Start: 2022-09-14 11:08:05 GMT [jessie] Package: r-bioc-cummerbund Version: 2.6.1-1 Installed-Size: 8091 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.1.1-1), r-cran-rsqlite, r-cran-reshape2, r-cran-ggplot2, r-cran-fastcluster, r-bioc-biocgenerics, r-bioc-rtracklayer, r-bioc-gviz Description: tool for analysis of Cufflinks RNA-Seq output Homepage: http://compbio.mit.edu/cummeRbund/ Description-md5: b8e141232b6d17ca7806a2bfbcdae869 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-cummerbund/r-bioc-cummerbund_2.6.1-1_all.deb Size: 1850540 MD5sum: 38552382c8f003509b6e18f9323b6cae SHA1: 01e975bbbbfcd9c7c71bb186ab9551347648c76b SHA256: b93f3a05e03291da759df2d34c8ec0459ceca8eb10ad4ed5ff45b4e73aa5fe06 [jessie-lts] Package: r-bioc-cummerbund Version: 2.6.1-1 Installed-Size: 8091 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.1.1-1), r-cran-rsqlite, r-cran-reshape2, r-cran-ggplot2, r-cran-fastcluster, r-bioc-biocgenerics, r-bioc-rtracklayer, r-bioc-gviz Description: tool for analysis of Cufflinks RNA-Seq output Homepage: http://compbio.mit.edu/cummeRbund/ Description-md5: b8e141232b6d17ca7806a2bfbcdae869 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-cummerbund/r-bioc-cummerbund_2.6.1-1_all.deb Size: 1850540 MD5sum: 38552382c8f003509b6e18f9323b6cae SHA1: 01e975bbbbfcd9c7c71bb186ab9551347648c76b SHA256: b93f3a05e03291da759df2d34c8ec0459ceca8eb10ad4ed5ff45b4e73aa5fe06 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt r-bioc-cummerbund=2.6.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt r-bioc-cummerbund=2.6.1-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpz1i79tss 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpz1i79tss 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpz1i79tss/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpz1i79tss/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', 'update'] 0m2.9s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s INFO: Running scripts post_setup 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (3784 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m4.6s INFO: Running scripts is_testable 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s INFO: Running scripts pre_test 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-cummerbund'] 0m4.7s DUMP: Package: r-bioc-cummerbund Version: 2.6.1-1 Installed-Size: 8091 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.1.1-1), r-cran-rsqlite, r-cran-reshape2, r-cran-ggplot2, r-cran-fastcluster, r-bioc-biocgenerics, r-bioc-rtracklayer, r-bioc-gviz Description-en: tool for analysis of Cufflinks RNA-Seq output Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations. Description-md5: b8e141232b6d17ca7806a2bfbcdae869 Homepage: http://compbio.mit.edu/cummeRbund/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-cummerbund/r-bioc-cummerbund_2.6.1-1_all.deb Size: 1850540 MD5sum: 38552382c8f003509b6e18f9323b6cae SHA1: 01e975bbbbfcd9c7c71bb186ab9551347648c76b SHA256: b93f3a05e03291da759df2d34c8ec0459ceca8eb10ad4ed5ff45b4e73aa5fe06 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-cummerbund'] 0m4.7s INFO: apt-cache knows about the following packages: r-bioc-cummerbund 0m4.7s INFO: Running scripts pre_install 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy'] 0m4.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 0m4.7s DUMP: r-bioc-cummerbund: Installed: (none) Candidate: 2.6.1-1 Version table: 2.6.1-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-y', 'install', 'r-bioc-cummerbund'] 0m19.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2 libice6 libidn11 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libnettle4 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng12-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libtcl8.5 libthai-data libthai0 libtiff5 libtk8.5 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler r-base-core r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-variantannotation r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-chron r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-fail r-cran-fastcluster r-cran-foreach r-cran-foreign r-cran-formula r-cran-ggplot2 r-cran-gtable r-cran-hmisc r-cran-iterators r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-mass r-cran-matrixstats r-cran-munsell r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-proto r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-stringr r-cran-survival r-cran-xml unzip x11-common xdg-utils zip Suggested packages: gnutls-bin krb5-doc krb5-user tcl8.5 tk8.5 r-cran-getopt ess r-doc-info r-doc-pdf r-mathlib r-base-html r-bioc-snpstats r-cran-rmysql r-cran-inline r-cran-runit gvfs-bin Recommended packages: ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libsasl2-modules xml-core r-recommended r-base-dev r-doc-html r-cran-doparallel r-bioc-shortread r-cran-sp r-cran-mapproj r-cran-domc r-cran-abind libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2 libice6 libidn11 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libnettle4 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng12-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libtcl8.5 libthai-data libthai0 libtiff5 libtk8.5 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler r-base-core r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-variantannotation r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-chron r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-fail r-cran-fastcluster r-cran-foreach r-cran-foreign r-cran-formula r-cran-ggplot2 r-cran-gtable r-cran-hmisc r-cran-iterators r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-mass r-cran-matrixstats r-cran-munsell r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-proto r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-stringr r-cran-survival r-cran-xml unzip x11-common xdg-utils zip 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 93.7 MB of archives. After this operation, 181 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:2 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:3 http://deb.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:4 http://deb.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:5 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:6 http://deb.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:7 http://deb.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:8 http://deb.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:9 http://deb.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:10 http://deb.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:11 http://deb.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:12 http://deb.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:13 http://deb.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:14 http://deb.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:15 http://deb.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:16 http://deb.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:17 http://deb.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:18 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:19 http://deb.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:20 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:21 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:22 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:23 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:24 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:25 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:26 http://deb.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:27 http://deb.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:28 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:29 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:30 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:31 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:32 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:33 http://deb.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:34 http://deb.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:35 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:36 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:37 http://deb.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:38 http://deb.debian.org/debian/ jessie/main librtmp1 amd64 2.4+20150115.gita107cef-1+deb8u1 [60.0 kB] Get:39 http://deb.debian.org/debian/ jessie/main libssh2-1 amd64 1.4.3-4.1+deb8u1 [125 kB] Get:40 http://deb.debian.org/debian/ jessie/main libcurl3 amd64 7.38.0-4+deb8u11 [260 kB] Get:41 http://deb.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:42 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:43 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:44 http://deb.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:45 http://deb.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:46 http://deb.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:47 http://deb.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:48 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:49 http://deb.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:50 http://deb.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:51 http://deb.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:52 http://deb.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:53 http://deb.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:54 http://deb.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:55 http://deb.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:56 http://deb.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:57 http://deb.debian.org/debian/ jessie/main libtcl8.5 amd64 8.5.17-1 [737 kB] Get:58 http://deb.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:59 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:60 http://deb.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:61 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:62 http://deb.debian.org/debian/ jessie/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:63 http://deb.debian.org/debian/ jessie/main libtk8.5 amd64 8.5.17-1 [749 kB] Get:64 http://deb.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:65 http://deb.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:66 http://deb.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:67 http://deb.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:68 http://deb.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:69 http://deb.debian.org/debian/ jessie/main zip amd64 3.0-8 [228 kB] Get:70 http://deb.debian.org/debian/ jessie/main unzip amd64 6.0-16+deb8u3 [162 kB] Get:71 http://deb.debian.org/debian/ jessie/main xdg-utils all 1.1.0~rc1+git20111210-7.4+deb8u1 [65.1 kB] Get:72 http://deb.debian.org/debian/ jessie/main r-base-core amd64 3.1.1-1+deb8u1 [19.9 MB] Get:73 http://deb.debian.org/debian/ jessie/main littler amd64 0.2.1-1 [36.2 kB] Get:74 http://deb.debian.org/debian/ jessie/main r-cran-dbi amd64 0.3.1-1 [157 kB] Get:75 http://deb.debian.org/debian/ jessie/main r-cran-rsqlite amd64 0.11.4-3 [305 kB] Get:76 http://deb.debian.org/debian/ jessie/main r-bioc-biocgenerics all 0.10.0-1 [397 kB] Get:77 http://deb.debian.org/debian/ jessie/main r-bioc-biobase amd64 2.24.0-1 [2198 kB] Get:78 http://deb.debian.org/debian/ jessie/main r-bioc-iranges amd64 1.22.10-1 [1827 kB] Get:79 http://deb.debian.org/debian/ jessie/main r-bioc-genomeinfodb all 1.0.2-2 [221 kB] Get:80 http://deb.debian.org/debian/ jessie/main r-bioc-annotationdbi all 1.26.1-1 [4178 kB] Get:81 http://deb.debian.org/debian/ jessie/main r-cran-codetools all 0.2-9-1 [45.7 kB] Get:82 http://deb.debian.org/debian/ jessie/main r-cran-iterators all 1.0.7-1 [306 kB] Get:83 http://deb.debian.org/debian/ jessie/main r-cran-foreach all 1.4.2-1 [371 kB] Get:84 http://deb.debian.org/debian/ jessie/main r-cran-checkmate amd64 1.5.0-1 [255 kB] Get:85 http://deb.debian.org/debian/ jessie/main r-cran-bbmisc amd64 1.7-1 [264 kB] Get:86 http://deb.debian.org/debian/ jessie/main r-cran-brew amd64 1.0-6-1 [61.4 kB] Get:87 http://deb.debian.org/debian/ jessie/main r-cran-digest amd64 0.6.4-1 [81.5 kB] Get:88 http://deb.debian.org/debian/ jessie/main r-cran-pkgkitten all 0.1.2-1 [17.1 kB] Get:89 http://deb.debian.org/debian/ jessie/main r-cran-rcpp amd64 0.11.3-1 [2044 kB] Get:90 http://deb.debian.org/debian/ jessie/main r-cran-plyr amd64 1.8.1-2 [738 kB] Get:91 http://deb.debian.org/debian/ jessie/main r-cran-stringr all 0.6.2-2 [71.8 kB] Get:92 http://deb.debian.org/debian/ jessie/main r-cran-base64enc amd64 0.1-2-1 [19.9 kB] Get:93 http://deb.debian.org/debian/ jessie/main r-cran-sendmailr amd64 1.2-1-1 [29.0 kB] Get:94 http://deb.debian.org/debian/ jessie/main r-cran-fail amd64 1.2-1 [42.5 kB] Get:95 http://deb.debian.org/debian/ jessie/main r-cran-batchjobs amd64 1.4-1 [407 kB] Get:96 http://deb.debian.org/debian/ jessie/main r-bioc-biocparallel all 0.6.1-1 [321 kB] Get:97 http://deb.debian.org/debian/ jessie/main r-cran-xml amd64 3.98-1.1-1 [1809 kB] Get:98 http://deb.debian.org/debian/ jessie/main r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:99 http://deb.debian.org/debian/ jessie/main r-cran-rcurl amd64 1.95-4.3-1+deb8u1 [527 kB] Get:100 http://deb.debian.org/debian/ jessie/main r-bioc-biomart all 2.20.0-1 [365 kB] Get:101 http://deb.debian.org/debian/ jessie/main r-bioc-xvector amd64 0.4.0-1 [333 kB] Get:102 http://deb.debian.org/debian/ jessie/main r-bioc-biostrings amd64 2.32.1-1 [2251 kB] Get:103 http://deb.debian.org/debian/ jessie/main r-cran-dichromat all 2.0.0-3 [146 kB] Get:104 http://deb.debian.org/debian/ jessie/main r-cran-foreign amd64 0.8.61-1 [213 kB] Get:105 http://deb.debian.org/debian/ jessie/main r-cran-chron amd64 2.3-45-1 [102 kB] Get:106 http://deb.debian.org/debian/ jessie/main r-cran-lattice amd64 0.20-29-1 [713 kB] Get:107 http://deb.debian.org/debian/ jessie/main r-cran-cluster amd64 1.15.3-1 [475 kB] Get:108 http://deb.debian.org/debian/ jessie/main r-cran-survival amd64 2.37-7-1 [4443 kB] Get:109 http://deb.debian.org/debian/ jessie/main r-cran-formula all 1.1-2-1 [159 kB] Get:110 http://deb.debian.org/debian/ jessie/main r-cran-rpart amd64 4.1-8-1 [862 kB] Get:111 http://deb.debian.org/debian/ jessie/main r-cran-rcolorbrewer all 1.0-5-2 [25.5 kB] Get:112 http://deb.debian.org/debian/ jessie/main r-cran-latticeextra amd64 0.6-26-1 [2065 kB] Get:113 http://deb.debian.org/debian/ jessie/main r-cran-hmisc amd64 3.14-5-1 [1526 kB] Get:114 http://deb.debian.org/debian/ jessie/main r-cran-nnet amd64 7.3-8-1 [94.2 kB] Get:115 http://deb.debian.org/debian/ jessie/main r-cran-colorspace amd64 1.2-4-1 [348 kB] Get:116 http://deb.debian.org/debian/ jessie/main r-cran-munsell all 0.4.2-1 [116 kB] Get:117 http://deb.debian.org/debian/ jessie/main r-cran-labeling all 0.3-1 [39.9 kB] Get:118 http://deb.debian.org/debian/ jessie/main r-cran-scales all 0.2.4-1 [153 kB] Get:119 http://deb.debian.org/debian/ jessie/main r-bioc-genomicranges amd64 1.16.4-2 [1120 kB] Get:120 http://deb.debian.org/debian/ jessie/main r-bioc-rsamtools amd64 1.16.1-2 [3132 kB] Get:121 http://deb.debian.org/debian/ jessie/main r-bioc-bsgenome all 1.32.0-1 [763 kB] Get:122 http://deb.debian.org/debian/ jessie/main r-bioc-genomicalignments amd64 1.0.6-1 [1244 kB] Get:123 http://deb.debian.org/debian/ jessie/main r-bioc-rtracklayer amd64 1.24.2-1 [1776 kB] Get:124 http://deb.debian.org/debian/ jessie/main r-bioc-genomicfeatures all 1.16.3-1 [886 kB] Get:125 http://deb.debian.org/debian/ jessie/main r-bioc-variantannotation amd64 1.10.5-1 [1788 kB] Get:126 http://deb.debian.org/debian/ jessie/main r-bioc-biovizbase amd64 1.12.3-1 [2524 kB] Get:127 http://deb.debian.org/debian/ jessie/main r-cran-reshape2 amd64 1.4-1 [83.5 kB] Get:128 http://deb.debian.org/debian/ jessie/main r-cran-gtable all 0.1.2-1.1 [62.3 kB] Get:129 http://deb.debian.org/debian/ jessie/main r-cran-mass amd64 7.3-34-1 [1015 kB] Get:130 http://deb.debian.org/debian/ jessie/main r-cran-proto amd64 0.3-10-1 [462 kB] Get:131 http://deb.debian.org/debian/ jessie/main r-cran-ggplot2 all 1.0.0-1 [2660 kB] Get:132 http://deb.debian.org/debian/ jessie/main r-cran-fastcluster amd64 1.1.13-1 [175 kB] Get:133 http://deb.debian.org/debian/ jessie/main r-cran-r.methodss3 amd64 1.6.1-1 [54.4 kB] Get:134 http://deb.debian.org/debian/ jessie/main r-cran-matrixstats amd64 0.10.3-1 [206 kB] Get:135 http://deb.debian.org/debian/ jessie/main r-bioc-gviz all 1.8.4-1 [3111 kB] Get:136 http://deb.debian.org/debian/ jessie/main r-bioc-cummerbund all 2.6.1-1 [1851 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.7 MB in 2s (34.7 MB/s) Selecting previously unselected package libssl1.0.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libnettle4:amd64. 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Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../r-bioc-genomeinfodb_1.0.2-2_all.deb ... Unpacking r-bioc-genomeinfodb (1.0.2-2) ... Selecting previously unselected package r-bioc-annotationdbi. Preparing to unpack .../r-bioc-annotationdbi_1.26.1-1_all.deb ... Unpacking r-bioc-annotationdbi (1.26.1-1) ... Selecting previously unselected package r-cran-codetools. Preparing to unpack .../r-cran-codetools_0.2-9-1_all.deb ... Unpacking r-cran-codetools (0.2-9-1) ... Selecting previously unselected package r-cran-iterators. Preparing to unpack .../r-cran-iterators_1.0.7-1_all.deb ... Unpacking r-cran-iterators (1.0.7-1) ... Selecting previously unselected package r-cran-foreach. Preparing to unpack .../r-cran-foreach_1.4.2-1_all.deb ... Unpacking r-cran-foreach (1.4.2-1) ... Selecting previously unselected package r-cran-checkmate. Preparing to unpack .../r-cran-checkmate_1.5.0-1_amd64.deb ... Unpacking r-cran-checkmate (1.5.0-1) ... 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Preparing to unpack .../r-cran-stringr_0.6.2-2_all.deb ... Unpacking r-cran-stringr (0.6.2-2) ... Selecting previously unselected package r-cran-base64enc. Preparing to unpack .../r-cran-base64enc_0.1-2-1_amd64.deb ... Unpacking r-cran-base64enc (0.1-2-1) ... Selecting previously unselected package r-cran-sendmailr. Preparing to unpack .../r-cran-sendmailr_1.2-1-1_amd64.deb ... Unpacking r-cran-sendmailr (1.2-1-1) ... Selecting previously unselected package r-cran-fail. Preparing to unpack .../r-cran-fail_1.2-1_amd64.deb ... Unpacking r-cran-fail (1.2-1) ... Selecting previously unselected package r-cran-batchjobs. Preparing to unpack .../r-cran-batchjobs_1.4-1_amd64.deb ... Unpacking r-cran-batchjobs (1.4-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../r-bioc-biocparallel_0.6.1-1_all.deb ... Unpacking r-bioc-biocparallel (0.6.1-1) ... Selecting previously unselected package r-cran-xml. Preparing to unpack .../r-cran-xml_3.98-1.1-1_amd64.deb ... Unpacking r-cran-xml (3.98-1.1-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../r-cran-bitops_1.0-6-1_amd64.deb ... Unpacking r-cran-bitops (1.0-6-1) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../r-cran-rcurl_1.95-4.3-1+deb8u1_amd64.deb ... Unpacking r-cran-rcurl (1.95-4.3-1+deb8u1) ... Selecting previously unselected package r-bioc-biomart. Preparing to unpack .../r-bioc-biomart_2.20.0-1_all.deb ... Unpacking r-bioc-biomart (2.20.0-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../r-bioc-xvector_0.4.0-1_amd64.deb ... Unpacking r-bioc-xvector (0.4.0-1) ... Selecting previously unselected package r-bioc-biostrings. Preparing to unpack .../r-bioc-biostrings_2.32.1-1_amd64.deb ... Unpacking r-bioc-biostrings (2.32.1-1) ... Selecting previously unselected package r-cran-dichromat. Preparing to unpack .../r-cran-dichromat_2.0.0-3_all.deb ... Unpacking r-cran-dichromat (2.0.0-3) ... Selecting previously unselected package r-cran-foreign. Preparing to unpack .../r-cran-foreign_0.8.61-1_amd64.deb ... Unpacking r-cran-foreign (0.8.61-1) ... Selecting previously unselected package r-cran-chron. Preparing to unpack .../r-cran-chron_2.3-45-1_amd64.deb ... Unpacking r-cran-chron (2.3-45-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../r-cran-lattice_0.20-29-1_amd64.deb ... Unpacking r-cran-lattice (0.20-29-1) ... Selecting previously unselected package r-cran-cluster. Preparing to unpack .../r-cran-cluster_1.15.3-1_amd64.deb ... Unpacking r-cran-cluster (1.15.3-1) ... Selecting previously unselected package r-cran-survival. Preparing to unpack .../r-cran-survival_2.37-7-1_amd64.deb ... Unpacking r-cran-survival (2.37-7-1) ... Selecting previously unselected package r-cran-formula. Preparing to unpack .../r-cran-formula_1.1-2-1_all.deb ... Unpacking r-cran-formula (1.1-2-1) ... Selecting previously unselected package r-cran-rpart. Preparing to unpack .../r-cran-rpart_4.1-8-1_amd64.deb ... Unpacking r-cran-rpart (4.1-8-1) ... Selecting previously unselected package r-cran-rcolorbrewer. Preparing to unpack .../r-cran-rcolorbrewer_1.0-5-2_all.deb ... Unpacking r-cran-rcolorbrewer (1.0-5-2) ... Selecting previously unselected package r-cran-latticeextra. Preparing to unpack .../r-cran-latticeextra_0.6-26-1_amd64.deb ... Unpacking r-cran-latticeextra (0.6-26-1) ... Selecting previously unselected package r-cran-hmisc. Preparing to unpack .../r-cran-hmisc_3.14-5-1_amd64.deb ... Unpacking r-cran-hmisc (3.14-5-1) ... Selecting previously unselected package r-cran-nnet. Preparing to unpack .../r-cran-nnet_7.3-8-1_amd64.deb ... Unpacking r-cran-nnet (7.3-8-1) ... Selecting previously unselected package r-cran-colorspace. Preparing to unpack .../r-cran-colorspace_1.2-4-1_amd64.deb ... Unpacking r-cran-colorspace (1.2-4-1) ... Selecting previously unselected package r-cran-munsell. Preparing to unpack .../r-cran-munsell_0.4.2-1_all.deb ... Unpacking r-cran-munsell (0.4.2-1) ... Selecting previously unselected package r-cran-labeling. Preparing to unpack .../r-cran-labeling_0.3-1_all.deb ... Unpacking r-cran-labeling (0.3-1) ... Selecting previously unselected package r-cran-scales. Preparing to unpack .../r-cran-scales_0.2.4-1_all.deb ... Unpacking r-cran-scales (0.2.4-1) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../r-bioc-genomicranges_1.16.4-2_amd64.deb ... Unpacking r-bioc-genomicranges (1.16.4-2) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../r-bioc-rsamtools_1.16.1-2_amd64.deb ... Unpacking r-bioc-rsamtools (1.16.1-2) ... Selecting previously unselected package r-bioc-bsgenome. Preparing to unpack .../r-bioc-bsgenome_1.32.0-1_all.deb ... Unpacking r-bioc-bsgenome (1.32.0-1) ... Selecting previously unselected package r-bioc-genomicalignments. Preparing to unpack .../r-bioc-genomicalignments_1.0.6-1_amd64.deb ... Unpacking r-bioc-genomicalignments (1.0.6-1) ... Selecting previously unselected package r-bioc-rtracklayer. Preparing to unpack .../r-bioc-rtracklayer_1.24.2-1_amd64.deb ... Unpacking r-bioc-rtracklayer (1.24.2-1) ... Selecting previously unselected package r-bioc-genomicfeatures. Preparing to unpack .../r-bioc-genomicfeatures_1.16.3-1_all.deb ... Unpacking r-bioc-genomicfeatures (1.16.3-1) ... Selecting previously unselected package r-bioc-variantannotation. Preparing to unpack .../r-bioc-variantannotation_1.10.5-1_amd64.deb ... Unpacking r-bioc-variantannotation (1.10.5-1) ... Selecting previously unselected package r-bioc-biovizbase. Preparing to unpack .../r-bioc-biovizbase_1.12.3-1_amd64.deb ... Unpacking r-bioc-biovizbase (1.12.3-1) ... Selecting previously unselected package r-cran-reshape2. Preparing to unpack .../r-cran-reshape2_1.4-1_amd64.deb ... Unpacking r-cran-reshape2 (1.4-1) ... Selecting previously unselected package r-cran-gtable. Preparing to unpack .../r-cran-gtable_0.1.2-1.1_all.deb ... Unpacking r-cran-gtable (0.1.2-1.1) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../r-cran-mass_7.3-34-1_amd64.deb ... Unpacking r-cran-mass (7.3-34-1) ... Selecting previously unselected package r-cran-proto. Preparing to unpack .../r-cran-proto_0.3-10-1_amd64.deb ... Unpacking r-cran-proto (0.3-10-1) ... Selecting previously unselected package r-cran-ggplot2. Preparing to unpack .../r-cran-ggplot2_1.0.0-1_all.deb ... Unpacking r-cran-ggplot2 (1.0.0-1) ... Selecting previously unselected package r-cran-fastcluster. Preparing to unpack .../r-cran-fastcluster_1.1.13-1_amd64.deb ... Unpacking r-cran-fastcluster (1.1.13-1) ... Selecting previously unselected package r-cran-r.methodss3. Preparing to unpack .../r-cran-r.methodss3_1.6.1-1_amd64.deb ... Unpacking r-cran-r.methodss3 (1.6.1-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../r-cran-matrixstats_0.10.3-1_amd64.deb ... Unpacking r-cran-matrixstats (0.10.3-1) ... Selecting previously unselected package r-bioc-gviz. Preparing to unpack .../r-bioc-gviz_1.8.4-1_all.deb ... Unpacking r-bioc-gviz (1.8.4-1) ... Selecting previously unselected package r-bioc-cummerbund. Preparing to unpack .../r-bioc-cummerbund_2.6.1-1_all.deb ... Unpacking r-bioc-cummerbund (2.6.1-1) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Setting up libcurl3:amd64 (7.38.0-4+deb8u11) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libthai-data (0.1.21-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libtcl8.5:amd64 (8.5.17-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.5:amd64 (8.5.17-1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpaper-utils (1.1.24+nmu4) ... Setting up zip (3.0-8) ... Setting up unzip (6.0-16+deb8u3) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Setting up r-base-core (3.1.1-1+deb8u1) ... Creating config file /etc/R/Renviron with new version Setting up littler (0.2.1-1) ... Setting up r-cran-dbi (0.3.1-1) ... Setting up r-cran-rsqlite (0.11.4-3) ... Setting up r-bioc-biocgenerics (0.10.0-1) ... Setting up r-bioc-biobase (2.24.0-1) ... Setting up r-bioc-iranges (1.22.10-1) ... Setting up r-bioc-genomeinfodb (1.0.2-2) ... Setting up r-bioc-annotationdbi (1.26.1-1) ... Setting up r-cran-codetools (0.2-9-1) ... Setting up r-cran-iterators (1.0.7-1) ... Setting up r-cran-foreach (1.4.2-1) ... Setting up r-cran-checkmate (1.5.0-1) ... Setting up r-cran-bbmisc (1.7-1) ... Setting up r-cran-brew (1.0-6-1) ... Setting up r-cran-digest (0.6.4-1) ... Setting up r-cran-pkgkitten (0.1.2-1) ... Setting up r-cran-rcpp (0.11.3-1) ... Setting up r-cran-plyr (1.8.1-2) ... Setting up r-cran-stringr (0.6.2-2) ... Setting up r-cran-base64enc (0.1-2-1) ... Setting up r-cran-sendmailr (1.2-1-1) ... Setting up r-cran-fail (1.2-1) ... Setting up r-cran-batchjobs (1.4-1) ... Setting up r-bioc-biocparallel (0.6.1-1) ... Setting up r-cran-xml (3.98-1.1-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-cran-rcurl (1.95-4.3-1+deb8u1) ... Setting up r-bioc-biomart (2.20.0-1) ... Setting up r-bioc-xvector (0.4.0-1) ... Setting up r-bioc-biostrings (2.32.1-1) ... Setting up r-cran-dichromat (2.0.0-3) ... Setting up r-cran-foreign (0.8.61-1) ... Setting up r-cran-chron (2.3-45-1) ... Setting up r-cran-lattice (0.20-29-1) ... Setting up r-cran-cluster (1.15.3-1) ... Setting up r-cran-survival (2.37-7-1) ... Setting up r-cran-formula (1.1-2-1) ... Setting up r-cran-rpart (4.1-8-1) ... Setting up r-cran-rcolorbrewer (1.0-5-2) ... Setting up r-cran-latticeextra (0.6-26-1) ... Setting up r-cran-hmisc (3.14-5-1) ... Setting up r-cran-nnet (7.3-8-1) ... Setting up r-cran-colorspace (1.2-4-1) ... Setting up r-cran-munsell (0.4.2-1) ... Setting up r-cran-labeling (0.3-1) ... Setting up r-cran-scales (0.2.4-1) ... Setting up r-bioc-genomicranges (1.16.4-2) ... Setting up r-bioc-rsamtools (1.16.1-2) ... Setting up r-bioc-bsgenome (1.32.0-1) ... Setting up r-bioc-genomicalignments (1.0.6-1) ... Setting up r-bioc-rtracklayer (1.24.2-1) ... Setting up r-bioc-genomicfeatures (1.16.3-1) ... Setting up r-bioc-variantannotation (1.10.5-1) ... Setting up r-bioc-biovizbase (1.12.3-1) ... Setting up r-cran-reshape2 (1.4-1) ... Setting up r-cran-gtable (0.1.2-1.1) ... Setting up r-cran-mass (7.3-34-1) ... Setting up r-cran-proto (0.3-10-1) ... Setting up r-cran-ggplot2 (1.0.0-1) ... Setting up r-cran-fastcluster (1.1.13-1) ... Setting up r-cran-r.methodss3 (1.6.1-1) ... Setting up r-cran-matrixstats (0.10.3-1) ... Setting up r-bioc-gviz (1.8.4-1) ... Setting up r-bioc-cummerbund (2.6.1-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-y', 'install', 'r-bioc-cummerbund'] 0m19.6s INFO: Running scripts post_install 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_install_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_install_exceptions'] 0m19.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m20.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m20.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpz1i79tss to jessie-lts 0m20.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main deb http://security.debian.org jessie/updates main 0m20.2s INFO: Running scripts pre_distupgrade 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', 'update'] 0m22.7s DUMP: Get:1 http://security.debian.org jessie/updates InRelease [44.9 kB] Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Get:2 http://security.debian.org jessie/updates/main amd64 Packages [781 kB] Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Get:3 http://security.debian.org jessie/updates/main Translation-en [401 kB] Fetched 1227 kB in 1s (1106 kB/s) Reading package lists... 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', 'update'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-yf', 'dist-upgrade'] 0m30.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libbsd0 The following packages will be upgraded: apt bash e2fslibs e2fsprogs gcc-4.9-base libapt-pkg4.12 libbz2-1.0 libcomerr2 libcurl3 libexpat1 libfreetype6 libgcc1 libgcrypt20 libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgomp1 libgssapi-krb5-2 libharfbuzz0b libice6 libidn11 libjpeg62-turbo libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libpixman-1-0 libquadmath0 libsasl2-2 libsasl2-modules-db libsqlite3-0 libss2 libssh2-1 libssl1.0.0 libstdc++6 libsystemd0 libtasn1-6 libtiff5 libudev1 libx11-6 libx11-data libxdmcp6 libxml2 perl-base systemd systemd-sysv tar tzdata udev unzip zlib1g 51 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 21.4 MB of archives. After this operation, 4875 kB of additional disk space will be used. Get:1 http://security.debian.org/ jessie/updates/main bash amd64 4.3-11+deb8u2 [1173 kB] Get:2 http://security.debian.org/ jessie/updates/main e2fslibs amd64 1.42.12-2+deb8u2 [186 kB] Get:3 http://security.debian.org/ jessie/updates/main e2fsprogs amd64 1.42.12-2+deb8u2 [751 kB] Get:4 http://security.debian.org/ jessie/updates/main perl-base amd64 5.20.2-3+deb8u12 [1231 kB] Get:5 http://security.debian.org/ jessie/updates/main tar amd64 1.27.1-2+deb8u2 [676 kB] Get:6 http://security.debian.org/ jessie/updates/main libbz2-1.0 amd64 1.0.6-7+deb8u2 [43.3 kB] Get:7 http://security.debian.org/ jessie/updates/main libquadmath0 amd64 4.9.2-10+deb8u2 [129 kB] Get:8 http://security.debian.org/ jessie/updates/main libgomp1 amd64 4.9.2-10+deb8u2 [37.8 kB] Get:9 http://security.debian.org/ jessie/updates/main libgfortran3 amd64 4.9.2-10+deb8u2 [254 kB] Get:10 http://security.debian.org/ jessie/updates/main gcc-4.9-base amd64 4.9.2-10+deb8u2 [160 kB] Get:11 http://security.debian.org/ jessie/updates/main libgcc1 amd64 1:4.9.2-10+deb8u2 [39.4 kB] Get:12 http://security.debian.org/ jessie/updates/main libstdc++6 amd64 4.9.2-10+deb8u2 [273 kB] Get:13 http://security.debian.org/ jessie/updates/main zlib1g amd64 1:1.2.8.dfsg-2+deb8u1 [88.3 kB] Get:14 http://security.debian.org/ jessie/updates/main libapt-pkg4.12 amd64 1.0.9.8.6 [794 kB] Get:15 http://security.debian.org/ jessie/updates/main apt amd64 1.0.9.8.6 [1109 kB] Get:16 http://security.debian.org/ jessie/updates/main libudev1 amd64 215-17+deb8u13 [58.8 kB] Get:17 http://security.debian.org/ jessie/updates/main udev amd64 215-17+deb8u13 [878 kB] Get:18 http://security.debian.org/ jessie/updates/main libcomerr2 amd64 1.42.12-2+deb8u2 [60.6 kB] Get:19 http://security.debian.org/ jessie/updates/main libss2 amd64 1.42.12-2+deb8u2 [64.9 kB] Get:20 http://security.debian.org/ jessie/updates/main libgcrypt20 amd64 1.6.3-2+deb8u8 [394 kB] Get:21 http://security.debian.org/ jessie/updates/main libsystemd0 amd64 215-17+deb8u13 [90.5 kB] Get:22 http://security.debian.org/ jessie/updates/main systemd amd64 215-17+deb8u13 [2555 kB] Get:23 http://security.debian.org/ jessie/updates/main systemd-sysv amd64 215-17+deb8u13 [37.5 kB] Get:24 http://security.debian.org/ jessie/updates/main libssl1.0.0 amd64 1.0.1t-1+deb8u12 [1049 kB] Get:25 http://security.debian.org/ jessie/updates/main libtasn1-6 amd64 4.2-3+deb8u4 [49.3 kB] Get:26 http://security.debian.org/ jessie/updates/main libgnutls-deb0-28 amd64 3.3.30-0+deb8u1 [749 kB] Get:27 http://security.debian.org/ jessie/updates/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u5 [152 kB] Get:28 http://security.debian.org/ jessie/updates/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u5 [303 kB] Get:29 http://security.debian.org/ jessie/updates/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u5 [59.5 kB] Get:30 http://security.debian.org/ jessie/updates/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u5 [115 kB] Get:31 http://security.debian.org/ jessie/updates/main libidn11 amd64 1.29-1+deb8u3 [137 kB] Get:32 http://security.debian.org/ jessie/updates/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u2 [67.3 kB] Get:33 http://security.debian.org/ jessie/updates/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u2 [105 kB] Get:34 http://security.debian.org/ jessie/updates/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u6 [218 kB] Get:35 http://security.debian.org/ jessie/updates/main libsqlite3-0 amd64 3.8.7.1-1+deb8u6 [439 kB] Get:36 http://security.debian.org/ jessie/updates/main libxml2 amd64 2.9.1+dfsg1-5+deb8u8 [803 kB] Get:37 http://security.debian.org/ jessie/updates/main libbsd0 amd64 0.7.0-2+deb8u1 [68.2 kB] Get:38 http://security.debian.org/ jessie/updates/main libssh2-1 amd64 1.4.3-4.1+deb8u6 [128 kB] Get:39 http://security.debian.org/ jessie/updates/main libcurl3 amd64 7.38.0-4+deb8u16 [261 kB] Get:40 http://security.debian.org/ jessie/updates/main libexpat1 amd64 2.1.0-6+deb8u6 [80.3 kB] Get:41 http://security.debian.org/ jessie/updates/main libfreetype6 amd64 2.5.2-3+deb8u4 [467 kB] Get:42 http://security.debian.org/ jessie/updates/main libglib2.0-0 amd64 2.42.1-1+deb8u3 [2400 kB] Get:43 http://security.debian.org/ jessie/updates/main libharfbuzz0b amd64 0.9.35-2+deb8u1 [486 kB] Get:44 http://security.debian.org/ jessie/updates/main libice6 amd64 2:1.0.9-1+deb8u1 [58.8 kB] Get:45 http://security.debian.org/ jessie/updates/main libpixman-1-0 amd64 0.32.6-3+deb8u1 [506 kB] Get:46 http://security.debian.org/ jessie/updates/main libjpeg62-turbo amd64 1:1.3.1-12+deb8u2 [117 kB] Get:47 http://security.debian.org/ jessie/updates/main libtiff5 amd64 4.0.3-12.3+deb8u10 [223 kB] Get:48 http://security.debian.org/ jessie/updates/main libx11-data all 2:1.6.2-3+deb8u2 [126 kB] Get:49 http://security.debian.org/ jessie/updates/main libx11-6 amd64 2:1.6.2-3+deb8u2 [729 kB] Get:50 http://security.debian.org/ jessie/updates/main libxdmcp6 amd64 1:1.1.1-1+deb8u1 [24.7 kB] Get:51 http://security.debian.org/ jessie/updates/main tzdata all 2019c-0+deb8u1 [234 kB] Get:52 http://security.debian.org/ jessie/updates/main unzip amd64 6.0-16+deb8u6 [164 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.4 MB in 0s (34.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14513 files and directories currently installed.) Preparing to unpack .../bash_4.3-11+deb8u2_amd64.deb ... Unpacking bash (4.3-11+deb8u2) over (4.3-11+deb8u1) ... Setting up bash (4.3-11+deb8u2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14513 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.12-2+deb8u2_amd64.deb ... Unpacking e2fslibs:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up e2fslibs:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14512 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.12-2+deb8u2_amd64.deb ... Unpacking e2fsprogs (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up e2fsprogs (1.42.12-2+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14511 files and directories currently installed.) Preparing to unpack .../perl-base_5.20.2-3+deb8u12_amd64.deb ... Unpacking perl-base (5.20.2-3+deb8u12) over (5.20.2-3+deb8u11) ... Setting up perl-base (5.20.2-3+deb8u12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14511 files and directories currently installed.) Preparing to unpack .../tar_1.27.1-2+deb8u2_amd64.deb ... Unpacking tar (1.27.1-2+deb8u2) over (1.27.1-2+deb8u1) ... Setting up tar (1.27.1-2+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14511 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-7+deb8u2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-7+deb8u2) over (1.0.6-7+b3) ... Setting up libbz2-1.0:amd64 (1.0.6-7+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14510 files and directories currently installed.) Preparing to unpack .../libquadmath0_4.9.2-10+deb8u2_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgomp1_4.9.2-10+deb8u2_amd64.deb ... Unpacking libgomp1:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgfortran3_4.9.2-10+deb8u2_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Preparing to unpack .../gcc-4.9-base_4.9.2-10+deb8u2_amd64.deb ... Unpacking gcc-4.9-base:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14510 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9.2-10+deb8u2_amd64.deb ... Unpacking libgcc1:amd64 (1:4.9.2-10+deb8u2) over (1:4.9.2-10+deb8u1) ... Setting up libgcc1:amd64 (1:4.9.2-10+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14510 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.2-10+deb8u2_amd64.deb ... Unpacking libstdc++6:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14510 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2+deb8u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-2+deb8u1) over (1:1.2.8.dfsg-2+b1) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-2+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14509 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.9.8.6_amd64.deb ... Unpacking libapt-pkg4.12:amd64 (1.0.9.8.6) over (1.0.9.8.4) ... Setting up libapt-pkg4.12:amd64 (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14509 files and directories currently installed.) Preparing to unpack .../apt_1.0.9.8.6_amd64.deb ... Unpacking apt (1.0.9.8.6) over (1.0.9.8.4) ... Setting up apt (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14509 files and directories currently installed.) Preparing to unpack .../libudev1_215-17+deb8u13_amd64.deb ... Unpacking libudev1:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libudev1:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14509 files and directories currently installed.) Preparing to unpack .../udev_215-17+deb8u13_amd64.deb ... Unpacking udev (215-17+deb8u13) over (215-17+deb8u7) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up udev (215-17+deb8u13) ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. A chroot environment has been detected, udev not started. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14509 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libcomerr2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14508 files and directories currently installed.) Preparing to unpack .../libss2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libss2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libss2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.3-2+deb8u8_amd64.deb ... Unpacking libgcrypt20:amd64 (1.6.3-2+deb8u8) over (1.6.3-2+deb8u4) ... Setting up libgcrypt20:amd64 (1.6.3-2+deb8u8) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../libsystemd0_215-17+deb8u13_amd64.deb ... Unpacking libsystemd0:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libsystemd0:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../systemd_215-17+deb8u13_amd64.deb ... Unpacking systemd (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd (215-17+deb8u13) ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u13_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd-sysv (215-17+deb8u13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u12_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u12) over (1.0.1t-1+deb8u8) ... Preparing to unpack .../libtasn1-6_4.2-3+deb8u4_amd64.deb ... Unpacking libtasn1-6:amd64 (4.2-3+deb8u4) over (4.2-3+deb8u3) ... Preparing to unpack .../libgnutls-deb0-28_3.3.30-0+deb8u1_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) over (3.3.8-6+deb8u7) ... Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-19+deb8u5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-19+deb8u5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-19+deb8u5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-19+deb8u5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libidn11_1.29-1+deb8u3_amd64.deb ... Unpacking libidn11:amd64 (1.29-1+deb8u3) over (1.29-1+deb8u2) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-13+deb8u2_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u2) over (2.1.26.dfsg1-13+deb8u1) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-13+deb8u2_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) over (2.1.26.dfsg1-13+deb8u1) ... Preparing to unpack .../libldap-2.4-2_2.4.40+dfsg-1+deb8u6_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) over (2.4.40+dfsg-1+deb8u4) ... Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u6_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) over (3.8.7.1-1+deb8u2) ... Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u8_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) over (2.9.1+dfsg1-5+deb8u6) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../libbsd0_0.7.0-2+deb8u1_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2+deb8u1) ... Preparing to unpack .../libssh2-1_1.4.3-4.1+deb8u6_amd64.deb ... Unpacking libssh2-1:amd64 (1.4.3-4.1+deb8u6) over (1.4.3-4.1+deb8u1) ... Preparing to unpack .../libcurl3_7.38.0-4+deb8u16_amd64.deb ... Unpacking libcurl3:amd64 (7.38.0-4+deb8u16) over (7.38.0-4+deb8u11) ... Preparing to unpack .../libexpat1_2.1.0-6+deb8u6_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u6) over (2.1.0-6+deb8u4) ... Preparing to unpack .../libfreetype6_2.5.2-3+deb8u4_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u4) over (2.5.2-3+deb8u2) ... Preparing to unpack .../libglib2.0-0_2.42.1-1+deb8u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.42.1-1+deb8u3) over (2.42.1-1+b1) ... Preparing to unpack .../libharfbuzz0b_0.9.35-2+deb8u1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (0.9.35-2+deb8u1) over (0.9.35-2) ... Preparing to unpack .../libice6_2%3a1.0.9-1+deb8u1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+deb8u1) over (2:1.0.9-1+b1) ... Preparing to unpack .../libpixman-1-0_0.32.6-3+deb8u1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.32.6-3+deb8u1) over (0.32.6-3) ... Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12+deb8u2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) over (1:1.3.1-12) ... Preparing to unpack .../libtiff5_4.0.3-12.3+deb8u10_amd64.deb ... Unpacking libtiff5:amd64 (4.0.3-12.3+deb8u10) over (4.0.3-12.3+deb8u5) ... Preparing to unpack .../libx11-data_2%3a1.6.2-3+deb8u2_all.deb ... Unpacking libx11-data (2:1.6.2-3+deb8u2) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libx11-6_2%3a1.6.2-3+deb8u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3+deb8u2) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+deb8u1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+deb8u1) over (1:1.1.1-1+b1) ... Preparing to unpack .../tzdata_2019c-0+deb8u1_all.deb ... Unpacking tzdata (2019c-0+deb8u1) over (2018e-0+deb8u1) ... Setting up tzdata (2019c-0+deb8u1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Sep 14 11:08:35 UTC 2022. Universal Time is now: Wed Sep 14 11:08:35 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14513 files and directories currently installed.) Preparing to unpack .../unzip_6.0-16+deb8u6_amd64.deb ... Unpacking unzip (6.0-16+deb8u6) over (6.0-16+deb8u3) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u2) ... Setting up libgomp1:amd64 (4.9.2-10+deb8u2) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u2) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u4) ... Setting up libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) ... Setting up libidn11:amd64 (1.29-1+deb8u3) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u2) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) ... Setting up libbsd0:amd64 (0.7.0-2+deb8u1) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u6) ... Setting up libcurl3:amd64 (7.38.0-4+deb8u16) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u6) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u4) ... Setting up libglib2.0-0:amd64 (2.42.1-1+deb8u3) ... No schema files found: doing nothing. Setting up libharfbuzz0b:amd64 (0.9.35-2+deb8u1) ... Setting up libice6:amd64 (2:1.0.9-1+deb8u1) ... Setting up libpixman-1-0:amd64 (0.32.6-3+deb8u1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Setting up libx11-data (2:1.6.2-3+deb8u2) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Setting up unzip (6.0-16+deb8u6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-yf', 'dist-upgrade'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m30.6s DUMP: ea587cb5da6f95fbc79bf1681671e909 - 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-cummerbund'] 0m30.6s DUMP: Package: r-bioc-cummerbund Version: 2.6.1-1 Installed-Size: 8091 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.1.1-1), r-cran-rsqlite, r-cran-reshape2, r-cran-ggplot2, r-cran-fastcluster, r-bioc-biocgenerics, r-bioc-rtracklayer, r-bioc-gviz Description-en: tool for analysis of Cufflinks RNA-Seq output Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations. Description-md5: b8e141232b6d17ca7806a2bfbcdae869 Homepage: http://compbio.mit.edu/cummeRbund/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-cummerbund/r-bioc-cummerbund_2.6.1-1_all.deb Size: 1850540 MD5sum: 38552382c8f003509b6e18f9323b6cae SHA1: 01e975bbbbfcd9c7c71bb186ab9551347648c76b SHA256: b93f3a05e03291da759df2d34c8ec0459ceca8eb10ad4ed5ff45b4e73aa5fe06 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-cummerbund'] 0m30.6s INFO: apt-cache knows about the following packages: r-bioc-cummerbund 0m30.6s INFO: Running scripts pre_install 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_database-server'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_database-server'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_exceptions'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_exceptions'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_extras'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_extras'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy'] 0m30.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 0m30.8s DUMP: r-bioc-cummerbund: Installed: 2.6.1-1 Candidate: 2.6.1-1 Version table: *** 2.6.1-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 0m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-y', 'install', 'r-bioc-cummerbund'] 0m31.0s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-cummerbund is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-y', 'install', 'r-bioc-cummerbund'] 0m31.0s INFO: Running scripts post_install 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_install_exceptions'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_install_exceptions'] 0m31.0s INFO: Running scripts post_distupgrade 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_exceptions'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_exceptions'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_zz_backports'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_distupgrade_zz_backports'] 0m31.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m32.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m32.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m32.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m32.7s INFO: Running scripts pre_install 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_database-server'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_database-server'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_exceptions'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_exceptions'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_extras'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_extras'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy'] 0m32.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 0m32.9s DUMP: r-bioc-cummerbund: Installed: 2.6.1-1 Candidate: 2.6.1-1 Version table: *** 2.6.1-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-y', 'install', 'r-bioc-cummerbund=2.6.1-1'] 0m33.2s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-cummerbund is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', '-y', 'install', 'r-bioc-cummerbund=2.6.1-1'] 0m33.2s INFO: Running scripts post_install 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_install_exceptions'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_install_exceptions'] 0m33.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m34.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m34.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', '-ac', '--ignore-obsolete'] 0m36.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', '-ac', '--ignore-obsolete'] 0m36.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m36.5s DUMP: 0.15.6 0m36.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m36.5s INFO: Running adequate version 0.15.6 now. 0m36.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'r-bioc-cummerbund'] 0m36.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'r-bioc-cummerbund'] 0m36.6s INFO: Running scripts pre_remove 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_exceptions'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/pre_remove_exceptions'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m40.3s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.6 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+deb8u2 install ok installed e2fsprogs e2fsprogs 1.42.12-2+deb8u2 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u2 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.6 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblas-common libblas-common 1.2.20110419-10 install ok installed libblas3 libblas3 1.2.20110419-10 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd0:amd64 libbsd0 0.7.0-2+deb8u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+deb8u2 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcairo2:amd64 libcairo2 1.14.0-2.1+deb8u2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+deb8u2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libcurl3:amd64 libcurl3 7.38.0-4+deb8u16 install ok installed libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u6 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u4 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u2 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u8 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u2 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.42.1-1+deb8u3 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.30-0+deb8u1 install ok installed libgomp1:amd64 libgomp1 4.9.2-10+deb8u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1~deb8u1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 0.9.35-2+deb8u1 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libice6:amd64 libice6 2:1.0.9-1+deb8u1 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12+deb8u2 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u5 install ok installed liblapack3 liblapack3 3.5.0-4 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u6 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu4 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu4 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3+deb8u1 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u2 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed librtmp1:amd64 librtmp1 2.4+20150115.gita107cef-1+deb8u1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u2 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u6 install ok installed libss2:amd64 libss2 1.42.12-2+deb8u2 install ok installed libssh2-1:amd64 libssh2-1 1.4.3-4.1+deb8u6 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u12 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u13 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u4 install ok installed libtcl8.5:amd64 libtcl8.5 8.5.17-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u10 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtk8.5:amd64 libtk8.5 8.5.17-1 install ok installed libudev1:amd64 libudev1 215-17+deb8u13 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u2 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+deb8u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u8 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed littler littler 0.2.1-1 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u12 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed r-base-core r-base-core 3.1.1-1+deb8u1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.26.1-1 install ok installed r-bioc-biobase r-bioc-biobase 2.24.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.10.0-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 0.6.1-1 install ok installed r-bioc-biomart r-bioc-biomart 2.20.0-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.32.1-1 install ok installed r-bioc-biovizbase r-bioc-biovizbase 1.12.3-1 install ok installed r-bioc-bsgenome r-bioc-bsgenome 1.32.0-1 install ok installed r-bioc-cummerbund r-bioc-cummerbund 2.6.1-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.0.2-2 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.0.6-1 install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.16.3-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.16.4-2 install ok installed r-bioc-gviz r-bioc-gviz 1.8.4-1 install ok installed r-bioc-iranges r-bioc-iranges 1.22.10-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 1.16.1-2 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.24.2-1 install ok installed r-bioc-variantannotation r-bioc-variantannotation 1.10.5-1 install ok installed r-bioc-xvector r-bioc-xvector 0.4.0-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-2-1 install ok installed r-cran-batchjobs r-cran-batchjobs 1.4-1 install ok installed r-cran-bbmisc r-cran-bbmisc 1.7-1 install ok installed r-cran-bitops r-cran-bitops 1.0-6-1 install ok installed r-cran-brew r-cran-brew 1.0-6-1 install ok installed r-cran-checkmate r-cran-checkmate 1.5.0-1 install ok installed r-cran-chron r-cran-chron 2.3-45-1 install ok installed r-cran-cluster r-cran-cluster 1.15.3-1 install ok installed r-cran-codetools r-cran-codetools 0.2-9-1 install ok installed r-cran-colorspace r-cran-colorspace 1.2-4-1 install ok installed r-cran-dbi r-cran-dbi 0.3.1-1 install ok installed r-cran-dichromat r-cran-dichromat 2.0.0-3 install ok installed r-cran-digest r-cran-digest 0.6.4-1 install ok installed r-cran-fail r-cran-fail 1.2-1 install ok installed r-cran-fastcluster r-cran-fastcluster 1.1.13-1 install ok installed r-cran-foreach r-cran-foreach 1.4.2-1 install ok installed r-cran-foreign r-cran-foreign 0.8.61-1 install ok installed r-cran-formula r-cran-formula 1.1-2-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 1.0.0-1 install ok installed r-cran-gtable r-cran-gtable 0.1.2-1.1 install ok installed r-cran-hmisc r-cran-hmisc 3.14-5-1 install ok installed r-cran-iterators r-cran-iterators 1.0.7-1 install ok installed r-cran-labeling r-cran-labeling 0.3-1 install ok installed r-cran-lattice r-cran-lattice 0.20-29-1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-26-1 install ok installed r-cran-mass r-cran-mass 7.3-34-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.10.3-1 install ok installed r-cran-munsell r-cran-munsell 0.4.2-1 install ok installed r-cran-nnet r-cran-nnet 7.3-8-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.2-1 install ok installed r-cran-plyr r-cran-plyr 1.8.1-2 install ok installed r-cran-proto r-cran-proto 0.3-10-1 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.6.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.0-5-2 install ok installed r-cran-rcpp r-cran-rcpp 0.11.3-1 install ok installed r-cran-rcurl r-cran-rcurl 1.95-4.3-1+deb8u1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4-1 install ok installed r-cran-rpart r-cran-rpart 4.1-8-1 install ok installed r-cran-rsqlite r-cran-rsqlite 0.11.4-3 install ok installed r-cran-scales r-cran-scales 0.2.4-1 install ok installed r-cran-sendmailr r-cran-sendmailr 1.2-1-1 install ok installed r-cran-stringr r-cran-stringr 0.6.2-2 install ok installed r-cran-survival r-cran-survival 2.37-7-1 install ok installed r-cran-xml r-cran-xml 3.98-1.1-1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u13 install ok installed systemd-sysv systemd-sysv 215-17+deb8u13 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u2 install ok installed tzdata tzdata 2019c-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u13 install ok installed unzip unzip 6.0-16+deb8u6 install ok installed util-linux util-linux 2.25.2-6 install ok installed x11-common x11-common 1:7.7+7 install ok installed xdg-utils xdg-utils 1.1.0~rc1+git20111210-7.4+deb8u1 install ok installed zip zip 3.0-8 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+deb8u1 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', 'remove', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libice6:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libquadmath0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-fail', 'r-cran-fastcluster', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-ggplot2', 'r-cran-gtable', 'r-cran-hmisc', 'r-cran-iterators', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-mass', 'r-cran-matrixstats', 'r-cran-munsell', 'r-cran-nnet', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proto', 'r-cran-r.methodss3', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-stringr', 'r-cran-survival', 'r-cran-xml', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-cummerbund'] 0m41.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libbsd0 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2 libice6 libidn11 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libnettle4 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng12-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libtcl8.5 libthai-data libthai0 libtiff5 libtk8.5 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler r-base-core r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-variantannotation r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-chron r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-fail r-cran-fastcluster r-cran-foreach r-cran-foreign r-cran-formula r-cran-ggplot2 r-cran-gtable r-cran-hmisc r-cran-iterators r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-mass r-cran-matrixstats r-cran-munsell r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-proto r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-stringr r-cran-survival r-cran-xml unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 137 to remove and 0 not upgraded. After this operation, 182 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14513 files and directories currently installed.) Removing r-bioc-cummerbund (2.6.1-1) ... Removing r-bioc-gviz (1.8.4-1) ... Removing r-bioc-biovizbase (1.12.3-1) ... Removing r-cran-hmisc (3.14-5-1) ... Removing r-cran-rpart (4.1-8-1) ... Removing r-cran-survival (2.37-7-1) ... Removing r-cran-ggplot2 (1.0.0-1) ... Removing r-cran-reshape2 (1.4-1) ... Removing r-bioc-variantannotation (1.10.5-1) ... Removing r-bioc-genomicfeatures (1.16.3-1) ... Removing r-bioc-rtracklayer (1.24.2-1) ... Removing r-bioc-biomart (2.20.0-1) ... Removing r-cran-rcurl (1.95-4.3-1+deb8u1) ... Removing libcurl3:amd64 (7.38.0-4+deb8u16) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) ... Removing r-cran-cluster (1.15.3-1) ... Removing librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Removing r-bioc-genomicalignments (1.0.6-1) ... Removing r-bioc-bsgenome (1.32.0-1) ... Removing r-bioc-rsamtools (1.16.1-2) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libidn11:amd64 (1.29-1+deb8u3) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u2) ... Removing r-bioc-biocparallel (0.6.1-1) ... Removing r-cran-batchjobs (1.4-1) ... Removing r-bioc-annotationdbi (1.26.1-1) ... Removing r-cran-rsqlite (0.11.4-3) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Removing libssh2-1:amd64 (1.4.3-4.1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing r-cran-xml (3.98-1.1-1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) ... Removing r-bioc-biobase (2.24.0-1) ... Removing r-bioc-genomicranges (1.16.4-2) ... Removing r-bioc-biostrings (2.32.1-1) ... Removing r-bioc-xvector (0.4.0-1) ... Removing r-bioc-iranges (1.22.10-1) ... Removing r-bioc-biocgenerics (0.10.0-1) ... Removing r-bioc-genomeinfodb (1.0.2-2) ... Removing r-cran-sendmailr (1.2-1-1) ... Removing r-cran-base64enc (0.1-2-1) ... Removing r-cran-fail (1.2-1) ... Removing r-cran-bbmisc (1.7-1) ... Removing r-cran-bitops (1.0-6-1) ... Removing r-cran-brew (1.0-6-1) ... Removing r-cran-checkmate (1.5.0-1) ... Removing r-cran-chron (2.3-45-1) ... Removing r-cran-foreach (1.4.2-1) ... Removing r-cran-codetools (0.2-9-1) ... Removing r-cran-scales (0.2.4-1) ... Removing r-cran-munsell (0.4.2-1) ... Removing r-cran-colorspace (1.2-4-1) ... Removing r-cran-dbi (0.3.1-1) ... Removing r-cran-dichromat (2.0.0-3) ... Removing r-cran-digest (0.6.4-1) ... Removing r-cran-fastcluster (1.1.13-1) ... Removing r-cran-foreign (0.8.61-1) ... Removing r-cran-formula (1.1-2-1) ... Removing r-cran-gtable (0.1.2-1.1) ... Removing r-cran-iterators (1.0.7-1) ... Removing r-cran-labeling (0.3-1) ... Removing r-cran-latticeextra (0.6-26-1) ... Removing r-cran-lattice (0.20-29-1) ... Removing r-cran-mass (7.3-34-1) ... Removing r-cran-matrixstats (0.10.3-1) ... Removing r-cran-nnet (7.3-8-1) ... Removing r-cran-plyr (1.8.1-2) ... Removing r-cran-proto (0.3-10-1) ... Removing r-cran-r.methodss3 (1.6.1-1) ... Removing r-cran-rcolorbrewer (1.0-5-2) ... Removing r-cran-stringr (0.6.2-2) ... Removing r-cran-rcpp (0.11.3-1) ... Removing littler (0.2.1-1) ... Removing libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libtasn1-6:amd64 (4.2-3+deb8u4) ... Removing r-cran-pkgkitten (0.1.2-1) ... Removing r-base-core (3.1.1-1+deb8u1) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing libtk8.5:amd64 (8.5.17-1) ... Removing libxft2:amd64 (2.3.2-1) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Removing liblapack3 (3.5.0-4) ... Removing libblas3 (1.2.20110419-10) ... Removing libblas-common (1.2.20110419-10) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libice6:amd64 (2:1.0.9-1+deb8u1) ... Removing libbsd0:amd64 (0.7.0-2+deb8u1) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libharfbuzz0b:amd64 (0.9.35-2+deb8u1) ... Removing libglib2.0-0:amd64 (2.42.1-1+deb8u3) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgomp1:amd64 (4.9.2-10+deb8u2) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Removing libpaper-utils (1.1.24+nmu4) ... Removing libpaper1:amd64 (1.1.24+nmu4) ... Removing libpixman-1-0:amd64 (0.32.6-3+deb8u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libtcl8.5:amd64 (8.5.17-1) ... Removing libthai-data (0.1.21-1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing unzip (6.0-16+deb8u6) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Removing zip (3.0-8) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Removing libx11-data (2:1.6.2-3+deb8u2) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', 'remove', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libice6:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libquadmath0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-fail', 'r-cran-fastcluster', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-ggplot2', 'r-cran-gtable', 'r-cran-hmisc', 'r-cran-iterators', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-mass', 'r-cran-matrixstats', 'r-cran-munsell', 'r-cran-nnet', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proto', 'r-cran-r.methodss3', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-stringr', 'r-cran-survival', 'r-cran-xml', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-cummerbund'] 0m41.7s INFO: Running scripts post_remove 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_remove_exceptions'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_remove_exceptions'] 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg', '--purge', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libice6:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libquadmath0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-fail', 'r-cran-fastcluster', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-ggplot2', 'r-cran-gtable', 'r-cran-hmisc', 'r-cran-iterators', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-mass', 'r-cran-matrixstats', 'r-cran-munsell', 'r-cran-nnet', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proto', 'r-cran-r.methodss3', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-stringr', 'r-cran-survival', 'r-cran-xml', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 0m43.4s DUMP: (Reading database ... 7519 files and directories currently installed.) Removing fontconfig (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed Removing libbsd0:amd64 (0.7.0-2+deb8u1) ... Purging configuration files for libbsd0:amd64 (0.7.0-2+deb8u1) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Purging configuration files for libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcurl3:amd64 (7.38.0-4+deb8u16) ... Purging configuration files for libcurl3:amd64 (7.38.0-4+deb8u16) ... Removing libdatrie1:amd64 (0.2.8-1) ... Purging configuration files for libdatrie1:amd64 (0.2.8-1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libglib2.0-0:amd64 (2.42.1-1+deb8u3) ... Purging configuration files for libglib2.0-0:amd64 (2.42.1-1+deb8u3) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Purging configuration files for libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) ... Removing libgomp1:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libgomp1:amd64 (4.9.2-10+deb8u2) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Purging configuration files for libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libharfbuzz0b:amd64 (0.9.35-2+deb8u1) ... Purging configuration files for libharfbuzz0b:amd64 (0.9.35-2+deb8u1) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libice6:amd64 (2:1.0.9-1+deb8u1) ... Purging configuration files for libice6:amd64 (2:1.0.9-1+deb8u1) ... Removing libidn11:amd64 (1.29-1+deb8u3) ... Purging configuration files for libidn11:amd64 (1.29-1+deb8u3) ... Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Purging configuration files for libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) ... Purging configuration files for libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Purging configuration files for libkeyutils1:amd64 (1.5.9-5+b1) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) ... Purging configuration files for libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) ... Purging configuration files for libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) ... Purging configuration files for libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Purging configuration files for libp11-kit0:amd64 (0.20.7-1) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpango-1.0-0:amd64 (1.36.8-3) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangoft2-1.0-0:amd64 (1.36.8-3) ... dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Removing libpaper1:amd64 (1.1.24+nmu4) ... Purging configuration files for libpaper1:amd64 (1.1.24+nmu4) ... Removing libpixman-1-0:amd64 (0.32.6-3+deb8u1) ... Purging configuration files for libpixman-1-0:amd64 (0.32.6-3+deb8u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Purging configuration files for librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) ... Purging configuration files for libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Removing libsm6:amd64 (2:1.2.2-1+b1) ... Purging configuration files for libsm6:amd64 (2:1.2.2-1+b1) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u6) ... Removing libssh2-1:amd64 (1.4.3-4.1+deb8u6) ... Purging configuration files for libssh2-1:amd64 (1.4.3-4.1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing libtasn1-6:amd64 (4.2-3+deb8u4) ... Purging configuration files for libtasn1-6:amd64 (4.2-3+deb8u4) ... Removing libtcl8.5:amd64 (8.5.17-1) ... Purging configuration files for libtcl8.5:amd64 (8.5.17-1) ... dpkg: warning: ignoring request to remove libthai-data which isn't installed Removing libthai0:amd64 (0.1.21-1) ... Purging configuration files for libthai0:amd64 (0.1.21-1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Purging configuration files for libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Removing libtk8.5:amd64 (8.5.17-1) ... Purging configuration files for libtk8.5:amd64 (8.5.17-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-render0:amd64 (1.10-3+b1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Purging configuration files for libxext6:amd64 (2:1.3.3-1) ... Removing libxft2:amd64 (2.3.2-1) ... Purging configuration files for libxft2:amd64 (2.3.2-1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) ... Purging configuration files for libxml2:amd64 (2.9.1+dfsg1-5+deb8u8) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Purging configuration files for libxss1:amd64 (1:1.2.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Purging configuration files for libxt6:amd64 (1:1.1.4-1+b1) ... dpkg: warning: ignoring request to remove littler which isn't installed Removing r-base-core (3.1.1-1+deb8u1) ... Purging configuration files for r-base-core (3.1.1-1+deb8u1) ... dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biomart which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-biovizbase which isn't installed dpkg: warning: ignoring request to remove r-bioc-bsgenome which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicfeatures which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-gviz which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-variantannotation which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-batchjobs which isn't installed dpkg: warning: ignoring request to remove r-cran-bbmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-brew which isn't installed dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove r-cran-chron which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-dichromat which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-fail which isn't installed dpkg: warning: ignoring request to remove r-cran-fastcluster which isn't installed dpkg: warning: ignoring request to remove r-cran-foreach which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-formula which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-hmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-proto which isn't installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcurl which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-sendmailr which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed Removing unzip (6.0-16+deb8u6) ... Purging configuration files for unzip (6.0-16+deb8u6) ... Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 0m43.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg', '--purge', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libice6:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libquadmath0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-fail', 'r-cran-fastcluster', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-ggplot2', 'r-cran-gtable', 'r-cran-hmisc', 'r-cran-iterators', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-mass', 'r-cran-matrixstats', 'r-cran-munsell', 'r-cran-nnet', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proto', 'r-cran-r.methodss3', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-stringr', 'r-cran-survival', 'r-cran-xml', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 0m43.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg', '--purge', 'r-bioc-cummerbund'] 0m43.4s DUMP: dpkg: warning: ignoring request to remove r-bioc-cummerbund which isn't installed 0m43.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg', '--purge', 'r-bioc-cummerbund'] 0m43.4s INFO: Running scripts post_purge 0m43.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_purge_exceptions'] 0m43.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_purge_exceptions'] 0m43.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg', '--purge', '--pending'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg', '--purge', '--pending'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg', '--remove', '--pending'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg', '--remove', '--pending'] 0m43.5s INFO: Running scripts post_test 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_test_exceptions'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'tmp/scripts/post_test_exceptions'] 0m43.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m43.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg-divert', '--list'] 0m43.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m43.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'dpkg-divert', '--list'] 0m43.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', 'clean'] 0m43.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz1i79tss', 'apt-get', 'clean'] 0m43.9s DEBUG: Recording chroot state 0m44.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/shm'] 0m44.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/shm'] 0m44.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/console'] 0m44.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/console'] 0m44.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/ptmx'] 0m44.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/ptmx'] 0m44.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/pts'] 0m44.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/dev/pts'] 0m44.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/proc'] 0m44.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz1i79tss/proc'] 0m44.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m44.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz1i79tss'] 0m44.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpz1i79tss 0m44.9s INFO: PASS: Upgrading between Debian distributions. 0m44.9s INFO: PASS: All tests. 0m44.9s INFO: piuparts run ends. ret=0 End: 2022-09-14 11:08:50 GMT