Start: 2022-11-16 02:25:19 GMT [jessie] Package: r-bioc-gviz Version: 1.8.4-1 Installed-Size: 4956 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.1.1-1), r-cran-lattice, r-cran-rcolorbrewer, r-cran-latticeextra, r-cran-matrixstats, r-bioc-biobase, r-bioc-biocgenerics, r-bioc-iranges, r-bioc-annotationdbi, r-bioc-biostrings, r-bioc-genomicalignments, r-bioc-genomicfeatures (>= 1.16.2), r-bioc-genomicranges, r-bioc-biovizbase Description: Plotting data and annotation information along genomic coordinates Homepage: http://bioconductor.org/packages/release/bioc/html/Gviz.html Description-md5: a1192a0bcb8465ef96fce24dbb9e40c0 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gviz/r-bioc-gviz_1.8.4-1_all.deb Size: 3110588 MD5sum: 5565ec2cfb7fe342355d92aed4f54300 SHA1: a64e3a162de154402cf4ffdd146d9b7d39297119 SHA256: 0dfc0dd374e37090b172b7a6ef4b840e97b8c9ca8ac4a3e466c490d9b4b22f52 [stretch] Package: r-bioc-gviz Version: 1.18.1-1 Installed-Size: 6074 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.3.2-1), r-api-3, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges (>= 1.99.18), r-bioc-genomicranges (>= 1.17.20), r-bioc-xvector (>= 0.5.7), r-bioc-rtracklayer (>= 1.25.13), r-cran-lattice, r-cran-rcolorbrewer, r-bioc-biomart (>= 2.11.0), r-bioc-annotationdbi (>= 1.27.5), r-bioc-biobase (>= 2.15.3), r-bioc-genomicfeatures (>= 1.17.22), r-bioc-bsgenome (>= 1.33.1), r-bioc-biostrings (>= 2.33.11), r-bioc-biovizbase (>= 1.13.8), r-bioc-rsamtools (>= 1.17.28), r-cran-latticeextra (>= 0.6-26), r-cran-matrixstats (>= 0.8.14), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-biocgenerics (>= 0.11.3), r-cran-digest (>= 0.6.8) Suggests: r-cran-xtable Description: Plotting data and annotation information along genomic coordinates Homepage: https://bioconductor.org/packages/Gviz/ Description-md5: a1192a0bcb8465ef96fce24dbb9e40c0 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gviz/r-bioc-gviz_1.18.1-1_all.deb Size: 4295502 MD5sum: c80cbd2d9f68f7fb922772888a9d293c SHA256: 7371a8921d54f03791727a1476c970b348834e50772fcb515df881ad2cef9ee2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2stretch/reference-chroot-metadata.dat --apt r-bioc-gviz=1.18.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz -d jessie -d stretch -B /srv/piuparts.debian.org/slave/refchroot/jessie2stretch/reference-chroot-metadata.dat --apt r-bioc-gviz=1.18.1-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpczgoghnz 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpczgoghnz 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/jessie_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/console'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/console'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ jessie main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpczgoghnz/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', 'update'] 0m2.9s DUMP: Ign http://deb.debian.org jessie InRelease Hit http://deb.debian.org jessie Release.gpg Hit http://deb.debian.org jessie Release Hit http://deb.debian.org jessie/main amd64 Packages Hit http://deb.debian.org jessie/main Translation-en Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s INFO: Running scripts post_setup 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.0s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/jessie2stretch/reference-chroot-metadata.dat 0m4.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 0m4.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 0m4.3s INFO: Running scripts is_testable 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s INFO: Running scripts pre_test 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_test_root_password'] 0m4.4s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_test_root_password'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gviz'] 0m4.4s DUMP: Package: r-bioc-gviz Version: 1.8.4-1 Installed-Size: 4956 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.1.1-1), r-cran-lattice, r-cran-rcolorbrewer, r-cran-latticeextra, r-cran-matrixstats, r-bioc-biobase, r-bioc-biocgenerics, r-bioc-iranges, r-bioc-annotationdbi, r-bioc-biostrings, r-bioc-genomicalignments, r-bioc-genomicfeatures (>= 1.16.2), r-bioc-genomicranges, r-bioc-biovizbase Description-en: Plotting data and annotation information along genomic coordinates Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data. Description-md5: a1192a0bcb8465ef96fce24dbb9e40c0 Homepage: http://bioconductor.org/packages/release/bioc/html/Gviz.html Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gviz/r-bioc-gviz_1.8.4-1_all.deb Size: 3110588 MD5sum: 5565ec2cfb7fe342355d92aed4f54300 SHA1: a64e3a162de154402cf4ffdd146d9b7d39297119 SHA256: 0dfc0dd374e37090b172b7a6ef4b840e97b8c9ca8ac4a3e466c490d9b4b22f52 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gviz'] 0m4.4s INFO: apt-cache knows about the following packages: r-bioc-gviz 0m4.4s INFO: Running scripts pre_install 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy'] 0m4.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian/ jessie/main Translation-en 500 http://deb.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldoldstable,n=jessie,l=Debian,c=main origin deb.debian.org Pinned packages: 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy', 'r-bioc-gviz'] 0m4.5s DUMP: r-bioc-gviz: Installed: (none) Candidate: 1.8.4-1 Version table: 1.8.4-1 0 500 http://deb.debian.org/debian/ jessie/main amd64 Packages 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy', 'r-bioc-gviz'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-y', 'install', 'r-bioc-gviz'] 0m23.1s DUMP: Reading package lists... Building dependency tree... The following extra packages will be installed: fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2 libice6 libidn11 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libnettle4 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng12-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libtcl8.5 libthai-data libthai0 libtiff5 libtk8.5 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler r-base-core r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-variantannotation r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-chron r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-fail r-cran-foreach r-cran-foreign r-cran-formula r-cran-hmisc r-cran-iterators r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-matrixstats r-cran-munsell r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-stringr r-cran-survival r-cran-xml ucf unzip x11-common xdg-utils zip Suggested packages: gnutls-bin krb5-doc krb5-user tcl8.5 tk8.5 r-cran-getopt ess r-doc-info r-doc-pdf r-mathlib r-base-html r-bioc-snpstats r-cran-rmysql r-cran-ggplot2 r-cran-inline r-cran-runit gvfs-bin Recommended packages: ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libsasl2-modules xml-core r-recommended r-base-dev r-doc-html r-cran-doparallel r-bioc-shortread r-cran-mass r-cran-domc r-cran-abind libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2 libice6 libidn11 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libnettle4 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng12-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libtcl8.5 libthai-data libthai0 libtiff5 libtk8.5 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler r-base-core r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-variantannotation r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-chron r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-fail r-cran-foreach r-cran-foreign r-cran-formula r-cran-hmisc r-cran-iterators r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-matrixstats r-cran-munsell r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-stringr r-cran-survival r-cran-xml ucf unzip x11-common xdg-utils zip 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 87.5 MB of archives. After this operation, 168 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:2 http://deb.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:3 http://deb.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:4 http://deb.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:5 http://deb.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:6 http://deb.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:7 http://deb.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:8 http://deb.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:9 http://deb.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:10 http://deb.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:11 http://deb.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:12 http://deb.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:13 http://deb.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:14 http://deb.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:15 http://deb.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:16 http://deb.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:17 http://deb.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:18 http://deb.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:19 http://deb.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:20 http://deb.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:21 http://deb.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:22 http://deb.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:23 http://deb.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:24 http://deb.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:25 http://deb.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:26 http://deb.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:27 http://deb.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:28 http://deb.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:29 http://deb.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:30 http://deb.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:31 http://deb.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:32 http://deb.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:33 http://deb.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:34 http://deb.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:35 http://deb.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:36 http://deb.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:37 http://deb.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:38 http://deb.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:39 http://deb.debian.org/debian/ jessie/main librtmp1 amd64 2.4+20150115.gita107cef-1+deb8u1 [60.0 kB] Get:40 http://deb.debian.org/debian/ jessie/main libssh2-1 amd64 1.4.3-4.1+deb8u1 [125 kB] Get:41 http://deb.debian.org/debian/ jessie/main libcurl3 amd64 7.38.0-4+deb8u11 [260 kB] Get:42 http://deb.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:43 http://deb.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:44 http://deb.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:45 http://deb.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:46 http://deb.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:47 http://deb.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:48 http://deb.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:49 http://deb.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:50 http://deb.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:51 http://deb.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:52 http://deb.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:53 http://deb.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:54 http://deb.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:55 http://deb.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:56 http://deb.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:57 http://deb.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:58 http://deb.debian.org/debian/ jessie/main libtcl8.5 amd64 8.5.17-1 [737 kB] Get:59 http://deb.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:60 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:61 http://deb.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:62 http://deb.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:63 http://deb.debian.org/debian/ jessie/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:64 http://deb.debian.org/debian/ jessie/main libtk8.5 amd64 8.5.17-1 [749 kB] Get:65 http://deb.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:66 http://deb.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:67 http://deb.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:68 http://deb.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:69 http://deb.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:70 http://deb.debian.org/debian/ jessie/main zip amd64 3.0-8 [228 kB] Get:71 http://deb.debian.org/debian/ jessie/main unzip amd64 6.0-16+deb8u3 [162 kB] Get:72 http://deb.debian.org/debian/ jessie/main xdg-utils all 1.1.0~rc1+git20111210-7.4+deb8u1 [65.1 kB] Get:73 http://deb.debian.org/debian/ jessie/main r-base-core amd64 3.1.1-1+deb8u1 [19.9 MB] Get:74 http://deb.debian.org/debian/ jessie/main littler amd64 0.2.1-1 [36.2 kB] Get:75 http://deb.debian.org/debian/ jessie/main r-cran-dbi amd64 0.3.1-1 [157 kB] Get:76 http://deb.debian.org/debian/ jessie/main r-cran-rsqlite amd64 0.11.4-3 [305 kB] Get:77 http://deb.debian.org/debian/ jessie/main r-bioc-biocgenerics all 0.10.0-1 [397 kB] Get:78 http://deb.debian.org/debian/ jessie/main r-bioc-biobase amd64 2.24.0-1 [2198 kB] Get:79 http://deb.debian.org/debian/ jessie/main r-bioc-iranges amd64 1.22.10-1 [1827 kB] Get:80 http://deb.debian.org/debian/ jessie/main r-bioc-genomeinfodb all 1.0.2-2 [221 kB] Get:81 http://deb.debian.org/debian/ jessie/main r-bioc-annotationdbi all 1.26.1-1 [4178 kB] Get:82 http://deb.debian.org/debian/ jessie/main r-cran-codetools all 0.2-9-1 [45.7 kB] Get:83 http://deb.debian.org/debian/ jessie/main r-cran-iterators all 1.0.7-1 [306 kB] Get:84 http://deb.debian.org/debian/ jessie/main r-cran-foreach all 1.4.2-1 [371 kB] Get:85 http://deb.debian.org/debian/ jessie/main r-cran-checkmate amd64 1.5.0-1 [255 kB] Get:86 http://deb.debian.org/debian/ jessie/main r-cran-bbmisc amd64 1.7-1 [264 kB] Get:87 http://deb.debian.org/debian/ jessie/main r-cran-brew amd64 1.0-6-1 [61.4 kB] Get:88 http://deb.debian.org/debian/ jessie/main r-cran-digest amd64 0.6.4-1 [81.5 kB] Get:89 http://deb.debian.org/debian/ jessie/main r-cran-pkgkitten all 0.1.2-1 [17.1 kB] Get:90 http://deb.debian.org/debian/ jessie/main r-cran-rcpp amd64 0.11.3-1 [2044 kB] Get:91 http://deb.debian.org/debian/ jessie/main r-cran-plyr amd64 1.8.1-2 [738 kB] Get:92 http://deb.debian.org/debian/ jessie/main r-cran-stringr all 0.6.2-2 [71.8 kB] Get:93 http://deb.debian.org/debian/ jessie/main r-cran-base64enc amd64 0.1-2-1 [19.9 kB] Get:94 http://deb.debian.org/debian/ jessie/main r-cran-sendmailr amd64 1.2-1-1 [29.0 kB] Get:95 http://deb.debian.org/debian/ jessie/main r-cran-fail amd64 1.2-1 [42.5 kB] Get:96 http://deb.debian.org/debian/ jessie/main r-cran-batchjobs amd64 1.4-1 [407 kB] Get:97 http://deb.debian.org/debian/ jessie/main r-bioc-biocparallel all 0.6.1-1 [321 kB] Get:98 http://deb.debian.org/debian/ jessie/main r-cran-xml amd64 3.98-1.1-1 [1809 kB] Get:99 http://deb.debian.org/debian/ jessie/main r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:100 http://deb.debian.org/debian/ jessie/main r-cran-rcurl amd64 1.95-4.3-1+deb8u1 [527 kB] Get:101 http://deb.debian.org/debian/ jessie/main r-bioc-biomart all 2.20.0-1 [365 kB] Get:102 http://deb.debian.org/debian/ jessie/main r-bioc-xvector amd64 0.4.0-1 [333 kB] Get:103 http://deb.debian.org/debian/ jessie/main r-bioc-biostrings amd64 2.32.1-1 [2251 kB] Get:104 http://deb.debian.org/debian/ jessie/main r-cran-dichromat all 2.0.0-3 [146 kB] Get:105 http://deb.debian.org/debian/ jessie/main r-cran-foreign amd64 0.8.61-1 [213 kB] Get:106 http://deb.debian.org/debian/ jessie/main r-cran-chron amd64 2.3-45-1 [102 kB] Get:107 http://deb.debian.org/debian/ jessie/main r-cran-lattice amd64 0.20-29-1 [713 kB] Get:108 http://deb.debian.org/debian/ jessie/main r-cran-cluster amd64 1.15.3-1 [475 kB] Get:109 http://deb.debian.org/debian/ jessie/main r-cran-survival amd64 2.37-7-1 [4443 kB] Get:110 http://deb.debian.org/debian/ jessie/main r-cran-formula all 1.1-2-1 [159 kB] Get:111 http://deb.debian.org/debian/ jessie/main r-cran-rpart amd64 4.1-8-1 [862 kB] Get:112 http://deb.debian.org/debian/ jessie/main r-cran-rcolorbrewer all 1.0-5-2 [25.5 kB] Get:113 http://deb.debian.org/debian/ jessie/main r-cran-latticeextra amd64 0.6-26-1 [2065 kB] Get:114 http://deb.debian.org/debian/ jessie/main r-cran-hmisc amd64 3.14-5-1 [1526 kB] Get:115 http://deb.debian.org/debian/ jessie/main r-cran-nnet amd64 7.3-8-1 [94.2 kB] Get:116 http://deb.debian.org/debian/ jessie/main r-cran-colorspace amd64 1.2-4-1 [348 kB] Get:117 http://deb.debian.org/debian/ jessie/main r-cran-munsell all 0.4.2-1 [116 kB] Get:118 http://deb.debian.org/debian/ jessie/main r-cran-labeling all 0.3-1 [39.9 kB] Get:119 http://deb.debian.org/debian/ jessie/main r-cran-scales all 0.2.4-1 [153 kB] Get:120 http://deb.debian.org/debian/ jessie/main r-bioc-genomicranges amd64 1.16.4-2 [1120 kB] Get:121 http://deb.debian.org/debian/ jessie/main r-bioc-rsamtools amd64 1.16.1-2 [3132 kB] Get:122 http://deb.debian.org/debian/ jessie/main r-bioc-bsgenome all 1.32.0-1 [763 kB] Get:123 http://deb.debian.org/debian/ jessie/main r-bioc-genomicalignments amd64 1.0.6-1 [1244 kB] Get:124 http://deb.debian.org/debian/ jessie/main r-bioc-rtracklayer amd64 1.24.2-1 [1776 kB] Get:125 http://deb.debian.org/debian/ jessie/main r-bioc-genomicfeatures all 1.16.3-1 [886 kB] Get:126 http://deb.debian.org/debian/ jessie/main r-bioc-variantannotation amd64 1.10.5-1 [1788 kB] Get:127 http://deb.debian.org/debian/ jessie/main r-bioc-biovizbase amd64 1.12.3-1 [2524 kB] Get:128 http://deb.debian.org/debian/ jessie/main r-cran-r.methodss3 amd64 1.6.1-1 [54.4 kB] Get:129 http://deb.debian.org/debian/ jessie/main r-cran-matrixstats amd64 0.10.3-1 [206 kB] Get:130 http://deb.debian.org/debian/ jessie/main r-bioc-gviz all 1.8.4-1 [3111 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.5 MB in 5s (15.0 MB/s) Selecting previously unselected package libssl1.0.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7449 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libnettle4:amd64. 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Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../r-bioc-iranges_1.22.10-1_amd64.deb ... Unpacking r-bioc-iranges (1.22.10-1) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../r-bioc-genomeinfodb_1.0.2-2_all.deb ... Unpacking r-bioc-genomeinfodb (1.0.2-2) ... Selecting previously unselected package r-bioc-annotationdbi. Preparing to unpack .../r-bioc-annotationdbi_1.26.1-1_all.deb ... Unpacking r-bioc-annotationdbi (1.26.1-1) ... Selecting previously unselected package r-cran-codetools. Preparing to unpack .../r-cran-codetools_0.2-9-1_all.deb ... Unpacking r-cran-codetools (0.2-9-1) ... Selecting previously unselected package r-cran-iterators. Preparing to unpack .../r-cran-iterators_1.0.7-1_all.deb ... Unpacking r-cran-iterators (1.0.7-1) ... Selecting previously unselected package r-cran-foreach. Preparing to unpack .../r-cran-foreach_1.4.2-1_all.deb ... Unpacking r-cran-foreach (1.4.2-1) ... 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Preparing to unpack .../r-cran-plyr_1.8.1-2_amd64.deb ... Unpacking r-cran-plyr (1.8.1-2) ... Selecting previously unselected package r-cran-stringr. Preparing to unpack .../r-cran-stringr_0.6.2-2_all.deb ... Unpacking r-cran-stringr (0.6.2-2) ... Selecting previously unselected package r-cran-base64enc. Preparing to unpack .../r-cran-base64enc_0.1-2-1_amd64.deb ... Unpacking r-cran-base64enc (0.1-2-1) ... Selecting previously unselected package r-cran-sendmailr. Preparing to unpack .../r-cran-sendmailr_1.2-1-1_amd64.deb ... Unpacking r-cran-sendmailr (1.2-1-1) ... Selecting previously unselected package r-cran-fail. Preparing to unpack .../r-cran-fail_1.2-1_amd64.deb ... Unpacking r-cran-fail (1.2-1) ... Selecting previously unselected package r-cran-batchjobs. Preparing to unpack .../r-cran-batchjobs_1.4-1_amd64.deb ... Unpacking r-cran-batchjobs (1.4-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../r-bioc-biocparallel_0.6.1-1_all.deb ... Unpacking r-bioc-biocparallel (0.6.1-1) ... Selecting previously unselected package r-cran-xml. Preparing to unpack .../r-cran-xml_3.98-1.1-1_amd64.deb ... Unpacking r-cran-xml (3.98-1.1-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../r-cran-bitops_1.0-6-1_amd64.deb ... Unpacking r-cran-bitops (1.0-6-1) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../r-cran-rcurl_1.95-4.3-1+deb8u1_amd64.deb ... Unpacking r-cran-rcurl (1.95-4.3-1+deb8u1) ... Selecting previously unselected package r-bioc-biomart. Preparing to unpack .../r-bioc-biomart_2.20.0-1_all.deb ... Unpacking r-bioc-biomart (2.20.0-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../r-bioc-xvector_0.4.0-1_amd64.deb ... Unpacking r-bioc-xvector (0.4.0-1) ... Selecting previously unselected package r-bioc-biostrings. Preparing to unpack .../r-bioc-biostrings_2.32.1-1_amd64.deb ... Unpacking r-bioc-biostrings (2.32.1-1) ... Selecting previously unselected package r-cran-dichromat. Preparing to unpack .../r-cran-dichromat_2.0.0-3_all.deb ... Unpacking r-cran-dichromat (2.0.0-3) ... Selecting previously unselected package r-cran-foreign. Preparing to unpack .../r-cran-foreign_0.8.61-1_amd64.deb ... Unpacking r-cran-foreign (0.8.61-1) ... Selecting previously unselected package r-cran-chron. Preparing to unpack .../r-cran-chron_2.3-45-1_amd64.deb ... Unpacking r-cran-chron (2.3-45-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../r-cran-lattice_0.20-29-1_amd64.deb ... Unpacking r-cran-lattice (0.20-29-1) ... Selecting previously unselected package r-cran-cluster. Preparing to unpack .../r-cran-cluster_1.15.3-1_amd64.deb ... Unpacking r-cran-cluster (1.15.3-1) ... Selecting previously unselected package r-cran-survival. Preparing to unpack .../r-cran-survival_2.37-7-1_amd64.deb ... Unpacking r-cran-survival (2.37-7-1) ... Selecting previously unselected package r-cran-formula. Preparing to unpack .../r-cran-formula_1.1-2-1_all.deb ... Unpacking r-cran-formula (1.1-2-1) ... Selecting previously unselected package r-cran-rpart. Preparing to unpack .../r-cran-rpart_4.1-8-1_amd64.deb ... Unpacking r-cran-rpart (4.1-8-1) ... Selecting previously unselected package r-cran-rcolorbrewer. Preparing to unpack .../r-cran-rcolorbrewer_1.0-5-2_all.deb ... Unpacking r-cran-rcolorbrewer (1.0-5-2) ... Selecting previously unselected package r-cran-latticeextra. Preparing to unpack .../r-cran-latticeextra_0.6-26-1_amd64.deb ... Unpacking r-cran-latticeextra (0.6-26-1) ... Selecting previously unselected package r-cran-hmisc. Preparing to unpack .../r-cran-hmisc_3.14-5-1_amd64.deb ... Unpacking r-cran-hmisc (3.14-5-1) ... Selecting previously unselected package r-cran-nnet. Preparing to unpack .../r-cran-nnet_7.3-8-1_amd64.deb ... Unpacking r-cran-nnet (7.3-8-1) ... Selecting previously unselected package r-cran-colorspace. Preparing to unpack .../r-cran-colorspace_1.2-4-1_amd64.deb ... Unpacking r-cran-colorspace (1.2-4-1) ... Selecting previously unselected package r-cran-munsell. Preparing to unpack .../r-cran-munsell_0.4.2-1_all.deb ... Unpacking r-cran-munsell (0.4.2-1) ... Selecting previously unselected package r-cran-labeling. Preparing to unpack .../r-cran-labeling_0.3-1_all.deb ... Unpacking r-cran-labeling (0.3-1) ... Selecting previously unselected package r-cran-scales. Preparing to unpack .../r-cran-scales_0.2.4-1_all.deb ... Unpacking r-cran-scales (0.2.4-1) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../r-bioc-genomicranges_1.16.4-2_amd64.deb ... Unpacking r-bioc-genomicranges (1.16.4-2) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../r-bioc-rsamtools_1.16.1-2_amd64.deb ... Unpacking r-bioc-rsamtools (1.16.1-2) ... Selecting previously unselected package r-bioc-bsgenome. Preparing to unpack .../r-bioc-bsgenome_1.32.0-1_all.deb ... Unpacking r-bioc-bsgenome (1.32.0-1) ... Selecting previously unselected package r-bioc-genomicalignments. Preparing to unpack .../r-bioc-genomicalignments_1.0.6-1_amd64.deb ... Unpacking r-bioc-genomicalignments (1.0.6-1) ... Selecting previously unselected package r-bioc-rtracklayer. Preparing to unpack .../r-bioc-rtracklayer_1.24.2-1_amd64.deb ... Unpacking r-bioc-rtracklayer (1.24.2-1) ... Selecting previously unselected package r-bioc-genomicfeatures. Preparing to unpack .../r-bioc-genomicfeatures_1.16.3-1_all.deb ... Unpacking r-bioc-genomicfeatures (1.16.3-1) ... Selecting previously unselected package r-bioc-variantannotation. Preparing to unpack .../r-bioc-variantannotation_1.10.5-1_amd64.deb ... Unpacking r-bioc-variantannotation (1.10.5-1) ... Selecting previously unselected package r-bioc-biovizbase. Preparing to unpack .../r-bioc-biovizbase_1.12.3-1_amd64.deb ... Unpacking r-bioc-biovizbase (1.12.3-1) ... Selecting previously unselected package r-cran-r.methodss3. Preparing to unpack .../r-cran-r.methodss3_1.6.1-1_amd64.deb ... Unpacking r-cran-r.methodss3 (1.6.1-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../r-cran-matrixstats_0.10.3-1_amd64.deb ... Unpacking r-cran-matrixstats (0.10.3-1) ... Selecting previously unselected package r-bioc-gviz. Preparing to unpack .../r-bioc-gviz_1.8.4-1_all.deb ... Unpacking r-bioc-gviz (1.8.4-1) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Setting up libcurl3:amd64 (7.38.0-4+deb8u11) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libthai-data (0.1.21-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libtcl8.5:amd64 (8.5.17-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.5:amd64 (8.5.17-1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpaper-utils (1.1.24+nmu4) ... Setting up zip (3.0-8) ... Setting up unzip (6.0-16+deb8u3) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Setting up r-base-core (3.1.1-1+deb8u1) ... Creating config file /etc/R/Renviron with new version Setting up littler (0.2.1-1) ... Setting up r-cran-dbi (0.3.1-1) ... Setting up r-cran-rsqlite (0.11.4-3) ... Setting up r-bioc-biocgenerics (0.10.0-1) ... Setting up r-bioc-biobase (2.24.0-1) ... Setting up r-bioc-iranges (1.22.10-1) ... Setting up r-bioc-genomeinfodb (1.0.2-2) ... Setting up r-bioc-annotationdbi (1.26.1-1) ... Setting up r-cran-codetools (0.2-9-1) ... Setting up r-cran-iterators (1.0.7-1) ... Setting up r-cran-foreach (1.4.2-1) ... Setting up r-cran-checkmate (1.5.0-1) ... Setting up r-cran-bbmisc (1.7-1) ... Setting up r-cran-brew (1.0-6-1) ... Setting up r-cran-digest (0.6.4-1) ... Setting up r-cran-pkgkitten (0.1.2-1) ... Setting up r-cran-rcpp (0.11.3-1) ... Setting up r-cran-plyr (1.8.1-2) ... Setting up r-cran-stringr (0.6.2-2) ... Setting up r-cran-base64enc (0.1-2-1) ... Setting up r-cran-sendmailr (1.2-1-1) ... Setting up r-cran-fail (1.2-1) ... Setting up r-cran-batchjobs (1.4-1) ... Setting up r-bioc-biocparallel (0.6.1-1) ... Setting up r-cran-xml (3.98-1.1-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-cran-rcurl (1.95-4.3-1+deb8u1) ... Setting up r-bioc-biomart (2.20.0-1) ... Setting up r-bioc-xvector (0.4.0-1) ... Setting up r-bioc-biostrings (2.32.1-1) ... Setting up r-cran-dichromat (2.0.0-3) ... Setting up r-cran-foreign (0.8.61-1) ... Setting up r-cran-chron (2.3-45-1) ... Setting up r-cran-lattice (0.20-29-1) ... Setting up r-cran-cluster (1.15.3-1) ... Setting up r-cran-survival (2.37-7-1) ... Setting up r-cran-formula (1.1-2-1) ... Setting up r-cran-rpart (4.1-8-1) ... Setting up r-cran-rcolorbrewer (1.0-5-2) ... Setting up r-cran-latticeextra (0.6-26-1) ... Setting up r-cran-hmisc (3.14-5-1) ... Setting up r-cran-nnet (7.3-8-1) ... Setting up r-cran-colorspace (1.2-4-1) ... Setting up r-cran-munsell (0.4.2-1) ... Setting up r-cran-labeling (0.3-1) ... Setting up r-cran-scales (0.2.4-1) ... Setting up r-bioc-genomicranges (1.16.4-2) ... Setting up r-bioc-rsamtools (1.16.1-2) ... Setting up r-bioc-bsgenome (1.32.0-1) ... Setting up r-bioc-genomicalignments (1.0.6-1) ... Setting up r-bioc-rtracklayer (1.24.2-1) ... Setting up r-bioc-genomicfeatures (1.16.3-1) ... Setting up r-bioc-variantannotation (1.10.5-1) ... Setting up r-bioc-biovizbase (1.12.3-1) ... Setting up r-cran-r.methodss3 (1.6.1-1) ... Setting up r-cran-matrixstats (0.10.3-1) ... Setting up r-bioc-gviz (1.8.4-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-y', 'install', 'r-bioc-gviz'] 0m23.1s INFO: Running scripts post_install 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_install_exceptions'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_install_exceptions'] 0m23.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 0m23.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 0m23.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpczgoghnz to stretch 0m23.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m23.8s INFO: Running scripts pre_distupgrade 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_exceptions'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_exceptions'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', 'update'] 0m26.3s DUMP: Ign http://deb.debian.org stretch InRelease Get:1 http://deb.debian.org stretch Release.gpg [3177 B] Get:2 http://deb.debian.org stretch Release [118 kB] Get:3 http://deb.debian.org stretch/main amd64 Packages [7080 kB] Get:4 http://deb.debian.org stretch/main Translation-en [5377 kB] Fetched 12.6 MB in 1s (8245 kB/s) Reading package lists... W: There is no public key available for the following key IDs: 648ACFD622F3D138 NO_PUBKEY 0E98404D386FA1D9 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', 'update'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-yf', 'dist-upgrade'] 1m11.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgnutls-deb0-28 libhogweed2 libnettle4 libpng12-0 libssl1.0.0 libtcl8.5 libtk8.5 r-cran-foreign r-cran-nnet r-cran-r.methodss3 Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: ca-certificates fonts-font-awesome fonts-mathjax gcc-6-base gnupg-agent init-system-helpers libapparmor1 libapt-pkg5.0 libassuan0 libbsd0 libcap-ng0 libfdisk1 libgnutls30 libhogweed4 libicu57 libidn2-0 libip4tc0 libjs-bootstrap libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker libksba8 libldap-common liblz4-1 libnettle6 libnghttp2-14 libnpth0 libpng16-16 libprocps6 libpsl5 libreadline7 libseccomp2 libssl1.0.2 libssl1.1 libtcl8.6 libtk8.6 libunistring0 openssl pinentry-curses r-bioc-annotationhub r-bioc-biocinstaller r-bioc-ensembldb r-bioc-interactivedisplaybase r-bioc-s4vectors r-bioc-summarizedexperiment r-cran-acepack r-cran-assertthat r-cran-backports r-cran-curl r-cran-data.table r-cran-evaluate r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltable r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-memoise r-cran-mime r-cran-openssl r-cran-r6 r-cran-reshape2 r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-tibble r-cran-viridis r-cran-xtable r-cran-yaml The following packages will be upgraded: acl adduser apt base-files base-passwd bash bsdutils coreutils dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dmsetup dpkg e2fslibs e2fsprogs findutils fontconfig fontconfig-config fonts-dejavu-core gnupg gpgv grep gzip hostname init initscripts insserv libacl1 libattr1 libaudit-common libaudit1 libblas-common libblas3 libblkid1 libbz2-1.0 libc-bin libc6 libcairo2 libcap2 libcap2-bin libcomerr2 libcryptsetup4 libcurl3 libdatrie1 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgcc1 libgcrypt20 libgfortran3 libglib2.0-0 libgmp10 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libidn11 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 liblocale-gettext-perl liblzma5 libmount1 libncurses5 libncursesw5 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3 libpixman-1-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsm6 libsmartcols1 libsqlite3-0 libss2 libssh2-1 libstdc++6 libsystemd0 libtasn1-6 libtcl8.5 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff5 libtinfo5 libtk8.5 libudev1 libusb-0.1-4 libustr-1.0-1 libuuid1 libx11-6 libx11-data libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxt6 littler login lsb-base mawk mount multiarch-support ncurses-base ncurses-bin passwd perl-base procps r-base-core r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-variantannotation r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-checkmate r-cran-chron r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-digest r-cran-fail r-cran-foreach r-cran-foreign r-cran-formula r-cran-hmisc r-cran-iterators r-cran-lattice r-cran-latticeextra r-cran-matrixstats r-cran-munsell r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-stringr r-cran-survival r-cran-xml readline-common sed sensible-utils startpar systemd systemd-sysv sysv-rc sysvinit-utils tar tzdata ucf udev unzip util-linux x11-common xdg-utils zip zlib1g 214 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 204 MB of archives. After this operation, 209 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian/ stretch/main libc6 amd64 2.24-11+deb9u4 [2694 kB] Get:2 http://deb.debian.org/debian/ stretch/main libc-bin amd64 2.24-11+deb9u4 [782 kB] Get:3 http://deb.debian.org/debian/ stretch/main gcc-6-base amd64 6.3.0-18+deb9u1 [180 kB] Get:4 http://deb.debian.org/debian/ stretch/main libgcc1 amd64 1:6.3.0-18+deb9u1 [38.0 kB] Get:5 http://deb.debian.org/debian/ stretch/main libaudit-common all 1:2.6.7-2 [18.1 kB] Get:6 http://deb.debian.org/debian/ stretch/main libcap-ng0 amd64 0.7.7-3+b1 [13.8 kB] Get:7 http://deb.debian.org/debian/ stretch/main libaudit1 amd64 1:2.6.7-2 [51.3 kB] Get:8 http://deb.debian.org/debian/ stretch/main libtext-charwidth-perl amd64 0.04-7+b5 [9870 B] Get:9 http://deb.debian.org/debian/ stretch/main libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:10 http://deb.debian.org/debian/ stretch/main perl-base amd64 5.24.1-3+deb9u7 [1346 kB] Get:11 http://deb.debian.org/debian/ stretch/main liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:12 http://deb.debian.org/debian/ stretch/main libtext-wrapi18n-perl all 0.06-7.1 [8644 B] Get:13 http://deb.debian.org/debian/ stretch/main debconf-i18n all 1.5.61 [205 kB] Get:14 http://deb.debian.org/debian/ stretch/main debconf all 1.5.61 [159 kB] Get:15 http://deb.debian.org/debian/ stretch/main libpam0g amd64 1.1.8-3.6 [125 kB] Get:16 http://deb.debian.org/debian/ stretch/main libpcre3 amd64 2:8.39-3 [337 kB] Get:17 http://deb.debian.org/debian/ stretch/main libselinux1 amd64 2.6-3+b3 [101 kB] Get:18 http://deb.debian.org/debian/ stretch/main libsepol1 amd64 2.6-2 [241 kB] Get:19 http://deb.debian.org/debian/ stretch/main libsemanage-common all 2.6-2 [26.9 kB] Get:20 http://deb.debian.org/debian/ stretch/main libsemanage1 amd64 2.6-2 [103 kB] Get:21 http://deb.debian.org/debian/ stretch/main libbz2-1.0 amd64 1.0.6-8.1 [43.5 kB] Get:22 http://deb.debian.org/debian/ stretch/main libustr-1.0-1 amd64 1.0.4-6 [76.3 kB] Get:23 http://deb.debian.org/debian/ stretch/main libpam-modules-bin amd64 1.1.8-3.6 [105 kB] Get:24 http://deb.debian.org/debian/ stretch/main libpam-modules amd64 1.1.8-3.6 [308 kB] Get:25 http://deb.debian.org/debian/ stretch/main passwd amd64 1:4.4-4.1 [996 kB] Get:26 http://deb.debian.org/debian/ stretch/main libuuid1 amd64 2.29.2-1+deb9u1 [70.1 kB] Get:27 http://deb.debian.org/debian/ stretch/main libblkid1 amd64 2.29.2-1+deb9u1 [168 kB] Get:28 http://deb.debian.org/debian/ stretch/main libfdisk1 amd64 2.29.2-1+deb9u1 [203 kB] Get:29 http://deb.debian.org/debian/ stretch/main libtinfo5 amd64 6.0+20161126-1+deb9u2 [300 kB] Get:30 http://deb.debian.org/debian/ stretch/main libncursesw5 amd64 6.0+20161126-1+deb9u2 [115 kB] Get:31 http://deb.debian.org/debian/ stretch/main libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:32 http://deb.debian.org/debian/ stretch/main libsmartcols1 amd64 2.29.2-1+deb9u1 [126 kB] Get:33 http://deb.debian.org/debian/ stretch/main insserv amd64 1.14.0-5.4+b1 [61.8 kB] Get:34 http://deb.debian.org/debian/ stretch/main startpar amd64 0.59-3.1 [22.5 kB] Get:35 http://deb.debian.org/debian/ stretch/main base-files amd64 9.9+deb9u13 [67.6 kB] Get:36 http://deb.debian.org/debian/ stretch/main init-system-helpers all 1.48 [44.0 kB] Get:37 http://deb.debian.org/debian/ stretch/main util-linux amd64 2.29.2-1+deb9u1 [981 kB] Get:38 http://deb.debian.org/debian/ stretch/main sysvinit-utils amd64 2.88dsf-59.9 [68.4 kB] Get:39 http://deb.debian.org/debian/ stretch/main initscripts amd64 2.88dsf-59.9 [84.5 kB] Get:40 http://deb.debian.org/debian/ stretch/main sysv-rc all 2.88dsf-59.9 [67.4 kB] Get:41 http://deb.debian.org/debian/ stretch/main mount amd64 2.29.2-1+deb9u1 [189 kB] Get:42 http://deb.debian.org/debian/ stretch/main sensible-utils all 0.0.9+deb9u1 [10.8 kB] Get:43 http://deb.debian.org/debian/ stretch/main debianutils amd64 4.8.1.1 [100 kB] Get:44 http://deb.debian.org/debian/ stretch/main libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:45 http://deb.debian.org/debian/ stretch/main libgpg-error0 amd64 1.26-2 [112 kB] Get:46 http://deb.debian.org/debian/ stretch/main libgcrypt20 amd64 1.7.6-2+deb9u3 [524 kB] Get:47 http://deb.debian.org/debian/ stretch/main libip4tc0 amd64 1.6.0+snapshot20161117-6 [67.8 kB] Get:48 http://deb.debian.org/debian/ stretch/main liblz4-1 amd64 0.0~r131-2+b1 [33.3 kB] Get:49 http://deb.debian.org/debian/ stretch/main libmount1 amd64 2.29.2-1+deb9u1 [178 kB] Get:50 http://deb.debian.org/debian/ stretch/main libseccomp2 amd64 2.3.1-2.1+deb9u1 [40.7 kB] Get:51 http://deb.debian.org/debian/ stretch/main libudev1 amd64 232-25+deb9u12 [126 kB] Get:52 http://deb.debian.org/debian/ stretch/main libsystemd0 amd64 232-25+deb9u12 [282 kB] Get:53 http://deb.debian.org/debian/ stretch/main systemd amd64 232-25+deb9u12 [2469 kB] Get:54 http://deb.debian.org/debian/ stretch/main udev amd64 232-25+deb9u12 [1113 kB] Get:55 http://deb.debian.org/debian/ stretch/main systemd-sysv amd64 232-25+deb9u12 [82.5 kB] Get:56 http://deb.debian.org/debian/ stretch/main libattr1 amd64 1:2.4.47-2+b2 [18.4 kB] Get:57 http://deb.debian.org/debian/ stretch/main acl amd64 2.2.52-3+b1 [59.5 kB] Get:58 http://deb.debian.org/debian/ stretch/main libacl1 amd64 2.2.52-3+b1 [28.1 kB] Get:59 http://deb.debian.org/debian/ stretch/main libkmod2 amd64 23-2 [48.1 kB] Get:60 http://deb.debian.org/debian/ stretch/main adduser all 3.115 [241 kB] Get:61 http://deb.debian.org/debian/ stretch/main libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:62 http://deb.debian.org/debian/ stretch/main procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:63 http://deb.debian.org/debian/ stretch/main libcap2 amd64 1:2.25-1 [16.8 kB] Get:64 http://deb.debian.org/debian/ stretch/main libdevmapper1.02.1 amd64 2:1.02.137-2 [170 kB] Get:65 http://deb.debian.org/debian/ stretch/main dmsetup amd64 2:1.02.137-2 [107 kB] Get:66 http://deb.debian.org/debian/ stretch/main libcryptsetup4 amd64 2:1.7.3-4 [109 kB] Get:67 http://deb.debian.org/debian/ stretch/main libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:68 http://deb.debian.org/debian/ stretch/main liblzma5 amd64 5.2.2-1.2+b1 [234 kB] Get:69 http://deb.debian.org/debian/ stretch/main lsb-base all 9.20161125 [27.9 kB] Get:70 http://deb.debian.org/debian/ stretch/main coreutils amd64 8.26-3 [2870 kB] Get:71 http://deb.debian.org/debian/ stretch/main init amd64 1.48 [12.0 kB] Get:72 http://deb.debian.org/debian/ stretch/main bash amd64 4.4-5 [1427 kB] Get:73 http://deb.debian.org/debian/ stretch/main bsdutils amd64 1:2.29.2-1+deb9u1 [112 kB] Get:74 http://deb.debian.org/debian/ stretch/main tar amd64 1.29b-1.1 [759 kB] Get:75 http://deb.debian.org/debian/ stretch/main dpkg amd64 1.18.25 [2115 kB] Get:76 http://deb.debian.org/debian/ stretch/main dash amd64 0.5.8-2.4 [109 kB] Get:77 http://deb.debian.org/debian/ stretch/main diffutils amd64 1:3.5-3 [314 kB] Get:78 http://deb.debian.org/debian/ stretch/main e2fslibs amd64 1.43.4-2+deb9u1 [208 kB] Get:79 http://deb.debian.org/debian/ stretch/main e2fsprogs amd64 1.43.4-2+deb9u1 [947 kB] Get:80 http://deb.debian.org/debian/ stretch/main findutils amd64 4.6.0+git+20161106-2 [622 kB] Get:81 http://deb.debian.org/debian/ stretch/main grep amd64 2.27-2 [382 kB] Get:82 http://deb.debian.org/debian/ stretch/main gzip amd64 1.6-5+b1 [114 kB] Get:83 http://deb.debian.org/debian/ stretch/main hostname amd64 3.18+b1 [14.9 kB] Get:84 http://deb.debian.org/debian/ stretch/main login amd64 1:4.4-4.1 [790 kB] Get:85 http://deb.debian.org/debian/ stretch/main ncurses-bin amd64 6.0+20161126-1+deb9u2 [366 kB] Get:86 http://deb.debian.org/debian/ stretch/main sed amd64 4.4-1 [280 kB] Get:87 http://deb.debian.org/debian/ stretch/main libstdc++6 amd64 6.3.0-18+deb9u1 [396 kB] Get:88 http://deb.debian.org/debian/ stretch/main zlib1g amd64 1:1.2.8.dfsg-5 [87.5 kB] Get:89 http://deb.debian.org/debian/ stretch/main debian-archive-keyring all 2017.5+deb9u1 [73.9 kB] Get:90 http://deb.debian.org/debian/ stretch/main libapt-pkg5.0 amd64 1.4.10 [917 kB] Get:91 http://deb.debian.org/debian/ stretch/main apt amd64 1.4.10 [1232 kB] Get:92 http://deb.debian.org/debian/ stretch/main gpgv amd64 2.1.18-8~deb9u4 [481 kB] Get:93 http://deb.debian.org/debian/ stretch/main libdebconfclient0 amd64 0.227 [47.8 kB] Get:94 http://deb.debian.org/debian/ stretch/main base-passwd amd64 3.5.43 [57.7 kB] Get:95 http://deb.debian.org/debian/ stretch/main ncurses-base all 6.0+20161126-1+deb9u2 [238 kB] Get:96 http://deb.debian.org/debian/ stretch/main mawk amd64 1.3.3-17+b3 [84.6 kB] Get:97 http://deb.debian.org/debian/ stretch/main libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:98 http://deb.debian.org/debian/ stretch/main libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:99 http://deb.debian.org/debian/ stretch/main libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:100 http://deb.debian.org/debian/ stretch/main ucf all 3.0036 [70.2 kB] Get:101 http://deb.debian.org/debian/ stretch/main fonts-dejavu-core all 2.37-1 [1068 kB] Get:102 http://deb.debian.org/debian/ stretch/main fontconfig-config all 2.11.0-6.7 [271 kB] Get:103 http://deb.debian.org/debian/ stretch/main libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:104 http://deb.debian.org/debian/ stretch/main fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:105 http://deb.debian.org/debian/ stretch/main libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:106 http://deb.debian.org/debian/ stretch/main libjs-jquery-metadata all 11-3 [7188 B] Get:107 http://deb.debian.org/debian/ stretch/main libjs-jquery-tablesorter all 11-3 [43.9 kB] Get:108 http://deb.debian.org/debian/ stretch/main libjs-twitter-bootstrap all 2.0.2+dfsg-10 [98.8 kB] Get:109 http://deb.debian.org/debian/ stretch/main libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-1 [31.5 kB] Get:110 http://deb.debian.org/debian/ stretch/main libassuan0 amd64 2.4.3-2 [42.5 kB] Get:111 http://deb.debian.org/debian/ stretch/main pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:112 http://deb.debian.org/debian/ stretch/main libnpth0 amd64 1.3-1 [14.6 kB] Get:113 http://deb.debian.org/debian/ stretch/main readline-common all 7.0-3 [70.4 kB] Get:114 http://deb.debian.org/debian/ stretch/main libreadline7 amd64 7.0-3 [151 kB] Get:115 http://deb.debian.org/debian/ stretch/main gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:116 http://deb.debian.org/debian/ stretch/main libksba8 amd64 1.3.5-2 [99.7 kB] Get:117 http://deb.debian.org/debian/ stretch/main libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:118 http://deb.debian.org/debian/ stretch/main gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:119 http://deb.debian.org/debian/ stretch/main libslang2 amd64 2.3.1-5 [503 kB] Get:120 http://deb.debian.org/debian/ stretch/main libcomerr2 amd64 1.43.4-2+deb9u1 [63.5 kB] Get:121 http://deb.debian.org/debian/ stretch/main libpam-runtime all 1.1.8-3.6 [212 kB] Get:122 http://deb.debian.org/debian/ stretch/main libss2 amd64 1.43.4-2+deb9u1 [67.8 kB] Get:123 http://deb.debian.org/debian/ stretch/main multiarch-support amd64 2.24-11+deb9u4 [201 kB] Get:124 http://deb.debian.org/debian/ stretch/main tzdata all 2020a-0+deb9u1 [278 kB] Get:125 http://deb.debian.org/debian/ stretch/main libdb5.3 amd64 5.3.28-12+deb9u1 [679 kB] Get:126 http://deb.debian.org/debian/ stretch/main libusb-0.1-4 amd64 2:0.1.12-30 [22.9 kB] Get:127 http://deb.debian.org/debian/ stretch/main libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:128 http://deb.debian.org/debian/ stretch/main libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:129 http://deb.debian.org/debian/ stretch/main libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:130 http://deb.debian.org/debian/ stretch/main libnettle6 amd64 3.3-1+b2 [192 kB] Get:131 http://deb.debian.org/debian/ stretch/main libhogweed4 amd64 3.3-1+b2 [136 kB] Get:132 http://deb.debian.org/debian/ stretch/main libffi6 amd64 3.2.1-6 [20.4 kB] Get:133 http://deb.debian.org/debian/ stretch/main libp11-kit0 amd64 0.23.3-2 [111 kB] Get:134 http://deb.debian.org/debian/ stretch/main libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:135 http://deb.debian.org/debian/ stretch/main libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:136 http://deb.debian.org/debian/ stretch/main libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:137 http://deb.debian.org/debian/ stretch/main libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:138 http://deb.debian.org/debian/ stretch/main libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:139 http://deb.debian.org/debian/ stretch/main libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:140 http://deb.debian.org/debian/ stretch/main libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:141 http://deb.debian.org/debian/ stretch/main libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:142 http://deb.debian.org/debian/ stretch/main libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:143 http://deb.debian.org/debian/ stretch/main libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:144 http://deb.debian.org/debian/ stretch/main libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:145 http://deb.debian.org/debian/ stretch/main libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:146 http://deb.debian.org/debian/ stretch/main libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:147 http://deb.debian.org/debian/ stretch/main openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:148 http://deb.debian.org/debian/ stretch/main ca-certificates all 20200601~deb9u1 [160 kB] Get:149 http://deb.debian.org/debian/ stretch/main fonts-font-awesome all 4.7.0~dfsg-1 [514 kB] Get:150 http://deb.debian.org/debian/ stretch/main fonts-mathjax all 2.7.0-2 [960 kB] Get:151 http://deb.debian.org/debian/ stretch/main libblas-common amd64 3.7.0-2 [14.2 kB] Get:152 http://deb.debian.org/debian/ stretch/main libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:153 http://deb.debian.org/debian/ stretch/main libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:154 http://deb.debian.org/debian/ stretch/main libblas3 amd64 3.7.0-2 [155 kB] Get:155 http://deb.debian.org/debian/ stretch/main libbsd0 amd64 0.8.3-1 [83.0 kB] Get:156 http://deb.debian.org/debian/ stretch/main libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:157 http://deb.debian.org/debian/ stretch/main libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:158 http://deb.debian.org/debian/ stretch/main libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:159 http://deb.debian.org/debian/ stretch/main libxcb1 amd64 1.12-1 [133 kB] Get:160 http://deb.debian.org/debian/ stretch/main libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:161 http://deb.debian.org/debian/ stretch/main libxcb-render0 amd64 1.12-1 [105 kB] Get:162 http://deb.debian.org/debian/ stretch/main libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:163 http://deb.debian.org/debian/ stretch/main libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:164 http://deb.debian.org/debian/ stretch/main libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:165 http://deb.debian.org/debian/ stretch/main libcairo2 amd64 1.14.8-1 [771 kB] Get:166 http://deb.debian.org/debian/ stretch/main libcap2-bin amd64 1:2.25-1 [26.5 kB] Get:167 http://deb.debian.org/debian/ stretch/main libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:168 http://deb.debian.org/debian/ stretch/main libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:169 http://deb.debian.org/debian/ stretch/main libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:170 http://deb.debian.org/debian/ stretch/main libpsl5 amd64 0.17.0-3 [41.8 kB] Get:171 http://deb.debian.org/debian/ stretch/main librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:172 http://deb.debian.org/debian/ stretch/main libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:173 http://deb.debian.org/debian/ stretch/main libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:174 http://deb.debian.org/debian/ stretch/main libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:175 http://deb.debian.org/debian/ stretch/main libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:176 http://deb.debian.org/debian/ stretch/main libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:177 http://deb.debian.org/debian/ stretch/main libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:178 http://deb.debian.org/debian/ stretch/main libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:179 http://deb.debian.org/debian/ stretch/main x11-common all 1:7.7+19 [251 kB] Get:180 http://deb.debian.org/debian/ stretch/main libice6 amd64 2:1.0.9-2 [58.7 kB] Get:181 http://deb.debian.org/debian/ stretch/main libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:182 http://deb.debian.org/debian/ stretch/main libjs-bootstrap all 3.3.7+dfsg-2+deb9u2 [277 kB] Get:183 http://deb.debian.org/debian/ stretch/main libjs-es5-shim all 4.5.9-1 [41.3 kB] Get:184 http://deb.debian.org/debian/ stretch/main libjs-highlight.js all 8.2+ds-5 [165 kB] Get:185 http://deb.debian.org/debian/ stretch/main libjs-jquery-datatables all 1.10.13+dfsg-2 [135 kB] Get:186 http://deb.debian.org/debian/ stretch/main libjs-jquery-ui all 1.12.1+dfsg-4 [232 kB] Get:187 http://deb.debian.org/debian/ stretch/main libjs-json all 0~20160510-1 [24.2 kB] Get:188 http://deb.debian.org/debian/ stretch/main liblapack3 amd64 3.7.0-2 [2141 kB] Get:189 http://deb.debian.org/debian/ stretch/main libthai-data all 0.1.26-1 [166 kB] Get:190 http://deb.debian.org/debian/ stretch/main libthai0 amd64 0.1.26-1 [52.1 kB] Get:191 http://deb.debian.org/debian/ stretch/main libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:192 http://deb.debian.org/debian/ stretch/main libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:193 http://deb.debian.org/debian/ stretch/main libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:194 http://deb.debian.org/debian/ stretch/main libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:195 http://deb.debian.org/debian/ stretch/main libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:196 http://deb.debian.org/debian/ stretch/main libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:197 http://deb.debian.org/debian/ stretch/main libtcl8.5 amd64 8.5.19-2+b1 [743 kB] Get:198 http://deb.debian.org/debian/ stretch/main libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:199 http://deb.debian.org/debian/ stretch/main libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:200 http://deb.debian.org/debian/ stretch/main libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:201 http://deb.debian.org/debian/ stretch/main libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:202 http://deb.debian.org/debian/ stretch/main libtk8.5 amd64 8.5.19-1+b1 [750 kB] Get:203 http://deb.debian.org/debian/ stretch/main libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:204 http://deb.debian.org/debian/ stretch/main libxt6 amd64 1:1.1.5-1 [188 kB] Get:205 http://deb.debian.org/debian/ stretch/main zip amd64 3.0-11+b1 [234 kB] Get:206 http://deb.debian.org/debian/ stretch/main unzip amd64 6.0-21+deb9u2 [172 kB] Get:207 http://deb.debian.org/debian/ stretch/main xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:208 http://deb.debian.org/debian/ stretch/main r-base-core amd64 3.3.3-1 [21.2 MB] Get:209 http://deb.debian.org/debian/ stretch/main littler all 0.3.1-1 [11.7 kB] Get:210 http://deb.debian.org/debian/ stretch/main r-cran-littler amd64 0.3.1-1 [59.1 kB] Get:211 http://deb.debian.org/debian/ stretch/main r-bioc-biocgenerics all 0.20.0-1 [483 kB] Get:212 http://deb.debian.org/debian/ stretch/main r-bioc-biobase amd64 2.34.0-1 [1989 kB] Get:213 http://deb.debian.org/debian/ stretch/main r-bioc-s4vectors amd64 0.12.1-2+b1 [1114 kB] Get:214 http://deb.debian.org/debian/ stretch/main r-bioc-iranges amd64 2.8.1-1+b1 [1438 kB] Get:215 http://deb.debian.org/debian/ stretch/main r-cran-dbi amd64 0.5-1-1 [332 kB] Get:216 http://deb.debian.org/debian/ stretch/main r-cran-digest amd64 0.6.11-1 [112 kB] Get:217 http://deb.debian.org/debian/ stretch/main r-cran-memoise all 1.0.0-1 [24.4 kB] Get:218 http://deb.debian.org/debian/ stretch/main r-cran-pkgkitten all 0.1.4-1 [18.7 kB] Get:219 http://deb.debian.org/debian/ stretch/main r-cran-rcpp amd64 0.12.9-1 [2168 kB] Get:220 http://deb.debian.org/debian/ stretch/main r-cran-rsqlite amd64 1.1-2-1 [745 kB] Get:221 http://deb.debian.org/debian/ stretch/main r-bioc-annotationdbi all 1.36.1-2 [4190 kB] Get:222 http://deb.debian.org/debian/ stretch/main r-bioc-biocinstaller all 1.24.0-1 [59.3 kB] Get:223 http://deb.debian.org/debian/ stretch/main r-cran-httpuv amd64 1.3.3-3 [227 kB] Get:224 http://deb.debian.org/debian/ stretch/main r-cran-mime amd64 0.5-1 [25.5 kB] Get:225 http://deb.debian.org/debian/ stretch/main r-cran-jsonlite amd64 1.2-1 [589 kB] Get:226 http://deb.debian.org/debian/ stretch/main r-cran-xtable all 1:1.8-2-1 [694 kB] Get:227 http://deb.debian.org/debian/ stretch/main r-cran-htmltools amd64 0.3.5-2 [115 kB] Get:228 http://deb.debian.org/debian/ stretch/main r-cran-r6 all 2.2.0-2 [128 kB] Get:229 http://deb.debian.org/debian/ stretch/main r-cran-sourcetools amd64 0.1.5-1 [43.0 kB] Get:230 http://deb.debian.org/debian/ stretch/main r-cran-shiny all 1.0.0+dfsg-1 [1025 kB] Get:231 http://deb.debian.org/debian/ stretch/main r-bioc-interactivedisplaybase all 1.12.0-1 [33.4 kB] Get:232 http://deb.debian.org/debian/ stretch/main r-cran-curl amd64 2.3-1 [353 kB] Get:233 http://deb.debian.org/debian/ stretch/main r-cran-openssl amd64 0.9.6-1 [552 kB] Get:234 http://deb.debian.org/debian/ stretch/main r-cran-httr all 1.2.1-1 [262 kB] Get:235 http://deb.debian.org/debian/ stretch/main r-cran-yaml amd64 2.1.14-1 [79.4 kB] Get:236 http://deb.debian.org/debian/ stretch/main r-bioc-annotationhub all 2.6.4-1 [388 kB] Get:237 http://deb.debian.org/debian/ stretch/main r-cran-lambda.r all 1.1.9-1 [66.7 kB] Get:238 http://deb.debian.org/debian/ stretch/main r-cran-futile.options all 1.0.0-2 [15.4 kB] Get:239 http://deb.debian.org/debian/ stretch/main r-cran-futile.logger all 1.4.3-1 [90.8 kB] Get:240 http://deb.debian.org/debian/ stretch/main r-cran-snow all 1:0.4.2-1 [65.0 kB] Get:241 http://deb.debian.org/debian/ stretch/main r-bioc-biocparallel all 1.8.1-1 [633 kB] Get:242 http://deb.debian.org/debian/ stretch/main r-cran-xml amd64 3.98-1.5-1 [1652 kB] Get:243 http://deb.debian.org/debian/ stretch/main r-cran-rcurl amd64 1.95-4.8-2 [607 kB] Get:244 http://deb.debian.org/debian/ stretch/main r-bioc-biomart all 2.30.0-1 [183 kB] Get:245 http://deb.debian.org/debian/ stretch/main r-bioc-xvector amd64 0.14.0-1+b1 [338 kB] Get:246 http://deb.debian.org/debian/ stretch/main r-bioc-biostrings amd64 2.42.1-1 [13.5 MB] Get:247 http://deb.debian.org/debian/ stretch/main r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB] Get:248 http://deb.debian.org/debian/ stretch/main r-cran-plyr amd64 1.8.4-1 [727 kB] Get:249 http://deb.debian.org/debian/ stretch/main r-cran-colorspace amd64 1.3-2-1 [388 kB] Get:250 http://deb.debian.org/debian/ stretch/main r-cran-munsell all 0.4.3-1 [127 kB] Get:251 http://deb.debian.org/debian/ stretch/main r-cran-scales amd64 0.4.1-1 [200 kB] Get:252 http://deb.debian.org/debian/ stretch/main r-cran-chron amd64 2.3-49-1 [104 kB] Get:253 http://deb.debian.org/debian/ stretch/main r-cran-lattice amd64 0.20-34-1 [713 kB] Get:254 http://deb.debian.org/debian/ stretch/main r-cran-cluster amd64 2.0.5-1 [490 kB] Get:255 http://deb.debian.org/debian/ stretch/main r-cran-matrix amd64 1.2-7.1-1 [2311 kB] Get:256 http://deb.debian.org/debian/ stretch/main r-cran-survival amd64 2.40-1-1 [4863 kB] Get:257 http://deb.debian.org/debian/ stretch/main r-cran-formula all 1.2-1-1 [162 kB] Get:258 http://deb.debian.org/debian/ stretch/main r-cran-rpart amd64 4.1-10-2 [861 kB] Get:259 http://deb.debian.org/debian/ stretch/main r-cran-latticeextra amd64 0.6-28-2 [2059 kB] Get:260 http://deb.debian.org/debian/ stretch/main r-cran-acepack amd64 1.4.1-1 [52.5 kB] Get:261 http://deb.debian.org/debian/ stretch/main r-cran-gtable all 0.2.0-1 [65.1 kB] Get:262 http://deb.debian.org/debian/ stretch/main r-cran-mass amd64 7.3-45-1 [1017 kB] Get:263 http://deb.debian.org/debian/ stretch/main r-cran-stringi amd64 1.1.2-1 [606 kB] Get:264 http://deb.debian.org/debian/ stretch/main r-cran-magrittr amd64 1.5-3 [147 kB] Get:265 http://deb.debian.org/debian/ stretch/main r-cran-stringr all 1.1.0-1 [117 kB] Get:266 http://deb.debian.org/debian/ stretch/main r-cran-reshape2 amd64 1.4.2-1 [87.5 kB] Get:267 http://deb.debian.org/debian/ stretch/main r-cran-assertthat all 0.1-1 [43.3 kB] Get:268 http://deb.debian.org/debian/ stretch/main r-cran-lazyeval amd64 0.2.0-1 [112 kB] Get:269 http://deb.debian.org/debian/ stretch/main r-cran-tibble amd64 1.2-1 [121 kB] Get:270 http://deb.debian.org/debian/ stretch/main r-cran-ggplot2 all 2.2.1-2 [2658 kB] Get:271 http://deb.debian.org/debian/ stretch/main r-cran-gridextra all 2.2.1-1 [451 kB] Get:272 http://deb.debian.org/debian/ stretch/main r-cran-data.table amd64 1.10.0-1 [1070 kB] Get:273 http://deb.debian.org/debian/ stretch/main r-cran-evaluate all 0.10-1 [51.5 kB] Get:274 http://deb.debian.org/debian/ stretch/main r-cran-highr all 0.6-1 [30.1 kB] Get:275 http://deb.debian.org/debian/ stretch/main libjs-mathjax all 2.7.0-2 [5603 kB] Get:276 http://deb.debian.org/debian/ stretch/main r-cran-markdown amd64 0.7.7-1 [95.2 kB] Get:277 http://deb.debian.org/debian/ stretch/main r-cran-knitr amd64 1.15.1-1 [784 kB] Get:278 http://deb.debian.org/debian/ stretch/main r-cran-viridis all 0.3.4-1 [1723 kB] Get:279 http://deb.debian.org/debian/ stretch/main r-cran-htmltable all 1.7-2 [153 kB] Get:280 http://deb.debian.org/debian/ stretch/main r-cran-base64enc amd64 0.1-3-1 [23.4 kB] Get:281 http://deb.debian.org/debian/ stretch/main r-cran-hmisc amd64 4.0-2-1 [1745 kB] Get:282 http://deb.debian.org/debian/ stretch/main r-bioc-genomeinfodb all 1.10.3-1 [14.7 MB] Get:283 http://deb.debian.org/debian/ stretch/main r-bioc-genomicranges amd64 1.26.2-1+b1 [1474 kB] Get:284 http://deb.debian.org/debian/ stretch/main r-bioc-summarizedexperiment all 1.4.0-2 [1354 kB] Get:285 http://deb.debian.org/debian/ stretch/main r-bioc-rsamtools amd64 1.26.1-2+b1 [3241 kB] Get:286 http://deb.debian.org/debian/ stretch/main r-bioc-genomicalignments amd64 1.10.0-1+b1 [1487 kB] Get:287 http://deb.debian.org/debian/ stretch/main r-bioc-rtracklayer amd64 1.34.1-1 [1831 kB] Get:288 http://deb.debian.org/debian/ stretch/main r-bioc-genomicfeatures all 1.26.2-1 [1054 kB] Get:289 http://deb.debian.org/debian/ stretch/main r-bioc-bsgenome all 1.42.0-2 [6483 kB] Get:290 http://deb.debian.org/debian/ stretch/main r-bioc-variantannotation amd64 1.20.2-1+b1 [2233 kB] Get:291 http://deb.debian.org/debian/ stretch/main r-bioc-ensembldb all 1.6.2-1 [1254 kB] Get:292 http://deb.debian.org/debian/ stretch/main r-bioc-biovizbase amd64 1.22.0-2 [2537 kB] Get:293 http://deb.debian.org/debian/ stretch/main r-cran-matrixstats amd64 0.51.0-1 [567 kB] Get:294 http://deb.debian.org/debian/ stretch/main r-bioc-gviz all 1.18.1-1 [4296 kB] Get:295 http://deb.debian.org/debian/ stretch/main r-cran-backports all 1.0.5-1 [28.6 kB] Get:296 http://deb.debian.org/debian/ stretch/main r-cran-checkmate amd64 1.8.2-1 [458 kB] Get:297 http://deb.debian.org/debian/ stretch/main r-cran-bbmisc amd64 1.10-1 [285 kB] Get:298 http://deb.debian.org/debian/ stretch/main r-cran-fail amd64 1.3-1 [43.1 kB] Get:299 http://deb.debian.org/debian/ stretch/main r-cran-batchjobs amd64 1.6-1 [422 kB] Get:300 http://deb.debian.org/debian/ stretch/main r-cran-codetools all 0.2-15-1 [46.2 kB] Get:301 http://deb.debian.org/debian/ stretch/main r-cran-iterators all 1.0.8-1 [306 kB] Get:302 http://deb.debian.org/debian/ stretch/main r-cran-foreach all 1.4.3-1 [371 kB] Get:303 http://deb.debian.org/debian/ stretch/main r-cran-foreign amd64 0.8.67-1 [211 kB] Get:304 http://deb.debian.org/debian/ stretch/main r-cran-nnet amd64 7.3-12-1 [96.9 kB] Get:305 http://deb.debian.org/debian/ stretch/main r-cran-r.methodss3 amd64 1.7.1-1 [59.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 204 MB in 7s (28.4 MB/s) (Reading database ... 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Setting up perl-base (5.24.1-3+deb9u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14189 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-3+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b1) over (1.05-8+b1) ... Preparing to unpack .../libtext-wrapi18n-perl_0.06-7.1_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-7.1) over (0.06-7) ... Preparing to unpack .../debconf-i18n_1.5.61_all.deb ... 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Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libpam0g:amd64 (1.1.8-3.6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14187 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-3_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-3) over (2:8.35-3.3+deb8u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libpcre3:amd64 (2:8.39-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14187 files and directories currently installed.) Preparing to unpack .../libselinux1_2.6-3+b3_amd64.deb ... Unpacking libselinux1:amd64 (2.6-3+b3) over (2.3-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libselinux1:amd64 (2.6-3+b3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14188 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.6-2_all.deb ... Unpacking libsemanage-common (2.6-2) over (2.3-1) ... Setting up libsemanage-common (2.6-2) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14187 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-8.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-8.1) over (1.0.6-7+b3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libbz2-1.0:amd64 (1.0.6-8.1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14186 files and directories currently installed.) Preparing to unpack .../libustr-1.0-1_1.0.4-6_amd64.deb ... Unpacking libustr-1.0-1:amd64 (1.0.4-6) over (1.0.4-3+b2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libustr-1.0-1:amd64 (1.0.4-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14181 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-3.6_amd64.deb ... Unpacking libpam-modules-bin (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Setting up libpam-modules-bin (1.1.8-3.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14180 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.1.8-3.6_amd64.deb ... Unpacking libpam-modules:amd64 (1.1.8-3.6) over (1.1.8-3.1+deb8u2+b1) ... Setting up libpam-modules:amd64 (1.1.8-3.6) ... Installing new version of config file /etc/security/namespace.init ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14188 files and directories currently installed.) Preparing to unpack .../libblkid1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libblkid1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libblkid1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libfdisk1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14188 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libfdisk1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14194 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libtinfo5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libtinfo5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14195 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncursesw5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libncursesw5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14195 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1+deb9u2) over (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14195 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libsmartcols1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14195 files and directories currently installed.) Preparing to unpack .../insserv_1.14.0-5.4+b1_amd64.deb ... Unpacking insserv (1.14.0-5.4+b1) over (1.14.0-5) ... Setting up insserv (1.14.0-5.4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14197 files and directories currently installed.) Preparing to unpack .../startpar_0.59-3.1_amd64.deb ... Unpacking startpar (0.59-3.1) over (0.59-3) ... Setting up startpar (0.59-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14197 files and directories currently installed.) Preparing to unpack .../base-files_9.9+deb9u13_amd64.deb ... Unpacking base-files (9.9+deb9u13) over (8+deb8u11) ... Setting up base-files (9.9+deb9u13) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Updating /etc/profile to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14200 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.9_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59.9) over (2.88dsf-59) ... Replacing files in old package initscripts (2.88dsf-59) ... Selecting previously unselected package init-system-helpers. Preparing to unpack .../init-system-helpers_1.48_all.deb ... Unpacking init-system-helpers (1.48) ... Replacing files in old package sysv-rc (2.88dsf-59) ... Setting up init-system-helpers (1.48) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14204 files and directories currently installed.) Preparing to unpack .../util-linux_2.29.2-1+deb9u1_amd64.deb ... Unpacking util-linux (2.29.2-1+deb9u1) over (2.25.2-6) ... Replacing files in old package initscripts (2.88dsf-59) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up util-linux (2.29.2-1+deb9u1) ... Installing new version of config file /etc/init.d/hwclock.sh ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14235 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.9_amd64.deb ... Unpacking initscripts (2.88dsf-59.9) over (2.88dsf-59) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up sysvinit-utils (2.88dsf-59.9) ... Setting up initscripts (2.88dsf-59.9) ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/umountfs ... Installing new version of config file /etc/init.d/umountroot ... Installing new version of config file /etc/default/rcS ... Installing new version of config file /etc/default/tmpfs ... Processing triggers for systemd (215-17+deb8u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14235 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.9_all.deb ... Unpacking sysv-rc (2.88dsf-59.9) over (2.88dsf-59) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up sysv-rc (2.88dsf-59.9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14233 files and directories currently installed.) Preparing to unpack .../mount_2.29.2-1+deb9u1_amd64.deb ... Unpacking mount (2.29.2-1+deb9u1) over (2.25.2-6) ... Setting up mount (2.29.2-1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14236 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.9+deb9u1_all.deb ... Unpacking sensible-utils (0.0.9+deb9u1) over (0.0.9+deb8u1) ... Setting up sensible-utils (0.0.9+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14236 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.1.1_amd64.deb ... Unpacking debianutils (4.8.1.1) over (4.4+b1) ... Setting up debianutils (4.8.1.1) ... Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14235 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.11.0-3+deb9u2_amd64.deb ... Unpacking libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14241 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.26-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.26-2) over (1.17-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libgpg-error0:amd64 (1.26-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14242 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u3_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u3) over (1.6.3-2+deb8u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libip4tc0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14242 files and directories currently installed.) Preparing to unpack .../libip4tc0_1.6.0+snapshot20161117-6_amd64.deb ... Unpacking libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libip4tc0:amd64 (1.6.0+snapshot20161117-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package liblz4-1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14248 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2+b1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up liblz4-1:amd64 (0.0~r131-2+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14254 files and directories currently installed.) Preparing to unpack .../libmount1_2.29.2-1+deb9u1_amd64.deb ... Unpacking libmount1:amd64 (2.29.2-1+deb9u1) over (2.25.2-6) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libmount1:amd64 (2.29.2-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14254 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2.1+deb9u1_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libseccomp2:amd64 (2.3.1-2.1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14260 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u12_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u12) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libudev1:amd64 (232-25+deb9u12) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14259 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u12_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u12) over (215-17+deb8u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libsystemd0:amd64 (232-25+deb9u12) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... dpkg: considering deconfiguration of systemd, which would be broken by installation of udev ... dpkg: yes, will deconfigure systemd (broken by udev) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14259 files and directories currently installed.) Preparing to unpack .../udev_232-25+deb9u12_amd64.deb ... De-configuring systemd (215-17+deb8u7) ... Unpacking udev (232-25+deb9u12) over (215-17+deb8u7) ... Replacing files in old package systemd (215-17+deb8u7) ... dpkg: warning: unable to delete old directory '/etc/modprobe.d': Directory not empty Preparing to unpack .../systemd_232-25+deb9u12_amd64.deb ... Unpacking systemd (232-25+deb9u12) over (215-17+deb8u7) ... Setting up systemd (232-25+deb9u12) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/timesyncd.conf ... Installing new version of config file /etc/systemd/user.conf ... Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service. addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.machine1.conf ... Removing obsolete conffile /etc/systemd/bootchart.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14320 files and directories currently installed.) Preparing to unpack .../systemd-sysv_232-25+deb9u12_amd64.deb ... Unpacking systemd-sysv (232-25+deb9u12) over (215-17+deb8u7) ... Setting up systemd-sysv (232-25+deb9u12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14320 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.4.47-2+b2_amd64.deb ... Unpacking libattr1:amd64 (1:2.4.47-2+b2) over (1:2.4.47-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libattr1:amd64 (1:2.4.47-2+b2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14321 files and directories currently installed.) Preparing to unpack .../acl_2.2.52-3+b1_amd64.deb ... Unpacking acl (2.2.52-3+b1) over (2.2.52-2) ... Preparing to unpack .../libacl1_2.2.52-3+b1_amd64.deb ... Unpacking libacl1:amd64 (2.2.52-3+b1) over (2.2.52-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libacl1:amd64 (2.2.52-3+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14320 files and directories currently installed.) Preparing to unpack .../libkmod2_23-2_amd64.deb ... Unpacking libkmod2:amd64 (23-2) over (18-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libkmod2:amd64 (23-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14320 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.115_all.deb ... Unpacking adduser (3.115) over (3.113+nmu3) ... Setting up adduser (3.115) ... Selecting previously unselected package libprocps6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14318 files and directories currently installed.) Preparing to unpack .../libprocps6_2%3a3.3.12-3+deb9u1_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14325 files and directories currently installed.) Preparing to unpack .../procps_2%3a3.3.12-3+deb9u1_amd64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-3+deb9u1) over (2:3.3.9-9+deb8u1) ... Processing triggers for systemd (232-25+deb9u12) ... Setting up procps (2:3.3.12-3+deb9u1) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Processing triggers for systemd (232-25+deb9u12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14327 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.25-1) over (1:2.24-8) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcap2:amd64 (1:2.25-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14327 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.137-2_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Preparing to unpack .../dmsetup_2%3a1.02.137-2_amd64.deb ... Unpacking dmsetup (2:1.02.137-2) over (2:1.02.90-2.2+deb8u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.137-2) ... Setting up dmsetup (2:1.02.137-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14331 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.3-4_amd64.deb ... Unpacking libcryptsetup4:amd64 (2:1.7.3-4) over (2:1.6.6-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libcryptsetup4:amd64 (2:1.7.3-4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14331 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-1+deb9u1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1+deb9u1) over (1.29-1+deb8u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... 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Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14373 files and directories currently installed.) Preparing to unpack .../gpgv_2.1.18-8~deb9u4_amd64.deb ... Unpacking gpgv (2.1.18-8~deb9u4) over (1.4.18-7+deb8u5) ... Setting up gpgv (2.1.18-8~deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14374 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.227_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.227) over (0.192) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libdebconfclient0:amd64 (0.227) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14375 files and directories currently installed.) Preparing to unpack .../mawk_1.3.3-17+b3_amd64.deb ... Unpacking mawk (1.3.3-17+b3) over (1.3.3-17) ... Preparing to unpack .../libexpat1_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u3) over (2.1.0-6+deb8u4) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../libpng16-16_1.6.28-1+deb9u1_amd64.deb ... 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Unpacking r-cran-foreach (1.4.3-1) over (1.4.2-1) ... Preparing to unpack .../r-cran-foreign_0.8.67-1_amd64.deb ... Unpacking r-cran-foreign (0.8.67-1) over (0.8.61-1) ... Preparing to unpack .../r-cran-nnet_7.3-12-1_amd64.deb ... Unpacking r-cran-nnet (7.3-12-1) over (7.3-8-1) ... Preparing to unpack .../r-cran-r.methodss3_1.7.1-1_amd64.deb ... Unpacking r-cran-r.methodss3 (1.7.1-1) over (1.6.1-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for systemd (232-25+deb9u12) ... Setting up libtext-charwidth-perl (0.04-7+b5) ... Setting up libtext-iconv-perl (1.7-5+b4) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up libtext-wrapi18n-perl (0.06-7.1) ... Setting up debconf-i18n (1.5.61) ... Setting up udev (232-25+deb9u12) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udevmonitor.conf ... Installing new version of config file /etc/udev/udev.conf ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. Removing obsolete conffile /etc/init.d/udev-finish ... Removing obsolete conffile /etc/init/udev-finish.conf ... Removing obsolete conffile /etc/init/udev-fallback-graphics.conf ... Removing obsolete conffile /etc/modprobe.d/fbdev-blacklist.conf ... Setting up acl (2.2.52-3+b1) ... Setting up apt (1.4.10) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Created symlink /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer → /lib/systemd/system/apt-daily-upgrade.timer. Created symlink /etc/systemd/system/timers.target.wants/apt-daily.timer → /lib/systemd/system/apt-daily.timer. Removing obsolete conffile /etc/cron.daily/apt ... Setting up mawk (1.3.3-17+b3) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up ucf (3.0036) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up fontconfig-config (2.11.0-6.7) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up libjs-jquery-metadata (11-3) ... Setting up libjs-jquery-tablesorter (11-3) ... Setting up libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-1) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up fonts-font-awesome (4.7.0~dfsg-1) ... Setting up fonts-mathjax (2.7.0-2) ... Setting up libblas-common (3.7.0-2) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: warning: forcing reinstallation of alternative /usr/lib/libblas/libblas.so.3 because link group libblas.so.3 is broken Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libcap2-bin (1:2.25-1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up x11-common (1:7.7+19) ... Installing new version of config file /etc/init.d/x11-common ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libjs-bootstrap (3.3.7+dfsg-2+deb9u2) ... Setting up libjs-es5-shim (4.5.9-1) ... Setting up libjs-highlight.js (8.2+ds-5) ... Setting up libjs-jquery-datatables (1.10.13+dfsg-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-4) ... Setting up libjs-json (0~20160510-1) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: warning: forcing reinstallation of alternative /usr/lib/lapack/liblapack.so.3 because link group liblapack.so.3 is broken Setting up libthai-data (0.1.26-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libtcl8.5:amd64 (8.5.19-2+b1) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up libtk8.5:amd64 (8.5.19-1+b1) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up zip (3.0-11+b1) ... Setting up unzip (6.0-21+deb9u2) ... Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up r-base-core (3.3.3-1) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/ldpaths ... Installing new version of config file /etc/R/repositories ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.1-1) ... Setting up littler (0.3.1-1) ... Setting up r-bioc-biocgenerics (0.20.0-1) ... Setting up r-bioc-biobase (2.34.0-1) ... Setting up r-bioc-s4vectors (0.12.1-2+b1) ... Setting up r-bioc-iranges (2.8.1-1+b1) ... Setting up r-cran-dbi (0.5-1-1) ... Setting up r-cran-digest (0.6.11-1) ... Setting up r-cran-memoise (1.0.0-1) ... Setting up r-cran-pkgkitten (0.1.4-1) ... Setting up r-cran-rcpp (0.12.9-1) ... Setting up r-cran-rsqlite (1.1-2-1) ... Setting up r-bioc-annotationdbi (1.36.1-2) ... Setting up r-bioc-biocinstaller (1.24.0-1) ... Setting up r-cran-httpuv (1.3.3-3) ... Setting up r-cran-mime (0.5-1) ... Setting up r-cran-jsonlite (1.2-1) ... Setting up r-cran-xtable (1:1.8-2-1) ... Setting up r-cran-htmltools (0.3.5-2) ... Setting up r-cran-r6 (2.2.0-2) ... Setting up r-cran-sourcetools (0.1.5-1) ... Setting up r-cran-shiny (1.0.0+dfsg-1) ... Setting up r-bioc-interactivedisplaybase (1.12.0-1) ... Setting up r-cran-curl (2.3-1) ... Setting up r-cran-openssl (0.9.6-1) ... Setting up r-cran-httr (1.2.1-1) ... Setting up r-cran-yaml (2.1.14-1) ... Setting up r-bioc-annotationhub (2.6.4-1) ... Setting up r-cran-lambda.r (1.1.9-1) ... Setting up r-cran-futile.options (1.0.0-2) ... Setting up r-cran-futile.logger (1.4.3-1) ... Setting up r-cran-snow (1:0.4.2-1) ... Setting up r-bioc-biocparallel (1.8.1-1) ... Setting up r-cran-xml (3.98-1.5-1) ... Setting up r-cran-rcurl (1.95-4.8-2) ... Setting up r-bioc-biomart (2.30.0-1) ... Setting up r-bioc-xvector (0.14.0-1+b1) ... Setting up r-bioc-biostrings (2.42.1-1) ... Setting up r-cran-rcolorbrewer (1.1-2-1) ... Setting up r-cran-plyr (1.8.4-1) ... Setting up r-cran-colorspace (1.3-2-1) ... Setting up r-cran-munsell (0.4.3-1) ... Setting up r-cran-scales (0.4.1-1) ... Setting up r-cran-chron (2.3-49-1) ... Setting up r-cran-lattice (0.20-34-1) ... Setting up r-cran-cluster (2.0.5-1) ... Setting up r-cran-matrix (1.2-7.1-1) ... Setting up r-cran-survival (2.40-1-1) ... Setting up r-cran-formula (1.2-1-1) ... Setting up r-cran-rpart (4.1-10-2) ... Setting up r-cran-latticeextra (0.6-28-2) ... Setting up r-cran-acepack (1.4.1-1) ... Setting up r-cran-gtable (0.2.0-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-stringi (1.1.2-1) ... Setting up r-cran-magrittr (1.5-3) ... Setting up r-cran-stringr (1.1.0-1) ... Setting up r-cran-reshape2 (1.4.2-1) ... Setting up r-cran-assertthat (0.1-1) ... Setting up r-cran-lazyeval (0.2.0-1) ... Setting up r-cran-tibble (1.2-1) ... Setting up r-cran-ggplot2 (2.2.1-2) ... Setting up r-cran-gridextra (2.2.1-1) ... Setting up r-cran-data.table (1.10.0-1) ... Setting up r-cran-evaluate (0.10-1) ... Setting up r-cran-highr (0.6-1) ... Setting up libjs-mathjax (2.7.0-2) ... Setting up r-cran-markdown (0.7.7-1) ... Setting up r-cran-knitr (1.15.1-1) ... Setting up r-cran-viridis (0.3.4-1) ... Setting up r-cran-htmltable (1.7-2) ... Setting up r-cran-base64enc (0.1-3-1) ... Setting up r-cran-hmisc (4.0-2-1) ... Setting up r-bioc-genomeinfodb (1.10.3-1) ... Setting up r-bioc-genomicranges (1.26.2-1+b1) ... Setting up r-bioc-summarizedexperiment (1.4.0-2) ... Setting up r-bioc-rsamtools (1.26.1-2+b1) ... Setting up r-bioc-genomicalignments (1.10.0-1+b1) ... Setting up r-bioc-rtracklayer (1.34.1-1) ... Setting up r-bioc-genomicfeatures (1.26.2-1) ... Setting up r-bioc-bsgenome (1.42.0-2) ... Setting up r-bioc-variantannotation (1.20.2-1+b1) ... Setting up r-bioc-ensembldb (1.6.2-1) ... Setting up r-bioc-biovizbase (1.22.0-2) ... Setting up r-cran-matrixstats (0.51.0-1) ... Setting up r-bioc-gviz (1.18.1-1) ... Setting up r-cran-backports (1.0.5-1) ... Setting up r-cran-checkmate (1.8.2-1) ... Setting up r-cran-bbmisc (1.10-1) ... Setting up r-cran-fail (1.3-1) ... Setting up r-cran-batchjobs (1.6-1) ... Setting up r-cran-codetools (0.2-15-1) ... Setting up r-cran-iterators (1.0.8-1) ... Setting up r-cran-foreach (1.4.3-1) ... Setting up r-cran-foreign (0.8.67-1) ... Setting up r-cran-nnet (7.3-12-1) ... Setting up r-cran-r.methodss3 (1.7.1-1) ... Processing triggers for systemd (232-25+deb9u12) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-yf', 'dist-upgrade'] 1m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m12.6s DUMP: 660e5103244a20b75ca08c3f8741e16e - 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gviz'] 1m12.7s DUMP: Package: r-bioc-gviz Version: 1.18.1-1 Installed-Size: 6074 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.3.2-1), r-api-3, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges (>= 1.99.18), r-bioc-genomicranges (>= 1.17.20), r-bioc-xvector (>= 0.5.7), r-bioc-rtracklayer (>= 1.25.13), r-cran-lattice, r-cran-rcolorbrewer, r-bioc-biomart (>= 2.11.0), r-bioc-annotationdbi (>= 1.27.5), r-bioc-biobase (>= 2.15.3), r-bioc-genomicfeatures (>= 1.17.22), r-bioc-bsgenome (>= 1.33.1), r-bioc-biostrings (>= 2.33.11), r-bioc-biovizbase (>= 1.13.8), r-bioc-rsamtools (>= 1.17.28), r-cran-latticeextra (>= 0.6-26), r-cran-matrixstats (>= 0.8.14), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-biocgenerics (>= 0.11.3), r-cran-digest (>= 0.6.8) Suggests: r-cran-xtable Description-en: Plotting data and annotation information along genomic coordinates Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data. Description-md5: a1192a0bcb8465ef96fce24dbb9e40c0 Homepage: https://bioconductor.org/packages/Gviz/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gviz/r-bioc-gviz_1.18.1-1_all.deb Size: 4295502 MD5sum: c80cbd2d9f68f7fb922772888a9d293c SHA256: 7371a8921d54f03791727a1476c970b348834e50772fcb515df881ad2cef9ee2 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gviz'] 1m12.7s INFO: apt-cache knows about the following packages: r-bioc-gviz 1m12.7s INFO: Running scripts pre_install 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_database-server'] 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_database-server'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_exceptions'] 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_exceptions'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_extras'] 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_extras'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture'] 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy'] 1m12.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy'] 1m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy', 'r-bioc-gviz'] 1m12.8s DUMP: r-bioc-gviz: Installed: 1.18.1-1 Candidate: 1.18.1-1 Version table: *** 1.18.1-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 1m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy', 'r-bioc-gviz'] 1m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-y', 'install', 'r-bioc-gviz'] 1m13.0s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-gviz is already the newest version (1.18.1-1). The following packages were automatically installed and are no longer required: libgnutls-deb0-28 libhogweed2 libnettle4 libpng12-0 libssl1.0.0 libtcl8.5 libtk8.5 r-cran-foreign r-cran-nnet r-cran-r.methodss3 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-y', 'install', 'r-bioc-gviz'] 1m13.0s INFO: Running scripts post_install 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_install_exceptions'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_install_exceptions'] 1m13.0s INFO: Running scripts post_distupgrade 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_exceptions'] 1m13.1s DUMP: mode of '/usr/share/man/sl' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man1' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) mode of '/usr/share/man/sl/man8' changed from 0775 (rwxrwxr-x) to 0755 (rwxr-xr-x) 1m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_exceptions'] 1m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_zz_backports'] 1m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_distupgrade_zz_backports'] 1m13.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m14.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m14.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m15.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m15.0s INFO: Running scripts pre_install 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_database-server'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_database-server'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_exceptions'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_exceptions'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_extras'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_extras'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy'] 1m15.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy'] 1m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy', 'r-bioc-gviz'] 1m15.1s DUMP: r-bioc-gviz: Installed: 1.18.1-1 Candidate: 1.18.1-1 Version table: *** 1.18.1-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 1m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-cache', 'policy', 'r-bioc-gviz'] 1m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-y', 'install', 'r-bioc-gviz=1.18.1-1'] 1m15.4s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-gviz is already the newest version (1.18.1-1). The following packages were automatically installed and are no longer required: libgnutls-deb0-28 libhogweed2 libnettle4 libpng12-0 libssl1.0.0 libtcl8.5 libtk8.5 r-cran-foreign r-cran-nnet r-cran-r.methodss3 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', '-y', 'install', 'r-bioc-gviz=1.18.1-1'] 1m15.4s INFO: Running scripts post_install 1m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_install_exceptions'] 1m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_install_exceptions'] 1m15.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m16.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m18.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', '-ac', '--ignore-obsolete'] 1m19.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', '-ac', '--ignore-obsolete'] 1m19.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.0s DUMP: 0.15.6 1m20.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.0s INFO: Running adequate version 0.15.6 now. 1m20.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'r-bioc-gviz'] 1m20.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'r-bioc-gviz'] 1m20.0s INFO: Running scripts pre_remove 1m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_exceptions'] 1m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/pre_remove_exceptions'] 1m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m23.6s DUMP: install ok installed acl acl 2.2.52-3+b1 install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed ca-certificates ca-certificates 20200601~deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debconf-i18n debconf-i18n 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dmsetup dmsetup 2:1.02.137-2 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fontconfig fontconfig 2.11.0-6.7+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-font-awesome fonts-font-awesome 4.7.0~dfsg-1 install ok installed fonts-mathjax fonts-mathjax 2.7.0-2 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gnupg gnupg 2.1.18-8~deb9u4 install ok installed gnupg-agent gnupg-agent 2.1.18-8~deb9u4 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init init 1.48 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed initscripts initscripts 2.88dsf-59.9 install ok installed insserv insserv 1.14.0-5.4+b1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapparmor1:amd64 libapparmor1 2.11.0-3+deb9u2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libassuan0:amd64 libassuan0 2.4.3-2 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3 libblas3 3.7.0-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcairo2:amd64 libcairo2 1.14.8-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcap2:amd64 libcap2 1:2.25-1 install ok installed libcap2-bin libcap2-bin 1:2.25-1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.7.3-4 install ok installed libcurl3:amd64 libcurl3 7.52.1-5+deb9u10 install ok installed libdatrie1:amd64 libdatrie1 0.2.10-4+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.137-2 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u3 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.50.3-2+deb9u2 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u5 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.15-1+deb9u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 1.4.2-1 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+b2 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libidn2-0:amd64 libidn2-0 0.16-1+deb9u1 install ok installed libip4tc0:amd64 libip4tc0 1.6.0+snapshot20161117-6 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2 install ok installed libjs-bootstrap libjs-bootstrap 3.3.7+dfsg-2+deb9u2 install ok installed libjs-es5-shim libjs-es5-shim 4.5.9-1 install ok installed libjs-highlight.js libjs-highlight.js 8.2+ds-5 install ok installed libjs-jquery libjs-jquery 3.1.1-2+deb9u1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.10.13+dfsg-2 install ok installed libjs-jquery-metadata libjs-jquery-metadata 11-3 install ok installed libjs-jquery-tablesorter libjs-jquery-tablesorter 11-3 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-4 install ok installed libjs-json libjs-json 0~20160510-1 install ok installed libjs-mathjax libjs-mathjax 2.7.0-2 install ok installed libjs-twitter-bootstrap libjs-twitter-bootstrap 2.0.2+dfsg-10 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.15-1+deb9u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9 install ok installed libkmod2:amd64 libkmod2 23-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.15-1+deb9u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.15-1+deb9u1 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed liblapack3 liblapack3 3.7.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u4 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u4 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b1 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnettle6:amd64 libnettle6 3.3-1+b2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.18.1-1+deb9u1 install ok installed libnpth0:amd64 libnpth0 1.3-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.40.5-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.40.5-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.40.5-1 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu5 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu5 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.34.0-1 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libpsl5:amd64 libpsl5 0.17.0-3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-1+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libseccomp2:amd64 libseccomp2 2.3.1-2.1+deb9u1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libslang2:amd64 libslang2 2.3.1-5 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libssh2-1:amd64 libssh2-1 1.7.0-1+deb9u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libtcl8.5:amd64 libtcl8.5 8.5.19-2+b1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.6+dfsg-1+b1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b5 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7.1 install ok installed libthai-data libthai-data 0.1.26-1 install ok installed libthai0:amd64 libthai0 0.1.26-1 install ok installed libtiff5:amd64 libtiff5 4.0.8-2+deb9u5 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libtk8.5:amd64 libtk8.5 8.5.19-1+b1 install ok installed libtk8.6:amd64 libtk8.6 8.6.6-1+b1 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-30 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u1 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.12-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.12-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-1+b2 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed littler littler 0.3.1-1 install ok installed login login 1:4.4-4.1 install ok installed lsb-base lsb-base 9.20161125 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed openssl openssl 1.1.0l-1~deb9u1 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed pinentry-curses pinentry-curses 1.0.0-2 install ok installed procps procps 2:3.3.12-3+deb9u1 install ok installed r-base-core r-base-core 3.3.3-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.36.1-2 install ok installed r-bioc-annotationhub r-bioc-annotationhub 2.6.4-1 install ok installed r-bioc-biobase r-bioc-biobase 2.34.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.20.0-1 install ok installed r-bioc-biocinstaller r-bioc-biocinstaller 1.24.0-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.8.1-1 install ok installed r-bioc-biomart r-bioc-biomart 2.30.0-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.42.1-1 install ok installed r-bioc-biovizbase r-bioc-biovizbase 1.22.0-2 install ok installed r-bioc-bsgenome r-bioc-bsgenome 1.42.0-2 install ok installed r-bioc-ensembldb r-bioc-ensembldb 1.6.2-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.10.3-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.10.0-1+b1 install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.26.2-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.26.2-1+b1 install ok installed r-bioc-gviz r-bioc-gviz 1.18.1-1 install ok installed r-bioc-interactivedisplaybase r-bioc-interactivedisplaybase 1.12.0-1 install ok installed r-bioc-iranges r-bioc-iranges 2.8.1-1+b1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 1.26.1-2+b1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.34.1-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.12.1-2+b1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.4.0-2 install ok installed r-bioc-variantannotation r-bioc-variantannotation 1.20.2-1+b1 install ok installed r-bioc-xvector r-bioc-xvector 0.14.0-1+b1 install ok installed r-cran-acepack r-cran-acepack 1.4.1-1 install ok installed r-cran-assertthat r-cran-assertthat 0.1-1 install ok installed r-cran-backports r-cran-backports 1.0.5-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-1 install ok installed r-cran-batchjobs r-cran-batchjobs 1.6-1 install ok installed r-cran-bbmisc r-cran-bbmisc 1.10-1 install ok installed r-cran-bitops r-cran-bitops 1.0-6-1 install ok installed r-cran-brew r-cran-brew 1.0-6-1 install ok installed r-cran-checkmate r-cran-checkmate 1.8.2-1 install ok installed r-cran-chron r-cran-chron 2.3-49-1 install ok installed r-cran-cluster r-cran-cluster 2.0.5-1 install ok installed r-cran-codetools r-cran-codetools 0.2-15-1 install ok installed r-cran-colorspace r-cran-colorspace 1.3-2-1 install ok installed r-cran-curl r-cran-curl 2.3-1 install ok installed r-cran-data.table r-cran-data.table 1.10.0-1 install ok installed r-cran-dbi r-cran-dbi 0.5-1-1 install ok installed r-cran-dichromat r-cran-dichromat 2.0.0-3 install ok installed r-cran-digest r-cran-digest 0.6.11-1 install ok installed r-cran-evaluate r-cran-evaluate 0.10-1 install ok installed r-cran-fail r-cran-fail 1.3-1 install ok installed r-cran-foreach r-cran-foreach 1.4.3-1 install ok installed r-cran-foreign r-cran-foreign 0.8.67-1 install ok installed r-cran-formula r-cran-formula 1.2-1-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-1 install ok installed r-cran-futile.options r-cran-futile.options 1.0.0-2 install ok installed r-cran-ggplot2 r-cran-ggplot2 2.2.1-2 install ok installed r-cran-gridextra r-cran-gridextra 2.2.1-1 install ok installed r-cran-gtable r-cran-gtable 0.2.0-1 install ok installed r-cran-highr r-cran-highr 0.6-1 install ok installed r-cran-hmisc r-cran-hmisc 4.0-2-1 install ok installed r-cran-htmltable r-cran-htmltable 1.7-2 install ok installed r-cran-htmltools r-cran-htmltools 0.3.5-2 install ok installed r-cran-httpuv r-cran-httpuv 1.3.3-3 install ok installed r-cran-httr r-cran-httr 1.2.1-1 install ok installed r-cran-iterators r-cran-iterators 1.0.8-1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.2-1 install ok installed r-cran-knitr r-cran-knitr 1.15.1-1 install ok installed r-cran-labeling r-cran-labeling 0.3-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.1.9-1 install ok installed r-cran-lattice r-cran-lattice 0.20-34-1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-28-2 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.0-1 install ok installed r-cran-littler r-cran-littler 0.3.1-1 install ok installed r-cran-magrittr r-cran-magrittr 1.5-3 install ok installed r-cran-markdown r-cran-markdown 0.7.7-1 install ok installed r-cran-mass r-cran-mass 7.3-45-1 install ok installed r-cran-matrix r-cran-matrix 1.2-7.1-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.51.0-1 install ok installed r-cran-memoise r-cran-memoise 1.0.0-1 install ok installed r-cran-mime r-cran-mime 0.5-1 install ok installed r-cran-munsell r-cran-munsell 0.4.3-1 install ok installed r-cran-nnet r-cran-nnet 7.3-12-1 install ok installed r-cran-openssl r-cran-openssl 0.9.6-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-1 install ok installed r-cran-plyr r-cran-plyr 1.8.4-1 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.7.1-1 install ok installed r-cran-r6 r-cran-r6 2.2.0-2 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-1 install ok installed r-cran-rcpp r-cran-rcpp 0.12.9-1 install ok installed r-cran-rcurl r-cran-rcurl 1.95-4.8-2 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.2-1 install ok installed r-cran-rpart r-cran-rpart 4.1-10-2 install ok installed r-cran-rsqlite r-cran-rsqlite 1.1-2-1 install ok installed r-cran-scales r-cran-scales 0.4.1-1 install ok installed r-cran-sendmailr r-cran-sendmailr 1.2-1-1 install ok installed r-cran-shiny r-cran-shiny 1.0.0+dfsg-1 install ok installed r-cran-snow r-cran-snow 1:0.4.2-1 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.5-1 install ok installed r-cran-stringi r-cran-stringi 1.1.2-1 install ok installed r-cran-stringr r-cran-stringr 1.1.0-1 install ok installed r-cran-survival r-cran-survival 2.40-1-1 install ok installed r-cran-tibble r-cran-tibble 1.2-1 install ok installed r-cran-viridis r-cran-viridis 0.3.4-1 install ok installed r-cran-xml r-cran-xml 3.98-1.5-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-2-1 install ok installed r-cran-yaml r-cran-yaml 2.1.14-1 install ok installed readline-common readline-common 7.0-3 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed startpar startpar 0.59-3.1 install ok installed systemd systemd 232-25+deb9u12 install ok installed systemd-sysv systemd-sysv 232-25+deb9u12 install ok installed sysv-rc sysv-rc 2.88dsf-59.9 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed tzdata tzdata 2020a-0+deb9u1 install ok installed ucf ucf 3.0036 install ok installed udev udev 232-25+deb9u12 install ok installed unzip unzip 6.0-21+deb9u2 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-utils xdg-utils 1.1.1-1+deb9u2 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 1m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-mathjax', 'gnupg', 'gnupg-agent', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhogweed4:amd64', 'libice6:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libnettle4:amd64', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libprocps3:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'openssl', 'pinentry-curses', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-acepack', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-evaluate', 'r-cran-fail', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r.methodss3', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-viridis', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-gviz'] 1m25.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libassuan0 libksba8 libnpth0 libreadline7 libsqlite3-0 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-mathjax gnupg gnupg-agent libblas-common libblas3 libbsd0 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls-deb0-28 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed2 libhogweed4 libice6 libicu57 libidn2-0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnettle4 libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng12-0 libpng16-16 libprocps3 libpsl5 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.0 libssl1.0.2 libssl1.1 libtasn1-6 libtcl8.5 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.5 libtk8.6 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler openssl pinentry-curses r-base-core r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-acepack r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-chron r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-digest r-cran-evaluate r-cran-fail r-cran-foreach r-cran-foreign r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-iterators r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-munsell r-cran-nnet r-cran-openssl r-cran-pkgkitten r-cran-plyr r-cran-r.methodss3 r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-viridis r-cran-xml r-cran-xtable r-cran-yaml ucf unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 207 to remove and 0 not upgraded. After this operation, 362 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23520 files and directories currently installed.) Removing r-bioc-gviz (1.18.1-1) ... Removing r-bioc-biovizbase (1.22.0-2) ... Removing r-cran-hmisc (4.0-2-1) ... Removing r-cran-rpart (4.1-10-2) ... Removing r-cran-survival (2.40-1-1) ... Removing r-bioc-variantannotation (1.20.2-1+b1) ... Removing r-bioc-ensembldb (1.6.2-1) ... Removing r-bioc-genomicfeatures (1.26.2-1) ... Removing r-cran-ggplot2 (2.2.1-2) ... Removing r-cran-tibble (1.2-1) ... Removing libtk8.5:amd64 (8.5.19-1+b1) ... Removing r-bioc-annotationhub (2.6.4-1) ... Removing r-bioc-interactivedisplaybase (1.12.0-1) ... Removing r-cran-shiny (1.0.0+dfsg-1) ... Removing fonts-font-awesome (4.7.0~dfsg-1) ... Removing r-cran-viridis (0.3.4-1) ... Removing r-cran-htmltable (1.7-2) ... Removing r-cran-knitr (1.15.1-1) ... Removing r-cran-markdown (0.7.7-1) ... Removing libjs-mathjax (2.7.0-2) ... Removing fonts-mathjax (2.7.0-2) ... Removing gnupg (2.1.18-8~deb9u4) ... Removing gnupg-agent (2.1.18-8~deb9u4) ... Removing littler (0.3.1-1) ... Removing r-bioc-bsgenome (1.42.0-2) ... Removing r-bioc-biomart (2.30.0-1) ... Removing r-cran-httr (1.2.1-1) ... Removing r-cran-curl (2.3-1) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing r-cran-acepack (1.4.1-1) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing r-cran-data.table (1.10.0-1) ... Removing r-cran-evaluate (0.10-1) ... Removing r-cran-reshape2 (1.4.2-1) ... Removing libjs-bootstrap (3.3.7+dfsg-2+deb9u2) ... Removing libjs-es5-shim (4.5.9-1) ... Removing r-cran-highr (0.6-1) ... Removing libjs-highlight.js (8.2+ds-5) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-1) ... Removing libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Removing libjs-jquery-ui (1.12.1+dfsg-4) ... Removing libjs-jquery-datatables (1.10.13+dfsg-2) ... Removing libjs-jquery-tablesorter (11-3) ... Removing libjs-jquery-metadata (11-3) ... Removing libjs-json (0~20160510-1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Removing r-cran-cluster (2.0.5-1) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing r-cran-openssl (0.9.6-1) ... Removing libtcl8.5:amd64 (8.5.19-2+b1) ... Removing pinentry-curses (1.0.0-2) ... Removing r-bioc-annotationdbi (1.36.1-2) ... Removing r-bioc-biocinstaller (1.24.0-1) ... Removing r-cran-assertthat (0.1-1) ... Removing r-cran-batchjobs (1.6-1) ... Removing r-cran-fail (1.3-1) ... Removing r-cran-bbmisc (1.10-1) ... Removing r-cran-checkmate (1.8.2-1) ... Removing r-cran-backports (1.0.5-1) ... Removing r-cran-sendmailr (1.2-1-1) ... Removing r-cran-base64enc (0.1-3-1) ... Removing r-cran-brew (1.0-6-1) ... Removing r-cran-chron (2.3-49-1) ... Removing r-cran-foreach (1.4.3-1) ... Removing r-cran-codetools (0.2-15-1) ... Removing r-cran-scales (0.4.1-1) ... Removing r-cran-munsell (0.4.3-1) ... Removing r-cran-colorspace (1.3-2-1) ... Removing r-cran-rsqlite (1.1-2-1) ... Removing r-cran-dbi (0.5-1-1) ... Removing r-cran-dichromat (2.0.0-3) ... Removing r-cran-memoise (1.0.0-1) ... Removing r-cran-htmltools (0.3.5-2) ... Removing r-cran-digest (0.6.11-1) ... Removing r-cran-foreign (0.8.67-1) ... Removing r-cran-formula (1.2-1-1) ... Removing r-cran-gridextra (2.2.1-1) ... Removing r-cran-gtable (0.2.0-1) ... Removing r-cran-httpuv (1.3.3-3) ... Removing r-cran-iterators (1.0.8-1) ... Removing r-cran-jsonlite (1.2-1) ... Removing r-cran-labeling (0.3-1) ... Removing r-cran-latticeextra (0.6-28-2) ... Removing r-cran-lazyeval (0.2.0-1) ... Removing r-cran-mass (7.3-45-1) ... Removing r-cran-matrixstats (0.51.0-1) ... Removing r-cran-mime (0.5-1) ... Removing r-cran-nnet (7.3-12-1) ... Removing r-cran-plyr (1.8.4-1) ... Removing r-cran-r.methodss3 (1.7.1-1) ... Removing r-cran-r6 (2.2.0-2) ... Removing r-cran-rcolorbrewer (1.1-2-1) ... Removing r-cran-sourcetools (0.1.5-1) ... Removing r-cran-xtable (1:1.8-2-1) ... Removing r-cran-yaml (2.1.14-1) ... Removing r-bioc-rtracklayer (1.34.1-1) ... Removing r-bioc-genomicalignments (1.10.0-1+b1) ... Removing r-bioc-summarizedexperiment (1.4.0-2) ... Removing r-cran-matrix (1.2-7.1-1) ... Removing r-cran-rcpp (0.12.9-1) ... Removing r-cran-littler (0.3.1-1) ... Removing r-cran-stringr (1.1.0-1) ... Removing r-cran-stringi (1.1.2-1) ... Removing r-cran-xml (3.98-1.5-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Removing libjs-jquery (3.1.1-2+deb9u1) ... Removing r-bioc-biobase (2.34.0-1) ... Removing r-cran-lattice (0.20-34-1) ... Removing r-cran-magrittr (1.5-3) ... Removing r-cran-pkgkitten (0.1.4-1) ... Removing r-bioc-rsamtools (1.26.1-2+b1) ... Removing r-bioc-biocparallel (1.8.1-1) ... Removing r-cran-snow (1:0.4.2-1) ... Removing r-bioc-genomicranges (1.26.2-1+b1) ... Removing r-bioc-genomeinfodb (1.10.3-1) ... Removing r-cran-rcurl (1.95-4.8-2) ... Removing r-bioc-biostrings (2.42.1-1) ... Removing r-bioc-xvector (0.14.0-1+b1) ... Removing r-bioc-iranges (2.8.1-1+b1) ... Removing r-bioc-s4vectors (0.12.1-2+b1) ... Removing r-bioc-biocgenerics (0.20.0-1) ... Removing r-cran-bitops (1.0-6-1) ... Removing r-cran-futile.logger (1.4.3-1) ... Removing r-cran-futile.options (1.0.0-2) ... Removing r-cran-lambda.r (1.1.9-1) ... Removing r-base-core (3.3.3-1) ... Removing ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.40.5-1) ... Removing libpangoft2-1.0-0:amd64 (1.40.5-1) ... Removing libpango-1.0-0:amd64 (1.40.5-1) ... Removing fontconfig (2.11.0-6.7+b1) ... Removing libtk8.6:amd64 (8.6.6-1+b1) ... Removing libxft2:amd64 (2.3.2-1+b2) ... Removing libcairo2:amd64 (1.14.8-1) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing fonts-dejavu-core (2.37-1) ... Removing liblapack3 (3.7.0-2) ... Removing libblas3 (3.7.0-2) ... Removing libblas-common (3.7.0-2) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libxcb-shm0:amd64 (1.12-1) ... Removing libsm6:amd64 (2:1.2.2-1+b3) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libcurl3:amd64 (7.52.1-5+deb9u10) ... Removing libthai0:amd64 (0.1.26-1) ... Removing libdatrie1:amd64 (0.2.10-4+b1) ... Removing libexpat1:amd64 (2.2.0-2+deb9u3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Removing libharfbuzz0b:amd64 (1.4.2-1) ... Removing libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libgraphite2-3:amd64 (1.3.10-1) ... Removing libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libpsl5:amd64 (0.17.0-3) ... Removing libidn2-0:amd64 (0.16-1+deb9u1) ... Removing libtiff5:amd64 (4.0.8-2+deb9u5) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2) ... Removing libkrb5-3:amd64 (1.15-1+deb9u1) ... Removing libk5crypto3:amd64 (1.15-1+deb9u1) ... Removing libkrb5support0:amd64 (1.15-1+deb9u1) ... Removing libkeyutils1:amd64 (1.5.9-9) ... Removing libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Removing libldap-common (2.4.44+dfsg-5+deb9u4) ... Removing libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Removing libpaper-utils (1.1.24+nmu5) ... Removing libpaper1:amd64 (1.1.24+nmu5) ... Removing libpixman-1-0:amd64 (0.34.0-1) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Removing libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Removing libssh2-1:amd64 (1.7.0-1+deb9u1) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing openssl (1.1.0l-1~deb9u1) ... Removing libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Removing libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Removing libthai-data (0.1.26-1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libxcb-render0:amd64 (1.12-1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing ucf (3.0036) ... Removing unzip (6.0-21+deb9u2) ... Removing x11-common (1:7.7+19) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.1-1+deb9u2) ... Removing zip (3.0-11+b1) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1) ... Removing libgnutls30:amd64 (3.5.8-5+deb9u5) ... Removing libp11-kit0:amd64 (0.23.3-2) ... Removing libffi6:amd64 (3.2.1-6) ... Removing libhogweed4:amd64 (3.3-1+b2) ... Removing libgmp10:amd64 (2:6.1.2+dfsg-1) ... Removing libnettle6:amd64 (3.3-1+b2) ... Removing libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Removing libx11-data (2:1.6.4-3+deb9u1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 1m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-mathjax', 'gnupg', 'gnupg-agent', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhogweed4:amd64', 'libice6:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libnettle4:amd64', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libprocps3:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'openssl', 'pinentry-curses', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-acepack', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-evaluate', 'r-cran-fail', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r.methodss3', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-viridis', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-gviz'] 1m25.4s INFO: Running scripts post_remove 1m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_remove_exceptions'] 1m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_remove_exceptions'] 1m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-mathjax', 'gnupg', 'gnupg-agent', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhogweed4:amd64', 'libice6:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libnettle4:amd64', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libprocps3:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'openssl', 'pinentry-curses', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-acepack', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-evaluate', 'r-cran-fail', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r.methodss3', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-viridis', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m26.2s DUMP: (Reading database ... 7743 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig (2.11.0-6.7+b1) ... Purging configuration files for fontconfig-config (2.11.0-6.7) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: ignoring request to remove fonts-font-awesome which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed Purging configuration files for gnupg-agent (2.1.18-8~deb9u4) ... dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcurl3 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi6 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... dpkg: warning: ignoring request to remove libgmp10 which isn't installed Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... dpkg: warning: ignoring request to remove libgnutls30 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libhogweed4 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-es5-shim which isn't installed dpkg: warning: ignoring request to remove libjs-highlight.js which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-datatables which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-metadata which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-tablesorter which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-4) ... dpkg: warning: ignoring request to remove libjs-json which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.44+dfsg-5+deb9u4) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libnettle6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.24+nmu5) ... dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... dpkg: warning: ignoring request to remove libpng16-16 which isn't installed Purging configuration files for libprocps3:amd64 (2:3.3.9-9+deb8u1) ... dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Purging configuration files for libssl1.1:amd64 (1.1.0l-1~deb9u1) ... dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtcl8.5 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtk8.5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed Purging configuration files for libxss1:amd64 (1:1.2.2-1) ... dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed Purging configuration files for openssl (1.1.0l-1~deb9u1) ... dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for r-base-core (3.3.3-1) ... dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationhub which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocinstaller which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biomart which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-biovizbase which isn't installed dpkg: warning: ignoring request to remove r-bioc-bsgenome which isn't installed dpkg: warning: ignoring request to remove r-bioc-ensembldb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicfeatures which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-interactivedisplaybase which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-variantannotation which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-cran-acepack which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-batchjobs which isn't installed dpkg: warning: ignoring request to remove r-cran-bbmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-brew which isn't installed dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove r-cran-chron which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-dichromat which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fail which isn't installed dpkg: warning: ignoring request to remove r-cran-foreach which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-formula which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltable which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-markdown which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed Purging configuration files for r-cran-rcurl (1.95-4.8-2) ... dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-sendmailr which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-viridis which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed Purging configuration files for ucf (3.0036) ... Purging configuration files for unzip (6.0-21+deb9u2) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed Processing triggers for systemd (232-25+deb9u12) ... 1m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-mathjax', 'gnupg', 'gnupg-agent', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls-deb0-28:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed2:amd64', 'libhogweed4:amd64', 'libice6:amd64', 'libicu57:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libnettle4:amd64', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng12-0:amd64', 'libpng16-16:amd64', 'libprocps3:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtasn1-6:amd64', 'libtcl8.5:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'openssl', 'pinentry-curses', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-cran-acepack', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-batchjobs', 'r-cran-bbmisc', 'r-cran-bitops', 'r-cran-brew', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-evaluate', 'r-cran-fail', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r.methodss3', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-viridis', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg', '--purge', 'r-bioc-gviz'] 1m26.2s DUMP: dpkg: warning: ignoring request to remove r-bioc-gviz which isn't installed 1m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg', '--purge', 'r-bioc-gviz'] 1m26.2s INFO: Running scripts post_purge 1m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_purge_exceptions'] 1m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_purge_exceptions'] 1m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg', '--purge', '--pending'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg', '--purge', '--pending'] 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg', '--remove', '--pending'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg', '--remove', '--pending'] 1m26.3s INFO: Running scripts post_test 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_test_exceptions'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'tmp/scripts/post_test_exceptions'] 1m26.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m26.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg-divert', '--list'] 1m26.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'dpkg-divert', '--list'] 1m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', 'clean'] 1m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpczgoghnz', 'apt-get', 'clean'] 1m26.8s DEBUG: Recording chroot state 1m27.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/shm'] 1m27.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/shm'] 1m27.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/console'] 1m27.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/console'] 1m27.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/ptmx'] 1m27.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/ptmx'] 1m27.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/pts'] 1m27.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/dev/pts'] 1m27.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/proc'] 1m27.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpczgoghnz/proc'] 1m27.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m27.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpczgoghnz'] 1m27.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpczgoghnz 1m27.9s INFO: PASS: Upgrading between Debian distributions. 1m27.9s INFO: PASS: All tests. 1m27.9s INFO: piuparts run ends. ret=0 End: 2022-11-16 02:26:47 GMT