Start: 2019-06-08 19:21:28 UTC [lenny] Package: med-bio-dev Priority: extra Section: misc Installed-Size: 112 Maintainer: Debian Med Packaging Team Architecture: all Source: debian-med Version: 1.0 Depends: med-tasks (= 1.0), med-config (= 1.0) Recommends: bioperl, libajax5-dev, libbio-mage-perl, libbio-ruby, libgenome-1.3-1, libgo-perl, libncbi6-dev, libnucleus5-dev, libqsearch-dev, libvibrant6-dev, mcl, python-biopython Suggests: aceperl, bioclipse, bioconductor, biomode, libbio-das-perl, libbio-mage-utils-perl, libbiojava-java, libgff-perl, libmems-1.5-1, libtfbs-perl, limma, r-base-core, seqan Filename: pool/main/d/debian-med/med-bio-dev_1.0_all.deb Size: 9628 MD5sum: 42891e9393c3e1bd12a65de4f48717a2 SHA1: 44c10a076d91999021fee3c1d0dd237f8cfd4877 SHA256: 0390d2f23df334ecaca20284729f2bf916f952063b5d540611340ecca81d5231 Description: Debian Med packages for development of micro-biology applications This meta package will install Debian packages which might be helpful for development of applications for micro-biological research. Tag: field::biology, role::metapackage, suite::debian [squeeze] Package: med-bio-dev Priority: extra Section: misc Installed-Size: 120 Maintainer: Debian Med Packaging Team Architecture: all Source: debian-med Version: 1.8 Depends: med-tasks (= 1.8), med-config (= 1.8) Recommends: bioperl, bioperl-run, biosquid, libace-perl, libajax6-dev, libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl, libbio-primerdesigner-perl, libbio-ruby, libbiojava-java, libgenome-1.3-0-dev, libgo-perl, libncbi6-dev, libnucleus6-dev, libqsearch-dev, libsrf-dev, libstaden-read-dev, libtfbs-perl, libvibrant6-dev, mcl, octave-bioinfo, python-biopython, r-cran-genetics, r-cran-haplo.stats, seqan-dev Suggests: bioclipse, bioconductor, libajax5-dev, libbio-das-perl, libbiococoa-dev, libgff-perl, libmems-1.5-1, libnucleus5-dev, libsbml1, limma, python-cogent, r-cran-rocr Filename: pool/main/d/debian-med/med-bio-dev_1.8_all.deb Size: 11604 MD5sum: b82ad7e05066ab0c8fce8f7562e9965f SHA1: f2e7f18937814a661ed47dffb19d49729d0d6d9d SHA256: fc60039e3894cc03a26c91ad77ef3f9211f88bd4285280d926ee1cf7df95e2ba Description: Debian Med packages for development of micro-biology applications This metapackage will install Debian packages which might be helpful for development of applications for micro-biological research. Tag: field::biology, role::metapackage, suite::debian Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --dpkg-noforce-unsafe-io -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/lenny_amd64.tar.gz -d lenny -d squeeze -S /srv/piuparts.debian.org/slave/refchroot/lenny2squeeze/reference-chroot-metadata.dat --apt med-bio-dev=1.8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.0.1~201905302148~1.0.0-39-g932a275e starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --dpkg-noforce-unsafe-io -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/lenny_amd64.tar.gz -d lenny -d squeeze -S /srv/piuparts.debian.org/slave/refchroot/lenny2squeeze/reference-chroot-metadata.dat --apt med-bio-dev=1.8 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u2 (2019-05-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpodghJ6 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/lenny_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpodghJ6 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpodghJ6', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/lenny_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpodghJ6', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/lenny_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpodghJ6/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpodghJ6/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://archive.debian.org/debian lenny main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpodghJ6/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpodghJ6/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DUMP: Creating /etc/apt/apt.conf.d/unauthenticated-lenny ... APT::Get::AllowUnauthenticated "true"; Acquire::Check-Valid-Until "false"; 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'apt-get', 'update'] 0m3.6s DUMP: Hit http://archive.debian.org lenny Release.gpg Hit http://archive.debian.org lenny Release Err http://archive.debian.org lenny Release Get:1 http://archive.debian.org lenny Release [99.6kB] Ign http://archive.debian.org lenny Release Hit http://archive.debian.org lenny/main Packages Fetched 99.6kB in 1s (77.6kB/s) Reading package lists... W: GPG error: http://archive.debian.org lenny Release: The following signatures were invalid: KEYEXPIRED 1520281423 KEYEXPIRED 1337087218 W: You may want to run apt-get update to correct these problems 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'apt-get', 'update'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.0s DUMP: 56f439106c7080b6dfdf25253b22b7c9 - 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.0s INFO: Running scripts post_setup 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'tmp/scripts/post_setup_dummy_users'] 0m4.7s DUMP: useradd: error locking group file 0m4.7s ERROR: Command failed (status=10): ['chroot', '/srv/piuparts.debian.org/tmp/tmpodghJ6', 'tmp/scripts/post_setup_dummy_users'] useradd: error locking group file 0m5.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/shm'] 0m5.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/shm'] 0m5.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/console'] 0m5.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/console'] 0m5.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/ptmx'] 0m5.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/ptmx'] 0m5.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/pts'] 0m5.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/dev/pts'] 0m5.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/proc'] 0m5.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpodghJ6/proc'] 0m5.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpodghJ6'] 0m5.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpodghJ6'] 0m5.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpodghJ6 0m5.7s ERROR: piuparts run ends. ret=1 End: 2019-06-08 19:21:34 UTC