Start: 2023-01-15 07:30:31 GMT [jessie] Package: gasic Version: 0.0.r18-2 Installed-Size: 103 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-biopython, python-pysam, bowtie, bowtie2, bwa, seqan-apps Description: genome abundance similarity correction Homepage: http://sourceforge.net/projects/gasic/ Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r18-2_amd64.deb Size: 19882 MD5sum: f0423f38927183f83ec9f8ff271e706b SHA1: e3f4f0e438c7dd911a528b4226212d52c67632e1 SHA256: f42bec5be51a7738c1373b96b39cdbe059fa8e3aa5a8fb0af351e8e7874772ff [stretch] Package: gasic Version: 0.0.r19-1 Installed-Size: 74 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-biopython, python-pysam, python-matplotlib, bowtie, bowtie2, bwa, seqan-apps Description: genome abundance similarity correction Homepage: http://sourceforge.net/projects/gasic/ Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r19-1_amd64.deb Size: 19922 MD5sum: 72c96ac61c52ec65dab1caeee027c422 SHA256: cf8500919e647641eba13e8fc31d18a0d74640eb895016f01ce0e83316b16bc1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2stretch-rcmd/reference-chroot-metadata.dat --apt gasic=0.0.r19-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2stretch-rcmd/reference-chroot-metadata.dat --apt gasic=0.0.r19-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmptrskv_2y 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmptrskv_2y 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmptrskv_2y/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-get', 'update'] 0m3.2s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Ign http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main Translation-en Hit http://deb.debian.org jessie/main amd64 Packages Reading package lists... W: GPG error: http://deb.debian.org jessie Release: The following signatures were invalid: KEYEXPIRED 1668891673 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-get', 'update'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s INFO: Running scripts post_setup 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2stretch-rcmd/reference-chroot-metadata.dat 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptrskv_2y'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptrskv_2y'] 0m4.6s INFO: Running scripts is_testable 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_test_root_password'] 0m4.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_test_root_password'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 0m4.7s DUMP: Package: gasic Version: 0.0.r18-2 Installed-Size: 103 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-biopython, python-pysam, bowtie, bowtie2, bwa, seqan-apps Description-en: genome abundance similarity correction One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Homepage: http://sourceforge.net/projects/gasic/ Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r18-2_amd64.deb Size: 19882 MD5sum: f0423f38927183f83ec9f8ff271e706b SHA1: e3f4f0e438c7dd911a528b4226212d52c67632e1 SHA256: f42bec5be51a7738c1373b96b39cdbe059fa8e3aa5a8fb0af351e8e7874772ff 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 0m4.7s INFO: apt-cache knows about the following packages: gasic 0m4.7s INFO: Running scripts pre_install 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-cache', 'policy'] 0m4.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-cache', 'policy'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-cache', 'policy', 'gasic'] 0m4.8s DUMP: gasic: Installed: (none) Candidate: 0.0.r18-2 Version table: 0.0.r18-2 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-cache', 'policy', 'gasic'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-get', '-y', 'install', 'gasic'] 0m5.0s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: binutils bowtie bowtie2 bwa cpp cpp-4.9 cython file g++ g++-4.9 gcc gcc-4.9 gsfonts ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libart-2.0-2 libasan1 libatm1 libatomic1 libblas-common libblas3 libc-dev-bin libc6-dev libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libdata-optlist-perl libdata-section-perl libdns-export100 libexpat1 libexpat1-dev libfcgi-perl libffi6 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran3 libgmp10 libgomp1 libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblog-message-perl liblog-message-simple-perl liblsan0 libmagic1 libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libpackage-constants-perl libparams-util-perl libpng12-0 libpod-latex-perl libpod-readme-perl libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libsoftware-license-perl libsqlite3-0 libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libtiff5 libtsan0 libubsan0 libwebp5 libwebpdemux1 libwebpmux1 libxtables10 linux-libc-dev manpages manpages-dev mime-support ncbi-blast+ ncbi-data netbase perl perl-modules python python-all python-all-dev python-biopython python-biopython-doc python-decorator python-dev python-imaging python-minimal python-numpy python-pil python-pyrex python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python2.7 python2.7-dev python2.7-minimal rename seqan-apps Suggested packages: binutils-doc bowtie-examples bowtie2-examples samtools cpp-doc gcc-4.9-locales g++-multilib g++-4.9-multilib gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-4.9-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath0-dbg ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd glibc-doc liblcms2-utils libstdc++-4.9-doc man-browser perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl python-doc python-tk clustalo clustalw dialign dssp emboss fasttree mafft muscle phyml prank probcons python-mysqldb python-matplotlib python-rdflib python-psycopg2 raxml t-coffee wise gfortran python-nose python-numpy-dbg python-numpy-doc python-pil-doc python-pil-dbg python-renderpm-dbg pdf-viewer python-egenix-mxtexttools python-reportlab-doc python2.7-doc binfmt-support Recommended packages: libarchive-tar-perl The following NEW packages will be installed: binutils bowtie bowtie2 bwa cpp cpp-4.9 cython file g++ g++-4.9 gasic gcc gcc-4.9 gsfonts ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libart-2.0-2 libasan1 libatm1 libatomic1 libblas-common libblas3 libc-dev-bin libc6-dev libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libdata-optlist-perl libdata-section-perl libdns-export100 libexpat1 libexpat1-dev libfcgi-perl libffi6 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran3 libgmp10 libgomp1 libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblog-message-perl liblog-message-simple-perl liblsan0 libmagic1 libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libpackage-constants-perl libparams-util-perl libpng12-0 libpod-latex-perl libpod-readme-perl libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libsoftware-license-perl libsqlite3-0 libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libtiff5 libtsan0 libubsan0 libwebp5 libwebpdemux1 libwebpmux1 libxtables10 linux-libc-dev manpages manpages-dev mime-support ncbi-blast+ ncbi-data netbase perl perl-modules python python-all python-all-dev python-biopython python-biopython-doc python-decorator python-dev python-imaging python-minimal python-numpy python-pil python-pyrex python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python2.7 python2.7-dev python2.7-minimal rename seqan-apps 0 upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 130 MB of archives. After this operation, 457 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgdbm3 libssl1.0.0 libmagic1 libsqlite3-0 perl-modules perl libpython2.7-minimal python2.7-minimal python-minimal mime-support libexpat1 libffi6 libpython2.7-stdlib python2.7 libpython-stdlib python libart-2.0-2 libasan1 libatm1 libatomic1 libcilkrts5 libgmp10 libisl10 libcloog-isl4 libisc-export95 libdns-export100 libpng12-0 libfreetype6 libquadmath0 libgfortran3 libgomp1 libisccfg-export90 libirs-export91 libitm1 liblcms2-2 liblsan0 libmpfr4 libpython2.7 libc-dev-bin linux-libc-dev libc6-dev libexpat1-dev libpython2.7-dev libjbig0 libjpeg62-turbo libtiff5 libtsan0 libubsan0 libmpc3 libwebp5 libwebpdemux1 libwebpmux1 iproute2 ifupdown isc-dhcp-common isc-dhcp-client libxtables10 manpages netbase file binutils bwa cpp-4.9 cpp cython libgcc-4.9-dev gcc-4.9 gcc libstdc++-4.9-dev g++-4.9 g++ python-decorator libblas-common libblas3 liblapack3 python-numpy python-scipy python-reportlab-accel python-reportlab python-biopython python-pyrex python-pysam bowtie bowtie2 seqan-apps gasic gsfonts libalgorithm-c3-perl libarchive-extract-perl libcgi-pm-perl libfcgi-perl libcgi-fast-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libparams-util-perl libsub-install-perl libdata-optlist-perl libmro-compat-perl libsub-exporter-perl libdata-section-perl liblog-message-perl liblog-message-simple-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libpackage-constants-perl libpod-latex-perl libregexp-common-perl libpod-readme-perl libpython-dev libpython-all-dev libtext-template-perl libsoftware-license-perl libterm-ui-perl libtext-soundex-perl manpages-dev ncbi-data ncbi-blast+ python-all python2.7-dev python-dev python-all-dev python-biopython-doc python-pil python-imaging python-renderpm rename E: There are problems and -y was used without --force-yes 0m5.0s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmptrskv_2y', 'apt-get', '-y', 'install', 'gasic'] Reading package lists... Building dependency tree... The following extra packages will be installed: binutils bowtie bowtie2 bwa cpp cpp-4.9 cython file g++ g++-4.9 gcc gcc-4.9 gsfonts ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libart-2.0-2 libasan1 libatm1 libatomic1 libblas-common libblas3 libc-dev-bin libc6-dev libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libdata-optlist-perl libdata-section-perl libdns-export100 libexpat1 libexpat1-dev libfcgi-perl libffi6 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran3 libgmp10 libgomp1 libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblog-message-perl liblog-message-simple-perl liblsan0 libmagic1 libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libpackage-constants-perl libparams-util-perl libpng12-0 libpod-latex-perl libpod-readme-perl libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libsoftware-license-perl libsqlite3-0 libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libtiff5 libtsan0 libubsan0 libwebp5 libwebpdemux1 libwebpmux1 libxtables10 linux-libc-dev manpages manpages-dev mime-support ncbi-blast+ ncbi-data netbase perl perl-modules python python-all python-all-dev python-biopython python-biopython-doc python-decorator python-dev python-imaging python-minimal python-numpy python-pil python-pyrex python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python2.7 python2.7-dev python2.7-minimal rename seqan-apps Suggested packages: binutils-doc bowtie-examples bowtie2-examples samtools cpp-doc gcc-4.9-locales g++-multilib g++-4.9-multilib gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-4.9-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath0-dbg ppp rdnssd net-tools iproute2-doc resolvconf avahi-autoipd glibc-doc liblcms2-utils libstdc++-4.9-doc man-browser perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl libobject-accessor-perl python-doc python-tk clustalo clustalw dialign dssp emboss fasttree mafft muscle phyml prank probcons python-mysqldb python-matplotlib python-rdflib python-psycopg2 raxml t-coffee wise gfortran python-nose python-numpy-dbg python-numpy-doc python-pil-doc python-pil-dbg python-renderpm-dbg pdf-viewer python-egenix-mxtexttools python-reportlab-doc python2.7-doc binfmt-support Recommended packages: libarchive-tar-perl The following NEW packages will be installed: binutils bowtie bowtie2 bwa cpp cpp-4.9 cython file g++ g++-4.9 gasic gcc gcc-4.9 gsfonts ifupdown iproute2 isc-dhcp-client isc-dhcp-common libalgorithm-c3-perl libarchive-extract-perl libart-2.0-2 libasan1 libatm1 libatomic1 libblas-common libblas3 libc-dev-bin libc6-dev libcgi-fast-perl libcgi-pm-perl libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libcloog-isl4 libcpan-meta-perl libdata-optlist-perl libdata-section-perl libdns-export100 libexpat1 libexpat1-dev libfcgi-perl libffi6 libfreetype6 libgcc-4.9-dev libgdbm3 libgfortran3 libgmp10 libgomp1 libirs-export91 libisc-export95 libisccfg-export90 libisl10 libitm1 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblog-message-perl liblog-message-simple-perl liblsan0 libmagic1 libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmpc3 libmpfr4 libmro-compat-perl libpackage-constants-perl libparams-util-perl libpng12-0 libpod-latex-perl libpod-readme-perl libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libsoftware-license-perl libsqlite3-0 libssl1.0.0 libstdc++-4.9-dev libsub-exporter-perl libsub-install-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libtiff5 libtsan0 libubsan0 libwebp5 libwebpdemux1 libwebpmux1 libxtables10 linux-libc-dev manpages manpages-dev mime-support ncbi-blast+ ncbi-data netbase perl perl-modules python python-all python-all-dev python-biopython python-biopython-doc python-decorator python-dev python-imaging python-minimal python-numpy python-pil python-pyrex python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python2.7 python2.7-dev python2.7-minimal rename seqan-apps 0 upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 130 MB of archives. After this operation, 457 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgdbm3 libssl1.0.0 libmagic1 libsqlite3-0 perl-modules perl libpython2.7-minimal python2.7-minimal python-minimal mime-support libexpat1 libffi6 libpython2.7-stdlib python2.7 libpython-stdlib python libart-2.0-2 libasan1 libatm1 libatomic1 libcilkrts5 libgmp10 libisl10 libcloog-isl4 libisc-export95 libdns-export100 libpng12-0 libfreetype6 libquadmath0 libgfortran3 libgomp1 libisccfg-export90 libirs-export91 libitm1 liblcms2-2 liblsan0 libmpfr4 libpython2.7 libc-dev-bin linux-libc-dev libc6-dev libexpat1-dev libpython2.7-dev libjbig0 libjpeg62-turbo libtiff5 libtsan0 libubsan0 libmpc3 libwebp5 libwebpdemux1 libwebpmux1 iproute2 ifupdown isc-dhcp-common isc-dhcp-client libxtables10 manpages netbase file binutils bwa cpp-4.9 cpp cython libgcc-4.9-dev gcc-4.9 gcc libstdc++-4.9-dev g++-4.9 g++ python-decorator libblas-common libblas3 liblapack3 python-numpy python-scipy python-reportlab-accel python-reportlab python-biopython python-pyrex python-pysam bowtie bowtie2 seqan-apps gasic gsfonts libalgorithm-c3-perl libarchive-extract-perl libcgi-pm-perl libfcgi-perl libcgi-fast-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libparams-util-perl libsub-install-perl libdata-optlist-perl libmro-compat-perl libsub-exporter-perl libdata-section-perl liblog-message-perl liblog-message-simple-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libpackage-constants-perl libpod-latex-perl libregexp-common-perl libpod-readme-perl libpython-dev libpython-all-dev libtext-template-perl libsoftware-license-perl libterm-ui-perl libtext-soundex-perl manpages-dev ncbi-data ncbi-blast+ python-all python2.7-dev python-dev python-all-dev python-biopython-doc python-pil python-imaging python-renderpm rename E: There are problems and -y was used without --force-yes 0m5.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/shm'] 0m5.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/shm'] 0m5.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/console'] 0m5.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/console'] 0m5.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/ptmx'] 0m5.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/ptmx'] 0m5.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/pts'] 0m5.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/dev/pts'] 0m5.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/proc'] 0m5.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptrskv_2y/proc'] 0m5.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptrskv_2y'] 0m5.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptrskv_2y'] 0m5.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmptrskv_2y 0m5.5s ERROR: piuparts run ends. ret=1 End: 2023-01-15 07:30:37 GMT