Start: 2025-03-26 17:44:00 GMT
[oldstable]
Package: python3-fast5
Source: fast5 (0.6.5-4)
Version: 0.6.5-4+b4
Installed-Size: 758
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libhdf5-103-1, libstdc++6 (>= 9), python3 (<< 3.10), python3 (>= 3.9~)
Description: library for reading Oxford Nanopore Fast5 files -- Python 3
Homepage: https://github.com/mateidavid/fast5
Description-md5: 958ed5394333b52acc452eb50a652b9b
Section: python
Priority: optional
Filename: pool/main/f/fast5/python3-fast5_0.6.5-4+b4_amd64.deb
Size: 217252
MD5sum: 21ef6e39e51c77eb5f6136b1e1d358f5
SHA256: 57d034cc1c79d4e38bc6f7d2ece0253bab4421b98ea8aa24943669959dfc97ce
[stable]
Package: python3-fast5
Source: fast5 (0.6.5-7)
Version: 0.6.5-7+b3
Installed-Size: 778
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libhdf5-103-1, libstdc++6 (>= 11), python3 (<< 3.12), python3 (>= 3.11~)
Description: library for reading Oxford Nanopore Fast5 files -- Python 3
Multi-Arch: same
Homepage: https://github.com/mateidavid/fast5
Description-md5: 958ed5394333b52acc452eb50a652b9b
Section: python
Priority: optional
Filename: pool/main/f/fast5/python3-fast5_0.6.5-7+b3_amd64.deb
Size: 226560
MD5sum: 2e49364c95fddae66aec25add2145170
SHA256: f4a34def462d3ae2d9813761cb112f5df5bb9cda4103dcd10a599db570c6704c
[testing]
Package: python3-fast5
Source: fast5 (0.6.5-9)
Version: 0.6.5-9+b2
Installed-Size: 900
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libhdf5-310 (>= 1.14.3), libstdc++6 (>= 14), python3 (<< 3.14), python3 (>= 3.13~)
Description: library for reading Oxford Nanopore Fast5 files -- Python 3
Multi-Arch: same
Homepage: https://github.com/mateidavid/fast5
Description-md5: 958ed5394333b52acc452eb50a652b9b
Section: python
Priority: optional
Filename: pool/main/f/fast5/python3-fast5_0.6.5-9+b2_amd64.deb
Size: 254796
MD5sum: cb4b7ad7b6062a41f165fa64d81a8ea2
SHA256: 90850c1690e7bc8d36643682bc4c26f578d91f22ec8b7b43aecd7b07fdd18a2b
[sid]
Package: python3-fast5
Source: fast5 (0.6.5-9)
Version: 0.6.5-9+b2
Installed-Size: 900
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libhdf5-310 (>= 1.14.3), libstdc++6 (>= 14), python3 (<< 3.14), python3 (>= 3.13~)
Description: library for reading Oxford Nanopore Fast5 files -- Python 3
Multi-Arch: same
Homepage: https://github.com/mateidavid/fast5
Description-md5: 958ed5394333b52acc452eb50a652b9b
Section: python
Priority: optional
Filename: pool/main/f/fast5/python3-fast5_0.6.5-9+b2_amd64.deb
Size: 254796
MD5sum: cb4b7ad7b6062a41f165fa64d81a8ea2
SHA256: 90850c1690e7bc8d36643682bc4c26f578d91f22ec8b7b43aecd7b07fdd18a2b
Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt python3-fast5=0.6.5-9+b2
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt python3-fast5=0.6.5-9+b2
0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpq7jyynrj
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpq7jyynrj
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz']
0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz']
0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/proc']
0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/proc']
0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/pts']
0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/pts']
0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/ptmx']
0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/ptmx']
0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/console']
0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/console']
0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/shm']
0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/shm']
0m0.4s DEBUG: sources.list:
deb http://deb.debian.org/debian/ bullseye main
0m0.4s DEBUG: Created policy-rc.d and chmodded it.
0m0.4s DEBUG: Created resolv.conf.
0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpq7jyynrj/tmp/scripts/
0m0.4s INFO: Running scripts post_chroot_unpack
0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', 'update']
0m1.1s DUMP:
Hit:1 http://deb.debian.org/debian bullseye InRelease
Reading package lists...
0m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', 'update']
0m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-yf', 'dist-upgrade']
0m1.4s DUMP:
Reading package lists...
Building dependency tree...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-yf', 'dist-upgrade']
0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m1.7s DUMP:
f58ca9ba0b3223edf5b7797c101a5448 -
0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m1.7s INFO: Running scripts post_setup
0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_dummy_users']
0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_dummy_users']
0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_forbid_home']
0m2.6s DUMP:
Disabling /home
Adding 'local diversion of /home to /home.distrib'
0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_forbid_home']
0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_force-unsafe-io']
0m2.6s DUMP:
Enabling dpkg --force-unsafe-io.
Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
'/bin/sync' -> 'true'
0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_force-unsafe-io']
0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_minimize']
0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_minimize']
0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_squeeze-backports']
0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_squeeze-backports']
0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_zz_backports']
0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_setup_zz_backports']
0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m2.7s DUMP:
install ok installed adduser adduser 3.118+deb11u1
install ok installed apt apt 2.2.4
install ok installed base-files base-files 11.1+deb11u11
install ok installed base-passwd base-passwd 3.5.51
install ok installed bash bash 5.1-2+deb11u1
install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2
install ok installed coreutils coreutils 8.32-4+b1
install ok installed dash dash 0.5.11+git20200708+dd9ef66-5
install ok installed debconf debconf 1.5.77
install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1
install ok installed debianutils debianutils 4.11.2
install ok installed diffutils diffutils 1:3.7-5
install ok installed dpkg dpkg 1.20.13
install ok installed e2fsprogs e2fsprogs 1.46.2-2
install ok installed findutils findutils 4.8.0-1
install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6
install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22
install ok installed gpgv gpgv 2.2.27-2+deb11u2
install ok installed grep grep 3.6-1+deb11u1
install ok installed gzip gzip 1.10-4+deb11u1
install ok installed hostname hostname 3.23
install ok installed init-system-helpers init-system-helpers 1.60
install ok installed libacl1:amd64 libacl1 2.2.53-10
install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4
install ok installed libattr1:amd64 libattr1 1:2.4.48-6
install ok installed libaudit-common libaudit-common 1:3.0-2
install ok installed libaudit1:amd64 libaudit1 1:3.0-2
install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4
install ok installed libc-bin libc-bin 2.31-13+deb11u11
install ok installed libc6:amd64 libc6 2.31-13+deb11u11
install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1
install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4
install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260
install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2
install ok installed libffi7:amd64 libffi7 3.3-6
install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6
install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6
install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1
install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5
install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2
install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u5
install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1
install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5
install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u5
install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2
install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u5
install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u5
install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2
install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1
install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2
install ok installed libnettle8:amd64 libnettle8 3.7.3-1
install ok installed libnsl2:amd64 libnsl2 1.3.0-2
install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1
install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1
install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1
install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1
install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1
install ok installed libpcre3:amd64 libpcre3 2:8.39-13
install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1
install ok installed libselinux1:amd64 libselinux1 3.1-3
install ok installed libsemanage-common libsemanage-common 3.1-1
install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2
install ok installed libsepol1:amd64 libsepol1 3.1-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2
install ok installed libss2:amd64 libss2 1.46.2-2
install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1
install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6
install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5
install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1
install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2
install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1
install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1
install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5
install ok installed libunistring2:amd64 libunistring2 0.9.10-4
install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2
install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2
install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1
install ok installed login login 1:4.8.1-1
install ok installed logsave logsave 1.46.2-2
install ok installed lsb-base lsb-base 11.1.0
install ok installed mawk mawk 1.3.4.20200120-2
install ok installed mount mount 2.36.1-8+deb11u2
install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2
install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2
install ok installed passwd passwd 1:4.8.1-1
install ok installed perl-base perl-base 5.32.1-4+deb11u3
install ok installed sed sed 4.7-1
install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1
install ok installed tar tar 1.34+dfsg-1+deb11u1
install ok installed tzdata tzdata 2024a-0+deb11u1
install ok installed util-linux util-linux 2.36.1-8+deb11u2
install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2
0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m2.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat
0m2.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
0m3.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
0m3.2s INFO: Running scripts is_testable
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/is_testable_uninstallable']
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/is_testable_uninstallable']
0m3.2s INFO: Running scripts pre_test
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_test_exceptions']
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_test_exceptions']
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_test_root_password']
0m3.2s DUMP:
New password: Retype new password: passwd: password updated successfully
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_test_root_password']
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'show', '--no-all-versions', 'python3-fast5']
0m3.4s DUMP:
Package: python3-fast5
Source: fast5 (0.6.5-4)
Version: 0.6.5-4+b4
Installed-Size: 758
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libhdf5-103-1, libstdc++6 (>= 9), python3 (<< 3.10), python3 (>= 3.9~)
Description-en: library for reading Oxford Nanopore Fast5 files -- Python 3
A lightweight C++11 library to read raw signal data from Oxford
Nanopore's FAST5 files.
.
This package provides the Python 3 library
Description-md5: 958ed5394333b52acc452eb50a652b9b
Homepage: https://github.com/mateidavid/fast5
Section: python
Priority: optional
Filename: pool/main/f/fast5/python3-fast5_0.6.5-4+b4_amd64.deb
Size: 217252
MD5sum: 21ef6e39e51c77eb5f6136b1e1d358f5
SHA256: 57d034cc1c79d4e38bc6f7d2ece0253bab4421b98ea8aa24943669959dfc97ce
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'show', '--no-all-versions', 'python3-fast5']
0m3.4s INFO: apt-cache knows about the following packages: python3-fast5
0m3.4s INFO: Running scripts pre_install
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
0m3.5s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian bullseye/main amd64 Packages
release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
0m3.5s DUMP:
python3-fast5:
Installed: (none)
Candidate: 0.6.5-4+b4
Version table:
0.6.5-4+b4 500
500 http://deb.debian.org/debian bullseye/main amd64 Packages
0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5']
0m7.1s DUMP:
Reading package lists...
Building dependency tree...
The following additional packages will be installed:
libaec0 libexpat1 libhdf5-103-1 libmpdec3 libncursesw6 libpython3-stdlib
libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 libsz2
media-types python3 python3-minimal python3.9 python3.9-minimal
readline-common
Suggested packages:
python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binutils
binfmt-support readline-doc
Recommended packages:
libgpm2 ca-certificates
The following NEW packages will be installed:
libaec0 libexpat1 libhdf5-103-1 libmpdec3 libncursesw6 libpython3-stdlib
libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 libsz2
media-types python3 python3-fast5 python3-minimal python3.9
python3.9-minimal readline-common
0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
Need to get 7824 kB of archives.
After this operation, 27.7 MB of additional disk space will be used.
Get:1 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB]
Get:2 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB]
Get:3 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB]
Get:4 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB]
Get:5 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB]
Get:6 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB]
Get:7 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB]
Get:8 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB]
Get:9 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB]
Get:10 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB]
Get:11 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB]
Get:12 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB]
Get:13 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB]
Get:14 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB]
Get:15 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB]
Get:16 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B]
Get:17 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB]
Get:18 http://deb.debian.org/debian bullseye/main amd64 python3-fast5 amd64 0.6.5-4+b4 [217 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 7824 kB in 1s (12.3 MB/s)
Selecting previously unselected package libpython3.9-minimal:amd64.
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(Reading database ... 6674 files and directories currently installed.)
Preparing to unpack .../libpython3.9-minimal_3.9.2-1_amd64.deb ...
Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.2.10-2+deb11u5_amd64.deb ...
Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../python3.9-minimal_3.9.2-1_amd64.deb ...
Unpacking python3.9-minimal (3.9.2-1) ...
Setting up libpython3.9-minimal:amd64 (3.9.2-1) ...
Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ...
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Selecting previously unselected package python3-minimal.
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Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_4.0.0_all.deb ...
Unpacking media-types (4.0.0) ...
Selecting previously unselected package libmpdec3:amd64.
Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ...
Unpacking libmpdec3:amd64 (2.5.1-1) ...
Selecting previously unselected package libncursesw6:amd64.
Preparing to unpack .../3-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ...
Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ...
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Preparing to unpack .../4-readline-common_8.1-1_all.deb ...
Unpacking readline-common (8.1-1) ...
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Unpacking libsqlite3-0:amd64 (3.34.1-3) ...
Selecting previously unselected package libpython3.9-stdlib:amd64.
Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_amd64.deb ...
Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../8-python3.9_3.9.2-1_amd64.deb ...
Unpacking python3.9 (3.9.2-1) ...
Selecting previously unselected package libpython3-stdlib:amd64.
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Setting up python3-minimal (3.9.2-3) ...
Selecting previously unselected package python3.
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Selecting previously unselected package libaec0:amd64.
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Unpacking libaec0:amd64 (1.0.4-1) ...
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Preparing to unpack .../libsz2_1.0.4-1_amd64.deb ...
Unpacking libsz2:amd64 (1.0.4-1) ...
Selecting previously unselected package libhdf5-103-1:amd64.
Preparing to unpack .../libhdf5-103-1_1.10.6+repack-4+deb11u1_amd64.deb ...
Unpacking libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ...
Selecting previously unselected package python3-fast5.
Preparing to unpack .../python3-fast5_0.6.5-4+b4_amd64.deb ...
Unpacking python3-fast5 (0.6.5-4+b4) ...
Setting up media-types (4.0.0) ...
Setting up libsqlite3-0:amd64 (3.34.1-3) ...
Setting up libaec0:amd64 (1.0.4-1) ...
Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ...
Setting up libmpdec3:amd64 (2.5.1-1) ...
Setting up readline-common (8.1-1) ...
Setting up libsz2:amd64 (1.0.4-1) ...
Setting up libreadline8:amd64 (8.1-1) ...
Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ...
Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ...
Setting up libpython3-stdlib:amd64 (3.9.2-3) ...
Setting up python3.9 (3.9.2-1) ...
Setting up python3 (3.9.2-3) ...
Setting up python3-fast5 (0.6.5-4+b4) ...
Processing triggers for libc-bin (2.31-13+deb11u11) ...
0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5']
0m7.1s INFO: Running scripts post_install
0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
0m7.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
0m7.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
0m7.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpq7jyynrj to stable
0m7.6s DEBUG: sources.list:
deb http://deb.debian.org/debian/ bookworm main
0m7.6s INFO: Running scripts pre_distupgrade
0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_exceptions']
0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_exceptions']
0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', 'update']
0m10.3s DUMP:
Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB]
Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8792 kB]
Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB]
Fetched 15.1 MB in 2s (7420 kB/s)
Reading package lists...
0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', 'update']
0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-yf', 'dist-upgrade']
0m28.4s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
libmpdec3 libpython3.9-minimal libpython3.9-stdlib python3.9
python3.9-minimal
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
libsemanage1
The following NEW packages will be installed:
gcc-12-base libbrotli1 libcap2 libcurl4 libffi8 libfile-find-rule-perl
libgdbm-compat4 libgdbm6 libldap-2.5-0 libmd0 libnghttp2-14
libnumber-compare-perl libperl5.36 libpsl5 libpython3.11-minimal
libpython3.11-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsemanage2
libsepol2 libssh2-1 libssl3 libtext-glob-perl perl perl-modules-5.36
python3.11 python3.11-minimal usrmerge util-linux-extra
The following packages will be upgraded:
adduser apt base-files base-passwd bash bsdutils coreutils dash debconf
debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gpgv
grep gzip hostname init-system-helpers libacl1 libaec0 libapt-pkg6.0
libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc6
libcap-ng0 libcom-err2 libcrypt1 libdb5.3 libdebconfclient0 libexpat1
libext2fs2 libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgpg-error0
libgssapi-krb5-2 libhdf5-103-1 libhogweed6 libidn2-0 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1
libncursesw6 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin
libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpython3-stdlib libreadline8
libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2
libstdc++6 libsystemd0 libsz2 libtasn1-6 libtinfo6 libtirpc-common libtirpc3
libudev1 libunistring2 libuuid1 libxxhash0 libzstd1 login logsave lsb-base
mawk media-types mount ncurses-base ncurses-bin passwd perl-base python3
python3-fast5 python3-minimal readline-common sed sysvinit-utils tar tzdata
util-linux zlib1g
102 upgraded, 30 newly installed, 1 to remove and 0 not upgraded.
Need to get 51.8 MB of archives.
After this operation, 80.7 MB of additional disk space will be used.
Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u10 [70.9 kB]
Get:2 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u10 [2757 kB]
Get:3 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u10 [608 kB]
Get:4 http://deb.debian.org/debian bookworm/main amd64 gcc-12-base amd64 12.2.0-14 [37.5 kB]
Get:5 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 12.2.0-14 [49.9 kB]
Get:6 http://deb.debian.org/debian bookworm/main amd64 debianutils amd64 5.7-0.5~deb12u1 [103 kB]
Get:7 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.2.15-2+b7 [1490 kB]
Get:8 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-5+deb12u3 [94.4 kB]
Get:9 http://deb.debian.org/debian bookworm/main amd64 libgmp10 amd64 2:6.2.1+dfsg1-1.1 [563 kB]
Get:10 http://deb.debian.org/debian bookworm/main amd64 coreutils amd64 9.1-1 [2897 kB]
Get:11 http://deb.debian.org/debian bookworm/main amd64 liblzma5 amd64 5.4.1-0.2 [205 kB]
Get:12 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB]
Get:13 http://deb.debian.org/debian bookworm/main amd64 libzstd1 amd64 1.5.4+dfsg2-5 [290 kB]
Get:14 http://deb.debian.org/debian bookworm/main amd64 tar amd64 1.34+dfsg-1.2+deb12u1 [836 kB]
Get:15 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.22 [1567 kB]
Get:16 http://deb.debian.org/debian bookworm/main amd64 dash amd64 0.5.12-2 [91.8 kB]
Get:17 http://deb.debian.org/debian bookworm/main amd64 diffutils amd64 1:3.8-4 [352 kB]
Get:18 http://deb.debian.org/debian bookworm/main amd64 findutils amd64 4.9.0-4 [636 kB]
Get:19 http://deb.debian.org/debian bookworm/main amd64 grep amd64 3.8-5 [421 kB]
Get:20 http://deb.debian.org/debian bookworm/main amd64 gzip amd64 1.12-1 [140 kB]
Get:21 http://deb.debian.org/debian bookworm/main amd64 hostname amd64 3.23+nmu1 [10.5 kB]
Get:22 http://deb.debian.org/debian bookworm/main amd64 login amd64 1:4.13+dfsg1-1+b1 [616 kB]
Get:23 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB]
Get:24 http://deb.debian.org/debian bookworm/main amd64 libtinfo6 amd64 6.4-4 [331 kB]
Get:25 http://deb.debian.org/debian bookworm/main amd64 ncurses-bin amd64 6.4-4 [421 kB]
Get:26 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.36.0-7+deb12u1 [1608 kB]
Get:27 http://deb.debian.org/debian bookworm/main amd64 sed amd64 4.9-1 [329 kB]
Get:28 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-5+deb12u3 [147 kB]
Get:29 http://deb.debian.org/debian bookworm/main amd64 libpcre2-8-0 amd64 10.42-1 [261 kB]
Get:30 http://deb.debian.org/debian bookworm/main amd64 libselinux1 amd64 3.4-1+b6 [73.7 kB]
Get:31 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-5+deb12u3 [166 kB]
Get:32 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-5+deb12u3 [107 kB]
Get:33 http://deb.debian.org/debian bookworm/main amd64 libaudit-common all 1:3.0.9-1 [10.4 kB]
Get:34 http://deb.debian.org/debian bookworm/main amd64 libcap-ng0 amd64 0.8.3-1+b3 [17.1 kB]
Get:35 http://deb.debian.org/debian bookworm/main amd64 libaudit1 amd64 1:3.0.9-1 [46.8 kB]
Get:36 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-5+deb12u3 [111 kB]
Get:37 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-5+deb12u3 [1177 kB]
Get:38 http://deb.debian.org/debian bookworm/main amd64 libgpg-error0 amd64 1.46-1 [76.9 kB]
Get:39 http://deb.debian.org/debian bookworm/main amd64 libgcrypt20 amd64 1.10.1-3 [696 kB]
Get:40 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 12.2.0-14 [614 kB]
Get:41 http://deb.debian.org/debian bookworm/main amd64 libbz2-1.0 amd64 1.0.8-5+b1 [47.3 kB]
Get:42 http://deb.debian.org/debian bookworm/main amd64 liblz4-1 amd64 1.9.4-1 [62.9 kB]
Get:43 http://deb.debian.org/debian bookworm/main amd64 libcap2 amd64 1:2.66-4 [27.0 kB]
Get:44 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.36-1~deb12u1 [332 kB]
Get:45 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.36-1~deb12u1 [109 kB]
Get:46 http://deb.debian.org/debian bookworm/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB]
Get:47 http://deb.debian.org/debian bookworm/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB]
Get:48 http://deb.debian.org/debian bookworm/main amd64 libapt-pkg6.0 amd64 2.6.1 [907 kB]
Get:49 http://deb.debian.org/debian bookworm/main amd64 libnettle8 amd64 3.8.1-2 [288 kB]
Get:50 http://deb.debian.org/debian bookworm/main amd64 libhogweed6 amd64 3.8.1-2 [328 kB]
Get:51 http://deb.debian.org/debian bookworm/main amd64 libunistring2 amd64 1.0-2 [437 kB]
Get:52 http://deb.debian.org/debian bookworm/main amd64 libidn2-0 amd64 2.3.3-1+b1 [124 kB]
Get:53 http://deb.debian.org/debian bookworm/main amd64 libffi8 amd64 3.4.4-1 [22.9 kB]
Get:54 http://deb.debian.org/debian bookworm/main amd64 libp11-kit0 amd64 0.24.1-2 [345 kB]
Get:55 http://deb.debian.org/debian bookworm/main amd64 libtasn1-6 amd64 4.19.0-2+deb12u1 [48.6 kB]
Get:56 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u4 [1405 kB]
Get:57 http://deb.debian.org/debian bookworm/main amd64 libsemanage-common all 3.4-1 [21.6 kB]
Get:58 http://deb.debian.org/debian bookworm/main amd64 libsepol2 amd64 3.4-2.1 [276 kB]
Get:59 http://deb.debian.org/debian bookworm/main amd64 libsemanage2 amd64 3.4-1+b5 [89.9 kB]
Get:60 http://deb.debian.org/debian bookworm/main amd64 passwd amd64 1:4.13+dfsg1-1+b1 [972 kB]
Get:61 http://deb.debian.org/debian bookworm/main amd64 debconf all 1.5.82 [121 kB]
Get:62 http://deb.debian.org/debian bookworm/main amd64 libpam0g amd64 1.5.2-6+deb12u1 [92.0 kB]
Get:63 http://deb.debian.org/debian bookworm/main amd64 libcrypt1 amd64 1:4.4.33-2 [89.5 kB]
Get:64 http://deb.debian.org/debian bookworm/main amd64 libpam-modules-bin amd64 1.5.2-6+deb12u1 [75.6 kB]
Get:65 http://deb.debian.org/debian bookworm/main amd64 libpam-modules amd64 1.5.2-6+deb12u1 [291 kB]
Get:66 http://deb.debian.org/debian bookworm/main amd64 adduser all 3.134 [183 kB]
Get:67 http://deb.debian.org/debian bookworm/main amd64 gpgv amd64 2.2.40-1.1 [648 kB]
Get:68 http://deb.debian.org/debian bookworm/main amd64 debian-archive-keyring all 2023.3+deb12u1 [161 kB]
Get:69 http://deb.debian.org/debian bookworm/main amd64 libseccomp2 amd64 2.5.4-1+deb12u1 [46.8 kB]
Get:70 http://deb.debian.org/debian bookworm/main amd64 apt amd64 2.6.1 [1373 kB]
Get:71 http://deb.debian.org/debian bookworm/main amd64 libdebconfclient0 amd64 0.270 [9900 B]
Get:72 http://deb.debian.org/debian bookworm/main amd64 base-passwd amd64 3.6.1 [60.0 kB]
Get:73 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB]
Get:74 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB]
Get:75 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB]
Get:76 http://deb.debian.org/debian bookworm/main amd64 libdb5.3 amd64 5.3.28+dfsg2-1 [697 kB]
Get:77 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB]
Get:78 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB]
Get:79 http://deb.debian.org/debian bookworm/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:80 http://deb.debian.org/debian bookworm/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:81 http://deb.debian.org/debian bookworm/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB]
Get:82 http://deb.debian.org/debian bookworm/main amd64 usrmerge all 37~deb12u1 [13.3 kB]
Get:83 http://deb.debian.org/debian bookworm/main amd64 init-system-helpers all 1.65.2 [49.8 kB]
Get:84 http://deb.debian.org/debian bookworm/main amd64 ncurses-base all 6.4-4 [261 kB]
Get:85 http://deb.debian.org/debian bookworm/main amd64 sysvinit-utils amd64 3.06-4 [31.0 kB]
Get:86 http://deb.debian.org/debian bookworm/main amd64 lsb-base all 11.6 [4584 B]
Get:87 http://deb.debian.org/debian bookworm/main amd64 logsave amd64 1.47.0-2 [19.6 kB]
Get:88 http://deb.debian.org/debian bookworm/main amd64 libext2fs2 amd64 1.47.0-2 [205 kB]
Get:89 http://deb.debian.org/debian bookworm/main amd64 e2fsprogs amd64 1.47.0-2 [571 kB]
Get:90 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-5+deb12u3 [134 kB]
Get:91 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.15-1~deb12u1 [2025 kB]
Get:92 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u5 [816 kB]
Get:93 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1+deb12u1 [98.9 kB]
Get:94 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u5 [2067 kB]
Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-fast5 amd64 0.6.5-7+b3 [227 kB]
Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB]
Get:97 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB]
Get:98 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB]
Get:99 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB]
Get:100 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB]
Get:101 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB]
Get:102 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB]
Get:103 http://deb.debian.org/debian bookworm/main amd64 libcom-err2 amd64 1.47.0-2 [19.8 kB]
Get:104 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B]
Get:105 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB]
Get:106 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB]
Get:107 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB]
Get:108 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u2 [73.0 kB]
Get:109 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB]
Get:110 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get:111 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB]
Get:112 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u12 [391 kB]
Get:113 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB]
Get:114 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B]
Get:115 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB]
Get:116 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB]
Get:117 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB]
Get:118 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB]
Get:119 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2+deb12u1 [839 kB]
Get:120 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB]
Get:121 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB]
Get:122 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-5+deb12u3 [28.8 kB]
Get:123 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u5 [1797 kB]
Get:124 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u5 [573 kB]
Get:125 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B]
Get:126 http://deb.debian.org/debian bookworm/main amd64 libpam-runtime all 1.5.2-6+deb12u1 [161 kB]
Get:127 http://deb.debian.org/debian bookworm/main amd64 libacl1 amd64 2.3.1-3 [31.5 kB]
Get:128 http://deb.debian.org/debian bookworm/main amd64 libattr1 amd64 1:2.5.1-4 [22.2 kB]
Get:129 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB]
Get:130 http://deb.debian.org/debian bookworm/main amd64 mawk amd64 1.3.4.20200120-3.1 [119 kB]
Get:131 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2025a-0+deb12u1 [299 kB]
Get:132 http://deb.debian.org/debian bookworm/main amd64 libss2 amd64 1.47.0-2 [24.5 kB]
debconf: delaying package configuration, since apt-utils is not installed
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0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-yf', 'dist-upgrade']
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0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'show', '--no-all-versions', 'python3-fast5']
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Package: python3-fast5
Source: fast5 (0.6.5-7)
Version: 0.6.5-7+b3
Installed-Size: 778
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libhdf5-103-1, libstdc++6 (>= 11), python3 (<< 3.12), python3 (>= 3.11~)
Description-en: library for reading Oxford Nanopore Fast5 files -- Python 3
A lightweight C++11 library to read raw signal data from Oxford
Nanopore's FAST5 files.
.
This package provides the Python 3 library
Description-md5: 958ed5394333b52acc452eb50a652b9b
Multi-Arch: same
Homepage: https://github.com/mateidavid/fast5
Section: python
Priority: optional
Filename: pool/main/f/fast5/python3-fast5_0.6.5-7+b3_amd64.deb
Size: 226560
MD5sum: 2e49364c95fddae66aec25add2145170
SHA256: f4a34def462d3ae2d9813761cb112f5df5bb9cda4103dcd10a599db570c6704c
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'show', '--no-all-versions', 'python3-fast5']
0m29.5s INFO: apt-cache knows about the following packages: python3-fast5
0m29.5s INFO: Running scripts pre_install
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
0m29.6s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian bookworm/main amd64 Packages
release v=12.10,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
0m29.6s DUMP:
python3-fast5:
Installed: 0.6.5-7+b3
Candidate: 0.6.5-7+b3
Version table:
*** 0.6.5-7+b3 500
500 http://deb.debian.org/debian bookworm/main amd64 Packages
100 /var/lib/dpkg/status
0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5']
0m30.0s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
python3-fast5 is already the newest version (0.6.5-7+b3).
The following packages were automatically installed and are no longer required:
libmpdec3 libpython3.9-minimal libpython3.9-stdlib python3.9
python3.9-minimal
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5']
0m30.0s INFO: Running scripts post_install
0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
0m30.0s INFO: Running scripts post_distupgrade
0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_base_cleanup']
0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_base_cleanup']
0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_exceptions']
0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_exceptions']
0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_zz_backports']
0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_zz_backports']
0m30.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
0m30.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
0m30.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpq7jyynrj to testing
0m30.6s DEBUG: sources.list:
deb http://deb.debian.org/debian/ trixie main
0m30.6s INFO: Running scripts pre_distupgrade
0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_exceptions']
0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_exceptions']
0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', 'update']
0m33.7s DUMP:
Get:1 http://deb.debian.org/debian trixie InRelease [175 kB]
Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9578 kB]
Get:3 http://deb.debian.org/debian trixie/main Translation-en [6423 kB]
Fetched 16.2 MB in 2s (9362 kB/s)
Reading package lists...
0m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', 'update']
0m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-yf', 'dist-upgrade']
0m53.1s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
gcc-12-base libfile-find-rule-perl libhdf5-103-1 libldap-2.5-0 libmpdec3
libnumber-compare-perl libperl5.36 libpython3.11-minimal
libpython3.11-stdlib libpython3.9-minimal libpython3.9-stdlib
libtext-glob-perl perl-modules-5.36 python3.11 python3.11-minimal python3.9
python3.9-minimal usrmerge
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
libcurl4 libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libgnutls30
libhogweed6 libnettle8 libpsl5 libreadline8 libssh2-1 libssl3 libtirpc3
The following NEW packages will be installed:
gcc-14-base libapt-pkg7.0 libbsd0 libcurl4t64 libdb5.3t64 libext2fs2t64
libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhdf5-310 libhogweed6t64
libldap2 libnettle8t64 libnghttp3-9 libperl5.40 libpsl5t64
libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libssh2-1t64
libssl3t64 libtirpc3t64 libunistring5 login.defs netbase
openssl-provider-legacy perl-modules-5.40 python3.13 python3.13-minimal sqv
The following packages will be upgraded:
adduser apt base-files base-passwd bash bsdutils coreutils dash debconf
debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils
gcc-12-base gpgv grep gzip hostname init-system-helpers libacl1 libaec0
libattr1 libaudit-common libaudit1 libblkid1 libbrotli1 libbz2-1.0 libc-bin
libc6 libcap-ng0 libcap2 libcom-err2 libcrypt1 libdebconfclient0 libexpat1
libffi8 libgcc-s1 libgcrypt20 libgmp10 libgpg-error0 libgssapi-krb5-2
libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1
liblzma5 libmd0 libmount1 libncursesw6 libnghttp2-14 libnsl2 libp11-kit0
libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0
libpython3-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2
libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1
libsqlite3-0 libss2 libstdc++6 libsystemd0 libsz2 libtasn1-6 libtinfo6
libtirpc-common libudev1 libuuid1 libxxhash0 libzstd1 login logsave mawk
media-types mount ncurses-base ncurses-bin passwd perl perl-base python3
python3-fast5 python3-minimal readline-common sed sysvinit-utils tar tzdata
usrmerge util-linux util-linux-extra zlib1g
105 upgraded, 30 newly installed, 13 to remove and 0 not upgraded.
Need to get 55.2 MB of archives.
After this operation, 92.1 MB of additional disk space will be used.
Get:1 http://deb.debian.org/debian trixie/main amd64 base-files amd64 13.7 [73.0 kB]
Get:2 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.41-6 [2843 kB]
Get:3 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.41-6 [635 kB]
Get:4 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB]
Get:5 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB]
Get:6 http://deb.debian.org/debian trixie/main amd64 debianutils amd64 5.21 [92.1 kB]
Get:7 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.37-1.1+b1 [1500 kB]
Get:8 http://deb.debian.org/debian trixie/main amd64 libcap2 amd64 1:2.75-3 [27.8 kB]
Get:9 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.4-3 [451 kB]
Get:10 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.40.4-5 [106 kB]
Get:11 http://deb.debian.org/debian trixie/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB]
Get:12 http://deb.debian.org/debian trixie/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [304 kB]
Get:13 http://deb.debian.org/debian trixie/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Get:14 http://deb.debian.org/debian trixie/main amd64 libcap-ng0 amd64 0.8.5-4+b1 [17.6 kB]
Get:15 http://deb.debian.org/debian trixie/main amd64 libaudit1 amd64 1:4.0.2-2+b2 [55.1 kB]
Get:16 http://deb.debian.org/debian trixie/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB]
Get:17 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.1-2 [3017 kB]
Get:18 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB]
Get:19 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB]
Get:20 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB]
Get:21 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.1-2 [4315 kB]
Get:22 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.1-2 [267 kB]
Get:23 http://deb.debian.org/debian trixie/main amd64 perl-base amd64 5.40.1-2 [1665 kB]
Get:24 http://deb.debian.org/debian trixie/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB]
Get:25 http://deb.debian.org/debian trixie/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB]
Get:26 http://deb.debian.org/debian trixie/main amd64 debconf all 1.5.91 [121 kB]
Get:27 http://deb.debian.org/debian trixie/main amd64 libpam0g amd64 1.7.0-3 [69.7 kB]
Get:28 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB]
Get:29 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB]
Get:30 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get:31 http://deb.debian.org/debian trixie/main amd64 libpam-modules-bin amd64 1.7.0-3 [48.9 kB]
Get:32 http://deb.debian.org/debian trixie/main amd64 libpam-modules amd64 1.7.0-3 [177 kB]
Get:33 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get:34 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB]
Get:35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get:36 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get:37 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.13.0~rc2-2 [380 kB]
Get:38 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB]
Get:39 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:40 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:41 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:42 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
Get:43 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
Get:44 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
Get:45 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
Get:46 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB]
Get:47 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get:48 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get:49 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get:50 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB]
Get:51 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB]
Get:52 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get:53 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:54 http://deb.debian.org/debian trixie/main amd64 sqv amd64 1.2.1-6+b1 [623 kB]
Get:55 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB]
Get:56 http://deb.debian.org/debian trixie/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB]
Get:57 http://deb.debian.org/debian trixie/main amd64 liblz4-1 amd64 1.10.0-4 [63.9 kB]
Get:58 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.6.4-1 [280 kB]
Get:59 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.4-3 [149 kB]
Get:60 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.4.1-1 [302 kB]
Get:61 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.4.1-1 [2304 kB]
Get:62 http://deb.debian.org/debian trixie/main amd64 libapt-pkg7.0 amd64 2.9.34 [1111 kB]
Get:63 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.277 [10.4 kB]
Get:64 http://deb.debian.org/debian trixie/main amd64 base-passwd amd64 3.6.6 [53.1 kB]
Get:65 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.3-2 [186 kB]
Get:66 http://deb.debian.org/debian trixie/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB]
Get:67 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-2 [131 kB]
Get:68 http://deb.debian.org/debian trixie/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB]
Get:69 http://deb.debian.org/debian trixie/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB]
Get:70 http://deb.debian.org/debian trixie/main amd64 libsemanage-common all 3.8.1-1 [7812 B]
Get:71 http://deb.debian.org/debian trixie/main amd64 libsepol2 amd64 3.8.1-1 [296 kB]
Get:72 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB]
Get:73 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.3-2 [1228 kB]
Get:74 http://deb.debian.org/debian trixie/main amd64 adduser all 3.149 [187 kB]
Get:75 http://deb.debian.org/debian trixie/main amd64 debian-archive-keyring all 2023.4 [161 kB]
Get:76 http://deb.debian.org/debian trixie/main amd64 libseccomp2 amd64 2.6.0-2 [51.7 kB]
Get:77 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.34 [1449 kB]
Get:78 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get:79 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:80 http://deb.debian.org/debian trixie/main amd64 usrmerge all 39+nmu2 [13.3 kB]
Get:81 http://deb.debian.org/debian trixie/main amd64 coreutils amd64 9.5-1+b1 [2922 kB]
Get:82 http://deb.debian.org/debian trixie/main amd64 dash amd64 0.5.12-12 [98.5 kB]
Get:83 http://deb.debian.org/debian trixie/main amd64 diffutils amd64 1:3.10-3 [385 kB]
Get:84 http://deb.debian.org/debian trixie/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB]
Get:85 http://deb.debian.org/debian trixie/main amd64 dpkg amd64 1.22.18 [1545 kB]
Get:86 http://deb.debian.org/debian trixie/main amd64 findutils amd64 4.10.0-3 [700 kB]
Get:87 http://deb.debian.org/debian trixie/main amd64 grep amd64 3.11-4 [431 kB]
Get:88 http://deb.debian.org/debian trixie/main amd64 gzip amd64 1.13-1 [138 kB]
Get:89 http://deb.debian.org/debian trixie/main amd64 hostname amd64 3.25 [11.0 kB]
Get:90 http://deb.debian.org/debian trixie/main amd64 libpam-runtime all 1.7.0-3 [248 kB]
Get:91 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.40.4-5 [88.7 kB]
Get:92 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB]
Get:93 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5+20250216-2 [348 kB]
Get:94 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5+20250216-2 [438 kB]
Get:95 http://deb.debian.org/debian trixie/main amd64 sed amd64 4.9-2 [329 kB]
Get:96 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.40.4-5 [169 kB]
Get:97 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.40.4-5 [200 kB]
Get:98 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.40.4-5 [140 kB]
Get:99 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.40.4-5 [36.5 kB]
Get:100 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.40.4-5 [1205 kB]
Get:101 http://deb.debian.org/debian trixie/main amd64 util-linux-extra amd64 2.40.4-5 [276 kB]
Get:102 http://deb.debian.org/debian trixie/main amd64 init-system-helpers all 1.68 [38.7 kB]
Get:103 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5+20250216-2 [273 kB]
Get:104 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.14-4 [34.1 kB]
Get:105 http://deb.debian.org/debian trixie/main amd64 logsave amd64 1.47.2-1+b1 [24.2 kB]
Get:106 http://deb.debian.org/debian trixie/main amd64 libext2fs2t64 amd64 1.47.2-1+b1 [212 kB]
Get:107 http://deb.debian.org/debian trixie/main amd64 e2fsprogs amd64 1.47.2-1+b1 [590 kB]
Get:108 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:109 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:110 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB]
Get:111 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB]
Get:112 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB]
Get:113 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.40.4-5 [156 kB]
Get:114 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB]
Get:115 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get:116 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB]
Get:117 http://deb.debian.org/debian trixie/main amd64 python3-fast5 amd64 0.6.5-9+b2 [255 kB]
Get:118 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB]
Get:119 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-2 [28.1 kB]
Get:120 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB]
Get:121 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B]
Get:122 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB]
Get:123 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB]
Get:124 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB]
Get:125 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-1 [259 kB]
Get:126 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB]
Get:127 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB]
Get:128 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-2 [746 kB]
Get:129 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB]
Get:130 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB]
Get:131 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB]
Get:132 http://deb.debian.org/debian trixie/main amd64 gpgv amd64 2.2.46-5 [221 kB]
Get:133 http://deb.debian.org/debian trixie/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB]
Get:134 http://deb.debian.org/debian trixie/main amd64 gcc-12-base amd64 12.4.0-5 [43.9 kB]
Get:135 http://deb.debian.org/debian trixie/main amd64 libss2 amd64 1.47.2-1+b1 [29.0 kB]
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dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested:
libsasl2-modules-db:amd64 depends on libdb5.3.
libpython3.9-stdlib:amd64 depends on libdb5.3.
libpython3.11-stdlib:amd64 depends on libdb5.3.
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dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested:
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librtmp1:amd64 depends on libgnutls30 (>= 3.6.14).
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apt depends on libgnutls30 (>= 3.7.5).
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dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested:
libpython3.11-minimal:amd64 depends on libssl3 (>= 3.0.0).
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Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra'
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Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.11.2-1+b1) ...
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Setting up libkeyutils1:amd64 (1.6.3-4) ...
Setting up libtirpc-common (1.3.6+ds-1) ...
Setting up libbrotli1:amd64 (1.1.0-2+b7) ...
Setting up libsqlite3-0:amd64 (3.46.1-2) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libnghttp2-14:amd64 (1.64.0-1) ...
Setting up libaec0:amd64 (1.1.3-1+b1) ...
Setting up libkrb5support0:amd64 (1.21.3-5) ...
Setting up gcc-12-base:amd64 (12.4.0-5) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Setting up tzdata (2025b-1) ...
Current default time zone: 'Etc/UTC'
Local time is now: Wed Mar 26 17:44:52 UTC 2025.
Universal Time is now: Wed Mar 26 17:44:52 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libss2:amd64 (1.47.2-1+b1) ...
Setting up libncursesw6:amd64 (6.5+20250216-2) ...
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Setting up mount (2.40.4-5) ...
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Setting up mawk (1.3.4.20250131-1) ...
Setting up libkrb5-3:amd64 (1.21.3-5) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up readline-common (8.2-6) ...
Setting up libldap2:amd64 (2.6.9+dfsg-2) ...
Setting up libsz2:amd64 (1.1.3-1+b1) ...
Setting up e2fsprogs (1.47.2-1+b1) ...
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Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
Setting up libcurl4t64:amd64 (8.13.0~rc2-2) ...
Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ...
Setting up python3.13 (3.13.2-2) ...
Setting up python3 (3.13.2-2) ...
Setting up libhdf5-310:amd64 (1.14.5+repack-3) ...
Setting up libnsl2:amd64 (1.3.0-3+b3) ...
Setting up python3-fast5:amd64 (0.6.5-9+b2) ...
Processing triggers for debianutils (5.21) ...
Processing triggers for libc-bin (2.41-6) ...
0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-yf', 'dist-upgrade']
0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m54.2s DUMP:
e4ea0f3ae80d22f6bbb16858a4dbf445 -
0m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'show', '--no-all-versions', 'python3-fast5']
0m54.5s DUMP:
Package: python3-fast5
Source: fast5 (0.6.5-9)
Version: 0.6.5-9+b2
Installed-Size: 900
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libhdf5-310 (>= 1.14.3), libstdc++6 (>= 14), python3 (<< 3.14), python3 (>= 3.13~)
Description-en: library for reading Oxford Nanopore Fast5 files -- Python 3
A lightweight C++11 library to read raw signal data from Oxford
Nanopore's FAST5 files.
.
This package provides the Python 3 library
Description-md5: 958ed5394333b52acc452eb50a652b9b
Multi-Arch: same
Homepage: https://github.com/mateidavid/fast5
Section: python
Priority: optional
Filename: pool/main/f/fast5/python3-fast5_0.6.5-9+b2_amd64.deb
Size: 254796
MD5sum: cb4b7ad7b6062a41f165fa64d81a8ea2
SHA256: 90850c1690e7bc8d36643682bc4c26f578d91f22ec8b7b43aecd7b07fdd18a2b
0m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'show', '--no-all-versions', 'python3-fast5']
0m54.5s INFO: apt-cache knows about the following packages: python3-fast5
0m54.5s INFO: Running scripts pre_install
0m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
0m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
0m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
0m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
0m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
0m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
0m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
0m54.6s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian trixie/main amd64 Packages
release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
0m54.7s DUMP:
python3-fast5:
Installed: 0.6.5-9+b2
Candidate: 0.6.5-9+b2
Version table:
*** 0.6.5-9+b2 500
500 http://deb.debian.org/debian trixie/main amd64 Packages
100 /var/lib/dpkg/status
0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5']
0m55.2s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
python3-fast5 is already the newest version (0.6.5-9+b2).
The following packages were automatically installed and are no longer required:
gcc-12-base libfile-find-rule-perl libhdf5-103-1 libldap-2.5-0 libmpdec3
libnumber-compare-perl libperl5.36 libpython3.11-minimal
libpython3.11-stdlib libpython3.9-minimal libpython3.9-stdlib
libtext-glob-perl perl-modules-5.36 python3.11 python3.11-minimal python3.9
python3.9-minimal usrmerge
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5']
0m55.2s INFO: Running scripts post_install
0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
0m55.2s INFO: Running scripts post_distupgrade
0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_base_cleanup']
0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_base_cleanup']
0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_exceptions']
0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_exceptions']
0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m55.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m55.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m55.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m55.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_zz_backports']
0m55.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_zz_backports']
0m55.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
0m55.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
0m56.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpq7jyynrj to sid
0m56.0s DEBUG: sources.list:
deb http://deb.debian.org/debian/ sid main
0m56.0s INFO: Running scripts pre_distupgrade
0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_exceptions']
0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_exceptions']
0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', 'update']
0m59.0s DUMP:
Get:1 http://deb.debian.org/debian sid InRelease [205 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB]
Get:3 http://deb.debian.org/debian sid/main Translation-en [7386 kB]
Fetched 17.7 MB in 2s (8198 kB/s)
Reading package lists...
0m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', 'update']
0m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-yf', 'dist-upgrade']
1m0.5s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
gcc-12-base libfile-find-rule-perl libhdf5-103-1 libldap-2.5-0 libmpdec3
libnumber-compare-perl libperl5.36 libpython3.11-minimal
libpython3.11-stdlib libpython3.9-minimal libpython3.9-stdlib
libtext-glob-perl perl-modules-5.36 python3.11 python3.11-minimal python3.9
python3.9-minimal usrmerge
Use 'sudo apt autoremove' to remove them.
The following packages will be upgraded:
base-passwd gpgv libcap2 libexpat1 libgpg-error0 libldap-2.5-0 libunistring5
7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 1156 kB of archives.
After this operation, 26.6 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.7 [53.7 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.75-4 [27.9 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.46-6 [221 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.0-1 [107 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Preconfiguring packages ...
Fetched 1156 kB in 0s (20.3 MB/s)
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(Reading database ... 11899 files and directories currently installed.)
Preparing to unpack .../base-passwd_3.6.7_amd64.deb ...
Unpacking base-passwd (3.6.7) over (3.6.6) ...
Setting up base-passwd (3.6.7) ...
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Preparing to unpack .../libcap2_1%3a2.75-4_amd64.deb ...
Unpacking libcap2:amd64 (1:2.75-4) over (1:2.75-3) ...
Setting up libcap2:amd64 (1:2.75-4) ...
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Preparing to unpack .../libgpg-error0_1.51-4_amd64.deb ...
Unpacking libgpg-error0:amd64 (1.51-4) over (1.51-3) ...
Preparing to unpack .../gpgv_2.2.46-6_amd64.deb ...
Unpacking gpgv (2.2.46-6) over (2.2.46-5) ...
Preparing to unpack .../libexpat1_2.7.0-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.7.0-1) over (2.6.4-1) ...
Preparing to unpack .../libldap-2.5-0_2.5.19+dfsg-1_amd64.deb ...
Unpacking libldap-2.5-0:amd64 (2.5.19+dfsg-1) over (2.5.13+dfsg-5) ...
Preparing to unpack .../libunistring5_1.3-2_amd64.deb ...
Unpacking libunistring5:amd64 (1.3-2) over (1.3-1) ...
Setting up libexpat1:amd64 (2.7.0-1) ...
Setting up libgpg-error0:amd64 (1.51-4) ...
Setting up libldap-2.5-0:amd64 (2.5.19+dfsg-1) ...
Setting up libunistring5:amd64 (1.3-2) ...
Setting up gpgv (2.2.46-6) ...
Processing triggers for libc-bin (2.41-6) ...
1m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-yf', 'dist-upgrade']
1m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'sh', '-c', 'apt-cache dumpavail | md5sum']
1m0.9s DUMP:
6d87337786b1fd9470f819e8990389ec -
1m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'sh', '-c', 'apt-cache dumpavail | md5sum']
1m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'show', '--no-all-versions', 'python3-fast5']
1m1.3s DUMP:
Package: python3-fast5
Source: fast5 (0.6.5-9)
Version: 0.6.5-9+b2
Installed-Size: 900
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libhdf5-310 (>= 1.14.3), libstdc++6 (>= 14), python3 (<< 3.14), python3 (>= 3.13~)
Description-en: library for reading Oxford Nanopore Fast5 files -- Python 3
A lightweight C++11 library to read raw signal data from Oxford
Nanopore's FAST5 files.
.
This package provides the Python 3 library
Description-md5: 958ed5394333b52acc452eb50a652b9b
Multi-Arch: same
Homepage: https://github.com/mateidavid/fast5
Section: python
Priority: optional
Filename: pool/main/f/fast5/python3-fast5_0.6.5-9+b2_amd64.deb
Size: 254796
MD5sum: cb4b7ad7b6062a41f165fa64d81a8ea2
SHA256: 90850c1690e7bc8d36643682bc4c26f578d91f22ec8b7b43aecd7b07fdd18a2b
1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'show', '--no-all-versions', 'python3-fast5']
1m1.3s INFO: apt-cache knows about the following packages: python3-fast5
1m1.3s INFO: Running scripts pre_install
1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
1m1.4s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
1m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
1m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
1m1.5s DUMP:
python3-fast5:
Installed: 0.6.5-9+b2
Candidate: 0.6.5-9+b2
Version table:
*** 0.6.5-9+b2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
100 /var/lib/dpkg/status
1m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
1m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5']
1m2.0s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
python3-fast5 is already the newest version (0.6.5-9+b2).
The following packages were automatically installed and are no longer required:
gcc-12-base libfile-find-rule-perl libhdf5-103-1 libldap-2.5-0 libmpdec3
libnumber-compare-perl libperl5.36 libpython3.11-minimal
libpython3.11-stdlib libpython3.9-minimal libpython3.9-stdlib
libtext-glob-perl perl-modules-5.36 python3.11 python3.11-minimal python3.9
python3.9-minimal usrmerge
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5']
1m2.0s INFO: Running scripts post_install
1m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
1m2.1s INFO: Running scripts post_distupgrade
1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_base_cleanup']
1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_base_cleanup']
1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_exceptions']
1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_exceptions']
1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_force-unsafe-io']
1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_force-unsafe-io']
1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_squeeze-backports']
1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_squeeze-backports']
1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_zz_backports']
1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_distupgrade_zz_backports']
1m2.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
1m3.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
1m3.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
1m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
1m4.1s INFO: Running scripts pre_install
1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_database-server']
1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_exceptions']
1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_extras']
1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture']
1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_install_foreign_architecture_i386']
1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
1m4.1s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy']
1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
1m4.2s DUMP:
python3-fast5:
Installed: 0.6.5-9+b2
Candidate: 0.6.5-9+b2
Version table:
*** 0.6.5-9+b2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
100 /var/lib/dpkg/status
1m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-cache', 'policy', 'python3-fast5']
1m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5=0.6.5-9+b2']
1m4.9s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
python3-fast5 is already the newest version (0.6.5-9+b2).
The following packages were automatically installed and are no longer required:
gcc-12-base libfile-find-rule-perl libhdf5-103-1 libldap-2.5-0 libmpdec3
libnumber-compare-perl libperl5.36 libpython3.11-minimal
libpython3.11-stdlib libpython3.9-minimal libpython3.9-stdlib
libtext-glob-perl perl-modules-5.36 python3.11 python3.11-minimal python3.9
python3.9-minimal usrmerge
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', 'install', 'python3-fast5=0.6.5-9+b2']
1m4.9s INFO: Running scripts post_install
1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/post_install_exceptions']
1m4.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
1m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
1m5.8s INFO: /lib converted to /usr/lib by /usr merge
1m5.9s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge
1m6.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', '-ac', '--ignore-obsolete']
1m8.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', '-ac', '--ignore-obsolete']
1m8.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
1m8.4s DUMP:
0.15.6
1m8.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
1m8.4s INFO: Running adequate version 0.15.6 now.
1m8.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'python3-fast5']
1m8.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'python3-fast5']
1m8.5s INFO: Running scripts pre_remove
1m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
1m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
1m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
1m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
1m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
1m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
1m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_50_find_bad_permissions']
1m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_50_find_bad_permissions']
1m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_50_find_missing_copyright']
1m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_50_find_missing_copyright']
1m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_exceptions']
1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'tmp/scripts/pre_remove_exceptions']
1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
1m10.4s DUMP:
install ok installed adduser adduser 3.149
install ok installed apt apt 2.9.34
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.7
install ok installed bash bash 5.2.37-1.1+b1
install ok installed bsdutils bsdutils 1:2.40.4-5
install ok installed coreutils coreutils 9.5-1+b1
install ok installed dash dash 0.5.12-12
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-3
install ok installed dpkg dpkg 1.22.18
install ok installed e2fsprogs e2fsprogs 1.47.2-1+b1
install ok installed findutils findutils 4.10.0-3
install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6
install ok installed gcc-12-base:amd64 gcc-12-base 12.4.0-5
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19
install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22
install ok installed gpgv gpgv 2.2.46-6
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libaec0:amd64 libaec0 1.1.3-1+b1
install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.34
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblkid1:amd64 libblkid1 2.40.4-5
install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-6
install ok installed libc6:amd64 libc6 2.41-6
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-4
install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libcurl4t64:amd64 libcurl4t64 8.13.0~rc2-2
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277
install ok installed libexpat1:amd64 libexpat1 2.7.0-1
install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1+b1
install ok installed libffi7:amd64 libffi7 3.3-6
install ok installed libffi8:amd64 libffi8 3.4.7-1
install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19
install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-7
install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2
install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2
install ok installed libgpg-error0:amd64 libgpg-error0 1.51-4
install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5
install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.8+repack1-1
install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2
install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5
install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4
install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5
install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5
install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.19+dfsg-1
install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.6.4-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.40.4-5
install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1
install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1
install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1
install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3
install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3
install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libpcre3:amd64 libpcre3 2:8.39-15
install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1
install ok installed libperl5.40:amd64 libperl5.40 5.40.1-2
install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1
install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.2-2
install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u5
install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u5
install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.2-2
install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.2-2
install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1
install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1
install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6
install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5
install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9
install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9
install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2
install ok installed libselinux1:amd64 libselinux1 3.8.1-1
install ok installed libsemanage-common libsemanage-common 3.8.1-1
install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1
install ok installed libsepol1:amd64 libsepol1 3.1-1
install ok installed libsepol2:amd64 libsepol2 3.8.1-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2
install ok installed libss2:amd64 libss2 1.47.2-1+b1
install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1
install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1
install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19
install ok installed libsystemd0:amd64 libsystemd0 257.4-3
install ok installed libsz2:amd64 libsz2 1.1.3-1+b1
install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2
install ok installed libtext-glob-perl libtext-glob-perl 0.11-3
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1
install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1
install ok installed libudev1:amd64 libudev1 257.4-3
install ok installed libunistring2:amd64 libunistring2 1.0-2
install ok installed libunistring5:amd64 libunistring5 1.3-2
install ok installed libuuid1:amd64 libuuid1 2.40.4-5
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1
install ok installed login login 1:4.16.0-2+really2.40.4-5
install ok installed login.defs login.defs 1:4.17.3-2
install ok installed logsave logsave 1.47.2-1+b1
install ok installed lsb-base lsb-base 11.6
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed media-types media-types 13.0.0
install ok installed mount mount 2.40.4-5
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed netbase netbase 6.5
install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1
install ok installed passwd passwd 1:4.17.3-2
install ok installed perl perl 5.40.1-2
install ok installed perl-base perl-base 5.40.1-2
install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1
install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-2
install ok installed python3 python3 3.13.2-2
install ok installed python3-fast5:amd64 python3-fast5 0.6.5-9+b2
install ok installed python3-minimal python3-minimal 3.13.2-2
install ok installed python3.11 python3.11 3.11.2-6+deb12u5
install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u5
install ok installed python3.13 python3.13 3.13.2-2
install ok installed python3.13-minimal python3.13-minimal 3.13.2-2
install ok installed python3.9 python3.9 3.9.2-1
install ok installed python3.9-minimal python3.9-minimal 3.9.2-1
install ok installed readline-common readline-common 8.2-6
install ok installed sed sed 4.9-2
install ok installed sqv sqv 1.2.1-6+b1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025b-1
install ok installed usrmerge usrmerge 39+nmu2
install ok installed util-linux util-linux 2.40.4-5
install ok installed util-linux-extra util-linux-extra 2.40.4-5
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libgnutls30:amd64=3.7.9-2+deb12u4', 'libaec0:amd64-', 'libbrotli1:amd64-', 'libcurl4t64:amd64-', 'libexpat1:amd64-', 'libgnutls30t64:amd64-', 'libhdf5-103-1:amd64-', 'libhdf5-310:amd64-', 'libldap-2.5-0:amd64-', 'libldap2:amd64-', 'libmpdec3:amd64-', 'libncursesw6:amd64-', 'libnghttp2-14:amd64-', 'libnghttp3-9:amd64-', 'libpsl5t64:amd64-', 'libpython3-stdlib:amd64-', 'libpython3.11-minimal:amd64-', 'libpython3.11-stdlib:amd64-', 'libpython3.13-minimal:amd64-', 'libpython3.13-stdlib:amd64-', 'libpython3.9-minimal:amd64-', 'libpython3.9-stdlib:amd64-', 'libreadline8t64:amd64-', 'librtmp1:amd64-', 'libsasl2-2:amd64-', 'libsasl2-modules-db:amd64-', 'libsqlite3-0:amd64-', 'libssh2-1t64:amd64-', 'libsz2:amd64-', 'media-types-', 'netbase-', 'python3-', 'python3-fast5:amd64-', 'python3-minimal-', 'python3.11-', 'python3.11-minimal-', 'python3.13-', 'python3.13-minimal-', 'python3.9-', 'python3.9-minimal-', 'readline-common-']
1m10.7s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Package libgnutls30 is a virtual package provided by:
libgnutls30t64 3.8.9-2 (= 3.8.9-2)
W: --force-yes is deprecated, use one of the options starting with --allow instead.
E: Version '3.7.9-2+deb12u4' for 'libgnutls30' was not found
1m10.7s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libgnutls30:amd64=3.7.9-2+deb12u4', 'libaec0:amd64-', 'libbrotli1:amd64-', 'libcurl4t64:amd64-', 'libexpat1:amd64-', 'libgnutls30t64:amd64-', 'libhdf5-103-1:amd64-', 'libhdf5-310:amd64-', 'libldap-2.5-0:amd64-', 'libldap2:amd64-', 'libmpdec3:amd64-', 'libncursesw6:amd64-', 'libnghttp2-14:amd64-', 'libnghttp3-9:amd64-', 'libpsl5t64:amd64-', 'libpython3-stdlib:amd64-', 'libpython3.11-minimal:amd64-', 'libpython3.11-stdlib:amd64-', 'libpython3.13-minimal:amd64-', 'libpython3.13-stdlib:amd64-', 'libpython3.9-minimal:amd64-', 'libpython3.9-stdlib:amd64-', 'libreadline8t64:amd64-', 'librtmp1:amd64-', 'libsasl2-2:amd64-', 'libsasl2-modules-db:amd64-', 'libsqlite3-0:amd64-', 'libssh2-1t64:amd64-', 'libsz2:amd64-', 'media-types-', 'netbase-', 'python3-', 'python3-fast5:amd64-', 'python3-minimal-', 'python3.11-', 'python3.11-minimal-', 'python3.13-', 'python3.13-minimal-', 'python3.9-', 'python3.9-minimal-', 'readline-common-']
Reading package lists...
Building dependency tree...
Reading state information...
Package libgnutls30 is a virtual package provided by:
libgnutls30t64 3.8.9-2 (= 3.8.9-2)
W: --force-yes is deprecated, use one of the options starting with --allow instead.
E: Version '3.7.9-2+deb12u4' for 'libgnutls30' was not found
1m11.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/shm']
1m11.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/shm']
1m11.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/console']
1m11.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/console']
1m11.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/ptmx']
1m11.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/ptmx']
1m11.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/pts']
1m11.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/dev/pts']
1m11.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/proc']
1m11.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj/proc']
1m11.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
1m11.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpq7jyynrj']
1m11.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpq7jyynrj
1m11.8s ERROR: piuparts run ends.
ret=1
End: 2025-03-26 17:45:12 GMT