22 http://deb.debian.org/debian/ jessie/main python3-reportlab all 3.1.8-3+deb8u1 [450 kB] Get:23 http://deb.debian.org/debian/ jessie/main python3-biopython amd64 1.64+dfsg-5 [1133 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.9 MB in 0s (14.7 MB/s) Selecting previously unselected package libssl1.0.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+deb8u1_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+deb8u1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_4.9.2-10+deb8u1_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.1-1_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.1-1) ... Selecting previously unselected package libpython3.4-minimal:amd64. Preparing to unpack .../libpython3.4-minimal_3.4.2-1_amd64.deb ... Unpacking libpython3.4-minimal:amd64 (3.4.2-1) ... 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Preparing to unpack .../python3-reportlab-accel_3.1.8-3+deb8u1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.1.8-3+deb8u1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../python3-reportlab_3.1.8-3+deb8u1_all.deb ... Unpacking python3-reportlab (3.1.8-3+deb8u1) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../python3-biopython_1.64+dfsg-5_amd64.deb ... Unpacking python3-biopython (1.64+dfsg-5) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libmpdec2:amd64 (2.4.1-1) ... Setting up libpython3.4-minimal:amd64 (3.4.2-1) ... Setting up mime-support (3.58) ... Setting up libpython3.4-stdlib:amd64 (3.4.2-1) ... Setting up python3.4-minimal (3.4.2-1) ... Setting up python3.4 (3.4.2-1) ... Setting up python3-minimal (3.4.2-2) ... Setting up libpython3-stdlib:amd64 (3.4.2-2) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up python3 (3.4.2-2) ... Setting up dh-python (1.20141111-2) ... Setting up python3-numpy (1:1.8.2-2) ... Setting up python3-reportlab-accel:amd64 (3.1.8-3+deb8u1) ... Setting up python3-reportlab (3.1.8-3+deb8u1) ... Setting up python3-biopython (1.64+dfsg-5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-y', 'install', 'python3-biopython'] 0m13.3s INFO: Running scripts post_install 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_install_exceptions'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_install_exceptions'] 0m13.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m13.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m13.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp1vthg93z to jessie-lts 0m13.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main deb http://security.debian.org jessie/updates main 0m13.9s INFO: Running scripts pre_distupgrade 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', 'update'] 0m16.8s DUMP: Get:1 http://security.debian.org jessie/updates InRelease [44.9 kB] Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Get:2 http://security.debian.org jessie/updates/main amd64 Packages [781 kB] Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Get:3 http://security.debian.org jessie/updates/main Translation-en [401 kB] Fetched 1227 kB in 1s (912 kB/s) Reading package lists... 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', 'update'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-yf', 'dist-upgrade'] 0m25.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt bash e2fslibs e2fsprogs gcc-4.9-base libapt-pkg4.12 libbz2-1.0 libcomerr2 libexpat1 libgcc1 libgcrypt20 libgfortran3 libpython3.4-minimal libpython3.4-stdlib libquadmath0 libsqlite3-0 libss2 libssl1.0.0 libstdc++6 libsystemd0 libudev1 perl-base python3-reportlab python3-reportlab-accel python3.4 python3.4-minimal systemd systemd-sysv tar tzdata udev zlib1g 32 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 17.8 MB of archives. After this operation, 3922 kB of additional disk space will be used. Get:1 http://security.debian.org/ jessie/updates/main bash amd64 4.3-11+deb8u2 [1173 kB] Get:2 http://security.debian.org/ jessie/updates/main e2fslibs amd64 1.42.12-2+deb8u2 [186 kB] Get:3 http://security.debian.org/ jessie/updates/main e2fsprogs amd64 1.42.12-2+deb8u2 [751 kB] Get:4 http://security.debian.org/ jessie/updates/main perl-base amd64 5.20.2-3+deb8u12 [1231 kB] Get:5 http://security.debian.org/ jessie/updates/main tar amd64 1.27.1-2+deb8u2 [676 kB] Get:6 http://security.debian.org/ jessie/updates/main libbz2-1.0 amd64 1.0.6-7+deb8u2 [43.3 kB] Get:7 http://security.debian.org/ jessie/updates/main libquadmath0 amd64 4.9.2-10+deb8u2 [129 kB] Get:8 http://security.debian.org/ jessie/updates/main libgfortran3 amd64 4.9.2-10+deb8u2 [254 kB] Get:9 http://security.debian.org/ jessie/updates/main gcc-4.9-base amd64 4.9.2-10+deb8u2 [160 kB] Get:10 http://security.debian.org/ jessie/updates/main libgcc1 amd64 1:4.9.2-10+deb8u2 [39.4 kB] Get:11 http://security.debian.org/ jessie/updates/main libstdc++6 amd64 4.9.2-10+deb8u2 [273 kB] Get:12 http://security.debian.org/ jessie/updates/main zlib1g amd64 1:1.2.8.dfsg-2+deb8u1 [88.3 kB] Get:13 http://security.debian.org/ jessie/updates/main libapt-pkg4.12 amd64 1.0.9.8.6 [794 kB] Get:14 http://security.debian.org/ jessie/updates/main apt amd64 1.0.9.8.6 [1109 kB] Get:15 http://security.debian.org/ jessie/updates/main libudev1 amd64 215-17+deb8u13 [58.8 kB] Get:16 http://security.debian.org/ jessie/updates/main udev amd64 215-17+deb8u13 [878 kB] Get:17 http://security.debian.org/ jessie/updates/main libcomerr2 amd64 1.42.12-2+deb8u2 [60.6 kB] Get:18 http://security.debian.org/ jessie/updates/main libss2 amd64 1.42.12-2+deb8u2 [64.9 kB] Get:19 http://security.debian.org/ jessie/updates/main libgcrypt20 amd64 1.6.3-2+deb8u8 [394 kB] Get:20 http://security.debian.org/ jessie/updates/main libsystemd0 amd64 215-17+deb8u13 [90.5 kB] Get:21 http://security.debian.org/ jessie/updates/main systemd amd64 215-17+deb8u13 [2555 kB] Get:22 http://security.debian.org/ jessie/updates/main systemd-sysv amd64 215-17+deb8u13 [37.5 kB] Get:23 http://security.debian.org/ jessie/updates/main libssl1.0.0 amd64 1.0.1t-1+deb8u12 [1049 kB] Get:24 http://security.debian.org/ jessie/updates/main libsqlite3-0 amd64 3.8.7.1-1+deb8u6 [439 kB] Get:25 http://security.debian.org/ jessie/updates/main libexpat1 amd64 2.1.0-6+deb8u6 [80.3 kB] Get:26 http://security.debian.org/ jessie/updates/main python3.4 amd64 3.4.2-1+deb8u7 [205 kB] Get:27 http://security.debian.org/ jessie/updates/main libpython3.4-stdlib amd64 3.4.2-1+deb8u7 [2095 kB] Get:28 http://security.debian.org/ jessie/updates/main python3.4-minimal amd64 3.4.2-1+deb8u7 [1646 kB] Get:29 http://security.debian.org/ jessie/updates/main libpython3.4-minimal amd64 3.4.2-1+deb8u7 [495 kB] Get:30 http://security.debian.org/ jessie/updates/main tzdata all 2019c-0+deb8u1 [234 kB] Get:31 http://security.debian.org/ jessie/updates/main python3-reportlab-accel amd64 3.1.8-3+deb8u2 [21.4 kB] Get:32 http://security.debian.org/ jessie/updates/main python3-reportlab all 3.1.8-3+deb8u2 [450 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.8 MB in 0s (40.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9784 files and directories currently installed.) Preparing to unpack .../bash_4.3-11+deb8u2_amd64.deb ... Unpacking bash (4.3-11+deb8u2) over (4.3-11+deb8u1) ... Setting up bash (4.3-11+deb8u2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9781 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.2-10+deb8u2_amd64.deb ... Unpacking libstdc++6:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9780 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libcomerr2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9778 files and directories currently installed.) Preparing to unpack .../libsystemd0_215-17+deb8u13_amd64.deb ... Unpacking libsystemd0:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libsystemd0:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9778 files and directories currently installed.) Preparing to unpack .../systemd_215-17+deb8u13_amd64.deb ... Unpacking systemd (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd (215-17+deb8u13) ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9778 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u13_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd-sysv (215-17+deb8u13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9778 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u12_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u12) over (1.0.1t-1+deb8u8) ... Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u6_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) over (3.8.7.1-1+deb8u2) ... Preparing to unpack .../libexpat1_2.1.0-6+deb8u6_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u6) over (2.1.0-6+deb8u4) ... Preparing to unpack .../python3.4_3.4.2-1+deb8u7_amd64.deb ... Unpacking python3.4 (3.4.2-1+deb8u7) over (3.4.2-1) ... Preparing to unpack .../libpython3.4-stdlib_3.4.2-1+deb8u7_amd64.deb ... Unpacking libpython3.4-stdlib:amd64 (3.4.2-1+deb8u7) over (3.4.2-1) ... Preparing to unpack .../python3.4-minimal_3.4.2-1+deb8u7_amd64.deb ... Unpacking python3.4-minimal (3.4.2-1+deb8u7) over (3.4.2-1) ... Preparing to unpack .../libpython3.4-minimal_3.4.2-1+deb8u7_amd64.deb ... Unpacking libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) over (3.4.2-1) ... Preparing to unpack .../tzdata_2019c-0+deb8u1_all.deb ... Unpacking tzdata (2019c-0+deb8u1) over (2018e-0+deb8u1) ... Processing triggers for mime-support (3.58) ... Setting up tzdata (2019c-0+deb8u1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 9 05:43:52 UTC 2022. Universal Time is now: Fri Sep 9 05:43:52 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9781 files and directories currently installed.) Preparing to unpack .../python3-reportlab-accel_3.1.8-3+deb8u2_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.1.8-3+deb8u2) over (3.1.8-3+deb8u1) ... Preparing to unpack .../python3-reportlab_3.1.8-3+deb8u2_all.deb ... Unpacking python3-reportlab (3.1.8-3+deb8u2) over (3.1.8-3+deb8u1) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u2) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u2) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u6) ... Setting up libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) ... Setting up python3.4-minimal (3.4.2-1+deb8u7) ... Setting up libpython3.4-stdlib:amd64 (3.4.2-1+deb8u7) ... Setting up python3.4 (3.4.2-1+deb8u7) ... Setting up python3-reportlab-accel:amd64 (3.1.8-3+deb8u2) ... Setting up python3-reportlab (3.1.8-3+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-yf', 'dist-upgrade'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.4s DUMP: ea587cb5da6f95fbc79bf1681671e909 - 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython'] 0m25.4s DUMP: Package: python3-biopython Source: python-biopython Version: 1.64+dfsg-5 Installed-Size: 7674 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-numpy (>= 1:1.8.0), python3-numpy-abi9, python3 (>= 3.4~), python3 (<< 3.5), libc6 (>= 2.14), python3-reportlab Recommends: python-biopython-doc (= 1.64+dfsg-5), ncbi-blast+ Suggests: python3-tk, python-reportlab, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, phyml, prank, probcons, python-mysqldb, python3-matplotlib, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, raxml, samtools, t-coffee, wise (>= 2.4.1-16) Description-en: Python library for bioinformatics (implemented in Python 3) The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. . This package is targeting Python version 3. Description-md5: 47e7a48daf3e838fe28613e3af745403 Homepage: http://biopython.org Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython_1.64+dfsg-5_amd64.deb Size: 1133312 MD5sum: 9937d10579bc6aef7287f69d55c13f0f SHA1: 67fa84172dfcbc4330119f611a2c2941228775dd SHA256: 40390ca6e419c6d885210d1ce6b77aa78cf052e7e010409132297e20cb6cc1fa 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython'] 0m25.4s INFO: apt-cache knows about the following packages: python3-biopython 0m25.4s INFO: Running scripts pre_install 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_database-server'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_database-server'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_exceptions'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_exceptions'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_extras'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_extras'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy'] 0m25.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy', 'python3-biopython'] 0m25.5s DUMP: python3-biopython: Installed: 1.64+dfsg-5 Candidate: 1.64+dfsg-5 Version table: *** 1.64+dfsg-5 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy', 'python3-biopython'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-y', 'install', 'python3-biopython'] 0m25.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-biopython is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-y', 'install', 'python3-biopython'] 0m25.8s INFO: Running scripts post_install 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_install_exceptions'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_install_exceptions'] 0m25.9s INFO: Running scripts post_distupgrade 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_exceptions'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_exceptions'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_zz_backports'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_distupgrade_zz_backports'] 0m25.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m26.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m26.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m27.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m27.1s INFO: Running scripts pre_install 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_database-server'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_database-server'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_exceptions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_exceptions'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_extras'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_extras'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy'] 0m27.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy', 'python3-biopython'] 0m27.1s DUMP: python3-biopython: Installed: 1.64+dfsg-5 Candidate: 1.64+dfsg-5 Version table: *** 1.64+dfsg-5 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-cache', 'policy', 'python3-biopython'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-y', 'install', 'python3-biopython=1.64+dfsg-5'] 0m27.3s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-biopython is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', '-y', 'install', 'python3-biopython=1.64+dfsg-5'] 0m27.3s INFO: Running scripts post_install 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_install_exceptions'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_install_exceptions'] 0m27.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m27.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m28.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', '-ac', '--ignore-obsolete'] 0m28.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', '-ac', '--ignore-obsolete'] 0m28.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m28.9s DUMP: 0.15.6 0m28.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m28.9s INFO: Running adequate version 0.15.6 now. 0m28.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'python3-biopython'] 0m29.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'python3-biopython'] 0m29.0s INFO: Running scripts pre_remove 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_exceptions'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/pre_remove_exceptions'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.8s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.6 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed dh-python dh-python 1.20141111-2 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+deb8u2 install ok installed e2fsprogs e2fsprogs 1.42.12-2+deb8u2 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u2 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.6 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblas-common libblas-common 1.2.20110419-10 install ok installed libblas3 libblas3 1.2.20110419-10 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+deb8u2 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+deb8u2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u6 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u2 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u8 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblapack3 liblapack3 3.5.0-4 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmpdec2:amd64 libmpdec2 2.4.1-1 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.4.2-2 install ok installed libpython3.4-minimal:amd64 libpython3.4-minimal 3.4.2-1+deb8u7 install ok installed libpython3.4-stdlib:amd64 libpython3.4-stdlib 3.4.2-1+deb8u7 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u2 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u6 install ok installed libss2:amd64 libss2 1.42.12-2+deb8u2 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u12 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u13 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u13 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u12 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed python3 python3 3.4.2-2 install ok installed python3-biopython python3-biopython 1.64+dfsg-5 install ok installed python3-minimal python3-minimal 3.4.2-2 install ok installed python3-numpy python3-numpy 1:1.8.2-2 install ok installed python3-reportlab python3-reportlab 3.1.8-3+deb8u2 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.1.8-3+deb8u2 install ok installed python3.4 python3.4 3.4.2-1+deb8u7 install ok installed python3.4-minimal python3.4-minimal 3.4.2-1+deb8u7 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u13 install ok installed systemd-sysv systemd-sysv 215-17+deb8u13 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u2 install ok installed tzdata tzdata 2019c-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u13 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+deb8u1 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', 'remove', 'dh-python', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libgfortran3:amd64', 'liblapack3', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.4-stdlib:amd64', 'libquadmath0:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'mime-support', 'python3', 'python3-minimal', 'python3-numpy', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.4', 'python3.4-minimal', 'python3-biopython'] 0m30.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: dh-python libblas-common libblas3 libexpat1 libffi6 libgfortran3 liblapack3 libmpdec2 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libquadmath0 libsqlite3-0 libssl1.0.0 mime-support python3 python3-biopython python3-minimal python3-numpy python3-reportlab python3-reportlab-accel python3.4 python3.4-minimal 0 upgraded, 0 newly installed, 23 to remove and 0 not upgraded. After this operation, 50.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9781 files and directories currently installed.) Removing python3-biopython (1.64+dfsg-5) ... Removing python3-reportlab (3.1.8-3+deb8u2) ... Removing python3-reportlab-accel:amd64 (3.1.8-3+deb8u2) ... Removing python3-numpy (1:1.8.2-2) ... Removing liblapack3 (3.5.0-4) ... Removing libblas3 (1.2.20110419-10) ... Removing libblas-common (1.2.20110419-10) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing python3 (3.4.2-2) ... Removing python3.4 (3.4.2-1+deb8u7) ... Removing python3-minimal (3.4.2-2) ... Removing python3.4-minimal (3.4.2-1+deb8u7) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libpython3-stdlib:amd64 (3.4.2-2) ... Removing libpython3.4-stdlib:amd64 (3.4.2-1+deb8u7) ... dpkg-query: no packages found matching pkgname Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libmpdec2:amd64 (2.4.1-1) ... Removing libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) ... dpkg-query: no packages found matching pkgname Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing mime-support (3.58) ... Removing dh-python (1.20141111-2) ... dpkg: warning: while removing dh-python, directory '/usr/share/dh-python/dhpython/build' not empty so not removed Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', 'remove', 'dh-python', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libgfortran3:amd64', 'liblapack3', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.4-stdlib:amd64', 'libquadmath0:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'mime-support', 'python3', 'python3-minimal', 'python3-numpy', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.4', 'python3.4-minimal', 'python3-biopython'] 0m30.8s INFO: Running scripts post_remove 0m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_remove_exceptions'] 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_remove_exceptions'] 0m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg', '--purge', 'dh-python', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libgfortran3:amd64', 'liblapack3', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.4-stdlib:amd64', 'libquadmath0:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'mime-support', 'python3', 'python3-minimal', 'python3-numpy', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.4', 'python3.4-minimal'] 0m31.0s DUMP: dpkg: warning: ignoring request to remove dh-python which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed (Reading database ... 7477 files and directories currently installed.) Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u2) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed Removing libmpdec2:amd64 (2.4.1-1) ... Purging configuration files for libmpdec2:amd64 (2.4.1-1) ... dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Removing libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) ... Purging configuration files for libpython3.4-minimal:amd64 (3.4.2-1+deb8u7) ... dpkg-query: no packages found matching pkgname dpkg: warning: ignoring request to remove libpython3.4-stdlib which isn't installed Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... Removing python3 (3.4.2-2) ... Purging configuration files for python3 (3.4.2-2) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed Removing python3.4 (3.4.2-1+deb8u7) ... Purging configuration files for python3.4 (3.4.2-1+deb8u7) ... Removing python3.4-minimal (3.4.2-1+deb8u7) ... Purging configuration files for python3.4-minimal (3.4.2-1+deb8u7) ... 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg', '--purge', 'dh-python', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libgfortran3:amd64', 'liblapack3', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.4-minimal:amd64', 'libpython3.4-stdlib:amd64', 'libquadmath0:amd64', 'libsqlite3-0:amd64', 'libssl1.0.0:amd64', 'mime-support', 'python3', 'python3-minimal', 'python3-numpy', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3.4', 'python3.4-minimal'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg', '--purge', 'python3-biopython'] 0m31.0s DUMP: dpkg: warning: ignoring request to remove python3-biopython which isn't installed 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg', '--purge', 'python3-biopython'] 0m31.0s INFO: Running scripts post_purge 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_purge_exceptions'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_purge_exceptions'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg', '--purge', '--pending'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg', '--purge', '--pending'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg', '--remove', '--pending'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg', '--remove', '--pending'] 0m31.0s INFO: Running scripts post_test 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_test_exceptions'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'tmp/scripts/post_test_exceptions'] 0m31.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m31.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg-divert', '--list'] 0m31.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'dpkg-divert', '--list'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', 'clean'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1vthg93z', 'apt-get', 'clean'] 0m31.4s DEBUG: Recording chroot state 0m31.8s INFO: Warning: Package purging left files on system: /usr/share/dh-python/dhpython/__pycache__/ not owned /usr/share/dh-python/dhpython/build/__pycache__/ not owned 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/shm'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/shm'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/console'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/console'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/ptmx'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/ptmx'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/pts'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/dev/pts'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/proc'] 0m32.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1vthg93z/proc'] 0m32.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m32.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1vthg93z'] 0m32.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp1vthg93z 0m32.3s INFO: PASS: Upgrading between Debian distributions. 0m32.3s INFO: PASS: All tests. 0m32.3s INFO: piuparts run ends. ret=0 End: 2022-09-09 05:44:02 GMT