Start: 2026-05-29 16:19:13 GMT [oldstable] Package: libhtsjdk-java Source: htsjdk Version: 3.0.4+dfsg-2 Installed-Size: 1975 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-compress-java, libcommons-jexl2-java, libmjson-java, libngs-java, librhino-java, libsnappy-java Suggests: picard-tools, python3 Description: Java API for high-throughput sequencing data (HTS) formats Homepage: https://samtools.github.io/htsjdk/ Description-md5: af3d0552d0d6d0c31899271354b48622 Section: java Priority: optional Filename: pool/main/h/htsjdk/libhtsjdk-java_3.0.4+dfsg-2_all.deb Size: 1813244 MD5sum: 3375151baf60e103b9d2d83d44ecd7ab SHA256: 4024248694b59fbd4ee7d4433ec91d83cf0c0f2ef7c4f6b4a0d551cda8c1158c [stable] Package: libhtsjdk-java Source: htsjdk Version: 4.1.3+dfsg-2 Installed-Size: 1997 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-compress-java, libcommons-jexl2-java, libjson-java, libngs-java, librhino-java, libsnappy-java Suggests: picard-tools, python3 Description: Java API for high-throughput sequencing data (HTS) formats Homepage: https://samtools.github.io/htsjdk/ Description-md5: af3d0552d0d6d0c31899271354b48622 Section: java Priority: optional Filename: pool/main/h/htsjdk/libhtsjdk-java_4.1.3+dfsg-2_all.deb Size: 1840824 MD5sum: 30ccfec96415a8a612f3f90b8cd72a3e SHA256: 6e423973aa8c81ccbbed5c50802e209c1898ed68d010471531fa4d00f2470d92 [testing] Package: libhtsjdk-java Source: htsjdk Version: 4.3.0+dfsg-1 Installed-Size: 2075 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-compress-java, libcommons-jexl2-java, libjson-java, libngs-java, librhino-java, libsnappy-java Suggests: picard-tools, python3 Description: Java API for high-throughput sequencing data (HTS) formats Homepage: https://samtools.github.io/htsjdk/ Description-md5: af3d0552d0d6d0c31899271354b48622 Section: java Priority: optional Filename: pool/main/h/htsjdk/libhtsjdk-java_4.3.0+dfsg-1_all.deb Size: 1912364 MD5sum: de61c77fac14d51b8aa9cc3313d5c0c1 SHA256: 3732b85bf2e15cca8cf087aadb44636b60018e03752235405c795e97629cd2d8 [sid] Package: libhtsjdk-java Source: htsjdk Version: 5.0.0+dfsg-1 Installed-Size: 2088 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-compress-java, libcommons-jexl2-java, libjson-java, libngs-java, librhino-java, libsnappy-java Suggests: picard-tools, python3 Description: Java API for high-throughput sequencing data (HTS) formats Homepage: https://samtools.github.io/htsjdk/ Description-md5: af3d0552d0d6d0c31899271354b48622 Section: java Priority: optional Filename: pool/main/h/htsjdk/libhtsjdk-java_5.0.0+dfsg-1_all.deb Size: 1928588 MD5sum: 239db1c3968b15dbbf0d5ba59587f8a2 SHA256: 10201f4aab0065320919ee46dd8603c1871c34933927ead0dedf1260c7024d56 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt libhtsjdk-java=5.0.0+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt libhtsjdk-java=5.0.0+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-48-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.172-1 (2026-05-15) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpmkn471xj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpmkn471xj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/proc'] 0m0.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/proc'] 0m0.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/pts'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/pts'] 0m0.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/ptmx'] 0m0.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/ptmx'] 0m0.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/console'] 0m0.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/console'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/shm'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/shm'] 0m0.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.7s DEBUG: Created policy-rc.d and chmodded it. 0m0.7s DEBUG: Created resolv.conf. 0m0.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpmkn471xj/tmp/scripts/ 0m0.7s INFO: Running scripts post_chroot_unpack 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-get', 'update'] 0m3.8s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8790 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6107 kB] Fetched 15.0 MB in 2s (6745 kB/s) Reading package lists... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-get', 'update'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-get', '-yf', 'dist-upgrade'] 0m7.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files bash dpkg libc-bin libc6 libcap2 libgnutls30 libsystemd0 libudev1 sed tzdata 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 9008 kB of archives. After this operation, 20.5 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u14 [70.9 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.2.15-2+b13 [1491 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.23 [1568 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 sed amd64 4.9-1+deb12u1 [329 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u14 [2759 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u14 [609 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libcap2 amd64 1:2.66-4+deb12u3+b1 [27.7 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u6 [1408 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.39-1~deb12u2 [332 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.39-1~deb12u2 [109 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2026b-0+deb12u1 [304 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9008 kB in 0s (88.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../base-files_12.4+deb12u14_amd64.deb ... Unpacking base-files (12.4+deb12u14) over (12.4+deb12u13) ... Setting up base-files (12.4+deb12u14) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2+b13_amd64.deb ... Unpacking bash (5.2.15-2+b13) over (5.2.15-2+b10) ... Setting up bash (5.2.15-2+b13) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.23_amd64.deb ... Unpacking dpkg (1.21.23) over (1.21.22) ... Setting up dpkg (1.21.23) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../sed_4.9-1+deb12u1_amd64.deb ... Unpacking sed (4.9-1+deb12u1) over (4.9-1) ... Setting up sed (4.9-1+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../libc6_2.36-9+deb12u14_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u14) over (2.36-9+deb12u13) ... Setting up libc6:amd64 (2.36-9+deb12u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u14_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u14) over (2.36-9+deb12u13) ... Setting up libc-bin (2.36-9+deb12u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-4+deb12u3+b1_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-4+deb12u3+b1) over (1:2.66-4+deb12u2+b2) ... Setting up libcap2:amd64 (1:2.66-4+deb12u3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.9-2+deb12u6_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.9-2+deb12u6) over (3.7.9-2+deb12u5) ... Setting up libgnutls30:amd64 (3.7.9-2+deb12u6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.39-1~deb12u2_amd64.deb ... Unpacking libsystemd0:amd64 (252.39-1~deb12u2) over (252.39-1~deb12u1) ... Setting up libsystemd0:amd64 (252.39-1~deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../libudev1_252.39-1~deb12u2_amd64.deb ... Unpacking libudev1:amd64 (252.39-1~deb12u2) over (252.39-1~deb12u1) ... Setting up libudev1:amd64 (252.39-1~deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../tzdata_2026b-0+deb12u1_all.deb ... Unpacking tzdata (2026b-0+deb12u1) over (2025b-0+deb12u2) ... Setting up tzdata (2026b-0+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri May 29 16:19:20 UTC 2026. Universal Time is now: Fri May 29 16:19:20 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.36-9+deb12u14) ... Processing triggers for debianutils (5.7-0.5~deb12u1) ... 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-get', '-yf', 'dist-upgrade'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s DUMP: 86fd3e9edd1bee367809092b840ad886 - 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s INFO: Running scripts post_setup 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_dummy_users'] 0m9.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_dummy_users'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_forbid_home'] 0m9.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_forbid_home'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_minimize'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_minimize'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_zz_backports'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_setup_zz_backports'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.2s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u14 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b13 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u2 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.23 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14+deb12u1 install ok installed gpgv gpgv 2.2.40-1.1+deb12u2 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2+deb12u1 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u14 install ok installed libc6:amd64 libc6 2.36-9+deb12u14 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4+deb12u3+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14+deb12u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u6 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u3 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u2 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u2 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u3 install ok installed libss2:amd64 libss2 1.47.0-2+b2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14+deb12u1 install ok installed libsystemd0:amd64 libsystemd0 252.39-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.39-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+deb12u2 install ok installed logsave logsave 1.47.0-2+b2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u3 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+deb12u2 install ok installed perl-base perl-base 5.36.0-7+deb12u3 install ok installed sed sed 4.9-1+deb12u1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2026b-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u3 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u3 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat 0m9.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmkn471xj'] 0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmkn471xj'] 0m9.9s INFO: Running scripts is_testable 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/is_testable_uninstallable'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/is_testable_uninstallable'] 0m9.9s INFO: Running scripts pre_test 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_test_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_test_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_test_root_password'] 0m10.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_test_root_password'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-cache', 'show', '--no-all-versions', 'libhtsjdk-java'] 0m10.3s DUMP: Package: libhtsjdk-java Source: htsjdk Version: 3.0.4+dfsg-2 Installed-Size: 1975 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-compress-java, libcommons-jexl2-java, libmjson-java, libngs-java, librhino-java, libsnappy-java Suggests: picard-tools, python3 Description-en: Java API for high-throughput sequencing data (HTS) formats HTSJDK is an implementation of a unified Java library for accessing common file formats, such as SAM (Sequence Alignment/Map) and VCF, used for high-throughput sequencing data. There are also an number of useful utilities for manipulating HTS data. Description-md5: af3d0552d0d6d0c31899271354b48622 Homepage: https://samtools.github.io/htsjdk/ Section: java Priority: optional Filename: pool/main/h/htsjdk/libhtsjdk-java_3.0.4+dfsg-2_all.deb Size: 1813244 MD5sum: 3375151baf60e103b9d2d83d44ecd7ab SHA256: 4024248694b59fbd4ee7d4433ec91d83cf0c0f2ef7c4f6b4a0d551cda8c1158c 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-cache', 'show', '--no-all-versions', 'libhtsjdk-java'] 0m10.3s INFO: apt-cache knows about the following packages: libhtsjdk-java 0m10.3s INFO: Running scripts pre_install 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-cache', 'policy'] 0m10.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.14,o=Debian,a=oldstable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-cache', 'policy'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-cache', 'policy', 'libhtsjdk-java'] 0m10.4s DUMP: libhtsjdk-java: Installed: (none) Candidate: 3.0.4+dfsg-2 Version table: 3.0.4+dfsg-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-cache', 'policy', 'libhtsjdk-java'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-get', '-y', 'install', 'libhtsjdk-java'] 0m13.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libapache-pom-java libcommons-compress-java libcommons-jexl2-java libcommons-logging-java libcommons-parent-java libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni librhino-java libsnappy-java libsnappy-jni libsnappy1v5 ncbi-vdb-data Suggested packages: libasm-java libxz-java libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java picard-tools python3 libngs-java-doc rhino The following NEW packages will be installed: libapache-pom-java libcommons-compress-java libcommons-jexl2-java libcommons-logging-java libcommons-parent-java libhtsjdk-java libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni librhino-java libsnappy-java libsnappy-jni libsnappy1v5 ncbi-vdb-data 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. Need to get 6292 kB of archives. After this operation, 10.8 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get:2 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libcommons-compress-java all 1.22-1 [615 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libcommons-logging-java all 1.2-3 [62.4 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libmjson-java all 1.4.0-3 [60.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libmbedcrypto7 amd64 2.28.3-1 [277 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libmbedx509-1 amd64 2.28.3-1 [128 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libmbedtls14 amd64 2.28.3-1 [163 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libncbi-vdb3 amd64 3.0.2+dfsg-2 [1050 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libncbi-ngs3 amd64 3.0.3+dfsg-6~deb12u1 [154 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libngs-jni amd64 3.0.3+dfsg-6~deb12u1 [23.5 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libngs-java amd64 3.0.3+dfsg-6~deb12u1 [110 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 librhino-java all 1.7.14-2.1 [1357 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libsnappy1v5 amd64 1.1.9-3 [26.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libsnappy-jni amd64 1.1.8.3-1 [7152 B] Get:18 http://deb.debian.org/debian bookworm/main amd64 libsnappy-java all 1.1.8.3-1 [98.9 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libhtsjdk-java all 3.0.4+dfsg-2 [1813 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6292 kB in 2s (4120 kB/s) Selecting previously unselected package libapache-pom-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6100 files and directories currently installed.) Preparing to unpack .../00-libapache-pom-java_29-2_all.deb ... Unpacking libapache-pom-java (29-2) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../01-libcommons-parent-java_56-1_all.deb ... Unpacking libcommons-parent-java (56-1) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../02-libcommons-compress-java_1.22-1_all.deb ... Unpacking libcommons-compress-java (1.22-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../03-libcommons-logging-java_1.2-3_all.deb ... Unpacking libcommons-logging-java (1.2-3) ... Selecting previously unselected package libcommons-jexl2-java. Preparing to unpack .../04-libcommons-jexl2-java_2.1.1-6_all.deb ... Unpacking libcommons-jexl2-java (2.1.1-6) ... Selecting previously unselected package libmjson-java. Preparing to unpack .../05-libmjson-java_1.4.0-3_all.deb ... Unpacking libmjson-java (1.4.0-3) ... Selecting previously unselected package libmbedcrypto7:amd64. Preparing to unpack .../06-libmbedcrypto7_2.28.3-1_amd64.deb ... Unpacking libmbedcrypto7:amd64 (2.28.3-1) ... Selecting previously unselected package libmbedx509-1:amd64. Preparing to unpack .../07-libmbedx509-1_2.28.3-1_amd64.deb ... Unpacking libmbedx509-1:amd64 (2.28.3-1) ... Selecting previously unselected package libmbedtls14:amd64. Preparing to unpack .../08-libmbedtls14_2.28.3-1_amd64.deb ... Unpacking libmbedtls14:amd64 (2.28.3-1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../09-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../10-libncbi-vdb3_3.0.2+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.0.2+dfsg-2) ... Selecting previously unselected package libncbi-ngs3:amd64. Preparing to unpack .../11-libncbi-ngs3_3.0.3+dfsg-6~deb12u1_amd64.deb ... Unpacking libncbi-ngs3:amd64 (3.0.3+dfsg-6~deb12u1) ... Selecting previously unselected package libngs-jni:amd64. Preparing to unpack .../12-libngs-jni_3.0.3+dfsg-6~deb12u1_amd64.deb ... Unpacking libngs-jni:amd64 (3.0.3+dfsg-6~deb12u1) ... Selecting previously unselected package libngs-java:amd64. Preparing to unpack .../13-libngs-java_3.0.3+dfsg-6~deb12u1_amd64.deb ... Unpacking libngs-java:amd64 (3.0.3+dfsg-6~deb12u1) ... Selecting previously unselected package librhino-java. Preparing to unpack .../14-librhino-java_1.7.14-2.1_all.deb ... Unpacking librhino-java (1.7.14-2.1) ... Selecting previously unselected package libsnappy1v5:amd64. Preparing to unpack .../15-libsnappy1v5_1.1.9-3_amd64.deb ... Unpacking libsnappy1v5:amd64 (1.1.9-3) ... Selecting previously unselected package libsnappy-jni. Preparing to unpack .../16-libsnappy-jni_1.1.8.3-1_amd64.deb ... Unpacking libsnappy-jni (1.1.8.3-1) ... Selecting previously unselected package libsnappy-java. Preparing to unpack .../17-libsnappy-java_1.1.8.3-1_all.deb ... Unpacking libsnappy-java (1.1.8.3-1) ... Selecting previously unselected package libhtsjdk-java. Preparing to unpack .../18-libhtsjdk-java_3.0.4+dfsg-2_all.deb ... Unpacking libhtsjdk-java (3.0.4+dfsg-2) ... Setting up libmjson-java (1.4.0-3) ... Setting up libsnappy1v5:amd64 (1.1.9-3) ... Setting up librhino-java (1.7.14-2.1) ... Setting up libmbedcrypto7:amd64 (2.28.3-1) ... Setting up libapache-pom-java (29-2) ... Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... Setting up libsnappy-jni (1.1.8.3-1) ... Setting up libmbedx509-1:amd64 (2.28.3-1) ... Setting up libmbedtls14:amd64 (2.28.3-1) ... Setting up libcommons-parent-java (56-1) ... Setting up libncbi-vdb3:amd64 (3.0.2+dfsg-2) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libncbi-ngs3:amd64 (3.0.3+dfsg-6~deb12u1) ... Setting up libngs-jni:amd64 (3.0.3+dfsg-6~deb12u1) ... Setting up libcommons-compress-java (1.22-1) ... Setting up libngs-java:amd64 (3.0.3+dfsg-6~deb12u1) ... Setting up libhtsjdk-java (3.0.4+dfsg-2) ... Processing triggers for libc-bin (2.36-9+deb12u14) ... 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-get', '-y', 'install', 'libhtsjdk-java'] 0m13.8s INFO: Running scripts post_install 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_install_exceptions'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/post_install_exceptions'] 0m13.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmkn471xj'] 0m14.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmkn471xj'] 0m14.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpmkn471xj to stable 0m14.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m14.5s INFO: Running scripts pre_distupgrade 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-get', 'update'] 60m14.8s ERROR: Terminating command due to excessive runtime 60m15.3s DUMP: ***** Command was terminated after exceeding runtime limit (3600 s) ***** 60m15.3s ERROR: Command failed (status=-15): ['chroot', '/srv/piuparts.debian.org/tmp/tmpmkn471xj', 'apt-get', 'update'] ***** Command was terminated after exceeding runtime limit (3600 s) ***** 60m15.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/shm'] 60m15.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/shm'] 60m15.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/console'] 60m15.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/console'] 60m15.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/ptmx'] 60m15.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/ptmx'] 60m15.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/pts'] 60m15.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/dev/pts'] 60m15.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/proc'] 60m15.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmkn471xj/proc'] 60m15.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmkn471xj'] 60m15.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmkn471xj'] 60m15.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpmkn471xj 60m15.9s ERROR: piuparts run ends. ret=1 End: 2026-05-29 17:19:30 GMT