Start: 2022-11-15 11:17:12 GMT [jessie] Package: staden Version: 2.0.0+b10-1.1 Installed-Size: 4442 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libcurl3 (>= 7.16.2), libfontconfig1 (>= 2.11), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), liblzma5 (>= 5.1.1alpha+20120614), libpng12-0 (>= 1.2.13-4), libstaden-read1 (>= 1.13.2), libstdc++6 (>= 4.1.1), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0), libx11-6, libxext6, libxft2 (>> 2.1.1), libxss1, zlib1g (>= 1:1.2.0.2), staden-common (= 2.0.0+b10-1.1), staden-io-lib-utils, tklib Suggests: staden-doc Description: DNA sequence assembly (Gap4/Gap5), editing and analysis tools Homepage: https://staden.sf.net Description-md5: ab389488bbaa41331fbf3a76064bea10 Section: science Priority: optional Filename: pool/main/s/staden/staden_2.0.0+b10-1.1_amd64.deb Size: 1560124 MD5sum: 811baded63c97102cfd8f04e5772cbe3 SHA1: 8ca102d87c75c79a38abe07af33921baeed9c890 SHA256: eedcfe5c492d39e85dc6921293b9360dcdef3fb4d6f51932a867a511d4220286 [jessie-lts] Package: staden Version: 2.0.0+b10-1.1 Installed-Size: 4442 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libcurl3 (>= 7.16.2), libfontconfig1 (>= 2.11), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), liblzma5 (>= 5.1.1alpha+20120614), libpng12-0 (>= 1.2.13-4), libstaden-read1 (>= 1.13.2), libstdc++6 (>= 4.1.1), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0), libx11-6, libxext6, libxft2 (>> 2.1.1), libxss1, zlib1g (>= 1:1.2.0.2), staden-common (= 2.0.0+b10-1.1), staden-io-lib-utils, tklib Suggests: staden-doc Description: DNA sequence assembly (Gap4/Gap5), editing and analysis tools Homepage: https://staden.sf.net Description-md5: ab389488bbaa41331fbf3a76064bea10 Section: science Priority: optional Filename: pool/main/s/staden/staden_2.0.0+b10-1.1_amd64.deb Size: 1560124 MD5sum: 811baded63c97102cfd8f04e5772cbe3 SHA1: 8ca102d87c75c79a38abe07af33921baeed9c890 SHA256: eedcfe5c492d39e85dc6921293b9360dcdef3fb4d6f51932a867a511d4220286 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt staden=2.0.0+b10-1.1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d jessie-lts -B /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat --apt staden=2.0.0+b10-1.1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpul7ro1yx 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpul7ro1yx 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpul7ro1yx/tmp/scripts/ 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpul7ro1yx/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', 'update'] 0m3.0s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s INFO: Running scripts post_setup 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: init-system-helpers ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 83.7 kB of archives. After this operation, 334 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:2 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.7 kB in 0s (2788 kB/s) Selecting previously unselected package init-system-helpers. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.22_all.deb ... Unpacking init-system-helpers (1.22) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Setting up init-system-helpers (1.22) ... Setting up ucf (3.0030) ... 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_zz_backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_setup_zz_backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.9s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2lts/reference-chroot-metadata.dat 0m5.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m5.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m5.5s INFO: Running scripts is_testable 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/is_testable_uninstallable'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/is_testable_uninstallable'] 0m5.5s INFO: Running scripts pre_test 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_test_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_test_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_test_root_password'] 0m5.5s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_test_root_password'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'show', '--no-all-versions', 'staden'] 0m5.5s DUMP: Package: staden Version: 2.0.0+b10-1.1 Installed-Size: 4442 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libcurl3 (>= 7.16.2), libfontconfig1 (>= 2.11), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), liblzma5 (>= 5.1.1alpha+20120614), libpng12-0 (>= 1.2.13-4), libstaden-read1 (>= 1.13.2), libstdc++6 (>= 4.1.1), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0), libx11-6, libxext6, libxft2 (>> 2.1.1), libxss1, zlib1g (>= 1:1.2.0.2), staden-common (= 2.0.0+b10-1.1), staden-io-lib-utils, tklib Suggests: staden-doc Description-en: DNA sequence assembly (Gap4/Gap5), editing and analysis tools Staden is a fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin). . Gap4 performs sequence assembly, contig ordering based on read pair data, contig joining based on sequence comparisons, assembly checking, repeat searching, experiment suggestion, read pair analysis and contig editing. It has graphical views of contigs, templates, readings and traces which all scroll in register. Contig editor searches and experiment suggestion routines use confidence values to calculate the confidence of the consensus sequence and hence identify only places requiring visual trace inspection or extra data. The result is extremely rapid finishing and a consensus of known accuracy. . Pregap4 provides a graphical user interface to set up the processing required to prepare trace data for assembly or analysis, and automates these processes. . Trev is a rapid and flexible viewer and editor for ABI, ALF, SCF and ZTR trace files. . Prefinish analyses partially completed sequence assemblies and suggests the most efficient set of experiments to help finish the project. . Tracediff and hetscan automatically locate mutations by comparing trace data against reference traces. They annotate the mutations found ready for viewing in gap4. . Spin analyses nucleotide sequences to find genes, restriction sites, motifs, etc. It can perform translations, find open reading frames, count codons, etc. Many results are presented graphically and a sliding sequence window is linked to the graphics cursor. Spin also compares pairs of sequences in many ways. It has very rapid dot matrix analysis, global and local alignment algorithms, plus a sliding sequence window linked to the graphical plots. It can compare nucleic acid against nucleic acid, protein against protein, and protein against nucleic acid. Description-md5: ab389488bbaa41331fbf3a76064bea10 Homepage: https://staden.sf.net Section: science Priority: optional Filename: pool/main/s/staden/staden_2.0.0+b10-1.1_amd64.deb Size: 1560124 MD5sum: 811baded63c97102cfd8f04e5772cbe3 SHA1: 8ca102d87c75c79a38abe07af33921baeed9c890 SHA256: eedcfe5c492d39e85dc6921293b9360dcdef3fb4d6f51932a867a511d4220286 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'show', '--no-all-versions', 'staden'] 0m5.5s INFO: apt-cache knows about the following packages: staden 0m5.5s INFO: Running scripts pre_install 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy'] 0m5.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy', 'staden'] 0m5.7s DUMP: staden: Installed: (none) Candidate: 2.0.0+b10-1.1 Version table: 2.0.0+b10-1.1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy', 'staden'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-y', 'install', 'staden'] 0m11.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: fontconfig-config fonts-dejavu-core libcurl3 libcurl3-gnutls libexpat1 libffi6 libfontconfig1 libfreetype6 libgmp10 libgnutls-deb0-28 libgssapi-krb5-2 libhogweed2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libnettle4 libp11-kit0 libpng12-0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl1.0.0 libstaden-read1 libtasn1-6 libtcl8.6 libtk8.6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 staden-common staden-io-lib-utils tcl tcl8.6 tk tk8.6 tklib x11-common Suggested packages: gnutls-bin krb5-doc krb5-user staden-doc staden-io-lib-examples tcl-tclreadline Recommended packages: ca-certificates krb5-locales libsasl2-modules ksh zsh xterm x-terminal-emulator tcllib The following NEW packages will be installed: fontconfig-config fonts-dejavu-core libcurl3 libcurl3-gnutls libexpat1 libffi6 libfontconfig1 libfreetype6 libgmp10 libgnutls-deb0-28 libgssapi-krb5-2 libhogweed2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libnettle4 libp11-kit0 libpng12-0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl1.0.0 libstaden-read1 libtasn1-6 libtcl8.6 libtk8.6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 staden staden-common staden-io-lib-utils tcl tcl8.6 tk tk8.6 tklib x11-common 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 15.0 MB of archives. After this operation, 43.9 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:2 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:3 http://deb.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:4 http://deb.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:5 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:6 http://deb.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:7 http://deb.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:8 http://deb.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:9 http://deb.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:10 http://deb.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:11 http://deb.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:12 http://deb.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:13 http://deb.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:14 http://deb.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:15 http://deb.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:16 http://deb.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:17 http://deb.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:18 http://deb.debian.org/debian/ jessie/main librtmp1 amd64 2.4+20150115.gita107cef-1+deb8u1 [60.0 kB] Get:19 http://deb.debian.org/debian/ jessie/main libssh2-1 amd64 1.4.3-4.1+deb8u1 [125 kB] Get:20 http://deb.debian.org/debian/ jessie/main libcurl3 amd64 7.38.0-4+deb8u11 [260 kB] Get:21 http://deb.debian.org/debian/ jessie/main libcurl3-gnutls amd64 7.38.0-4+deb8u11 [253 kB] Get:22 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:23 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:24 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:25 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:26 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:27 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:28 http://deb.debian.org/debian/ jessie/main libtcl8.6 amd64 8.6.2+dfsg-2 [978 kB] Get:29 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:30 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:31 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:32 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:33 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:34 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:35 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:36 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:37 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:38 http://deb.debian.org/debian/ jessie/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:39 http://deb.debian.org/debian/ jessie/main libtk8.6 amd64 8.6.2-1 [771 kB] Get:40 http://deb.debian.org/debian/ jessie/main libstaden-read1 amd64 1.13.7-1 [260 kB] Get:41 http://deb.debian.org/debian/ jessie/main tk8.6 amd64 8.6.2-1 [71.1 kB] Get:42 http://deb.debian.org/debian/ jessie/main tcl8.6 amd64 8.6.2+dfsg-2 [122 kB] Get:43 http://deb.debian.org/debian/ jessie/main tcl amd64 8.6.0+8 [5366 B] Get:44 http://deb.debian.org/debian/ jessie/main tk amd64 8.6.0+8 [5388 B] Get:45 http://deb.debian.org/debian/ jessie/main staden-common all 2.0.0+b10-1.1 [1939 kB] Get:46 http://deb.debian.org/debian/ jessie/main staden-io-lib-utils amd64 1.13.7-1 [210 kB] Get:47 http://deb.debian.org/debian/ jessie/main tklib all 0.6-1+deb8u1 [1023 kB] Get:48 http://deb.debian.org/debian/ jessie/main staden amd64 2.0.0+b10-1.1 [1560 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.0 MB in 1s (8944 kB/s) Selecting previously unselected package libssl1.0.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7475 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libnettle4:amd64. 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Unpacking libxft2:amd64 (2.3.2-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+7_all.deb ... Unpacking x11-common (1:7.7+7) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../libxss1_1%3a1.2.2-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.2-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../libtk8.6_8.6.2-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.2-1) ... Selecting previously unselected package libstaden-read1. Preparing to unpack .../libstaden-read1_1.13.7-1_amd64.deb ... Unpacking libstaden-read1 (1.13.7-1) ... Selecting previously unselected package tk8.6. Preparing to unpack .../tk8.6_8.6.2-1_amd64.deb ... Unpacking tk8.6 (8.6.2-1) ... Selecting previously unselected package tcl8.6. Preparing to unpack .../tcl8.6_8.6.2+dfsg-2_amd64.deb ... Unpacking tcl8.6 (8.6.2+dfsg-2) ... Selecting previously unselected package tcl. 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Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Setting up libcurl3:amd64 (7.38.0-4+deb8u11) ... Setting up libcurl3-gnutls:amd64 (7.38.0-4+deb8u11) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up libtcl8.6:amd64 (8.6.2+dfsg-2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.6:amd64 (8.6.2-1) ... Setting up libstaden-read1 (1.13.7-1) ... Setting up tk8.6 (8.6.2-1) ... Setting up tcl8.6 (8.6.2+dfsg-2) ... Setting up tcl (8.6.0+8) ... Setting up tk (8.6.0+8) ... Setting up staden-common (2.0.0+b10-1.1) ... Setting up staden-io-lib-utils (1.13.7-1) ... Setting up tklib (0.6-1+deb8u1) ... Setting up staden (2.0.0+b10-1.1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-y', 'install', 'staden'] 0m11.6s INFO: Running scripts post_install 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_install_exceptions'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_install_exceptions'] 0m11.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m12.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m12.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpul7ro1yx to jessie-lts 0m12.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main deb http://security.debian.org jessie/updates main 0m12.1s INFO: Running scripts pre_distupgrade 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', 'update'] 0m13.7s DUMP: Get:1 http://security.debian.org jessie/updates InRelease [44.9 kB] Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Get:2 http://security.debian.org jessie/updates/main amd64 Packages [781 kB] Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Get:3 http://security.debian.org jessie/updates/main Translation-en [401 kB] Fetched 1227 kB in 0s (1631 kB/s) Reading package lists... 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', 'update'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-yf', 'dist-upgrade'] 0m19.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt bash e2fslibs e2fsprogs gcc-4.9-base libapt-pkg4.12 libbz2-1.0 libcomerr2 libcurl3 libcurl3-gnutls libexpat1 libfreetype6 libgcc1 libgcrypt20 libgnutls-deb0-28 libgssapi-krb5-2 libidn11 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsasl2-modules-db libss2 libssh2-1 libssl1.0.0 libstdc++6 libsystemd0 libtasn1-6 libudev1 libx11-6 libx11-data libxdmcp6 perl-base systemd systemd-sysv tar tzdata udev zlib1g 40 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 16.0 MB of archives. After this operation, 4540 kB of additional disk space will be used. Get:1 http://security.debian.org/ jessie/updates/main bash amd64 4.3-11+deb8u2 [1173 kB] Get:2 http://security.debian.org/ jessie/updates/main e2fslibs amd64 1.42.12-2+deb8u2 [186 kB] Get:3 http://security.debian.org/ jessie/updates/main e2fsprogs amd64 1.42.12-2+deb8u2 [751 kB] Get:4 http://security.debian.org/ jessie/updates/main perl-base amd64 5.20.2-3+deb8u12 [1231 kB] Get:5 http://security.debian.org/ jessie/updates/main tar amd64 1.27.1-2+deb8u2 [676 kB] Get:6 http://security.debian.org/ jessie/updates/main libbz2-1.0 amd64 1.0.6-7+deb8u2 [43.3 kB] Get:7 http://security.debian.org/ jessie/updates/main gcc-4.9-base amd64 4.9.2-10+deb8u2 [160 kB] Get:8 http://security.debian.org/ jessie/updates/main libgcc1 amd64 1:4.9.2-10+deb8u2 [39.4 kB] Get:9 http://security.debian.org/ jessie/updates/main libstdc++6 amd64 4.9.2-10+deb8u2 [273 kB] Get:10 http://security.debian.org/ jessie/updates/main zlib1g amd64 1:1.2.8.dfsg-2+deb8u1 [88.3 kB] Get:11 http://security.debian.org/ jessie/updates/main libapt-pkg4.12 amd64 1.0.9.8.6 [794 kB] Get:12 http://security.debian.org/ jessie/updates/main apt amd64 1.0.9.8.6 [1109 kB] Get:13 http://security.debian.org/ jessie/updates/main libudev1 amd64 215-17+deb8u13 [58.8 kB] Get:14 http://security.debian.org/ jessie/updates/main udev amd64 215-17+deb8u13 [878 kB] Get:15 http://security.debian.org/ jessie/updates/main libcomerr2 amd64 1.42.12-2+deb8u2 [60.6 kB] Get:16 http://security.debian.org/ jessie/updates/main libss2 amd64 1.42.12-2+deb8u2 [64.9 kB] Get:17 http://security.debian.org/ jessie/updates/main libgcrypt20 amd64 1.6.3-2+deb8u8 [394 kB] Get:18 http://security.debian.org/ jessie/updates/main libsystemd0 amd64 215-17+deb8u13 [90.5 kB] Get:19 http://security.debian.org/ jessie/updates/main systemd amd64 215-17+deb8u13 [2555 kB] Get:20 http://security.debian.org/ jessie/updates/main systemd-sysv amd64 215-17+deb8u13 [37.5 kB] Get:21 http://security.debian.org/ jessie/updates/main libssl1.0.0 amd64 1.0.1t-1+deb8u12 [1049 kB] Get:22 http://security.debian.org/ jessie/updates/main libtasn1-6 amd64 4.2-3+deb8u4 [49.3 kB] Get:23 http://security.debian.org/ jessie/updates/main libgnutls-deb0-28 amd64 3.3.30-0+deb8u1 [749 kB] Get:24 http://security.debian.org/ jessie/updates/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u5 [152 kB] Get:25 http://security.debian.org/ jessie/updates/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u5 [303 kB] Get:26 http://security.debian.org/ jessie/updates/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u5 [59.5 kB] Get:27 http://security.debian.org/ jessie/updates/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u5 [115 kB] Get:28 http://security.debian.org/ jessie/updates/main libidn11 amd64 1.29-1+deb8u3 [137 kB] Get:29 http://security.debian.org/ jessie/updates/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u2 [67.3 kB] Get:30 http://security.debian.org/ jessie/updates/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u2 [105 kB] Get:31 http://security.debian.org/ jessie/updates/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u6 [218 kB] Get:32 http://security.debian.org/ jessie/updates/main libssh2-1 amd64 1.4.3-4.1+deb8u6 [128 kB] Get:33 http://security.debian.org/ jessie/updates/main libcurl3 amd64 7.38.0-4+deb8u16 [261 kB] Get:34 http://security.debian.org/ jessie/updates/main libcurl3-gnutls amd64 7.38.0-4+deb8u16 [253 kB] Get:35 http://security.debian.org/ jessie/updates/main libexpat1 amd64 2.1.0-6+deb8u6 [80.3 kB] Get:36 http://security.debian.org/ jessie/updates/main libfreetype6 amd64 2.5.2-3+deb8u4 [467 kB] Get:37 http://security.debian.org/ jessie/updates/main libx11-data all 2:1.6.2-3+deb8u2 [126 kB] Get:38 http://security.debian.org/ jessie/updates/main libx11-6 amd64 2:1.6.2-3+deb8u2 [729 kB] Get:39 http://security.debian.org/ jessie/updates/main libxdmcp6 amd64 1:1.1.1-1+deb8u1 [24.7 kB] Get:40 http://security.debian.org/ jessie/updates/main tzdata all 2019c-0+deb8u1 [234 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.0 MB in 0s (24.9 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9678 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.9.8.6_amd64.deb ... Unpacking libapt-pkg4.12:amd64 (1.0.9.8.6) over (1.0.9.8.4) ... Setting up libapt-pkg4.12:amd64 (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9678 files and directories currently installed.) Preparing to unpack .../apt_1.0.9.8.6_amd64.deb ... Unpacking apt (1.0.9.8.6) over (1.0.9.8.4) ... Setting up apt (1.0.9.8.6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9678 files and directories currently installed.) Preparing to unpack .../libudev1_215-17+deb8u13_amd64.deb ... Unpacking libudev1:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libudev1:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9678 files and directories currently installed.) Preparing to unpack .../udev_215-17+deb8u13_amd64.deb ... Unpacking udev (215-17+deb8u13) over (215-17+deb8u7) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up udev (215-17+deb8u13) ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. A chroot environment has been detected, udev not started. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9678 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libcomerr2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9677 files and directories currently installed.) Preparing to unpack .../libss2_1.42.12-2+deb8u2_amd64.deb ... Unpacking libss2:amd64 (1.42.12-2+deb8u2) over (1.42.12-2+b1) ... Setting up libss2:amd64 (1.42.12-2+deb8u2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9676 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.3-2+deb8u8_amd64.deb ... Unpacking libgcrypt20:amd64 (1.6.3-2+deb8u8) over (1.6.3-2+deb8u4) ... Setting up libgcrypt20:amd64 (1.6.3-2+deb8u8) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9676 files and directories currently installed.) Preparing to unpack .../libsystemd0_215-17+deb8u13_amd64.deb ... Unpacking libsystemd0:amd64 (215-17+deb8u13) over (215-17+deb8u7) ... Setting up libsystemd0:amd64 (215-17+deb8u13) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9676 files and directories currently installed.) Preparing to unpack .../systemd_215-17+deb8u13_amd64.deb ... Unpacking systemd (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd (215-17+deb8u13) ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9676 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u13_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u13) over (215-17+deb8u7) ... Setting up systemd-sysv (215-17+deb8u13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9676 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u12_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u12) over (1.0.1t-1+deb8u8) ... Preparing to unpack .../libtasn1-6_4.2-3+deb8u4_amd64.deb ... Unpacking libtasn1-6:amd64 (4.2-3+deb8u4) over (4.2-3+deb8u3) ... Preparing to unpack .../libgnutls-deb0-28_3.3.30-0+deb8u1_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) over (3.3.8-6+deb8u7) ... Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-19+deb8u5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-19+deb8u5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-19+deb8u5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-19+deb8u5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) over (1.12.1+dfsg-19+deb8u4) ... Preparing to unpack .../libidn11_1.29-1+deb8u3_amd64.deb ... Unpacking libidn11:amd64 (1.29-1+deb8u3) over (1.29-1+deb8u2) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-13+deb8u2_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u2) over (2.1.26.dfsg1-13+deb8u1) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-13+deb8u2_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) over (2.1.26.dfsg1-13+deb8u1) ... Preparing to unpack .../libldap-2.4-2_2.4.40+dfsg-1+deb8u6_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) over (2.4.40+dfsg-1+deb8u4) ... Preparing to unpack .../libssh2-1_1.4.3-4.1+deb8u6_amd64.deb ... Unpacking libssh2-1:amd64 (1.4.3-4.1+deb8u6) over (1.4.3-4.1+deb8u1) ... Preparing to unpack .../libcurl3_7.38.0-4+deb8u16_amd64.deb ... Unpacking libcurl3:amd64 (7.38.0-4+deb8u16) over (7.38.0-4+deb8u11) ... Preparing to unpack .../libcurl3-gnutls_7.38.0-4+deb8u16_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.38.0-4+deb8u16) over (7.38.0-4+deb8u11) ... Preparing to unpack .../libexpat1_2.1.0-6+deb8u6_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u6) over (2.1.0-6+deb8u4) ... Preparing to unpack .../libfreetype6_2.5.2-3+deb8u4_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-3+deb8u4) over (2.5.2-3+deb8u2) ... Preparing to unpack .../libx11-data_2%3a1.6.2-3+deb8u2_all.deb ... Unpacking libx11-data (2:1.6.2-3+deb8u2) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libx11-6_2%3a1.6.2-3+deb8u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-3+deb8u2) over (2:1.6.2-3+deb8u1) ... Preparing to unpack .../libxdmcp6_1%3a1.1.1-1+deb8u1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1+deb8u1) over (1:1.1.1-1+b1) ... Preparing to unpack .../tzdata_2019c-0+deb8u1_all.deb ... Unpacking tzdata (2019c-0+deb8u1) over (2018e-0+deb8u1) ... Setting up tzdata (2019c-0+deb8u1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Nov 15 11:17:32 UTC 2022. Universal Time is now: Tue Nov 15 11:17:32 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u4) ... Setting up libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) ... Setting up libidn11:amd64 (1.29-1+deb8u3) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u2) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u6) ... Setting up libcurl3:amd64 (7.38.0-4+deb8u16) ... Setting up libcurl3-gnutls:amd64 (7.38.0-4+deb8u16) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u6) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u4) ... Setting up libx11-data (2:1.6.2-3+deb8u2) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-yf', 'dist-upgrade'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.8s DUMP: ea587cb5da6f95fbc79bf1681671e909 - 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'show', '--no-all-versions', 'staden'] 0m19.9s DUMP: Package: staden Version: 2.0.0+b10-1.1 Installed-Size: 4442 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libcurl3 (>= 7.16.2), libfontconfig1 (>= 2.11), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), liblzma5 (>= 5.1.1alpha+20120614), libpng12-0 (>= 1.2.13-4), libstaden-read1 (>= 1.13.2), libstdc++6 (>= 4.1.1), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0), libx11-6, libxext6, libxft2 (>> 2.1.1), libxss1, zlib1g (>= 1:1.2.0.2), staden-common (= 2.0.0+b10-1.1), staden-io-lib-utils, tklib Suggests: staden-doc Description-en: DNA sequence assembly (Gap4/Gap5), editing and analysis tools Staden is a fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin). . Gap4 performs sequence assembly, contig ordering based on read pair data, contig joining based on sequence comparisons, assembly checking, repeat searching, experiment suggestion, read pair analysis and contig editing. It has graphical views of contigs, templates, readings and traces which all scroll in register. Contig editor searches and experiment suggestion routines use confidence values to calculate the confidence of the consensus sequence and hence identify only places requiring visual trace inspection or extra data. The result is extremely rapid finishing and a consensus of known accuracy. . Pregap4 provides a graphical user interface to set up the processing required to prepare trace data for assembly or analysis, and automates these processes. . Trev is a rapid and flexible viewer and editor for ABI, ALF, SCF and ZTR trace files. . Prefinish analyses partially completed sequence assemblies and suggests the most efficient set of experiments to help finish the project. . Tracediff and hetscan automatically locate mutations by comparing trace data against reference traces. They annotate the mutations found ready for viewing in gap4. . Spin analyses nucleotide sequences to find genes, restriction sites, motifs, etc. It can perform translations, find open reading frames, count codons, etc. Many results are presented graphically and a sliding sequence window is linked to the graphics cursor. Spin also compares pairs of sequences in many ways. It has very rapid dot matrix analysis, global and local alignment algorithms, plus a sliding sequence window linked to the graphical plots. It can compare nucleic acid against nucleic acid, protein against protein, and protein against nucleic acid. Description-md5: ab389488bbaa41331fbf3a76064bea10 Homepage: https://staden.sf.net Section: science Priority: optional Filename: pool/main/s/staden/staden_2.0.0+b10-1.1_amd64.deb Size: 1560124 MD5sum: 811baded63c97102cfd8f04e5772cbe3 SHA1: 8ca102d87c75c79a38abe07af33921baeed9c890 SHA256: eedcfe5c492d39e85dc6921293b9360dcdef3fb4d6f51932a867a511d4220286 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'show', '--no-all-versions', 'staden'] 0m19.9s INFO: apt-cache knows about the following packages: staden 0m19.9s INFO: Running scripts pre_install 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_database-server'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_database-server'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_exceptions'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_exceptions'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_extras'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_extras'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy'] 0m20.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy', 'staden'] 0m20.0s DUMP: staden: Installed: 2.0.0+b10-1.1 Candidate: 2.0.0+b10-1.1 Version table: *** 2.0.0+b10-1.1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy', 'staden'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-y', 'install', 'staden'] 0m20.3s DUMP: Reading package lists... Building dependency tree... Reading state information... staden is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-y', 'install', 'staden'] 0m20.3s INFO: Running scripts post_install 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_install_exceptions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_install_exceptions'] 0m20.3s INFO: Running scripts post_distupgrade 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m20.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m20.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m21.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m21.2s INFO: Running scripts pre_install 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_database-server'] 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_database-server'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_exceptions'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_exceptions'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_extras'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_extras'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy'] 0m21.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldoldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy', 'staden'] 0m21.4s DUMP: staden: Installed: 2.0.0+b10-1.1 Candidate: 2.0.0+b10-1.1 Version table: *** 2.0.0+b10-1.1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-cache', 'policy', 'staden'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-y', 'install', 'staden=2.0.0+b10-1.1'] 0m21.6s DUMP: Reading package lists... Building dependency tree... Reading state information... staden is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', '-y', 'install', 'staden=2.0.0+b10-1.1'] 0m21.6s INFO: Running scripts post_install 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_install_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_install_exceptions'] 0m21.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m22.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m22.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', '-ac', '--ignore-obsolete'] 0m23.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', '-ac', '--ignore-obsolete'] 0m23.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.3s DUMP: 0.15.6 0m23.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.3s INFO: Running adequate version 0.15.6 now. 0m23.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'staden'] 0m23.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'staden'] 0m23.4s INFO: Running scripts pre_remove 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_exceptions'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/pre_remove_exceptions'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m24.7s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.6 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+deb8u2 install ok installed e2fsprogs e2fsprogs 1.42.12-2+deb8u2 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u2 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.6 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+deb8u2 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+deb8u2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libcurl3:amd64 libcurl3 7.38.0-4+deb8u16 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.38.0-4+deb8u16 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u6 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u4 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u2 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u8 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.30-0+deb8u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u5 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u3 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u5 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u6 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed librtmp1:amd64 librtmp1 2.4+20150115.gita107cef-1+deb8u1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u2 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+deb8u2 install ok installed libssh2-1:amd64 libssh2-1 1.4.3-4.1+deb8u6 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u12 install ok installed libstaden-read1 libstaden-read1 1.13.7-1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u13 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u4 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.2+dfsg-2 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtk8.6:amd64 libtk8.6 8.6.2-1 install ok installed libudev1:amd64 libudev1 215-17+deb8u13 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u2 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+deb8u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u12 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed staden staden 2.0.0+b10-1.1 install ok installed staden-common staden-common 2.0.0+b10-1.1 install ok installed staden-io-lib-utils staden-io-lib-utils 1.13.7-1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u13 install ok installed systemd-sysv systemd-sysv 215-17+deb8u13 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u2 install ok installed tcl tcl 8.6.0+8 install ok installed tcl8.6 tcl8.6 8.6.2+dfsg-2 install ok installed tk tk 8.6.0+8 install ok installed tk8.6 tk8.6 8.6.2-1 install ok installed tklib tklib 0.6-1+deb8u1 install ok installed tzdata tzdata 2019c-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u13 install ok installed util-linux util-linux 2.25.2-6 install ok installed x11-common x11-common 1:7.7+7 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+deb8u1 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', 'remove', 'fontconfig-config', 'fonts-dejavu-core', 'libcurl3:amd64', 'libcurl3-gnutls:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgssapi-krb5-2:amd64', 'libhogweed2:amd64', 'libidn11:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.4-2:amd64', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpng12-0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstaden-read1', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtk8.6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'staden-common', 'staden-io-lib-utils', 'tcl', 'tcl8.6', 'tk', 'tk8.6', 'tklib', 'x11-common', 'staden'] 0m25.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fontconfig-config fonts-dejavu-core libcurl3 libcurl3-gnutls libexpat1 libffi6 libfontconfig1 libfreetype6 libgmp10 libgnutls-deb0-28 libgssapi-krb5-2 libhogweed2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libnettle4 libp11-kit0 libpng12-0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl1.0.0 libstaden-read1 libtasn1-6 libtcl8.6 libtk8.6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 staden staden-common staden-io-lib-utils tcl tcl8.6 tk tk8.6 tklib x11-common 0 upgraded, 0 newly installed, 48 to remove and 0 not upgraded. After this operation, 44.6 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9678 files and directories currently installed.) Removing staden (2.0.0+b10-1.1) ... Removing tklib (0.6-1+deb8u1) ... Removing staden-common (2.0.0+b10-1.1) ... Removing tk (8.6.0+8) ... Removing tk8.6 (8.6.2-1) ... Removing libtk8.6:amd64 (8.6.2-1) ... Removing libxft2:amd64 (2.3.2-1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Removing libcurl3:amd64 (7.38.0-4+deb8u16) ... Removing staden-io-lib-utils (1.13.7-1) ... Removing libstaden-read1 (1.13.7-1) ... Removing libcurl3-gnutls:amd64 (7.38.0-4+deb8u16) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) ... Removing librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Removing libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libidn11:amd64 (1.29-1+deb8u3) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u2) ... Removing libssh2-1:amd64 (1.4.3-4.1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing libtasn1-6:amd64 (4.2-3+deb8u4) ... Removing tcl (8.6.0+8) ... Removing tcl8.6 (8.6.2+dfsg-2) ... Removing libtcl8.6:amd64 (8.6.2+dfsg-2) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Removing libx11-data (2:1.6.2-3+deb8u2) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', 'remove', 'fontconfig-config', 'fonts-dejavu-core', 'libcurl3:amd64', 'libcurl3-gnutls:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgssapi-krb5-2:amd64', 'libhogweed2:amd64', 'libidn11:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.4-2:amd64', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpng12-0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstaden-read1', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtk8.6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'staden-common', 'staden-io-lib-utils', 'tcl', 'tcl8.6', 'tk', 'tk8.6', 'tklib', 'x11-common', 'staden'] 0m25.7s INFO: Running scripts post_remove 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_remove_exceptions'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_remove_exceptions'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'libcurl3:amd64', 'libcurl3-gnutls:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgssapi-krb5-2:amd64', 'libhogweed2:amd64', 'libidn11:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.4-2:amd64', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpng12-0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstaden-read1', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtk8.6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'staden-common', 'staden-io-lib-utils', 'tcl', 'tcl8.6', 'tk', 'tk8.6', 'tklib', 'x11-common'] 0m26.2s DUMP: (Reading database ... 7513 files and directories currently installed.) Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... Removing libcurl3:amd64 (7.38.0-4+deb8u16) ... Purging configuration files for libcurl3:amd64 (7.38.0-4+deb8u16) ... Removing libcurl3-gnutls:amd64 (7.38.0-4+deb8u16) ... Purging configuration files for libcurl3-gnutls:amd64 (7.38.0-4+deb8u16) ... Removing libexpat1:amd64 (2.1.0-6+deb8u6) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u6) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u4) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u4) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Purging configuration files for libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.30-0+deb8u1) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libidn11:amd64 (1.29-1+deb8u3) ... Purging configuration files for libidn11:amd64 (1.29-1+deb8u3) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) ... Purging configuration files for libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Purging configuration files for libkeyutils1:amd64 (1.5.9-5+b1) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) ... Purging configuration files for libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) ... Purging configuration files for libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u5) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) ... Purging configuration files for libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u6) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Purging configuration files for libp11-kit0:amd64 (0.20.7-1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Purging configuration files for librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) ... Purging configuration files for libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u2) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Removing libssh2-1:amd64 (1.4.3-4.1+deb8u6) ... Purging configuration files for libssh2-1:amd64 (1.4.3-4.1+deb8u6) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u12) ... Removing libstaden-read1 (1.13.7-1) ... Purging configuration files for libstaden-read1 (1.13.7-1) ... Removing libtasn1-6:amd64 (4.2-3+deb8u4) ... Purging configuration files for libtasn1-6:amd64 (4.2-3+deb8u4) ... Removing libtcl8.6:amd64 (8.6.2+dfsg-2) ... Purging configuration files for libtcl8.6:amd64 (8.6.2+dfsg-2) ... Removing libtk8.6:amd64 (8.6.2-1) ... Purging configuration files for libtk8.6:amd64 (8.6.2-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u2) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+deb8u1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Purging configuration files for libxext6:amd64 (2:1.3.3-1) ... Removing libxft2:amd64 (2.3.2-1) ... Purging configuration files for libxft2:amd64 (2.3.2-1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Purging configuration files for libxss1:amd64 (1:1.2.2-1) ... dpkg: warning: ignoring request to remove staden-common which isn't installed dpkg: warning: ignoring request to remove staden-io-lib-utils which isn't installed dpkg: warning: ignoring request to remove tcl which isn't installed Removing tcl8.6 (8.6.2+dfsg-2) ... Purging configuration files for tcl8.6 (8.6.2+dfsg-2) ... dpkg: warning: ignoring request to remove tk which isn't installed Removing tk8.6 (8.6.2-1) ... Purging configuration files for tk8.6 (8.6.2-1) ... dpkg: warning: ignoring request to remove tklib which isn't installed Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'libcurl3:amd64', 'libcurl3-gnutls:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgssapi-krb5-2:amd64', 'libhogweed2:amd64', 'libidn11:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.4-2:amd64', 'libnettle4:amd64', 'libp11-kit0:amd64', 'libpng12-0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libstaden-read1', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtk8.6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'staden-common', 'staden-io-lib-utils', 'tcl', 'tcl8.6', 'tk', 'tk8.6', 'tklib', 'x11-common'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg', '--purge', 'staden'] 0m26.3s DUMP: (Reading database ... 7473 files and directories currently installed.) Removing staden (2.0.0+b10-1.1) ... Purging configuration files for staden (2.0.0+b10-1.1) ... 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg', '--purge', 'staden'] 0m26.3s INFO: Running scripts post_purge 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_purge_exceptions'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_purge_exceptions'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg', '--purge', '--pending'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg', '--purge', '--pending'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg', '--remove', '--pending'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg', '--remove', '--pending'] 0m26.3s INFO: Running scripts post_test 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_test_exceptions'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'tmp/scripts/post_test_exceptions'] 0m26.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m26.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg-divert', '--list'] 0m26.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'dpkg-divert', '--list'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', 'clean'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx', 'apt-get', 'clean'] 0m26.7s DEBUG: Recording chroot state 0m27.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/shm'] 0m27.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/shm'] 0m27.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/console'] 0m27.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/console'] 0m27.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/ptmx'] 0m27.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/ptmx'] 0m27.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/pts'] 0m27.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/dev/pts'] 0m27.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/proc'] 0m27.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx/proc'] 0m27.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m27.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpul7ro1yx'] 0m27.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpul7ro1yx 0m27.7s INFO: PASS: Upgrading between Debian distributions. 0m27.7s INFO: PASS: All tests. 0m27.7s INFO: piuparts run ends. ret=0 End: 2022-11-15 11:17:40 GMT