Start: 2025-12-13 01:02:34 GMT [oldstable] Package: gbrowse Version: 2.56+dfsg-11 Installed-Size: 7018 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, apache2 | httpd-cgi, bioperl, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description: GMOD Generic Genome Browser Multi-Arch: foreign Homepage: http://gmod.org/wiki/GBrowse Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-11_all.deb Size: 2375328 MD5sum: aad585880c9040e7f9e9a5e688eab5b8 SHA256: 62905c963c60f04b91a1a95b8d5bf927832d7df393da58efd28948a6e71ae3be [stable] Package: gbrowse Version: 2.56+dfsg-12 Installed-Size: 7017 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, apache2 | httpd-cgi, bioperl, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description: GMOD Generic Genome Browser Multi-Arch: foreign Homepage: http://gmod.org/wiki/GBrowse Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-12_all.deb Size: 2373356 MD5sum: 81db6eca72d37e4f56e576b56de9016c SHA256: 4748d1d64694ed69f2190d6aab749f3ecbdeb9c0876a0f904541b5be43315f34 [testing] [sid] Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt gbrowse=None 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt gbrowse=None 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-41-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.158-1 (2025-11-09) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpaat97elz 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpaat97elz 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpaat97elz', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpaat97elz', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpaat97elz/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpaat97elz/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpaat97elz/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-get', 'update'] 0m1.4s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-get', 'update'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.3s DUMP: 7ec3a68e34ef928e31b3b606406d4b66 - 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.3s INFO: Running scripts post_setup 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_dummy_users'] 0m3.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_dummy_users'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_zz_backports'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_setup_zz_backports'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.1s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u12 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b9 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u2 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14+deb12u1 install ok installed gpgv gpgv 2.2.40-1.1+deb12u1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2+deb12u1 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u13 install ok installed libc6:amd64 libc6 2.36-9+deb12u13 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4+deb12u2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14+deb12u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u3 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u3 install ok installed libss2:amd64 libss2 1.47.0-2+b2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14+deb12u1 install ok installed libsystemd0:amd64 libsystemd0 252.39-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.39-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+deb12u1 install ok installed logsave logsave 1.47.0-2+b2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u3 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u3 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2025b-0+deb12u2 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u3 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u3 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat 0m3.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaat97elz'] 0m3.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaat97elz'] 0m3.5s INFO: Running scripts is_testable 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/is_testable_uninstallable'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/is_testable_uninstallable'] 0m3.5s INFO: Running scripts pre_test 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_test_exceptions'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_test_exceptions'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_test_root_password'] 0m3.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_test_root_password'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 0m3.7s DUMP: Package: gbrowse Version: 2.56+dfsg-11 Installed-Size: 7018 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, apache2 | httpd-cgi, bioperl, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description-en: GMOD Generic Genome Browser Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). Some of its features: * Simultaneous bird's eye and detailed views of the genome; * Scroll, zoom, center; * Attach arbitrary URLs to any annotation; * Order and appearance of tracks are customizable by administrator and end-user; * Search by annotation ID, name, or comment; * Supports third party annotation using GFF formats; * Settings persist across sessions; * DNA and GFF dumps; * Connectivity to different databases, including BioSQL and Chado; * Multi-language support; * Third-party feature loading; * Customizable plug-in architecture (e.g. run BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features). Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Multi-Arch: foreign Homepage: http://gmod.org/wiki/GBrowse Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-11_all.deb Size: 2375328 MD5sum: aad585880c9040e7f9e9a5e688eab5b8 SHA256: 62905c963c60f04b91a1a95b8d5bf927832d7df393da58efd28948a6e71ae3be 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 0m3.7s INFO: apt-cache knows about the following packages: gbrowse 0m3.7s INFO: Running scripts pre_install 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_database-server'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_database-server'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_exceptions'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_extras'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_extras'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-cache', 'policy'] 0m3.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.12,o=Debian,a=oldstable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-cache', 'policy'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-cache', 'policy', 'gbrowse'] 0m3.8s DUMP: gbrowse: Installed: (none) Candidate: 2.56+dfsg-11 Version table: 2.56+dfsg-11 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-cache', 'policy', 'gbrowse'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-get', '-y', 'install', 'gbrowse'] 0m18.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: apache2 apache2-bin apache2-data apache2-utils bioperl ca-certificates fontconfig-config fonts-dejavu-core libabsl20220623 libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libaom3 libapache-dbi-perl libapache2-mod-perl2 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libavif15 libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libbrotli1 libbsd0 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl libclass-data-inheritable-perl libclone-perl libcommon-sense-perl libcurl4 libdata-stag-perl libdav1d6 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libde265-0 libdeflate0 libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-listing-perl libfontconfig1 libfreetype6 libgav1-1 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgssapi-krb5-2 libheif1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl libjansson4 libjbig0 libjpeg62-turbo libjs-prototype libjs-scriptaculous libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libncursesw6 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libnuma1 libperl5.36 libpng16-16 libpq5 libproc2-0 libpsl5 librav1e0 libreadline8 libregexp-ipv6-perl librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstatistics-descriptive-perl libstring-approx-perl libsub-uplevel-perl libsvtav1enc1 libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtiff6 libtimedate-perl libtry-tiny-perl liburi-perl libvm-ec2-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 libyuv0 media-types netbase openssl perl perl-modules-5.36 perl-openssl-defaults procps readline-common sensible-utils sqlite3 ucf Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser groff-base gbrowse-data gbrowse-calign libfile-nfslock-perl libev-perl libevent-perl libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl libmldbm-perl libnet-daemon-perl libsql-statement-perl libgd-tools gdbm-l10n krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libsub-name-perl libbusiness-isbn-perl libauthen-ntlm-perl perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl debhelper readline-doc sqlite3-doc Recommended packages: ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl libalgorithm-diff-xs-perl libasync-interrupt-perl libev-perl | libevent-perl libguard-perl libapache2-reload-perl libbsd-resource-perl libbio-scf-perl libberkeleydb-perl libgd-svg-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-mysql-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl libfreezethaw-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl libhtml-format-perl javascript-common libjson-xs-perl krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libdata-dump-perl libhtml-form-perl libmailtools-perl libxml-sax-expat-perl psmisc The following NEW packages will be installed: apache2 apache2-bin apache2-data apache2-utils bioperl ca-certificates fontconfig-config fonts-dejavu-core gbrowse libabsl20220623 libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libaom3 libapache-dbi-perl libapache2-mod-perl2 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libavif15 libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libbrotli1 libbsd0 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl libclass-data-inheritable-perl libclone-perl libcommon-sense-perl libcurl4 libdata-stag-perl libdav1d6 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libde265-0 libdeflate0 libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-listing-perl libfontconfig1 libfreetype6 libgav1-1 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgssapi-krb5-2 libheif1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl libjansson4 libjbig0 libjpeg62-turbo libjs-prototype libjs-scriptaculous libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libncursesw6 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libnuma1 libperl5.36 libpng16-16 libpq5 libproc2-0 libpsl5 librav1e0 libreadline8 libregexp-ipv6-perl librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstatistics-descriptive-perl libstring-approx-perl libsub-uplevel-perl libsvtav1enc1 libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtiff6 libtimedate-perl libtry-tiny-perl liburi-perl libvm-ec2-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 libyuv0 media-types netbase openssl perl perl-modules-5.36 perl-openssl-defaults procps readline-common sensible-utils sqlite3 ucf 0 upgraded, 152 newly installed, 0 to remove and 0 not upgraded. Need to get 54.2 MB of archives. After this operation, 210 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u3 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u3 [4196 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u3 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libapr1 amd64 1.7.2-3+deb12u1 [102 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1+deb12u2 [99.9 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.17-1~deb12u2 [2027 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libaprutil1 amd64 1.6.3-1 [87.8 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2+deb12u2 [839 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.3-1 [13.6 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libaprutil1-ldap amd64 1.6.3-1 [11.8 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u4 [33.2 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u4 [79.8 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:20 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u4 [334 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u4 [135 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u2 [73.0 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u14 [392 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 liblua5.3-0 amd64 5.3.6-2 [123 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3+deb12u1 [9376 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u4 [687 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 apache2-bin amd64 2.4.65-1~deb12u1 [1396 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 apache2-data all 2.4.65-1~deb12u1 [160 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 apache2-utils amd64 2.4.65-1~deb12u1 [214 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 apache2 amd64 2.4.65-1~deb12u1 [228 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 netbase all 6.4 [12.8 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.17-1~deb12u2 [1430 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311+deb12u1 [155 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1+deb12u1 [55.3 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:49 http://deb.debian.org/debian bookworm/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libtest-differences-perl all 0.69-1 [18.9 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 bioperl all 1.7.8-1 [246 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1+deb12u2 [1850 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2+deb12u1 [513 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1+deb12u2 [391 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20230123.b2528b0-1 [168 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1+deb12u1 [94.4 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u4 [398 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1+deb12u2 [185 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1+deb12u1 [215 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u2 [316 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb12u1 [48.6 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-9 [124 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libgd-perl amd64 2.76-4+b1 [132 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:95 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:110 http://deb.debian.org/debian bookworm/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libwww-perl all 6.68-1 [186 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 libapache2-mod-perl2 amd64 2.0.12-1+b2 [879 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libdbi-perl amd64 1.643-4 [773 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libapache-dbi-perl all 1.12-3 [48.5 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libcgi-pm-perl all 4.55-1 [220 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libbio-db-gff-perl all 1.7.4-1 [273 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libpq5 amd64 15.14-0+deb12u1 [194 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libdbd-pg-perl amd64 3.16.0-2 [209 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libdbd-sqlite3-perl amd64 1.72-1 [179 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libbio-db-seqfeature-perl all 1.7.4-2 [169 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libbio-graphics-perl all 2.40-6 [610 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libbio-coordinate-perl all 1.7.1-4 [56.7 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libcgi-session-perl all 4.48-4 [118 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libexporter-tiny-perl all 1.006000-1 [38.6 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 liblist-moreutils-xs-perl amd64 0.430-3+b1 [42.1 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libstatistics-descriptive-perl all 3.0800-1 [65.6 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 sqlite3 amd64 3.40.1-2+deb12u2 [353 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libjs-prototype all 1.7.3-1 [44.3 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libjs-scriptaculous all 1.9.0-3 [110 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libanyevent-perl amd64 7.170-2+b3 [394 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libanyevent-cachedns-perl all 0.08-3 [7708 B] Get:143 http://deb.debian.org/debian bookworm/main amd64 libcommon-sense-perl amd64 3.75-3 [23.0 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 libanyevent-http-perl all 2.25-2 [35.2 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libstring-approx-perl amd64 3.28-2+b1 [38.9 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libvm-ec2-perl all 1.28-4 [760 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 gbrowse all 2.56+dfsg-11 [2375 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.2 MB in 1s (69.8 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6099 files and directories currently installed.) Preparing to unpack .../000-perl-modules-5.36_5.36.0-7+deb12u3_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../001-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../002-libgdbm-compat4_1.23-3_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-3) ... Selecting previously unselected package libperl5.36:amd64. Preparing to unpack .../003-libperl5.36_5.36.0-7+deb12u3_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-7+deb12u3) ... Selecting previously unselected package perl. Preparing to unpack .../004-perl_5.36.0-7+deb12u3_amd64.deb ... Unpacking perl (5.36.0-7+deb12u3) ... Selecting previously unselected package libapr1:amd64. Preparing to unpack .../005-libapr1_1.7.2-3+deb12u1_amd64.deb ... Unpacking libapr1:amd64 (1.7.2-3+deb12u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../006-libexpat1_2.5.0-1+deb12u2_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1+deb12u2) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../007-libssl3_3.0.17-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.17-1~deb12u2) ... Selecting previously unselected package libaprutil1:amd64. Preparing to unpack .../008-libaprutil1_1.6.3-1_amd64.deb ... Unpacking libaprutil1:amd64 (1.6.3-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../009-libsqlite3-0_3.40.1-2+deb12u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-2+deb12u2) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:amd64. Preparing to unpack .../010-libaprutil1-dbd-sqlite3_1.6.3-1_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.6.3-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../011-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../012-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. 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Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../019-libkrb5-3_1.20.1-2+deb12u4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../020-libgssapi-krb5-2_1.20.1-2+deb12u4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u4) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../021-libnghttp2-14_1.52.0-1+deb12u2_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1+deb12u2) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../022-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../023-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... 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Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u4) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../030-apache2-bin_2.4.65-1~deb12u1_amd64.deb ... Unpacking apache2-bin (2.4.65-1~deb12u1) ... Selecting previously unselected package apache2-data. Preparing to unpack .../031-apache2-data_2.4.65-1~deb12u1_all.deb ... Unpacking apache2-data (2.4.65-1~deb12u1) ... Selecting previously unselected package apache2-utils. Preparing to unpack .../032-apache2-utils_2.4.65-1~deb12u1_amd64.deb ... Unpacking apache2-utils (2.4.65-1~deb12u1) ... Selecting previously unselected package media-types. Preparing to unpack .../033-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../034-libncursesw6_6.4-4_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../035-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../036-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package apache2. Preparing to unpack .../037-apache2_2.4.65-1~deb12u1_amd64.deb ... Unpacking apache2 (2.4.65-1~deb12u1) ... Selecting previously unselected package netbase. Preparing to unpack .../038-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../039-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../040-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../041-openssl_3.0.17-1~deb12u2_amd64.deb ... Unpacking openssl (3.0.17-1~deb12u2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../042-ca-certificates_20230311+deb12u1_all.deb ... Unpacking ca-certificates (20230311+deb12u1) ... Selecting previously unselected package ucf. Preparing to unpack .../043-ucf_3.0043+nmu1+deb12u1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1+deb12u1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../045-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../046-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../047-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../048-libdevel-stacktrace-perl_2.0400-2_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-2) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../049-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../050-libtest-deep-perl_1.204-1_all.deb ... Unpacking libtest-deep-perl (1.204-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../051-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../052-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../053-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../054-libtest-differences-perl_0.69-1_all.deb ... Unpacking libtest-differences-perl (0.69-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../055-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../056-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../057-libtest-warn-perl_0.37-2_all.deb ... Unpacking libtest-warn-perl (0.37-2) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../058-libtest-most-perl_0.38-1_all.deb ... Unpacking libtest-most-perl (0.38-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../059-bioperl_1.7.8-1_all.deb ... Unpacking bioperl (1.7.8-1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../060-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../061-fontconfig-config_2.14.1-4_amd64.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libaom3:amd64. Preparing to unpack .../062-libaom3_3.6.0-1+deb12u2_amd64.deb ... Unpacking libaom3:amd64 (3.6.0-1+deb12u2) ... Selecting previously unselected package libdav1d6:amd64. Preparing to unpack .../063-libdav1d6_1.0.0-2+deb12u1_amd64.deb ... Unpacking libdav1d6:amd64 (1.0.0-2+deb12u1) ... Selecting previously unselected package libabsl20220623:amd64. 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Setting up sqlite3 (3.40.1-2+deb12u2) ... Setting up apache2-utils (2.4.65-1~deb12u1) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Setting up libheif1:amd64 (1.15.1-1+deb12u1) ... Setting up libpq5:amd64 (15.14-0+deb12u1) ... Setting up libaprutil1-ldap:amd64 (1.6.3-1) ... Setting up perl (5.36.0-7+deb12u3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libgd3:amd64 (2.3.3-9) ... Setting up libio-html-perl (1.004-3) ... Setting up liblist-moreutils-xs-perl (0.430-3+b1) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libjson-perl (4.10000-1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libexporter-tiny-perl (1.006000-1) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up liburi-perl (5.17-1) ... Setting up libdbi-perl:amd64 (1.643-4) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libanyevent-perl (7.170-2+b3) ... Setting up libstring-approx-perl (3.28-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libcommon-sense-perl:amd64 (3.75-3) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libanyevent-http-perl (2.25-2) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libdbd-pg-perl (3.16.0-2) ... Setting up libexception-class-perl (1.45-1) ... Setting up apache2-bin (2.4.65-1~deb12u1) ... Setting up libgd-perl (2.76-4+b1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libanyevent-cachedns-perl (0.08-3) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up libdbd-sqlite3-perl:amd64 (1.72-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libstatistics-descriptive-perl (3.0800-1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up apache2 (2.4.65-1~deb12u1) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libcgi-pm-perl (4.55-1) ... Setting up libtest-differences-perl (0.69-1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcgi-session-perl (4.48-4) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-daemon-perl (6.16-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up bioperl (1.7.8-1) ... Setting up libbio-coordinate-perl (1.7.1-4) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libwww-perl (6.68-1) ... Setting up libapache2-mod-perl2 (2.0.12-1+b2) ... apache2_invoke: Enable module perl invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libbio-db-biofetch-perl (1.7.3-4) ... Setting up libvm-ec2-perl (1.28-4) ... Setting up libapache-dbi-perl (1.12-3) ... Setting up libbio-db-gff-perl (1.7.4-1) ... Setting up libbio-db-seqfeature-perl (1.7.4-2) ... Setting up libbio-graphics-perl (2.40-6) ... Setting up gbrowse (2.56+dfsg-11) ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Processing triggers for libc-bin (2.36-9+deb12u13) ... Processing triggers for ca-certificates (20230311+deb12u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-get', '-y', 'install', 'gbrowse'] 0m18.6s INFO: Running scripts post_install 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_install_exceptions'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/post_install_exceptions'] 0m18.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaat97elz'] 0m19.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaat97elz'] 0m19.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpaat97elz to stable 0m19.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m19.4s INFO: Running scripts pre_distupgrade 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_exceptions'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_exceptions'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-get', 'update'] 60m19.4s ERROR: Terminating command due to excessive runtime 60m19.9s DUMP: ***** Command was terminated after exceeding runtime limit (3600 s) ***** 60m19.9s ERROR: Command failed (status=-15): ['chroot', '/srv/piuparts.debian.org/tmp/tmpaat97elz', 'apt-get', 'update'] ***** Command was terminated after exceeding runtime limit (3600 s) ***** 60m20.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/shm'] 60m20.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/shm'] 60m20.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/console'] 60m20.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/console'] 60m20.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/ptmx'] 60m20.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/ptmx'] 60m20.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/pts'] 60m20.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/dev/pts'] 60m20.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/proc'] 60m20.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaat97elz/proc'] 60m20.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpaat97elz'] 60m20.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpaat97elz'] 60m20.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpaat97elz 60m20.9s ERROR: piuparts run ends. ret=1 End: 2025-12-13 02:02:55 GMT