Start: 2022-11-19 19:58:54 GMT [jessie] Package: r-cran-haplo.stats Version: 1.6.11-1 Installed-Size: 1254 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), r-base-core (>= 3.1.1-1) Description: GNU R package for haplotype analysis Homepage: http://cran.r-project.org/web/packages/haplo.stats Description-md5: 0667f477cd725a6f574085cfa7efa687 Tag: devel::lang:r, field::biology, field::biology:bioinformatics, implemented-in::r, use::analysing Section: gnu-r Priority: optional Filename: pool/main/r/r-cran-haplo.stats/r-cran-haplo.stats_1.6.11-1_amd64.deb Size: 1132914 MD5sum: 832a48aef6014f693d76d9f0ef6fa847 SHA1: 50c417e48876d423f5e7cf241f239aeb36661418 SHA256: 19a4831c6c5bf78459aee4edddb9483ce949582e202168903f1601e9b5f53ebd [jessie-lts] Package: r-cran-haplo.stats Version: 1.6.11-1 Installed-Size: 1254 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), r-base-core (>= 3.1.1-1) Description: GNU R package for haplotype analysis Homepage: http://cran.r-project.org/web/packages/haplo.stats Description-md5: 0667f477cd725a6f574085cfa7efa687 Tag: devel::lang:r, field::biology, field::biology:bioinformatics, implemented-in::r, use::analysing Section: gnu-r Priority: optional Filename: pool/main/r/r-cran-haplo.stats/r-cran-haplo.stats_1.6.11-1_amd64.deb Size: 1132914 MD5sum: 832a48aef6014f693d76d9f0ef6fa847 SHA1: 50c417e48876d423f5e7cf241f239aeb36661418 SHA256: 19a4831c6c5bf78459aee4edddb9483ce949582e202168903f1601e9b5f53ebd Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt r-cran-haplo.stats=1.6.11-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt r-cran-haplo.stats=1.6.11-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmps4rr4zz1 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmps4rr4zz1 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmps4rr4zz1/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmps4rr4zz1/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', 'update'] 0m3.1s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s INFO: Running scripts post_setup 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.7s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (3741 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_minimize'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_minimize'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_zz_backports'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_setup_zz_backports'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat 0m4.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m5.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m5.1s INFO: Running scripts is_testable 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/is_testable_uninstallable'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/is_testable_uninstallable'] 0m5.1s INFO: Running scripts pre_test 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_test_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_test_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_test_root_password'] 0m5.1s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_test_root_password'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'show', '--no-all-versions', 'r-cran-haplo.stats'] 0m5.1s DUMP: Package: r-cran-haplo.stats Version: 1.6.11-1 Installed-Size: 1254 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), r-base-core (>= 3.1.1-1) Description-en: GNU R package for haplotype analysis The package provides routines for the GNU R statistics environment for statistical Analysis of indirectly measured Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em, haplo.glm, haplo.score, haplo.power, and seqhap. Description-md5: 0667f477cd725a6f574085cfa7efa687 Homepage: http://cran.r-project.org/web/packages/haplo.stats Tag: devel::lang:r, field::biology, field::biology:bioinformatics, implemented-in::r, use::analysing Section: gnu-r Priority: optional Filename: pool/main/r/r-cran-haplo.stats/r-cran-haplo.stats_1.6.11-1_amd64.deb Size: 1132914 MD5sum: 832a48aef6014f693d76d9f0ef6fa847 SHA1: 50c417e48876d423f5e7cf241f239aeb36661418 SHA256: 19a4831c6c5bf78459aee4edddb9483ce949582e202168903f1601e9b5f53ebd 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'show', '--no-all-versions', 'r-cran-haplo.stats'] 0m5.2s INFO: apt-cache knows about the following packages: r-cran-haplo.stats 0m5.2s INFO: Running scripts pre_install 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy'] 0m5.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy', 'r-cran-haplo.stats'] 0m5.3s DUMP: r-cran-haplo.stats: Installed: (none) Candidate: 1.6.11-1 Version table: 1.6.11-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy', 'r-cran-haplo.stats'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-y', 'install', 'r-cran-haplo.stats'] 0m13.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libcairo2 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg62-turbo liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng12-0 libquadmath0 libsm6 libtcl8.5 libthai-data libthai0 libtiff5 libtk8.5 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core unzip x11-common xdg-utils zip Suggested packages: tcl8.5 tk8.5 ess r-doc-info r-doc-pdf r-mathlib r-base-html gvfs-bin Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libcairo2 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg62-turbo liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng12-0 libquadmath0 libsm6 libtcl8.5 libthai-data libthai0 libtiff5 libtk8.5 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core r-cran-haplo.stats unzip x11-common xdg-utils zip 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After this operation, 72.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:2 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:3 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:4 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:5 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:6 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:7 http://deb.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:8 http://deb.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:9 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:10 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:11 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:12 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:13 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:14 http://deb.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:15 http://deb.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:16 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:17 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:18 http://deb.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:19 http://deb.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:20 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:21 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:22 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:23 http://deb.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:24 http://deb.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:25 http://deb.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:26 http://deb.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:27 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:28 http://deb.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:29 http://deb.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:30 http://deb.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:31 http://deb.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:32 http://deb.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:33 http://deb.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:34 http://deb.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:35 http://deb.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:36 http://deb.debian.org/debian/ jessie/main libtcl8.5 amd64 8.5.17-1 [737 kB] Get:37 http://deb.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:38 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:39 http://deb.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:40 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:41 http://deb.debian.org/debian/ jessie/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:42 http://deb.debian.org/debian/ jessie/main libtk8.5 amd64 8.5.17-1 [749 kB] Get:43 http://deb.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:44 http://deb.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:45 http://deb.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:46 http://deb.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:47 http://deb.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:48 http://deb.debian.org/debian/ jessie/main zip amd64 3.0-8 [228 kB] Get:49 http://deb.debian.org/debian/ jessie/main unzip amd64 6.0-16+deb8u3 [162 kB] Get:50 http://deb.debian.org/debian/ jessie/main xdg-utils all 1.1.0~rc1+git20111210-7.4+deb8u1 [65.1 kB] Get:51 http://deb.debian.org/debian/ jessie/main r-base-core amd64 3.1.1-1+deb8u1 [19.9 MB] Get:52 http://deb.debian.org/debian/ jessie/main r-cran-haplo.stats amd64 1.6.11-1 [1133 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.5 MB in 0s (41.2 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) ... Selecting previously unselected package libpng12-0:amd64. Preparing to unpack .../libpng12-0_1.2.50-2+deb8u3_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.50-2+deb8u3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.5.2-3+deb8u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.34-1_all.deb ... Unpacking fonts-dejavu-core (2.34-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.0-6.3+deb8u1_all.deb ... Unpacking fontconfig-config (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../fontconfig_2.11.0-6.3+deb8u1_amd64.deb ... Unpacking fontconfig (2.11.0-6.3+deb8u1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../libpixman-1-0_0.32.6-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.32.6-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-3+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.10-3+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-3+deb8u1_all.deb ... Unpacking libx11-data (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.2-3+deb8u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../libxcb-render0_1.10-3+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../libxcb-shm0_1.10-3+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.10-3+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../libxrender1_1%3a0.9.8-1+b1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.8-1+b1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../libcairo2_1.14.0-2.1+deb8u2_amd64.deb ... Unpacking libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../libdatrie1_0.2.8-1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.8-1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+deb8u1_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+deb8u1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_4.9.2-10+deb8u1_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.42.1-1+b1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.42.1-1+b1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgomp1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../libgraphite2-3_1.3.10-1~deb8u1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../libharfbuzz0b_0.9.35-2_amd64.deb ... Unpacking libharfbuzz0b:amd64 (0.9.35-2) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+7_all.deb ... Unpacking x11-common (1:7.7+7) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../libice6_2%3a1.0.9-1+b1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+b1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../libthai-data_0.1.21-1_all.deb ... Unpacking libthai-data (0.1.21-1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../libthai0_0.1.21-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.21-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../libpango-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../libpangoft2-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../libpangocairo-1.0-0_1.36.8-3_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.36.8-3) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../libpaper1_1.1.24+nmu4_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libtcl8.5:amd64. Preparing to unpack .../libtcl8.5_8.5.17-1_amd64.deb ... Unpacking libtcl8.5:amd64 (8.5.17-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.3.1-12) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../libtiff5_4.0.3-12.3+deb8u5_amd64.deb ... Unpacking libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../libxft2_2.3.2-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../libxss1_1%3a1.2.2-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.2-1) ... Selecting previously unselected package libtk8.5:amd64. Preparing to unpack .../libtk8.5_8.5.17-1_amd64.deb ... Unpacking libtk8.5:amd64 (8.5.17-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.4-1+b1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.4-1+b1) ... Selecting previously unselected package libblas-common. Preparing to unpack .../libblas-common_1.2.20110419-10_amd64.deb ... Unpacking libblas-common (1.2.20110419-10) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-10_amd64.deb ... Unpacking libblas3 (1.2.20110419-10) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-4_amd64.deb ... Unpacking liblapack3 (3.5.0-4) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../libpaper-utils_1.1.24+nmu4_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4) ... Selecting previously unselected package zip. Preparing to unpack .../archives/zip_3.0-8_amd64.deb ... Unpacking zip (3.0-8) ... Selecting previously unselected package unzip. Preparing to unpack .../unzip_6.0-16+deb8u3_amd64.deb ... Unpacking unzip (6.0-16+deb8u3) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../xdg-utils_1.1.0~rc1+git20111210-7.4+deb8u1_all.deb ... Unpacking xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../r-base-core_3.1.1-1+deb8u1_amd64.deb ... Unpacking r-base-core (3.1.1-1+deb8u1) ... Selecting previously unselected package r-cran-haplo.stats. Preparing to unpack .../r-cran-haplo.stats_1.6.11-1_amd64.deb ... Unpacking r-cran-haplo.stats (1.6.11-1) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libthai-data (0.1.21-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libtcl8.5:amd64 (8.5.17-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.5:amd64 (8.5.17-1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpaper-utils (1.1.24+nmu4) ... Setting up zip (3.0-8) ... Setting up unzip (6.0-16+deb8u3) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Setting up r-base-core (3.1.1-1+deb8u1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-haplo.stats (1.6.11-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-y', 'install', 'r-cran-haplo.stats'] 0m13.1s INFO: Running scripts post_install 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_install_exceptions'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_install_exceptions'] 0m13.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m13.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m13.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmps4rr4zz1 to jessie-lts 0m13.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main deb http://security.debian.org jessie/updates main 0m13.8s INFO: Running scripts pre_distupgrade 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', 'update'] 0m16.5s DUMP: Get:1 http://security.debian.org jessie/updates InRelease [44.9 kB] Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Get:2 http://security.debian.org jessie/updates/main amd64 Packages [781 kB] Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Get:3 http://security.debian.org jessie/updates/main Translation-en [401 kB] Fetched 1227 kB in 1s (907 kB/s) Reading package lists... 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', 'update'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-yf', 'dist-upgrade'] 0m21.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libbsd0 The following packages will be upgraded: apt bash e2fslibs e2fsprogs gcc-4.9-base libapt-pkg4.12 libbz2-1.0 libcomerr2 libexpat1 libfreetype6 libgcc1 libgcrypt20 libgfortran3 libglib2.0-0 libgomp1 libharfbuzz0b libice6 libjpeg62-turbo libpixman-1-0 libquadmath0 libss2 libstdc++6 libsystemd0 libtiff5 libudev1 libx11-6 libx11-data libxdmcp6 perl-base systemd systemd-sysv tar tzdata udev unzip zlib1g 36 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 16.8 MB of archives. After this operation, 4182 kB of additional disk space will be used. Get:1 http://security.debian.org/ jessie/updates/main bash amd64 4.3-11+deb8u2 [1173 kB] Get:2 http://security.debian.org/ jessie/updates/main e2fslibs amd64 1.42.12-2+deb8u2 [186 kB] Get:3 http://security.debian.org/ jessie/updates/main e2fsprogs amd64 1.42.12-2+deb8u2 [751 kB] Get:4 http://security.debian.org/ jessie/updates/main perl-base amd64 5.20.2-3+deb8u12 [1231 kB] Get:5 http://security.debian.org/ jessie/updates/main tar amd64 1.27.1-2+deb8u2 [676 kB] Get:6 http://security.debian.org/ jessie/updates/main libbz2-1.0 amd64 1.0.6-7+deb8u2 [43.3 kB] Get:7 http://security.debian.org/ jessie/updates/main libquadmath0 amd64 4.9.2-10+deb8u2 [129 kB] Get:8 http://security.debian.org/ jessie/updates/main libgomp1 amd64 4.9.2-10+deb8u2 [37.8 kB] Get:9 http://security.debian.org/ jessie/updates/main libgfortran3 amd64 4.9.2-10+deb8u2 [254 kB] Get:10 http://security.debian.org/ jessie/updates/main gcc-4.9-base amd64 4.9.2-10+deb8u2 [160 kB] Get:11 http://security.debian.org/ jessie/updates/main libgcc1 amd64 1:4.9.2-10+deb8u2 [39.4 kB] Get:12 http://security.debian.org/ jessie/updates/main libstdc++6 amd64 4.9.2-10+deb8u2 [273 kB] Get:13 http://security.debian.org/ jessie/updates/main zlib1g amd64 1:1.2.8.dfsg-2+deb8u1 [88.3 kB] Get:14 http://security.debian.org/ jessie/updates/main libapt-pkg4.12 amd64 1.0.9.8.6 [794 kB] Get:15 http://security.debian.org/ jessie/updates/main apt amd64 1.0.9.8.6 [1109 kB] Get:16 http://security.debian.org/ jessie/updates/main libudev1 amd64 215-17+deb8u13 [58.8 kB] Get:17 http://security.debian.org/ jessie/updates/main udev amd64 215-17+deb8u13 [878 kB] Get:18 http://security.debian.org/ jessie/updates/main libcomerr2 amd64 1.42.12-2+deb8u2 [60.6 kB] Get:19 http://security.debian.org/ jessie/updates/main libss2 amd64 1.42.12-2+deb8u2 [64.9 kB] Get:20 http://security.debian.org/ jessie/updates/main libgcrypt20 amd64 1.6.3-2+deb8u8 [394 kB] Get:21 http://security.debian.org/ jessie/updates/main libsystemd0 amd64 215-17+deb8u13 [90.5 kB] Get:22 http://security.debian.org/ jessie/updates/main systemd amd64 215-17+deb8u13 [2555 kB] Get:23 http://security.debian.org/ jessie/updates/main systemd-sysv amd64 215-17+deb8u13 [37.5 kB] Get:24 http://security.debian.org/ jessie/updates/main libbsd0 amd64 0.7.0-2+deb8u1 [68.2 kB] Get:25 http://security.debian.org/ jessie/updates/main libexpat1 amd64 2.1.0-6+deb8u6 [80.3 kB] Get:26 http://security.debian.org/ jessie/updates/main libfreetype6 amd64 2.5.2-3+deb8u4 [467 kB] Get:27 http://security.debian.org/ jessie/updates/main libglib2.0-0 amd64 2.42.1-1+deb8u3 [2400 kB] Get:28 http://security.debian.org/ jessie/updates/main libharfbuzz0b amd64 0.9.35-2+deb8u1 [486 kB] Get:29 http://security.debian.org/ jessie/updates/main libice6 amd64 2:1.0.9-1+deb8u1 [58.8 kB] Get:30 http://security.debian.org/ jessie/updates/main libpixman-1-0 amd64 0.32.6-3+deb8u1 [506 kB] Get:31 http://security.debian.org/ jessie/updates/main libjpeg62-turbo amd64 1:1.3.1-12+deb8u2 [117 kB] Get:32 http://security.debian.org/ jessie/updates/main libtiff5 amd64 4.0.3-12.3+deb8u10 [223 kB] Get:33 http://security.debian.org/ jessie/updates/main libx11-data all 2:1.6.2-3+deb8u2 [126 kB] Get:34 http://security.debian.org/ jessie/updates/main libx11-6 amd64 2:1.6.2-3+deb8u2 [729 kB] Get:35 http://security.debian.org/ jessie/updates/main libxdmcp6 amd64 1:1.1.1-1+deb8u1 [24.7 kB] Get:36 http://security.debian.org/ jessie/updates/main tzdata all 2019c-0+deb8u1 [234 kB] Get:37 http://security.debian.org/ jessie/updates/main unzip amd64 6.0-16+deb8u6 [164 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.8 MB in 0s (35.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9755 files and directories currently installed.) Preparing to unpack .../bash_4.3-11+deb8u2_amd64.deb ... Unpacking bash (4.3-11+deb8u2) over (4.3-11+deb8u1) ... Setting up bash (4.3-11+deb8u2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9755 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.12-2+deb8u2_amd64.deb ... Unpacking e2fslibs:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up e2fslibs:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9754 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.12-2+deb8u2_amd64.deb ... Unpacking e2fsprogs (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up e2fsprogs (1.42.12-2+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9753 files and directories currently installed.) Preparing to unpack .../perl-base_5.20.2-3+deb8u12_amd64.deb ... Unpacking perl-base (5.20.2-3+deb8u12) over (5.20.2-3+deb8u11) ... Setting up perl-base (5.20.2-3+deb8u12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9753 files and directories currently installed.) Preparing to unpack .../tar_1.27.1-2+deb8u2_amd64.deb ... Unpacking tar (1.27.1-2+deb8u2) over (1.27.1-2+deb8u1) ... Setting up tar (1.27.1-2+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9753 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-7+deb8u2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-7+deb8u2) over (1.0.6-7+b3) ... Setting up libbz2-1.0:amd64 (1.0.6-7+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9752 files and directories currently installed.) Preparing to unpack .../libquadmath0_4.9.2-10+deb8u2_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgomp1_4.9.2-10+deb8u2_amd64.deb ... Unpacking libgomp1:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Preparing to unpack .../libgfortran3_4.9.2-10+deb8u2_amd64.deb ... Unpacking libgfortran3:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Preparing to unpack .../gcc-4.9-base_4.9.2-10+deb8u2_amd64.deb ... Unpacking gcc-4.9-base:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9752 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9.2-10+deb8u2_amd64.deb ... Unpacking libgcc1:amd64 (1:4.9.2-10+deb8u2) over (1:4.9.2-10+deb8u1) ... Setting up libgcc1:amd64 (1:4.9.2-10+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9752 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.2-10+deb8u2_amd64.deb ... Unpacking libstdc++6:amd64 (4.9.2-10+deb8u2) over (4.9.2-10+deb8u1) ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9752 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2+deb8u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-2+deb8u1) over (1:1.2.8.dfsg-2+b1) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-2+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9751 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.9.8.6_amd64.deb ... Unpacking libapt-pkg4.12:amd64 (1.0.9.8.6) over (1.0.9.8.4) ... Setting up libapt-pkg4.12:amd64 (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9751 files and directories currently installed.) Preparing to unpack .../apt_1.0.9.8.6_amd64.deb ... Unpacking apt (1.0.9.8.6) over (1.0.9.8.4) ... Setting up apt (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9751 files and directories currently installed.) Preparing to unpack .../libudev1_215-17+deb8u13_amd64.deb ... Unpacking libudev1:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libudev1:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9751 files and directories currently installed.) Preparing to unpack .../udev_215-17+deb8u13_amd64.deb ... Unpacking udev (215-17+deb8u13) over (215-17+deb8u7) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up udev (215-17+deb8u13) ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. A chroot environment has been detected, udev not started. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9751 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libcomerr2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9750 files and directories currently installed.) Preparing to unpack .../libss2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libss2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libss2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9749 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.3-2+deb8u8_amd64.deb ... Unpacking libgcrypt20:amd64 (1.6.3-2+deb8u8) over (1.6.3-2+deb8u4) ... Setting up libgcrypt20:amd64 (1.6.3-2+deb8u8) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9749 files and directories currently installed.) Preparing to unpack .../libsystemd0_215-17+deb8u13_amd64.deb ... Unpacking libsystemd0:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libsystemd0:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9749 files and directories currently installed.) Preparing to unpack .../systemd_215-17+deb8u13_amd64.deb ... Unpacking systemd (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd (215-17+deb8u13) ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9749 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u13_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd-sysv (215-17+deb8u13) ... Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9749 files and directories currently installed.) Preparing to unpack .../libbsd0_0.7.0-2+deb8u1_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2+deb8u1) ... Preparing to unpack .../libexpat1_2.1.0-6+deb8u6_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u6) over (2.1.0-6+deb8u4) ... Preparing to unpack .../libfreetype6_2.5.2-3+deb8u4_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u4) over (2.5.2-3+deb8u2) ... Preparing to unpack .../libglib2.0-0_2.42.1-1+deb8u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.42.1-1+deb8u3) over (2.42.1-1+b1) ... Preparing to unpack .../libharfbuzz0b_0.9.35-2+deb8u1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (0.9.35-2+deb8u1) over (0.9.35-2) ... Preparing to unpack .../libice6_2%3a1.0.9-1+deb8u1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+deb8u1) over (2:1.0.9-1+b1) ... Preparing to unpack .../libpixman-1-0_0.32.6-3+deb8u1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.32.6-3+deb8u1) over (0.32.6-3) ... Preparing to unpack .../libjpeg62-turbo_1%3a1.3.1-12+deb8u2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) over (1:1.3.1-12) ... Preparing to unpack .../libtiff5_4.0.3-12.3+deb8u10_amd64.deb ... Unpacking libtiff5:amd64 (4.0.3-12.3+deb8u10) over (4.0.3-12.3+deb8u5) ... Preparing to unpack .../libx11-data_2%3a1.6.2-3+deb8u2_all.deb ... Unpacking libx11-data (2:1.6.2-3+deb8u2) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libx11-6_2%3a1.6.2-3+deb8u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3+deb8u2) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+deb8u1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+deb8u1) over (1:1.1.1-1+b1) ... Preparing to unpack .../tzdata_2019c-0+deb8u1_all.deb ... Unpacking tzdata (2019c-0+deb8u1) over (2018e-0+deb8u1) ... Setting up tzdata (2019c-0+deb8u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Nov 19 19:59:16 UTC 2022. Universal Time is now: Sat Nov 19 19:59:16 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9755 files and directories currently installed.) Preparing to unpack .../unzip_6.0-16+deb8u6_amd64.deb ... Unpacking unzip (6.0-16+deb8u6) over (6.0-16+deb8u3) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u2) ... Setting up libgomp1:amd64 (4.9.2-10+deb8u2) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u2) ... Setting up libbsd0:amd64 (0.7.0-2+deb8u1) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u6) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u4) ... Setting up libglib2.0-0:amd64 (2.42.1-1+deb8u3) ... No schema files found: doing nothing. Setting up libharfbuzz0b:amd64 (0.9.35-2+deb8u1) ... Setting up libice6:amd64 (2:1.0.9-1+deb8u1) ... Setting up libpixman-1-0:amd64 (0.32.6-3+deb8u1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Setting up libx11-data (2:1.6.2-3+deb8u2) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Setting up unzip (6.0-16+deb8u6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-yf', 'dist-upgrade'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.9s DUMP: ea587cb5da6f95fbc79bf1681671e909 - 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'show', '--no-all-versions', 'r-cran-haplo.stats'] 0m21.9s DUMP: Package: r-cran-haplo.stats Version: 1.6.11-1 Installed-Size: 1254 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), r-base-core (>= 3.1.1-1) Description-en: GNU R package for haplotype analysis The package provides routines for the GNU R statistics environment for statistical Analysis of indirectly measured Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em, haplo.glm, haplo.score, haplo.power, and seqhap. Description-md5: 0667f477cd725a6f574085cfa7efa687 Homepage: http://cran.r-project.org/web/packages/haplo.stats Tag: devel::lang:r, field::biology, field::biology:bioinformatics, implemented-in::r, use::analysing Section: gnu-r Priority: optional Filename: pool/main/r/r-cran-haplo.stats/r-cran-haplo.stats_1.6.11-1_amd64.deb Size: 1132914 MD5sum: 832a48aef6014f693d76d9f0ef6fa847 SHA1: 50c417e48876d423f5e7cf241f239aeb36661418 SHA256: 19a4831c6c5bf78459aee4edddb9483ce949582e202168903f1601e9b5f53ebd 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'show', '--no-all-versions', 'r-cran-haplo.stats'] 0m21.9s INFO: apt-cache knows about the following packages: r-cran-haplo.stats 0m21.9s INFO: Running scripts pre_install 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_database-server'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_database-server'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_exceptions'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_extras'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_extras'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy'] 0m22.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy', 'r-cran-haplo.stats'] 0m22.0s DUMP: r-cran-haplo.stats: Installed: 1.6.11-1 Candidate: 1.6.11-1 Version table: *** 1.6.11-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy', 'r-cran-haplo.stats'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-y', 'install', 'r-cran-haplo.stats'] 0m22.2s DUMP: Reading package lists... Building dependency tree... Reading state information... r-cran-haplo.stats is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-y', 'install', 'r-cran-haplo.stats'] 0m22.2s INFO: Running scripts post_install 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_install_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_install_exceptions'] 0m22.2s INFO: Running scripts post_distupgrade 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m22.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m22.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m23.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m23.3s INFO: Running scripts pre_install 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_exceptions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_exceptions'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_extras'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_extras'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy'] 0m23.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy', 'r-cran-haplo.stats'] 0m23.4s DUMP: r-cran-haplo.stats: Installed: 1.6.11-1 Candidate: 1.6.11-1 Version table: *** 1.6.11-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-cache', 'policy', 'r-cran-haplo.stats'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-y', 'install', 'r-cran-haplo.stats=1.6.11-1'] 0m23.8s DUMP: Reading package lists... Building dependency tree... Reading state information... r-cran-haplo.stats is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', '-y', 'install', 'r-cran-haplo.stats=1.6.11-1'] 0m23.8s INFO: Running scripts post_install 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_install_exceptions'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_install_exceptions'] 0m23.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m24.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m24.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', '-ac', '--ignore-obsolete'] 0m25.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', '-ac', '--ignore-obsolete'] 0m25.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.6s DUMP: 0.15.6 0m25.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.6s INFO: Running adequate version 0.15.6 now. 0m25.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'r-cran-haplo.stats'] 0m25.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'r-cran-haplo.stats'] 0m25.7s INFO: Running scripts pre_remove 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_exceptions'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/pre_remove_exceptions'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.3s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.6 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+deb8u2 install ok installed e2fsprogs e2fsprogs 1.42.12-2+deb8u2 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u2 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.6 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblas-common libblas-common 1.2.20110419-10 install ok installed libblas3 libblas3 1.2.20110419-10 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd0:amd64 libbsd0 0.7.0-2+deb8u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+deb8u2 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcairo2:amd64 libcairo2 1.14.0-2.1+deb8u2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+deb8u2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u6 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u4 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u2 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u8 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u2 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.42.1-1+deb8u3 install ok installed libgomp1:amd64 libgomp1 4.9.2-10+deb8u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1~deb8u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 0.9.35-2+deb8u1 install ok installed libice6:amd64 libice6 2:1.0.9-1+deb8u1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12+deb8u2 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblapack3 liblapack3 3.5.0-4 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu4 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu4 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3+deb8u1 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u2 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+deb8u2 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u13 install ok installed libtcl8.5:amd64 libtcl8.5 8.5.17-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u10 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtk8.5:amd64 libtk8.5 8.5.17-1 install ok installed libudev1:amd64 libudev1 215-17+deb8u13 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u2 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+deb8u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u12 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed r-base-core r-base-core 3.1.1-1+deb8u1 install ok installed r-cran-haplo.stats r-cran-haplo.stats 1.6.11-1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u13 install ok installed systemd-sysv systemd-sysv 215-17+deb8u13 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u2 install ok installed tzdata tzdata 2019c-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u13 install ok installed unzip unzip 6.0-16+deb8u6 install ok installed util-linux util-linux 2.25.2-6 install ok installed x11-common x11-common 1:7.7+7 install ok installed xdg-utils xdg-utils 1.1.0~rc1+git20111210-7.4+deb8u1 install ok installed zip zip 3.0-8 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+deb8u1 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', 'remove', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libquadmath0:amd64', 'libsm6:amd64', 'libtcl8.5:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'r-base-core', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-cran-haplo.stats'] 0m28.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libbsd0 libcairo2 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg62-turbo liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng12-0 libquadmath0 libsm6 libtcl8.5 libthai-data libthai0 libtiff5 libtk8.5 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core r-cran-haplo.stats unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 53 to remove and 0 not upgraded. After this operation, 72.4 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9755 files and directories currently installed.) Removing r-cran-haplo.stats (1.6.11-1) ... Removing r-base-core (3.1.1-1+deb8u1) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing libtk8.5:amd64 (8.5.17-1) ... Removing libxft2:amd64 (2.3.2-1) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Removing liblapack3 (3.5.0-4) ... Removing libblas3 (1.2.20110419-10) ... Removing libblas-common (1.2.20110419-10) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libice6:amd64 (2:1.0.9-1+deb8u1) ... Removing libbsd0:amd64 (0.7.0-2+deb8u1) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libharfbuzz0b:amd64 (0.9.35-2+deb8u1) ... Removing libglib2.0-0:amd64 (2.42.1-1+deb8u3) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libgomp1:amd64 (4.9.2-10+deb8u2) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Removing libpaper-utils (1.1.24+nmu4) ... Removing libpaper1:amd64 (1.1.24+nmu4) ... Removing libpixman-1-0:amd64 (0.32.6-3+deb8u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libtcl8.5:amd64 (8.5.17-1) ... Removing libthai-data (0.1.21-1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing unzip (6.0-16+deb8u6) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Removing zip (3.0-8) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Removing libx11-data (2:1.6.2-3+deb8u2) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', 'remove', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libquadmath0:amd64', 'libsm6:amd64', 'libtcl8.5:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'r-base-core', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-cran-haplo.stats'] 0m28.7s INFO: Running scripts post_remove 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_remove_exceptions'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_remove_exceptions'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg', '--purge', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libquadmath0:amd64', 'libsm6:amd64', 'libtcl8.5:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'r-base-core', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 0m29.5s DUMP: (Reading database ... 7514 files and directories currently installed.) Removing fontconfig (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed Removing libbsd0:amd64 (0.7.0-2+deb8u1) ... Purging configuration files for libbsd0:amd64 (0.7.0-2+deb8u1) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Purging configuration files for libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libdatrie1:amd64 (0.2.8-1) ... Purging configuration files for libdatrie1:amd64 (0.2.8-1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libglib2.0-0:amd64 (2.42.1-1+deb8u3) ... Purging configuration files for libglib2.0-0:amd64 (2.42.1-1+deb8u3) ... Removing libgomp1:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libgomp1:amd64 (4.9.2-10+deb8u2) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Purging configuration files for libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libharfbuzz0b:amd64 (0.9.35-2+deb8u1) ... Purging configuration files for libharfbuzz0b:amd64 (0.9.35-2+deb8u1) ... Removing libice6:amd64 (2:1.0.9-1+deb8u1) ... Purging configuration files for libice6:amd64 (2:1.0.9-1+deb8u1) ... Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... Purging configuration files for libjpeg62-turbo:amd64 (1:1.3.1-12+deb8u2) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed Removing libpango-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpango-1.0-0:amd64 (1.36.8-3) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangoft2-1.0-0:amd64 (1.36.8-3) ... dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Removing libpaper1:amd64 (1.1.24+nmu4) ... Purging configuration files for libpaper1:amd64 (1.1.24+nmu4) ... Removing libpixman-1-0:amd64 (0.32.6-3+deb8u1) ... Purging configuration files for libpixman-1-0:amd64 (0.32.6-3+deb8u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Purging configuration files for libsm6:amd64 (2:1.2.2-1+b1) ... Removing libtcl8.5:amd64 (8.5.17-1) ... Purging configuration files for libtcl8.5:amd64 (8.5.17-1) ... dpkg: warning: ignoring request to remove libthai-data which isn't installed Removing libthai0:amd64 (0.1.21-1) ... Purging configuration files for libthai0:amd64 (0.1.21-1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Purging configuration files for libtiff5:amd64 (4.0.3-12.3+deb8u10) ... Removing libtk8.5:amd64 (8.5.17-1) ... Purging configuration files for libtk8.5:amd64 (8.5.17-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-render0:amd64 (1.10-3+b1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Purging configuration files for libxext6:amd64 (2:1.3.3-1) ... Removing libxft2:amd64 (2.3.2-1) ... Purging configuration files for libxft2:amd64 (2.3.2-1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Purging configuration files for libxss1:amd64 (1:1.2.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Purging configuration files for libxt6:amd64 (1:1.1.4-1+b1) ... Removing r-base-core (3.1.1-1+deb8u1) ... Purging configuration files for r-base-core (3.1.1-1+deb8u1) ... Removing unzip (6.0-16+deb8u6) ... Purging configuration files for unzip (6.0-16+deb8u6) ... Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg', '--purge', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libquadmath0:amd64', 'libsm6:amd64', 'libtcl8.5:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'r-base-core', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg', '--purge', 'r-cran-haplo.stats'] 0m29.5s DUMP: dpkg: warning: ignoring request to remove r-cran-haplo.stats which isn't installed 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg', '--purge', 'r-cran-haplo.stats'] 0m29.5s INFO: Running scripts post_purge 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_purge_exceptions'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_purge_exceptions'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg', '--purge', '--pending'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg', '--purge', '--pending'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg', '--remove', '--pending'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg', '--remove', '--pending'] 0m29.6s INFO: Running scripts post_test 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_test_exceptions'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'tmp/scripts/post_test_exceptions'] 0m29.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m30.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg-divert', '--list'] 0m30.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'dpkg-divert', '--list'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', 'clean'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1', 'apt-get', 'clean'] 0m30.1s DEBUG: Recording chroot state 0m30.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/shm'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/shm'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/console'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/console'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/ptmx'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/ptmx'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/pts'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/dev/pts'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/proc'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1/proc'] 0m31.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m31.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmps4rr4zz1'] 0m31.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmps4rr4zz1 0m31.1s INFO: PASS: Upgrading between Debian distributions. 0m31.1s INFO: PASS: All tests. 0m31.1s INFO: piuparts run ends. ret=0 End: 2022-11-19 19:59:25 GMT