Start: 2026-02-28 00:06:03 GMT [oldstable] Package: busco Version: 5.4.4-1 Installed-Size: 410 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, python3-pandas, python3-biopython, hmmer, prodigal, bbmap Description: benchmarking sets of universal single-copy orthologs Homepage: https://gitlab.com/ezlab/busco Description-md5: 40a9b5e0784ce3cc899761f6a14504c5 Section: science Priority: optional Filename: pool/main/b/busco/busco_5.4.4-1_amd64.deb Size: 71788 MD5sum: 50c8e27a0d3a3df3da74214c5791c8b7 SHA256: 98891e95d5baf338c3c14ac530f765c064634118e24d2c89b2c84aad3fe2a536 [stable] Package: busco Version: 5.5.0-3 Installed-Size: 1236 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, python3-pandas, python3-biopython, hmmer, prodigal, bbmap Description: benchmarking sets of universal single-copy orthologs Homepage: https://gitlab.com/ezlab/busco Description-md5: 40a9b5e0784ce3cc899761f6a14504c5 Section: science Priority: optional Filename: pool/main/b/busco/busco_5.5.0-3_amd64.deb Size: 292828 MD5sum: 73ef7fcb3f81c679deab1c5a6fa45500 SHA256: d8ad9570367965899e264e3179783965bea50571ec803cef4f29ac93779e1acd [testing] Package: busco Version: 5.5.0-3 Installed-Size: 1236 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, python3-pandas, python3-biopython, hmmer, prodigal, bbmap Description: benchmarking sets of universal single-copy orthologs Homepage: https://gitlab.com/ezlab/busco Description-md5: 40a9b5e0784ce3cc899761f6a14504c5 Section: science Priority: optional Filename: pool/main/b/busco/busco_5.5.0-3_amd64.deb Size: 292828 MD5sum: 73ef7fcb3f81c679deab1c5a6fa45500 SHA256: d8ad9570367965899e264e3179783965bea50571ec803cef4f29ac93779e1acd [sid] Package: busco Version: 5.5.0-4 Installed-Size: 1235 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: bbmap, hmmer, prodigal, python3-biopython, python3-pandas, python3:any Description: benchmarking sets of universal single-copy orthologs Homepage: https://gitlab.com/ezlab/busco Description-md5: 40a9b5e0784ce3cc899761f6a14504c5 Section: science Priority: optional Filename: pool/main/b/busco/busco_5.5.0-4_amd64.deb Size: 292124 MD5sum: 366ff9c1c98fdd416c55af6e8328c97b SHA256: fa4fb3e673f886c3217c6504a1aeee593e157b23aea82436c0c5b2c88338f43b Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt busco=5.5.0-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt busco=5.5.0-4 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-43-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.162-1 (2026-02-08) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpsevuwvcl 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpsevuwvcl 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpsevuwvcl/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'update'] 0m1.4s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'update'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s DUMP: f20cadd64d37e49fd01aa09e0b0b15af - 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s INFO: Running scripts post_setup 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_forbid_home'] 0m3.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_forbid_home'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_minimize'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_minimize'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u13 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b10 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u2 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14+deb12u1 install ok installed gpgv gpgv 2.2.40-1.1+deb12u2 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2+deb12u1 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u13 install ok installed libc6:amd64 libc6 2.36-9+deb12u13 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4+deb12u2+b2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14+deb12u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u3 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u2 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u2 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u3 install ok installed libss2:amd64 libss2 1.47.0-2+b2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14+deb12u1 install ok installed libsystemd0:amd64 libsystemd0 252.39-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.39-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+deb12u2 install ok installed logsave logsave 1.47.0-2+b2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u3 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+deb12u2 install ok installed perl-base perl-base 5.36.0-7+deb12u3 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2025b-0+deb12u2 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u3 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u3 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat 0m3.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 0m3.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 0m3.9s INFO: Running scripts is_testable 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/is_testable_uninstallable'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/is_testable_uninstallable'] 0m3.9s INFO: Running scripts pre_test 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_test_exceptions'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_test_exceptions'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_test_root_password'] 0m4.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_test_root_password'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'show', '--no-all-versions', 'busco'] 0m4.1s DUMP: Package: busco Version: 5.4.4-1 Installed-Size: 410 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, python3-pandas, python3-biopython, hmmer, prodigal, bbmap Description-en: benchmarking sets of universal single-copy orthologs Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO). . * Automated selection of lineages issued from https://www.orthodb.org/ * Automated download of all necessary files and datasets to conduct a run * Use prodigal for non-eukaryotic genomes Description-md5: 40a9b5e0784ce3cc899761f6a14504c5 Homepage: https://gitlab.com/ezlab/busco Section: science Priority: optional Filename: pool/main/b/busco/busco_5.4.4-1_amd64.deb Size: 71788 MD5sum: 50c8e27a0d3a3df3da74214c5791c8b7 SHA256: 98891e95d5baf338c3c14ac530f765c064634118e24d2c89b2c84aad3fe2a536 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'show', '--no-all-versions', 'busco'] 0m4.1s INFO: apt-cache knows about the following packages: busco 0m4.1s INFO: Running scripts pre_install 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 0m4.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.13,o=Debian,a=oldstable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 0m4.2s DUMP: busco: Installed: (none) Candidate: 5.4.4-1 Version table: 5.4.4-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco'] 1m13.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: bbmap ca-certificates ca-certificates-java fontconfig-config fonts-urw-base35 hmmer java-common libapache-pom-java libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libbsd0 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdbus-1-3 libdeflate0 libdivsufsort3 libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 liblog4j1.2-java libmpj-java libncursesw6 libnsl2 libnspr4 libnss3 libopenjp2-7 libpcsclite1 libperl5.36 libpng16-16 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libtiff6 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support openjdk-17-jre-headless openssl perl perl-modules-5.36 prodigal python3 python3-biopython python3-dateutil python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-tz python3.11 python3.11-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre hmmer-doc default-jre libasound2-plugins alsa-utils libcommons-io-java-doc cups-common gdbm-l10n low-memory-monitor krb5-doc krb5-user liblcms2-utils liblog4j1.2-java-doc libmail-java pcscd sensible-utils libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise gcc gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pil-doc python3-setuptools pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3.11-venv python3.11-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: pigz alsa-ucm-conf alsa-topology-conf dbus libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 bzip2 file xz-utils netbase python-biopython-doc ncbi-blast+ python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-olefile The following NEW packages will be installed: bbmap busco ca-certificates ca-certificates-java fontconfig-config fonts-urw-base35 hmmer java-common libapache-pom-java libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libbsd0 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdbus-1-3 libdeflate0 libdivsufsort3 libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 liblog4j1.2-java libmpj-java libncursesw6 libnsl2 libnspr4 libnss3 libopenjp2-7 libpcsclite1 libperl5.36 libpng16-16 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libtiff6 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support openjdk-17-jre-headless openssl perl perl-modules-5.36 prodigal python3 python3-biopython python3-dateutil python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-tz python3.11 python3.11-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After this operation, 450 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u3 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u3 [4196 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u3 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.18-1~deb12u1 [2029 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u6 [817 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1+deb12u2 [99.9 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u6 [2064 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u4 [33.2 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u4 [79.8 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:18 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u4 [334 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u4 [135 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2+deb12u2 [839 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u6 [1798 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u6 [573 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:29 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.18-1~deb12u1 [1432 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311+deb12u1 [155 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libcommons-cli-java all 1.5.0-1 [60.0 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get:35 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libcommons-codec-java all 1.15-1 [292 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libcommons-io-java all 2.11.0-2 [319 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libmpj-java all 0.44+dfsg-4 [447 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20230710~deb12u1 [11.9 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.74 [6388 B] Get:42 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10+deb12u1 [107 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10+deb12u1 [42.1 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10+deb12u1 [45.8 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3+deb12u9 [245 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2+deb12u1 [276 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u4 [398 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:55 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1+deb12u1 [1331 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1+b1 [362 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u8 [1402 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-2 [49.7 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.17+10-1~deb12u1 [43.9 MB] Get:68 http://deb.debian.org/debian bookworm/main amd64 bbmap all 39.01+dfsg-2 [8740 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1+deb12u2 [297 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14+deb12u1 [145 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14+deb12u1 [793 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1+deb12u1 [4960 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+deb12u1 [79.0 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+deb12u1 [38.5 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14+deb12u1 [116 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2+deb12u2 [189 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u3 [316 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+deb12u1 [472 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1+deb12u1 [565 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 hmmer amd64 3.3.2+dfsg-1 [1153 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 prodigal amd64 1:2.6.3-6 [508 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 busco amd64 5.4.4-1 [71.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 114 MB in 5s (23.3 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6100 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.36_5.36.0-7+deb12u3_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8432 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8964 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.0.18-1~deb12u1_amd64.deb ... Unpacking openssl (3.0.18-1~deb12u1) ... 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Unpacking python3-reportlab (3.6.12-1+deb12u1) ... Selecting previously unselected package xml-core. Preparing to unpack .../71-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../72-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../73-python3-biopython_1.80+dfsg-4+b1_amd64.deb ... Unpacking python3-biopython (1.80+dfsg-4+b1) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../74-libdivsufsort3_2.0.1-5_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-5) ... Selecting previously unselected package hmmer. Preparing to unpack .../75-hmmer_3.3.2+dfsg-1_amd64.deb ... Unpacking hmmer (3.3.2+dfsg-1) ... Selecting previously unselected package prodigal. Preparing to unpack .../76-prodigal_1%3a2.6.3-6_amd64.deb ... Unpacking prodigal (1:2.6.3-6) ... Selecting previously unselected package busco. Preparing to unpack .../77-busco_5.4.4-1_amd64.deb ... Unpacking busco (5.4.4-1) ... Setting up media-types (10.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up java-common (0.74) ... Setting up libcommons-cli-java (1.5.0-1) ... Setting up prodigal (1:2.6.3-6) ... Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u8) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2+deb12u2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.14-1) ... Setting up liblog4j1.2-java (1.2.17-11) ... Setting up libgomp1:amd64 (12.2.0-14+deb12u1) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u4) ... Setting up libasound2-data (1.2.8-1) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u3) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:amd64 (0.8-10+deb12u1) ... Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14+deb12u1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2+deb12u1) ... Setting up libpcsclite1:amd64 (1.9.9-2) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u4) ... Setting up libgfortran5:amd64 (12.2.0-14+deb12u1) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u3) ... Setting up libasound2:amd64 (1.2.8-1+b1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+deb12u2) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u4) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up openssl (3.0.18-1~deb12u1) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up readline-common (8.2-1.3) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-10+deb12u1) ... Setting up libnss3:amd64 (2:3.87.1-1+deb12u1) ... Setting up ca-certificates (20230311+deb12u1) ... Updating certificates in /etc/ssl/certs... 142 added, 0 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-5+deb12u4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u4) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up xml-core (0.18+nmu1) ... Setting up hmmer (3.3.2+dfsg-1) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up ca-certificates-java (20230710~deb12u1) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.15-1) ... Setting up libavahi-client3:amd64 (0.8-10+deb12u1) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u3) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libmpj-java (0.44+dfsg-4) ... Setting up perl (5.36.0-7+deb12u3) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libcups2:amd64 (2.4.2-3+deb12u9) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up mailcap (3.70+nmu1) ... Setting up mime-support (3.66) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6+deb12u6) ... Setting up fontconfig-config (2.14.1-4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+deb12u1) ... Setting up python3-reportlab (3.6.12-1+deb12u1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up python3-pkg-resources (66.1.1-1+deb12u2) ... Setting up python3-renderpm:amd64 (3.6.12-1+deb12u1) ... Setting up python3-numpy (1:1.24.2-1+deb12u1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.17+10-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Processing triggers for libc-bin (2.36-9+deb12u13) ... Processing triggers for ca-certificates-java (20230710~deb12u1) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up bbmap (39.01+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Setting up busco (5.4.4-1) ... Processing triggers for ca-certificates (20230311+deb12u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230710~deb12u1) ... done. 1m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco'] 1m13.3s INFO: Running scripts post_install 1m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 1m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 1m13.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 1m14.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 1m14.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpsevuwvcl to stable 1m14.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 1m14.6s INFO: Running scripts pre_distupgrade 1m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_exceptions'] 1m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_exceptions'] 1m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'update'] 1m18.2s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [140 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9670 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6484 kB] Fetched 16.3 MB in 3s (5881 kB/s) Reading package lists... 1m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'update'] 1m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-yf', 'dist-upgrade'] 2m6.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl2 libperl5.36 libpython3.11-minimal libpython3.11-stdlib libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-autocommand python3-inflect python3-jaraco.context python3-jaraco.functools python3-more-itertools python3-pkg-resources python3-six python3-typeguard python3-typing-extensions python3.11 python3.11-minimal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libhogweed6 libnettle8 libpng16-16 libreadline8 libssl3 libtirpc3 python3-renderpm python3-reportlab-accel The following NEW packages will be installed: gcc-14-base libapt-pkg7.0 libatomic1 libcairo2 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libhogweed6t64 liblastlog2-2 libnettle8t64 libperl5.40 libpixman-1-0 libpng16-16t64 libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsharpyuv0 libssl3t64 libtirpc3t64 libunistring5 libx11-6 libx11-data libxcb-render0 libxcb-shm0 libxext6 libxrender1 login.defs netbase openssl-provider-legacy perl-modules-5.40 python3-autocommand python3-cairo python3-chardet python3-freetype python3-inflect python3-jaraco.context python3-jaraco.functools python3-more-itertools python3-numpy-dev python3-pytz python3-rlpycairo python3-typeguard python3-typing-extensions python3.13 python3.13-minimal sqv The following packages will be upgraded: adduser apt base-files base-passwd bash bbmap bsdutils busco ca-certificates ca-certificates-java coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils fontconfig-config fonts-urw-base35 gcc-12-base gpgv grep gzip hmmer hostname init-system-helpers java-common libacl1 libapache-pom-java libasound2-data libattr1 libaudit-common libaudit1 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libblkid1 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libcap2 libcom-err2 libcommons-cli-java libcommons-codec-java libcommons-io-java libcrypt1 libdbus-1-3 libdebconfclient0 libdeflate0 libdivsufsort3 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 liblz4-1 liblzma5 libmd0 libmount1 libncursesw6 libnsl2 libnspr4 libnss3 libopenjp2-7 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcsclite1 libpython3-stdlib libquadmath0 libraqm0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libstdc++6 libsystemd0 libtasn1-6 libtiff6 libtinfo6 libtirpc-common libudev1 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxxhash0 libzstd1 login logsave mailcap mawk media-types mount ncurses-base ncurses-bin openssl passwd perl perl-base python3 python3-biopython python3-dateutil python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-reportlab python3-six python3-tz readline-common sed sgml-base sysvinit-utils tar tzdata usr-is-merged util-linux util-linux-extra x11-common xfonts-utils xml-core zlib1g 162 upgraded, 48 newly installed, 13 to remove and 0 not upgraded. Need to get 108 MB of archives. After this operation, 114 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 base-files amd64 13.8+deb13u3 [73.3 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.41-12+deb13u1 [2851 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.41-12+deb13u1 [637 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 debianutils amd64 5.23.2 [92.4 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.37-2+b7 [1501 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libcap2 amd64 1:2.75-10+b3 [28.8 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.9-1~deb13u1 [453 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.41-5 [110 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [304 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.5.4-1~deb13u1 [1495 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b7 [25.0 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:20 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.5.4-1~deb13u1 [308 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.5.4-1~deb13u1 [2441 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 coreutils amd64 9.7-3 [3024 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 dash amd64 0.5.12-12 [98.5 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 diffutils amd64 1:3.10-4 [387 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 dpkg amd64 1.22.21 [1538 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 findutils amd64 4.10.0-3 [700 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 grep amd64 3.11-4 [431 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 gzip amd64 1.13-1 [138 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 hostname amd64 3.25 [11.0 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.4-2 [186 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libcap-ng0 amd64 0.8.5-4+b1 [17.6 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libaudit1 amd64 1:4.0.2-2+b2 [55.1 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.1-6 [267 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 perl-base amd64 5.40.1-6 [1666 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 debconf all 1.5.91 [121 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libpam0g amd64 1.7.0-5 [69.9 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.46-1~deb13u1 [299 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libpam-modules-bin amd64 1.7.0-5 [49.1 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libpam-modules amd64 1.7.0-5 [179 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.41-5 [112 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5+20250216-2 [348 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5+20250216-2 [438 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 sed amd64 4.9-2 [329 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.41-5 [171 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-7 [914 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 liblastlog2-2 amd64 2.41-5 [28.5 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.41-5 [209 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.41-5 [143 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.41-5 [37.6 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.41-5 [1235 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 util-linux-extra amd64 2.41-5 [300 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 sqv amd64 1.3.0-3+b2 [661 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 liblz4-1 amd64 1.10.0-4 [63.9 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.8.1-1 [309 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.9-1~deb13u1 [152 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libapt-pkg7.0 amd64 3.0.3 [1113 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.280 [10.6 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 base-passwd amd64 3.6.7 [53.7 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-2 [131 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libsemanage-common all 3.8.1-1 [7812 B] Get:81 http://deb.debian.org/debian trixie/main amd64 libsepol2 amd64 3.8.1-1 [296 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.4-2 [1229 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 adduser all 3.152 [191 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 debian-archive-keyring all 2025.1 [179 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libseccomp2 amd64 2.6.0-2 [51.7 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 apt amd64 3.0.3 [1452 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 init-system-helpers all 1.69~deb13u1 [39.4 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5+20250216-2 [273 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.14-4 [34.1 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 logsave amd64 1.47.2-3+b7 [24.9 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 libext2fs2t64 amd64 1.47.2-3+b7 [213 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 e2fsprogs amd64 1.47.2-3+b7 [591 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:95 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.84.4-3~deb13u2 [1518 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.48-1+deb13u1 [283 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-2.1~deb13u1 [205 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.7.0-3+deb13u1 [346 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-4+deb13u1 [260 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.2-3 [4280 B] Get:144 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.2-3 [152 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24+deb13u1 [217 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:154 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:157 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:167 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.41-5 [162 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:170 http://deb.debian.org/debian trixie/main amd64 gpgv amd64 2.4.7-21+deb13u1+b1 [241 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:172 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:174 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 usr-is-merged all 39+nmu2 [5936 B] Get:176 http://deb.debian.org/debian trixie/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20250419 [162 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 bbmap all 39.20+dfsg-2 [10.8 MB] Get:179 http://deb.debian.org/debian trixie/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 hmmer amd64 3.4+dfsg-2 [1062 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 busco amd64 5.5.0-3 [293 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 gcc-12-base amd64 12.4.0-5 [43.9 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 java-common all 0.76 [6776 B] Get:186 http://deb.debian.org/debian trixie/main amd64 libapache-pom-java all 33-2 [5852 B] Get:187 http://deb.debian.org/debian trixie/main amd64 libasound2-data all 1.2.14-1 [21.1 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 libavahi-client3 amd64 0.8-16 [48.4 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 libavahi-common3 amd64 0.8-16 [44.2 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 libavahi-common-data amd64 0.8-16 [112 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get:192 http://deb.debian.org/debian trixie/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 libcommons-codec-java all 1.18.0-1 [304 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 libcommons-io-java all 2.19.0-1 [524 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 libnss3 amd64 2:3.110-1 [1393 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 libpcsclite1 amd64 2.3.3-1 [55.2 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 libss2 amd64 1.47.2-3+b7 [29.7 kB] Get:199 http://deb.debian.org/debian trixie/main amd64 mailcap all 3.74 [32.8 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:201 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:206 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:207 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.17.0-1 [16.5 kB] Get:209 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 108 MB in 5s (23.7 MB/s) (Reading database ... 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Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15402 files and directories currently installed.) Preparing to unpack .../libc6_2.41-12+deb13u1_amd64.deb ... Unpacking libc6:amd64 (2.41-12+deb13u1) over (2.36-9+deb12u13) ... Setting up libc6:amd64 (2.41-12+deb13u1) ... (Reading database ... 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Installing new version of config file /etc/login.defs ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libdb5.3. libperl5.36:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15488 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15482 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15489 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.38-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.38-1) over (1:4.4.33-2) ... Setting up libcrypt1:amd64 (1:4.4.38-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15489 files and directories currently installed.) Preparing to unpack .../perl_5.40.1-6_amd64.deb ... Unpacking perl (5.40.1-6) over (5.36.0-7+deb12u3) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../perl-modules-5.40_5.40.1-6_all.deb ... Unpacking perl-modules-5.40 (5.40.1-6) ... dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested: libperl5.36:amd64 depends on libgdbm6 (>= 1.21). libgdbm-compat4:amd64 depends on libgdbm6 (>= 1.16). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17052 files and directories currently installed.) Removing libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm6t64:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17053 files and directories currently installed.) Removing libgdbm-compat4:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17047 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.24-2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.24-2) ... Selecting previously unselected package libperl5.40:amd64. Preparing to unpack .../libperl5.40_5.40.1-6_amd64.deb ... Unpacking libperl5.40:amd64 (5.40.1-6) ... Preparing to unpack .../perl-base_5.40.1-6_amd64.deb ... Unpacking perl-base (5.40.1-6) over (5.36.0-7+deb12u3) ... Setting up perl-base (5.40.1-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17578 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-6_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-6) over (1.0.8-5+b1) ... Setting up libbz2-1.0:amd64 (1.0.8-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17577 files and directories currently installed.) Preparing to unpack .../debconf_1.5.91_all.deb ... Unpacking debconf (1.5.91) over (1.5.82) ... Setting up debconf (1.5.91) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17576 files and directories currently installed.) Preparing to unpack .../libpam0g_1.7.0-5_amd64.deb ... Unpacking libpam0g:amd64 (1.7.0-5) over (1.5.2-6+deb12u2) ... Setting up libpam0g:amd64 (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17575 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1~deb13u1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1~deb13u1) over (10.42-1) ... Setting up libpcre2-8-0:amd64 (10.46-1~deb13u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17575 files and directories currently installed.) Preparing to unpack .../libselinux1_3.8.1-1_amd64.deb ... Unpacking libselinux1:amd64 (3.8.1-1) over (3.4-1+b6) ... Setting up libselinux1:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17575 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.7.0-5_amd64.deb ... Unpacking libpam-modules-bin (1.7.0-5) over (1.5.2-6+deb12u2) ... Setting up libpam-modules-bin (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17566 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.7.0-5_amd64.deb ... Unpacking libpam-modules:amd64 (1.7.0-5) over (1.5.2-6+deb12u2) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.7.0-5) ... Installing new version of config file /etc/security/access.conf ... Installing new version of config file /etc/security/namespace.init ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17515 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.7.0-5_all.deb ... Unpacking libpam-runtime (1.7.0-5) over (1.5.2-6+deb12u2) ... Setting up libpam-runtime (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17575 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41-5_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41-5) over (1:4.13+dfsg1-1+deb12u2) ... Setting up login (1:4.16.0-2+really2.41-5) ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17477 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.4-4) ... Preparing to unpack .../libtinfo6_6.5+20250216-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.4-4) ... Setting up libtinfo6:amd64 (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17477 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... Unpacking ncurses-bin (6.5+20250216-2) over (6.4-4) ... Setting up ncurses-bin (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17477 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17477 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41-5_amd64.deb ... Unpacking libblkid1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libblkid1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17478 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.46.1-7_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-7) over (3.40.1-2+deb12u2) ... Setting up libsqlite3-0:amd64 (3.46.1-7) ... Selecting previously unselected package liblastlog2-2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17478 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41-5_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17485 files and directories currently installed.) Preparing to unpack .../libmount1_2.41-5_amd64.deb ... Unpacking libmount1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libmount1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17486 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41-5_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libsmartcols1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17487 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41-5_amd64.deb ... Unpacking libuuid1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libuuid1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17488 files and directories currently installed.) Preparing to unpack .../util-linux_2.41-5_amd64.deb ... Unpacking util-linux (2.41-5) over (2.38.1-5+deb12u3) ... Setting up util-linux (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17453 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.41-5_amd64.deb ... Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.41-5) over (2.38.1-5+deb12u3) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux-extra (2.41-5) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17503 files and directories currently installed.) Removing libnettle8:amd64 (3.8.1-2) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17495 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10.1-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.1-1) ... Setting up libnettle8t64:amd64 (3.10.1-1) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17504 files and directories currently installed.) Removing libhogweed6:amd64 (3.8.1-2) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17498 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10.1-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.1-1) ... Setting up libhogweed6t64:amd64 (3.10.1-1) ... Selecting previously unselected package sqv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17505 files and directories currently installed.) Preparing to unpack .../sqv_1.3.0-3+b2_amd64.deb ... Unpacking sqv (1.3.0-3+b2) ... Setting up sqv (1.3.0-3+b2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17519 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... Unpacking liblz4-1:amd64 (1.10.0-4) over (1.9.4-1) ... Setting up liblz4-1:amd64 (1.10.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17519 files and directories currently installed.) Preparing to unpack .../liblzma5_5.8.1-1_amd64.deb ... Unpacking liblzma5:amd64 (5.8.1-1) over (5.4.1-1) ... Setting up liblzma5:amd64 (5.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17519 files and directories currently installed.) Preparing to unpack .../libudev1_257.9-1~deb13u1_amd64.deb ... Unpacking libudev1:amd64 (257.9-1~deb13u1) over (252.39-1~deb12u1) ... Setting up libudev1:amd64 (257.9-1~deb13u1) ... Selecting previously unselected package libapt-pkg7.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17519 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.0.3_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17568 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.280_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.280) over (0.270) ... Setting up libdebconfclient0:amd64 (0.280) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17568 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.7_amd64.deb ... Unpacking base-passwd (3.6.7) over (3.6.1) ... Setting up base-passwd (3.6.7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17569 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.2-2+b1_amd64.deb ... Unpacking libacl1:amd64 (2.3.2-2+b1) over (2.3.1-3) ... Setting up libacl1:amd64 (2.3.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17570 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-3_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-3) over (1:2.5.1-4) ... Setting up libattr1:amd64 (1:2.5.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17570 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2+b1_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2+b1) over (1.0.4-2) ... Setting up libmd0:amd64 (1.1.0-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17571 files and directories currently installed.) Preparing to unpack .../libbsd0_0.12.2-2_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-2) over (0.11.7-2) ... Setting up libbsd0:amd64 (0.12.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17571 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.8.1-1_all.deb ... Unpacking libsemanage-common (3.8.1-1) over (3.4-1) ... Setting up libsemanage-common (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17570 files and directories currently installed.) Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8.1-1) over (3.4-2.1) ... Setting up libsepol2:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17570 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.8.1-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.8.1-1) over (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17569 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.17.4-2_amd64.deb ... Unpacking passwd (1:4.17.4-2) over (1:4.13+dfsg1-1+deb12u2) ... Setting up passwd (1:4.17.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17595 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.152_all.deb ... Unpacking adduser (3.152) over (3.134) ... Setting up adduser (3.152) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17603 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2025.1_all.deb ... Unpacking debian-archive-keyring (2025.1) over (2023.3+deb12u2) ... Setting up debian-archive-keyring (2025.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17615 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.6.0-2_amd64.deb ... Unpacking libseccomp2:amd64 (2.6.0-2) over (2.5.4-1+deb12u1) ... Setting up libseccomp2:amd64 (2.6.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17615 files and directories currently installed.) Preparing to unpack .../archives/apt_3.0.3_amd64.deb ... Unpacking apt (3.0.3) over (2.6.1) ... Setting up apt (3.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17607 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69~deb13u1_all.deb ... Unpacking init-system-helpers (1.69~deb13u1) over (1.65.2+deb12u1) ... Setting up init-system-helpers (1.69~deb13u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17607 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... Unpacking ncurses-base (6.5+20250216-2) over (6.4-4) ... Setting up ncurses-base (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17605 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.14-4_amd64.deb ... Unpacking sysvinit-utils (3.14-4) over (3.06-4) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.14-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17605 files and directories currently installed.) Preparing to unpack .../logsave_1.47.2-3+b7_amd64.deb ... Unpacking logsave (1.47.2-3+b7) over (1.47.0-2+b2) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2+b2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17605 files and directories currently installed.) Removing libext2fs2:amd64 (1.47.0-2+b2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17597 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.2-3+b7_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.2-3+b7) ... Setting up libcom-err2:amd64 (1.47.2-3+b7) ... Setting up libext2fs2t64:amd64 (1.47.2-3+b7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17614 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.2-3+b7_amd64.deb ... Unpacking e2fsprogs (1.47.2-3+b7) over (1.47.0-2+b2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../libatomic1_14.2.0-19_amd64.deb ... Unpacking libatomic1:amd64 (14.2.0-19) ... Preparing to unpack .../libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17615 files and directories currently installed.) Preparing to unpack .../libharfbuzz0b_10.2.0-1+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (10.2.0-1+b1) over (6.0.0+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17615 files and directories currently installed.) Removing libglib2.0-0:amd64 (2.74.6-2+deb12u8) ... Selecting previously unselected package libglib2.0-0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17591 files and directories currently installed.) Preparing to unpack .../libglib2.0-0t64_2.84.4-3~deb13u2_amd64.deb ... libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:amd64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... removed '/var/lib/dpkg/info/libglib2.0-0:amd64.postrm' Unpacking libglib2.0-0t64:amd64 (2.84.4-3~deb13u2) ... Preparing to unpack .../libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) over (2.12.1+dfsg-5+deb12u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17616 files and directories currently installed.) Removing libpng16-16:amd64 (1.6.39-2+deb12u1) ... Selecting previously unselected package libpng16-16t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17605 files and directories currently installed.) Preparing to unpack .../libpng16-16t64_1.6.48-1+deb13u1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.48-1+deb13u1) ... Preparing to unpack .../readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) over (8.2-1.3) ... dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libreadline8 (>= 7.0~beta). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17617 files and directories currently installed.) Removing libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Preparing to unpack .../libtirpc-common_1.3.6+ds-1_all.deb ... Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) over (1.3.0-2) ... dpkg: libtirpc3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libtirpc3 (>= 1.0.2). (Reading database ... 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Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up java-common (0.76) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up libcommons-cli-java (1.6.0-1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up bbmap (39.20+dfsg-2) ... Setting up libcommons-io-java (2.19.0-1) ... Setting up libtirpc-common (1.3.6+ds-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up x11-common (1:7.7+24+deb13u1) ... Installing new version of config file /etc/X11/Xsession.d/20x11-common_process-args ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.23-2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up gcc-12-base:amd64 (12.4.0-5) ... Setting up tzdata (2025b-4+deb13u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 28 00:07:50 UTC 2026. Universal Time is now: Sat Feb 28 00:07:50 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasound2-data (1.2.14-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up libblas3:amd64 (3.12.1-6) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libnspr4:amd64 (2:4.36-1) ... Setting up libapache-pom-java (33-2) ... Setting up libavahi-common-data:amd64 (0.8-16) ... Setting up libdbus-1-3:amd64 (1.16.2-2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libquadmath0:amd64 (14.2.0-19) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libpng16-16t64:amd64 (1.6.48-1+deb13u1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Setting up libatomic1:amd64 (14.2.0-19) ... Setting up libss2:amd64 (1.47.2-3+b7) ... Setting up libpcsclite1:amd64 (2.3.3-1) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up logsave (1.47.2-3+b7) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up mount (2.41-5) ... Setting up perl-modules-5.40 (5.40.1-6) ... Setting up libtiff6:amd64 (4.7.0-3+deb13u1) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1~deb13u1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up mawk (1.3.4.20250131-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libcommons-codec-java (1.18.0-1) ... Setting up libdivsufsort3:amd64 (2.0.1-6+b1) ... Setting up openssl (3.5.4-1~deb13u1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up liblapack3:amd64 (3.12.1-6) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libavahi-common3:amd64 (0.8-16) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up e2fsprogs (1.47.2-3+b7) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/mke2fs.conf ... Setting up libnss3:amd64 (2:3.110-1) ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt, it does not contain exactly one certificate or CRL 21 added, 13 removed; done. Setting up perl (5.40.1-6) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3~deb13u2) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up xml-core (0.19) ... Setting up hmmer (3.4+dfsg-2) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up ca-certificates-java (20240118) ... done. Setting up mailcap (3.74) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libavahi-client3:amd64 (0.8-16) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up python3.13 (3.13.5-2) ... Setting up python3 (3.13.5-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-six (1.17.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-pytz (2025.2-3) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-tz (2025.2-3) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-9) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-reportlab (4.3.1-1) ... Setting up python3-biopython (1.85+dfsg-4) ... Setting up busco (5.5.0-3) ... /usr/lib/python3/dist-packages/busco/BuscoPlacer.py:211: SyntaxWarning: invalid escape sequence '\[' "[^0-9][0-9]*:[0-9]*[^0-9]{0,1}[0-9]*[^0-9]{0,2}[0-9]*\[%s\]" Processing triggers for libc-bin (2.41-12+deb13u1) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for sgml-base (1.31+nmu1) ... Processing triggers for ca-certificates-java (20240118) ... done. 2m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-yf', 'dist-upgrade'] 2m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m7.4s DUMP: 6d53b35ca35697b2767d0c31d63fde0a - 2m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'show', '--no-all-versions', 'busco'] 2m7.5s DUMP: Package: busco Version: 5.5.0-3 Installed-Size: 1236 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, python3-pandas, python3-biopython, hmmer, prodigal, bbmap Description-en: benchmarking sets of universal single-copy orthologs Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO). . * Automated selection of lineages issued from https://www.orthodb.org/ * Automated download of all necessary files and datasets to conduct a run * Use prodigal for non-eukaryotic genomes Description-md5: 40a9b5e0784ce3cc899761f6a14504c5 Homepage: https://gitlab.com/ezlab/busco Section: science Priority: optional Filename: pool/main/b/busco/busco_5.5.0-3_amd64.deb Size: 292828 MD5sum: 73ef7fcb3f81c679deab1c5a6fa45500 SHA256: d8ad9570367965899e264e3179783965bea50571ec803cef4f29ac93779e1acd 2m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'show', '--no-all-versions', 'busco'] 2m7.5s INFO: apt-cache knows about the following packages: busco 2m7.5s INFO: Running scripts pre_install 2m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 2m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 2m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 2m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 2m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 2m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 2m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 2m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 2m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 2m7.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.3,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 2m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 2m7.6s DUMP: busco: Installed: 5.5.0-3 Candidate: 5.5.0-3 Version table: *** 5.5.0-3 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 2m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 2m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco'] 2m8.0s DUMP: Reading package lists... Building dependency tree... Reading state information... busco is already the newest version (5.5.0-3). The following packages were automatically installed and are no longer required: libnsl2 libperl5.36 libpython3.11-minimal libpython3.11-stdlib libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-autocommand python3-inflect python3-jaraco.context python3-jaraco.functools python3-more-itertools python3-pkg-resources python3-six python3-typeguard python3-typing-extensions python3.11 python3.11-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco'] 2m8.0s INFO: Running scripts post_install 2m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 2m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 2m8.1s INFO: Running scripts post_distupgrade 2m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_exceptions'] 2m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_exceptions'] 2m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_zz_backports'] 2m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_zz_backports'] 2m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 2m9.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 2m9.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpsevuwvcl to testing 2m9.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 2m9.6s INFO: Running scripts pre_distupgrade 2m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_exceptions'] 2m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_exceptions'] 2m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'update'] 2m12.7s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [137 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9570 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6416 kB] Fetched 16.1 MB in 2s (6916 kB/s) Reading package lists... 2m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'update'] 2m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-yf', 'dist-upgrade'] 2m48.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gcc-14-base libgomp1 libnsl2 libperl5.36 libpython3.11-minimal libpython3.11-stdlib libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-autocommand python3-chardet python3-inflect python3-jaraco.context python3-jaraco.functools python3-more-itertools python3-pkg-resources python3-six python3-typeguard python3-typing-extensions python3-tz python3.11 python3.11-minimal Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono gcc-15-base libabsl20240722 libaom3 libavif16 libc-gconv-modules-extra libdav1d7 libgav1-2 librav1e0.8 libsvtav1enc2 libyuv0 python3-charset-normalizer The following packages will be upgraded: adduser apt base-files base-passwd bash bbmap bsdutils diffutils dpkg e2fsprogs fontconfig-config gcc-12-base gcc-14-base gpgv grep hmmer init-system-helpers libacl1 libapt-pkg7.0 libasound2-data libatomic1 libattr1 libaudit-common libaudit1 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libblkid1 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcairo2 libcap-ng0 libcap2 libcom-err2 libcrypt1 libdb5.3t64 libdbus-1-3 libdebconfclient0 libdeflate0 libdivsufsort3 libexpat1 libext2fs2t64 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-s1 libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgmp10 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed6t64 libidn2-0 libimagequant0 libjbig0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblastlog2-2 liblcms2-2 liblerc4 liblz4-1 liblzma5 libmd0 libmount1 libncursesw6 libnettle8t64 libnsl2 libnspr4 libnss3 libopenjp2-7 libp11-kit0 libpam-modules libpam-modules-bin libpam0g libpcre2-8-0 libpcsclite1 libperl5.40 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libraqm0 libreadline8t64 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsharpyuv0 libsmartcols1 libsqlite3-0 libss2 libssl3t64 libstdc++6 libsystemd0 libtasn1-6 libtiff6 libtinfo6 libudev1 libunistring5 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libxxhash0 libzstd1 login login.defs logsave mailcap mawk media-types mount ncurses-base ncurses-bin openssl openssl-provider-legacy passwd perl perl-base perl-modules-5.40 python3 python3-autocommand python3-biopython python3-cairo python3-freetype python3-inflect python3-jaraco.context python3-minimal python3-more-itertools python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pil python3-pytz python3-reportlab python3-rlpycairo python3-six python3-typeguard python3-typing-extensions python3-tz python3.13 python3.13-minimal readline-common sqv sysvinit-utils tar tzdata util-linux util-linux-extra x11-common zlib1g 178 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. Need to get 106 MB of archives. After this operation, 70.0 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libc-gconv-modules-extra amd64 2.42-13 [1123 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libc6 amd64 2.42-13 [1814 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libc-bin amd64 2.42-13 [644 kB] Get:4 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-13 [54.8 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-13 [71.5 kB] Get:6 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:7 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-2 [1561 kB] Get:8 http://deb.debian.org/debian forky/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libbz2-1.0 amd64 1.0.8-6+b1 [40.4 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libxxhash0 amd64 0.8.3-2+b1 [28.1 kB] Get:11 http://deb.debian.org/debian forky/main amd64 liblz4-1 amd64 1.10.0-6 [70.5 kB] Get:12 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.2-2 [327 kB] Get:13 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.5-1 [311 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-3+b1 [308 kB] Get:15 http://deb.debian.org/debian forky/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-3 [89.0 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.5-1 [2449 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-13 [737 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 259.1-1 [471 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 259.1-1 [158 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.16 [1235 kB] Get:21 http://deb.debian.org/debian forky/main amd64 tar amd64 1.35+dfsg-4 [817 kB] Get:22 http://deb.debian.org/debian forky/main amd64 dpkg amd64 1.23.5 [1527 kB] Get:23 http://deb.debian.org/debian forky/main amd64 grep amd64 3.12-1 [443 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libtinfo6 amd64 6.6+20251231-1 [354 kB] Get:26 http://deb.debian.org/debian forky/main amd64 ncurses-bin amd64 6.6+20251231-1 [445 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libperl5.40 amd64 5.40.1-7 [4317 kB] Get:28 http://deb.debian.org/debian forky/main amd64 perl amd64 5.40.1-7 [267 kB] Get:29 http://deb.debian.org/debian forky/main amd64 perl-base amd64 5.40.1-7 [1679 kB] Get:30 http://deb.debian.org/debian forky/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libcrypt1 amd64 1:4.5.1-1 [98.0 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11 [710 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libgdbm6t64 amd64 1.26-1+b1 [78.9 kB] Get:34 http://deb.debian.org/debian forky/main amd64 libgdbm-compat4t64 amd64 1.26-1+b1 [53.1 kB] Get:35 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.46.1-9 [920 kB] Get:36 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.3-4 [106 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.3-4 [174 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.3-4 [212 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.3-4 [145 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.3-4 [39.1 kB] Get:41 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.3-4 [94.2 kB] Get:42 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.3-4 [1166 kB] Get:43 http://deb.debian.org/debian forky/main amd64 util-linux-extra amd64 2.41.3-4 [419 kB] Get:44 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.3-4 [164 kB] Get:45 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.3-4 [30.0 kB] Get:46 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:47 http://deb.debian.org/debian forky/main amd64 libcap-ng0 amd64 0.9.1-1 [17.4 kB] Get:48 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.2-1+b1 [60.2 kB] Get:49 http://deb.debian.org/debian forky/main amd64 libpam0g amd64 1.7.0-5+b1 [70.4 kB] Get:50 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1+b1 [298 kB] Get:51 http://deb.debian.org/debian forky/main amd64 libselinux1 amd64 3.9-4+b1 [86.1 kB] Get:52 http://deb.debian.org/debian forky/main amd64 libpam-modules-bin amd64 1.7.0-5+b1 [49.8 kB] Get:53 http://deb.debian.org/debian forky/main amd64 libpam-modules amd64 1.7.0-5+b1 [179 kB] Get:54 http://deb.debian.org/debian forky/main amd64 libdebconfclient0 amd64 0.282+b2 [11.2 kB] Get:55 http://deb.debian.org/debian forky/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Get:56 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-2 [211 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libacl1 amd64 2.3.2-3 [32.7 kB] Get:58 http://deb.debian.org/debian forky/main amd64 libattr1 amd64 1:2.5.2-4 [23.0 kB] Get:59 http://deb.debian.org/debian forky/main amd64 libmd0 amd64 1.1.0-2+b2 [36.2 kB] Get:60 http://deb.debian.org/debian forky/main amd64 libbsd0 amd64 0.12.2-2+b1 [132 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libsemanage-common all 3.9-1 [7888 B] Get:62 http://deb.debian.org/debian forky/main amd64 libsepol2 amd64 3.9-2 [300 kB] Get:63 http://deb.debian.org/debian forky/main amd64 libsemanage2 amd64 3.9-1+b1 [96.9 kB] Get:64 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-2 [1286 kB] Get:65 http://deb.debian.org/debian forky/main amd64 adduser all 3.154 [210 kB] Get:66 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b1 [561 kB] Get:67 http://deb.debian.org/debian forky/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Get:68 http://deb.debian.org/debian forky/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Get:69 http://deb.debian.org/debian forky/main amd64 sqv amd64 1.3.0-5 [648 kB] Get:70 http://deb.debian.org/debian forky/main amd64 libseccomp2 amd64 2.6.0-2+b1 [52.2 kB] Get:71 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.16 [1529 kB] Get:72 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:73 http://deb.debian.org/debian forky/main amd64 ncurses-base all 6.6+20251231-1 [277 kB] Get:74 http://deb.debian.org/debian forky/main amd64 sysvinit-utils amd64 3.15-6 [35.0 kB] Get:75 http://deb.debian.org/debian forky/main amd64 logsave amd64 1.47.2-3+b8 [24.9 kB] Get:76 http://deb.debian.org/debian forky/main amd64 libext2fs2t64 amd64 1.47.2-3+b8 [216 kB] Get:77 http://deb.debian.org/debian forky/main amd64 e2fsprogs amd64 1.47.2-3+b8 [593 kB] Get:78 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.4-1 [116 kB] Get:79 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get:80 http://deb.debian.org/debian forky/main amd64 tzdata all 2025c-3 [263 kB] Get:81 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Get:82 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB] Get:83 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-4 [74.8 kB] Get:84 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:85 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Get:86 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Get:87 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Get:88 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-3 [2935 kB] Get:89 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.9-3 [27.6 kB] Get:90 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.9-3 [27.6 kB] Get:91 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [7487 kB] Get:92 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [138 kB] Get:93 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7+b1 [209 kB] Get:94 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-13 [862 kB] Get:95 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7+b1 [2550 kB] Get:96 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-5 [31.8 kB] Get:97 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-3 [6583 kB] Get:98 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.9-3 [10.5 kB] Get:99 http://deb.debian.org/debian forky/main amd64 libcap2 amd64 1:2.75-10+b5 [28.8 kB] Get:100 http://deb.debian.org/debian forky/main amd64 mawk amd64 1.3.4.20260129-1 [143 kB] Get:101 http://deb.debian.org/debian forky/main amd64 bbmap all 39.20+dfsg-3 [10.8 MB] Get:102 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:103 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:104 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:105 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:106 http://deb.debian.org/debian forky/main amd64 gcc-12-base amd64 12.5.0-7 [45.1 kB] Get:107 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 15.2.0-13 [9492 B] Get:108 http://deb.debian.org/debian forky/main amd64 libquadmath0 amd64 15.2.0-13 [145 kB] Get:109 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 15.2.0-13 [141 kB] Get:110 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-12 [52.8 kB] Get:111 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.58-2 [89.7 kB] Get:112 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.11.2-3+b1 [871 kB] Get:113 http://deb.debian.org/debian forky/main amd64 gpgv amd64 2.4.8-5 [244 kB] Get:114 http://deb.debian.org/debian forky/main amd64 libdivsufsort3 amd64 2.0.1-7 [45.8 kB] Get:115 http://deb.debian.org/debian forky/main amd64 hmmer amd64 3.4+dfsg-3 [1079 kB] Get:116 http://deb.debian.org/debian forky/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:117 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get:118 http://deb.debian.org/debian forky/main amd64 libasound2-data all 1.2.15.3-1 [21.2 kB] Get:119 http://deb.debian.org/debian forky/main amd64 libavahi-client3 amd64 0.8-18 [49.2 kB] Get:120 http://deb.debian.org/debian forky/main amd64 libavahi-common3 amd64 0.8-18 [45.2 kB] Get:121 http://deb.debian.org/debian forky/main amd64 libavahi-common-data amd64 0.8-18 [113 kB] Get:122 http://deb.debian.org/debian forky/main amd64 libdbus-1-3 amd64 1.16.2-4 [180 kB] Get:123 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.3-1+b1 [564 kB] Get:124 http://deb.debian.org/debian forky/main amd64 libgav1-2 amd64 0.20.0-2 [373 kB] Get:125 http://deb.debian.org/debian forky/main amd64 librav1e0.8 amd64 0.8.1-7 [978 kB] Get:126 http://deb.debian.org/debian forky/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:127 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [176 kB] Get:128 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.3.0-1+b2 [137 kB] Get:129 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:130 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.55-1 [288 kB] Get:131 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.14.1+dfsg-2 [493 kB] Get:132 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:133 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1+b1 [259 kB] Get:134 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1+b1 [20.8 kB] Get:135 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-2 [27.9 kB] Get:136 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:137 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1+b1 [824 kB] Get:138 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:139 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:140 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:141 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1+b1 [27.7 kB] Get:142 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-3 [544 kB] Get:143 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b8 [25.1 kB] Get:144 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2+b1 [49.5 kB] Get:145 http://deb.debian.org/debian forky/main amd64 libfontenc1 amd64 1:1.1.8-1+b3 [23.4 kB] Get:146 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-5 [26.7 kB] Get:147 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.87.2-3 [1552 kB] Get:148 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11+b1 [77.0 kB] Get:149 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:150 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:151 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:152 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:153 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6+b1 [9784 B] Get:154 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.3.2-2 [514 kB] Get:155 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2+b1 [466 kB] Get:156 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4+b1 [110 kB] Get:157 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.1-1+b1 [258 kB] Get:158 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:159 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.17-1 [163 kB] Get:160 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5+b1 [199 kB] Get:161 http://deb.debian.org/debian forky/main amd64 libnsl2 amd64 1.3.0-3+b4 [40.5 kB] Get:162 http://deb.debian.org/debian forky/main amd64 libnspr4 amd64 2:4.38.2-1 [111 kB] Get:163 http://deb.debian.org/debian forky/main amd64 libnss3 amd64 2:3.120-1 [1430 kB] Get:164 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.4-1 [206 kB] Get:165 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.26.2-2 [470 kB] Get:166 http://deb.debian.org/debian forky/main amd64 libpcsclite1 amd64 2.4.1-1 [56.1 kB] Get:167 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.4-1 [14.3 kB] Get:168 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b1 [116 kB] Get:169 http://deb.debian.org/debian forky/main amd64 libss2 amd64 1.47.2-3+b8 [29.7 kB] Get:170 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.21.0-2 [50.4 kB] Get:171 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1+b1 [336 kB] Get:172 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get:173 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.5.0-0.1+b1 [114 kB] Get:174 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.5.0-0.1+b1 [126 kB] Get:175 http://deb.debian.org/debian forky/main amd64 mailcap all 3.75 [33.5 kB] Get:176 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.5-1 [1500 kB] Get:177 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-4 [13.7 kB] Get:178 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.4-2 [171 kB] Get:179 http://deb.debian.org/debian forky/main amd64 python3-pil amd64 12.0.0-1+b1 [551 kB] Get:180 http://deb.debian.org/debian forky/main amd64 python3-cairo amd64 1.27.0-2+b1 [132 kB] Get:181 http://deb.debian.org/debian forky/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get:182 http://deb.debian.org/debian forky/main amd64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get:183 http://deb.debian.org/debian forky/main amd64 python3-reportlab all 4.4.10-1 [1173 kB] Get:184 http://deb.debian.org/debian forky/main amd64 python3-biopython amd64 1.86+dfsg-1+b1 [1632 kB] Get:185 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get:186 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Get:187 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-2 [37.2 kB] Get:188 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get:189 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-2 [8184 B] Get:190 http://deb.debian.org/debian forky/main amd64 python3-six all 1.17.0-2 [16.6 kB] Get:191 http://deb.debian.org/debian forky/main amd64 python3-tz all 2025.2-5 [4348 B] Get:192 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Preconfiguring packages ... Fetched 106 MB in 3s (31.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19057 files and directories currently installed.) Preparing to unpack .../libc6_2.42-13_amd64.deb ... Unpacking libc6:amd64 (2.42-13) over (2.41-12+deb13u1) ... Selecting previously unselected package libc-gconv-modules-extra:amd64. Preparing to unpack .../libc-gconv-modules-extra_2.42-13_amd64.deb ... Unpacking libc-gconv-modules-extra:amd64 (2.42-13) ... 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Setting up libsqlite3-0:amd64 (3.46.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19075 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.3-4_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.3-4) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libblkid1_2.41.3-4_amd64.deb ... Unpacking libblkid1:amd64 (2.41.3-4) over (2.41-5) ... Setting up libblkid1:amd64 (2.41.3-4) ... (Reading database ... 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Removing 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Removing 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Removing 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Removing 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Removing 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Removing 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.41.3-4) over (2.41-5) ... Preparing to unpack .../mount_2.41.3-4_amd64.deb ... Unpacking mount (2.41.3-4) over (2.41-5) ... Preparing to unpack .../liblastlog2-2_2.41.3-4_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.3-4) over (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41.3-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19075 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.1.2-1+b1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.1.2-1+b1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.1.2-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19075 files and directories currently installed.) Preparing to unpack .../libpam0g_1.7.0-5+b1_amd64.deb ... Unpacking libpam0g:amd64 (1.7.0-5+b1) over (1.7.0-5) ... Setting up libpam0g:amd64 (1.7.0-5+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19076 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1+b1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1+b1) over (10.46-1~deb13u1) ... Setting up libpcre2-8-0:amd64 (10.46-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19077 files and directories currently installed.) Preparing to unpack .../libselinux1_3.9-4+b1_amd64.deb ... Unpacking libselinux1:amd64 (3.9-4+b1) over (3.8.1-1) ... Setting up libselinux1:amd64 (3.9-4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19080 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.7.0-5+b1_amd64.deb ... Unpacking libpam-modules-bin (1.7.0-5+b1) over (1.7.0-5) ... Setting up libpam-modules-bin (1.7.0-5+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19081 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.7.0-5+b1_amd64.deb ... Unpacking libpam-modules:amd64 (1.7.0-5+b1) over (1.7.0-5) ... Setting up libpam-modules:amd64 (1.7.0-5+b1) ... (Reading database ... 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Leaving 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.2-3+b8) over (1.47.2-3+b7) ... Setting up libext2fs2t64:amd64 (1.47.2-3+b8) ... (Reading database ... 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Setting up libgfortran5:amd64 (15.2.0-13) ... Setting up libwebp7:amd64 (1.5.0-0.1+b1) ... Setting up libgav1-2:amd64 (0.20.0-2) ... Setting up libffi8:amd64 (3.5.2-3+b1) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up libdav1d7:amd64 (1.5.3-1+b1) ... Setting up mount (2.41.3-4) ... Setting up perl-modules-5.40 (5.40.1-7) ... Setting up gpgv (2.4.8-5) ... Setting up libtiff6:amd64 (4.7.1-1) ... Setting up libnsl2:amd64 (1.3.0-3+b4) ... Setting up libtasn1-6:amd64 (4.21.0-2) ... Setting up libopenjp2-7:amd64 (2.5.4-1) ... Setting up libx11-6:amd64 (2:1.8.12-1+b1) ... Setting up mawk (1.3.4.20260129-1) ... Setting up libkrb5-3:amd64 (1.22.1-2) ... Setting up libdivsufsort3:amd64 (2.0.1-7) ... Setting up openssl (3.5.5-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1+b1) ... Setting up libyuv0:amd64 (0.0.1922.20260106-1) ... Setting up readline-common (8.3-4) ... Setting up util-linux-extra (2.41.3-4) ... Setting up login (1:4.16.0-2+really2.41.3-4) ... Setting up libavif16:amd64 (1.3.0-1+b2) ... Setting up liblapack3:amd64 (3.12.1-7+b1) ... Setting up libxrender1:amd64 (1:0.9.12-1+b1) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1+b1) ... Setting up libavahi-common3:amd64 (0.8-18) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up e2fsprogs (1.47.2-3+b8) ... Setting up libidn2-0:amd64 (2.3.8-4+b1) ... Setting up libnss3:amd64 (2:3.120-1) ... Setting up libperl5.40:amd64 (5.40.1-7) ... Setting up perl (5.40.1-7) ... Setting up libglib2.0-0t64:amd64 (2.87.2-3) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.14.1+dfsg-2) ... Setting up libp11-kit0:amd64 (0.26.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up hmmer (3.4+dfsg-3) ... Setting up libharfbuzz0b:amd64 (12.3.2-2) ... Setting up mailcap (3.75) ... Setting up libpython3.13-stdlib:amd64 (3.13.12-1) ... Setting up libavahi-client3:amd64 (0.8-18) ... Setting up libpython3-stdlib:amd64 (3.13.9-3) ... Setting up python3.13 (3.13.12-1) ... Setting up python3 (3.13.9-3) ... Setting up python3-freetype (2.5.1-2) ... Setting up python3-autocommand (2.2.2-4) ... Setting up python3-six (1.17.0-2) ... Setting up libraqm0:amd64 (0.10.4-1) ... Setting up python3-typing-extensions (4.15.0-2) ... Setting up python3-numpy (1:2.3.5+ds-3) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-jaraco.context (6.0.1-2) ... Setting up python3-charset-normalizer (3.4.4-2) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... Setting up python3-typeguard (4.4.4-2) ... Setting up python3-pytz (2025.2-5) ... Setting up python3-tz (2025.2-5) ... Setting up python3-pil:amd64 (12.0.0-1+b1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-pandas (2.3.3+dfsg-3) ... Processing triggers for sgml-base (1.31+nmu1) ... Processing triggers for debianutils (5.23.2) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Processing triggers for libc-bin (2.42-13) ... Setting up libcairo2:amd64 (1.18.4-3) ... Setting up python3-cairo (1.27.0-2+b1) ... Setting up python3-rlpycairo (0.3.0-4) ... Setting up python3-reportlab (4.4.10-1) ... Setting up python3-biopython (1.86+dfsg-1+b1) ... Processing triggers for libc-bin (2.42-13) ... 2m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-yf', 'dist-upgrade'] 2m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m50.0s DUMP: 8134cd1a95284b109cd865e473b282ae - 2m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'show', '--no-all-versions', 'busco'] 2m50.2s DUMP: Package: busco Version: 5.5.0-3 Installed-Size: 1236 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, python3-pandas, python3-biopython, hmmer, prodigal, bbmap Description-en: benchmarking sets of universal single-copy orthologs Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO). . * Automated selection of lineages issued from https://www.orthodb.org/ * Automated download of all necessary files and datasets to conduct a run * Use prodigal for non-eukaryotic genomes Description-md5: 40a9b5e0784ce3cc899761f6a14504c5 Homepage: https://gitlab.com/ezlab/busco Section: science Priority: optional Filename: pool/main/b/busco/busco_5.5.0-3_amd64.deb Size: 292828 MD5sum: 73ef7fcb3f81c679deab1c5a6fa45500 SHA256: d8ad9570367965899e264e3179783965bea50571ec803cef4f29ac93779e1acd 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'show', '--no-all-versions', 'busco'] 2m50.2s INFO: apt-cache knows about the following packages: busco 2m50.2s INFO: Running scripts pre_install 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 2m50.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 2m50.3s DUMP: busco: Installed: 5.5.0-3 Candidate: 5.5.0-3 Version table: *** 5.5.0-3 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 2m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 2m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco'] 2m50.7s DUMP: Reading package lists... Building dependency tree... Reading state information... busco is already the newest version (5.5.0-3). Solving dependencies... The following packages were automatically installed and are no longer required: gcc-14-base libgomp1 libnsl2 libperl5.36 libpython3.11-minimal libpython3.11-stdlib libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-autocommand python3-chardet python3-inflect python3-jaraco.context python3-jaraco.functools python3-more-itertools python3-pkg-resources python3-six python3-typeguard python3-typing-extensions python3-tz python3.11 python3.11-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco'] 2m50.7s INFO: Running scripts post_install 2m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 2m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 2m50.7s INFO: Running scripts post_distupgrade 2m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_exceptions'] 2m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_exceptions'] 2m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_zz_backports'] 2m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_zz_backports'] 2m50.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 2m52.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 2m52.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpsevuwvcl to sid 2m52.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 2m52.2s INFO: Running scripts pre_distupgrade 2m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_exceptions'] 2m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_exceptions'] 2m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'update'] 2m56.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [187 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.3 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7490 kB] Fetched 17.9 MB in 3s (5554 kB/s) Reading package lists... 2m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'update'] 2m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-yf', 'dist-upgrade'] 3m9.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gcc-14-base libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libcups2 libdbus-1-3 libgomp1 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnsl2 libperl5.36 libpython3.11-minimal libpython3.11-stdlib libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-autocommand python3-chardet python3-inflect python3-jaraco.context python3-jaraco.functools python3-more-itertools python3-pkg-resources python3-six python3-typeguard python3-typing-extensions python3-tz python3.11 python3.11-minimal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: busco ca-certificates coreutils debconf gcc-12-base gcc-15-base libatomic1 libgcc-s1 libgfortran5 libgomp1 libgpg-error0 liblz4-1 libnss3 libquadmath0 libstdc++6 libsystemd0 libudev1 libx11-6 libx11-data login.defs openjdk-17-jre-headless passwd python3-pil 23 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 55.2 MB of archives. After this operation, 148 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.10-1 [3142 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.92 [123 kB] Get:3 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.19.3-1 [211 kB] Get:4 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.19.3-1 [1288 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 15.2.0-14 [9536 B] Get:6 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-14 [55.0 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 15.2.0-14 [736 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 15.2.0-14 [145 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 15.2.0-14 [140 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 15.2.0-14 [862 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 15.2.0-14 [71.5 kB] Get:12 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.10.0-8 [70.1 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 260~rc1-2 [445 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 260~rc1-2 [131 kB] Get:15 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260223 [158 kB] Get:16 http://deb.debian.org/debian sid/main amd64 busco amd64 5.5.0-4 [292 kB] Get:17 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.5.0-8 [45.2 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.59-2 [89.9 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.121-1 [1428 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:22 http://deb.debian.org/debian sid/main amd64 openjdk-17-jre-headless amd64 17.0.18+8-1 [44.0 MB] Get:23 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 12.1.1-1 [551 kB] Preconfiguring packages ... Fetched 55.2 MB in 2s (32.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18935 files and directories currently installed.) Preparing to unpack .../coreutils_9.10-1_amd64.deb ... Unpacking coreutils (9.10-1) over (9.7-3) ... Setting up coreutils (9.10-1) ... (Reading database ... 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Preparing to unpack .../libgcc-s1_15.2.0-14_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-14) over (15.2.0-13) ... Setting up libgcc-s1:amd64 (15.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18940 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.10.0-8_amd64.deb ... Unpacking liblz4-1:amd64 (1.10.0-8) over (1.10.0-6) ... Setting up liblz4-1:amd64 (1.10.0-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18940 files and directories currently installed.) Preparing to unpack .../libsystemd0_260~rc1-2_amd64.deb ... Unpacking libsystemd0:amd64 (260~rc1-2) over (259.1-1) ... Setting up libsystemd0:amd64 (260~rc1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18940 files and directories currently installed.) Preparing to unpack .../libudev1_260~rc1-2_amd64.deb ... Unpacking libudev1:amd64 (260~rc1-2) over (259.1-1) ... Setting up libudev1:amd64 (260~rc1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18940 files and directories currently installed.) Preparing to unpack .../0-ca-certificates_20260223_all.deb ... Unpacking ca-certificates (20260223) over (20250419) ... Preparing to unpack .../1-busco_5.5.0-4_amd64.deb ... Unpacking busco (5.5.0-4) over (5.5.0-3) ... Preparing to unpack .../2-gcc-12-base_12.5.0-8_amd64.deb ... Unpacking gcc-12-base:amd64 (12.5.0-8) over (12.5.0-7) ... Preparing to unpack .../3-libgpg-error0_1.59-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.59-2) over (1.58-2) ... Preparing to unpack .../4-libnss3_2%3a3.121-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.121-1) over (2:3.120-1) ... Preparing to unpack .../5-libx11-data_2%3a1.8.13-1_all.deb ... Unpacking libx11-data (2:1.8.13-1) over (2:1.8.12-1) ... Preparing to unpack .../6-libx11-6_2%3a1.8.13-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.13-1) over (2:1.8.12-1+b1) ... Preparing to unpack .../7-openjdk-17-jre-headless_17.0.18+8-1_amd64.deb ... Unpacking openjdk-17-jre-headless:amd64 (17.0.18+8-1) over (17.0.17+10-1~deb12u1) ... Preparing to unpack .../8-python3-pil_12.1.1-1_amd64.deb ... Unpacking python3-pil:amd64 (12.1.1-1) over (12.0.0-1+b1) ... Setting up libgpg-error0:amd64 (1.59-2) ... Setting up busco (5.5.0-4) ... /usr/lib/python3/dist-packages/busco/BuscoPlacer.py:211: SyntaxWarning: invalid escape sequence '\[' "[^0-9][0-9]*:[0-9]*[^0-9]{0,1}[0-9]*[^0-9]{0,2}[0-9]*\[%s\]" Setting up libnss3:amd64 (2:3.121-1) ... Setting up libgomp1:amd64 (15.2.0-14) ... Setting up gcc-12-base:amd64 (12.5.0-8) ... Setting up python3-pil:amd64 (12.1.1-1) ... Setting up ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt, it does not contain exactly one certificate or CRL 5 added, 11 removed; done. Setting up libx11-data (2:1.8.13-1) ... Setting up libquadmath0:amd64 (15.2.0-14) ... Setting up libatomic1:amd64 (15.2.0-14) ... Setting up libgfortran5:amd64 (15.2.0-14) ... Setting up openjdk-17-jre-headless:amd64 (17.0.18+8-1) ... Installing new version of config file /etc/java-17-openjdk/jfr/default.jfc ... Installing new version of config file /etc/java-17-openjdk/security/java.security ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Processing triggers for libc-bin (2.42-13) ... Processing triggers for ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 3m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-yf', 'dist-upgrade'] 3m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m10.3s DUMP: f0af946fcdd5d882ade0f2ed7c1c78c8 - 3m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'show', '--no-all-versions', 'busco'] 3m10.5s DUMP: Package: busco Version: 5.5.0-4 Installed-Size: 1235 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: bbmap, hmmer, prodigal, python3-biopython, python3-pandas, python3:any Description-en: benchmarking sets of universal single-copy orthologs Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO). . * Automated selection of lineages issued from https://www.orthodb.org/ * Automated download of all necessary files and datasets to conduct a run * Use prodigal for non-eukaryotic genomes Description-md5: 40a9b5e0784ce3cc899761f6a14504c5 Homepage: https://gitlab.com/ezlab/busco Section: science Priority: optional Filename: pool/main/b/busco/busco_5.5.0-4_amd64.deb Size: 292124 MD5sum: 366ff9c1c98fdd416c55af6e8328c97b SHA256: fa4fb3e673f886c3217c6504a1aeee593e157b23aea82436c0c5b2c88338f43b 3m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'show', '--no-all-versions', 'busco'] 3m10.5s INFO: apt-cache knows about the following packages: busco 3m10.5s INFO: Running scripts pre_install 3m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 3m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 3m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 3m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 3m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 3m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 3m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 3m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 3m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 3m10.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 3m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 3m10.6s DUMP: busco: Installed: 5.5.0-4 Candidate: 5.5.0-4 Version table: *** 5.5.0-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 3m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco'] 3m11.0s DUMP: Reading package lists... Building dependency tree... Reading state information... busco is already the newest version (5.5.0-4). Solving dependencies... The following packages were automatically installed and are no longer required: gcc-14-base libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libcups2 libdbus-1-3 libgomp1 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnsl2 libperl5.36 libpython3.11-minimal libpython3.11-stdlib libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-autocommand python3-chardet python3-inflect python3-jaraco.context python3-jaraco.functools python3-more-itertools python3-pkg-resources python3-six python3-typeguard python3-typing-extensions python3-tz python3.11 python3.11-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco'] 3m11.0s INFO: Running scripts post_install 3m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 3m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 3m11.0s INFO: Running scripts post_distupgrade 3m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_exceptions'] 3m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_exceptions'] 3m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_zz_backports'] 3m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_distupgrade_zz_backports'] 3m11.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 3m12.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 3m12.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 3m14.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 3m14.0s INFO: Running scripts pre_install 3m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 3m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_database-server'] 3m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 3m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_exceptions'] 3m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 3m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_extras'] 3m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 3m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture'] 3m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 3m14.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy'] 3m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 3m14.1s DUMP: busco: Installed: 5.5.0-4 Candidate: 5.5.0-4 Version table: *** 5.5.0-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-cache', 'policy', 'busco'] 3m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco=5.5.0-4'] 3m14.6s DUMP: Reading package lists... Building dependency tree... Reading state information... busco is already the newest version (5.5.0-4). Solving dependencies... The following packages were automatically installed and are no longer required: gcc-14-base libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libcups2 libdbus-1-3 libgomp1 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnsl2 libperl5.36 libpython3.11-minimal libpython3.11-stdlib libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-autocommand python3-chardet python3-inflect python3-jaraco.context python3-jaraco.functools python3-more-itertools python3-pkg-resources python3-six python3-typeguard python3-typing-extensions python3-tz python3.11 python3.11-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', '-y', 'install', 'busco=5.5.0-4'] 3m14.6s INFO: Running scripts post_install 3m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 3m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_install_exceptions'] 3m14.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 3m16.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 3m17.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', '-ac', '--ignore-obsolete'] 3m20.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', '-ac', '--ignore-obsolete'] 3m20.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m20.3s DUMP: 0.15.9~deb12u1 3m20.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m20.3s INFO: Running adequate version 0.15.9~deb12u1 now. 3m20.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'busco'] 3m20.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'busco'] 3m20.4s INFO: Running scripts pre_remove 3m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_exceptions'] 3m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/pre_remove_exceptions'] 3m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m26.2s DUMP: install ok installed adduser adduser 3.154 install ok installed apt apt 3.1.16 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bbmap bbmap 39.20+dfsg-3 install ok installed bsdutils bsdutils 1:2.41.3-4 install ok installed busco busco 5.5.0-4 install ok installed ca-certificates ca-certificates 20260223 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.5 install ok installed e2fsprogs e2fsprogs 1.47.2-3+b8 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed gcc-12-base:amd64 gcc-12-base 12.5.0-8 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-12 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-14 install ok installed gpgv gpgv 2.4.8-5 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hmmer hmmer 3.4+dfsg-3 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed java-common java-common 0.76 install ok installed libabsl20240722:amd64 libabsl20240722 20240722.0-4 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libaom3:amd64 libaom3 3.13.1-2 install ok installed libapache-pom-java libapache-pom-java 33-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.16 install ok installed libasound2:amd64 libasound2 1.2.8-1+b1 install ok installed libasound2-data libasound2-data 1.2.15.3-1 install ok installed libatomic1:amd64 libatomic1 15.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-18 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-18 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-18 install ok installed libavif16:amd64 libavif16 1.3.0-1+b2 install ok installed libblas3:amd64 libblas3 3.12.1-7+b1 install ok installed libblkid1:amd64 libblkid1 2.41.3-4 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b1 install ok installed libc-bin libc-bin 2.42-13 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-13 install ok installed libc6:amd64 libc6 2.42-13 install ok installed libcairo2:amd64 libcairo2 1.18.4-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.1-1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b5 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b8 install ok installed libcommons-cli-java libcommons-cli-java 1.6.0-1 install ok installed libcommons-codec-java libcommons-codec-java 1.18.0-1 install ok installed libcommons-io-java libcommons-io-java 2.19.0-1 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libcups2:amd64 libcups2 2.4.2-3+deb12u9 install ok installed libdav1d7:amd64 libdav1d7 1.5.3-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.16.2-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b2 install ok installed libdeflate0:amd64 libdeflate0 1.23-2+b1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-7 install ok installed libexpat1:amd64 libexpat1 2.7.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-3+b8 install ok installed libffi8:amd64 libffi8 3.5.2-3+b1 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b3 install ok installed libfreetype6:amd64 libfreetype6 2.14.1+dfsg-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5 install ok installed libgav1-2:amd64 libgav1-2 0.20.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.2-3+b1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b1 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-14 deinstall ok config-files libglib2.0-0:amd64 libglib2.0-0 2.74.6-2+deb12u8 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.87.2-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u5 install ok installed libgomp1:amd64 libgomp1 15.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.59-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-11+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4+b1 install ok installed libimagequant0:amd64 libimagequant0 4.4.1-1+b1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b1 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-2 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-2 install ok installed liblapack3:amd64 liblapack3 3.12.1-7+b1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.3-4 install ok installed liblcms2-2:amd64 liblcms2-2 2.17-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5+b1 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-11 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-8 install ok installed liblzma5:amd64 liblzma5 5.8.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.41.3-4 install ok installed libmpj-java libmpj-java 0.44+dfsg-4 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b4 install ok installed libnspr4:amd64 libnspr4 2:4.38.2-1 install ok installed libnss3:amd64 libnss3 2:3.121-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.4-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.2-2 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libpcsclite1:amd64 libpcsclite1 2.4.1-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u3 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-7 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.55-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.9-3 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u6 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u6 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.12-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.12-1 install ok installed libquadmath0:amd64 libquadmath0 15.2.0-14 install ok installed libraqm0:amd64 libraqm0 0.10.4-1 install ok installed librav1e0.8:amd64 librav1e0.8 0.8.1-7 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.9-4+b1 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1+b1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.3-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-9 install ok installed libss2:amd64 libss2 1.47.2-3+b8 install ok installed libssl3t64:amd64 libssl3t64 3.5.5-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-14 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 260~rc1-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2 install ok installed libtiff6:amd64 libtiff6 4.7.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1 install ok installed libudev1:amd64 libudev1 260~rc1-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.3-2+b1 install ok installed libuuid1:amd64 libuuid1 2.41.3-4 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libyuv0:amd64 libyuv0 0.0.1922.20260106-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b1 install ok installed login login 1:4.16.0-2+really2.41.3-4 install ok installed login.defs login.defs 1:4.19.3-1 install ok installed logsave logsave 1.47.2-3+b8 install ok installed mailcap mailcap 3.75 install ok installed mawk mawk 1.3.4.20260129-1 install ok installed media-types media-types 14.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.41.3-4 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed netbase netbase 6.5 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.18+8-1 install ok installed openssl openssl 3.5.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.5-1 install ok installed passwd passwd 1:4.19.3-1 install ok installed perl perl 5.40.1-7 install ok installed perl-base perl-base 5.40.1-7 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u3 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-7 install ok installed prodigal prodigal 1:2.6.3-6 install ok installed python3 python3 3.13.9-3 install ok installed python3-autocommand python3-autocommand 2.2.2-4 install ok installed python3-biopython python3-biopython 1.86+dfsg-1+b1 install ok installed python3-cairo python3-cairo 1.27.0-2+b1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.4-2 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-freetype python3-freetype 2.5.1-2 install ok installed python3-inflect python3-inflect 7.5.0-1 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-2 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-minimal python3-minimal 3.13.9-3 install ok installed python3-more-itertools python3-more-itertools 10.8.0-1 install ok installed python3-numpy python3-numpy 1:2.3.5+ds-3 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.3.5+ds-3 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-3 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-3 install ok installed python3-pil:amd64 python3-pil 12.1.1-1 install ok installed python3-pkg-resources python3-pkg-resources 78.1.1-0.1 install ok installed python3-pytz python3-pytz 2025.2-5 install ok installed python3-reportlab python3-reportlab 4.4.10-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-4 install ok installed python3-six python3-six 1.17.0-2 install ok installed python3-typeguard python3-typeguard 4.4.4-2 install ok installed python3-typing-extensions python3-typing-extensions 4.15.0-2 install ok installed python3-tz python3-tz 2025.2-5 install ok installed python3.11 python3.11 3.11.2-6+deb12u6 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u6 install ok installed python3.13 python3.13 3.13.12-1 install ok installed python3.13-minimal python3.13-minimal 3.13.12-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-2 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed sqv sqv 1.3.0-5 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2025c-3 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41.3-4 install ok installed util-linux-extra util-linux-extra 2.41.3-4 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+26 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-3 3m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'remove', '--allow-remove-essential', 'bbmap', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'hmmer', 'java-common', 'libabsl20240722:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libncursesw6:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopenjp2-7:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'prodigal', 'python3', 'python3-autocommand', 'python3-biopython', 'python3-cairo', 'python3-chardet', 'python3-charset-normalizer', 'python3-dateutil', 'python3-freetype', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pytz', 'python3-reportlab', 'python3-rlpycairo', 'python3-six', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3.11', 'python3.11-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'busco'] 4m10.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libglib2.0-0' is not installed, so not removed Solving dependencies... The following package was automatically installed and is no longer required: gcc-14-base Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: bbmap busco ca-certificates ca-certificates-java fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 hmmer java-common libabsl20240722 libaom3 libapache-pom-java libasound2 libasound2-data libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libblas3 libbrotli1 libcairo2 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdav1d7 libdbus-1-3 libdeflate0 libdivsufsort3 libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 liblog4j1.2-java libmpj-java libncursesw6 libnsl2 libnspr4 libnss3 libopenjp2-7 libpcsclite1 libperl5.36 libperl5.40 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libraqm0 librav1e0.8 libreadline8t64 libsharpyuv0 libsvtav1enc2 libtiff6 libtirpc-common libtirpc3t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libyuv0 mailcap media-types mime-support netbase openjdk-17-jre-headless openssl perl perl-modules-5.36 perl-modules-5.40 prodigal python3 python3-autocommand python3-biopython python3-cairo python3-chardet python3-charset-normalizer python3-dateutil python3-freetype python3-inflect python3-jaraco.context python3-jaraco.functools python3-minimal python3-more-itertools python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-pytz python3-reportlab python3-rlpycairo python3-six python3-typeguard python3-typing-extensions python3-tz python3.11 python3.11-minimal python3.13 python3.13-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 143 to remove and 0 not upgraded. After this operation, 611 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18933 files and directories currently installed.) Removing busco (5.5.0-4) ... Removing bbmap (39.20+dfsg-3) ... Removing openjdk-17-jre-headless:amd64 (17.0.18+8-1) ... Removing ca-certificates-java (20240118) ... Removing ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-biopython (1.86+dfsg-1+b1) ... Removing python3-reportlab (4.4.10-1) ... Removing python3-rlpycairo (0.3.0-4) ... Removing python3-cairo (1.27.0-2+b1) ... Removing libcairo2:amd64 (1.18.4-3) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-extra (2.37-8) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-urw-base35 (20200910-8) ... Removing hmmer (3.4+dfsg-3) ... Removing java-common (0.76) ... Removing python3-pil:amd64 (12.1.1-1) ... Removing libavif16:amd64 (1.3.0-1+b2) ... Removing libgav1-2:amd64 (0.20.0-2) ... Removing libabsl20240722:amd64 (20240722.0-4) ... Removing libaom3:amd64 (3.13.1-2) ... Removing libmpj-java (0.44+dfsg-4) ... Removing libcommons-codec-java (1.18.0-1) ... Removing libcommons-io-java (2.19.0-1) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (33-2) ... Removing libasound2:amd64 (1.2.8-1+b1) ... Removing libasound2-data (1.2.15.3-1) ... Removing libraqm0:amd64 (0.10.4-1) ... Removing libharfbuzz0b:amd64 (12.3.2-2) ... Removing libglib2.0-0t64:amd64 (2.87.2-3) ... Removing libatomic1:amd64 (15.2.0-14) ... Removing libcups2:amd64 (2.4.2-3+deb12u9) ... Removing libavahi-client3:amd64 (0.8-18) ... Removing libavahi-common3:amd64 (0.8-18) ... Removing libavahi-common-data:amd64 (0.8-18) ... Removing python3-pandas (2.3.3+dfsg-3) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... Removing python3-numpy (1:2.3.5+ds-3) ... Removing liblapack3:amd64 (3.12.1-7+b1) ... Removing libblas3:amd64 (3.12.1-7+b1) ... Removing xfonts-utils (1:7.7+7) ... Removing python3-freetype (2.5.1-2) ... Removing libfreetype6:amd64 (2.14.1+dfsg-2) ... Removing libbrotli1:amd64 (1.2.0-3) ... Removing libcommons-cli-java (1.6.0-1) ... Removing libdav1d7:amd64 (1.5.3-1+b1) ... Removing libdbus-1-3:amd64 (1.16.2-4) ... Removing libtiff6:amd64 (4.7.1-1) ... Removing libdeflate0:amd64 (1.23-2+b1) ... Removing libdivsufsort3:amd64 (2.0.1-7) ... Removing python3.11 (3.11.2-6+deb12u6) ... Removing python3.11-minimal (3.11.2-6+deb12u6) ... Removing python3-charset-normalizer (3.4.4-2) ... Removing python3-six (1.17.0-2) ... Removing libfontenc1:amd64 (1:1.1.8-1+b3) ... Removing libfribidi0:amd64 (1.0.16-5) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ... Removing mime-support (3.66) ... Removing mailcap (3.75) ... Removing perl (5.40.1-7) ... Removing libperl5.40:amd64 (5.40.1-7) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u3) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b1) ... Removing libgdbm6t64:amd64 (1.26-1+b1) ... Removing libgfortran5:amd64 (15.2.0-14) ... Removing libgomp1:amd64 (15.2.0-14) ... Removing libgraphite2-3:amd64 (1.3.14-11+b1) ... Removing libnsl2:amd64 (1.3.0-3+b4) ... Removing libtirpc3t64:amd64 (1.3.6+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.22.1-2) ... Removing libimagequant0:amd64 (4.4.1-1+b1) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libyuv0:amd64 (0.0.1922.20260106-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing libkrb5-3:amd64 (1.22.1-2) ... Removing libk5crypto3:amd64 (1.22.1-2) ... Removing libkeyutils1:amd64 (1.6.3-6+b1) ... Removing libkrb5support0:amd64 (1.22.1-2) ... Removing liblcms2-2:amd64 (2.17-1) ... Removing liblerc4:amd64 (4.0.0+ds-5+b1) ... Removing liblog4j1.2-java (1.2.17-11) ... Removing libnss3:amd64 (2:3.121-1) ... Removing libnspr4:amd64 (2:4.38.2-1) ... Removing libopenjp2-7:amd64 (2.5.4-1) ... Removing libpcsclite1:amd64 (2.4.1-1) ... Removing libpixman-1-0:amd64 (0.46.4-1+b1) ... Removing libpng16-16t64:amd64 (1.6.55-1) ... Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ... Removing libquadmath0:amd64 (15.2.0-14) ... Removing librav1e0.8:amd64 (0.8.1-7) ... Removing libwebpmux3:amd64 (1.5.0-0.1+b1) ... Removing libwebpdemux2:amd64 (1.5.0-0.1+b1) ... Removing libwebp7:amd64 (1.5.0-0.1+b1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1+b1) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libtirpc-common (1.3.6+ds-1) ... Removing libxrender1:amd64 (1:0.9.12-1+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b1) ... Removing libxdmcp6:amd64 (1:1.1.5-2) ... Removing openssl (3.5.5-1) ... Removing perl-modules-5.36 (5.36.0-7+deb12u3) ... Removing perl-modules-5.40 (5.40.1-7) ... Removing prodigal (1:2.6.3-6) ... Removing python3-pkg-resources (78.1.1-0.1) ... Removing python3-autocommand (2.2.2-4) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-inflect (7.5.0-1) ... Removing python3-jaraco.context (6.0.1-2) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.8.0-1) ... Removing python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... Removing python3-tz (2025.2-5) ... Removing python3-pytz (2025.2-5) ... Removing python3-typeguard (4.4.4-2) ... Removing python3-typing-extensions (4.15.0-2) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31+nmu1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing python3 (3.13.9-3) ... Removing python3.13 (3.13.12-1) ... Removing libpython3-stdlib:amd64 (3.13.9-3) ... Removing libpython3.13-stdlib:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.6+20251231-1) ... Removing python3-minimal (3.13.9-3) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.3-4) ... Removing python3.13-minimal (3.13.12-1) ... Removing libexpat1:amd64 (2.7.4-1) ... Removing libpython3.13-minimal:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Processing triggers for libc-bin (2.42-13) ... 4m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'remove', '--allow-remove-essential', 'bbmap', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'hmmer', 'java-common', 'libabsl20240722:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libncursesw6:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopenjp2-7:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'prodigal', 'python3', 'python3-autocommand', 'python3-biopython', 'python3-cairo', 'python3-chardet', 'python3-charset-normalizer', 'python3-dateutil', 'python3-freetype', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pytz', 'python3-reportlab', 'python3-rlpycairo', 'python3-six', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3.11', 'python3.11-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'busco'] 4m10.3s INFO: Running scripts post_remove 4m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_remove_exceptions'] 4m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_remove_exceptions'] 4m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg', '--purge', 'bbmap', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'hmmer', 'java-common', 'libabsl20240722:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libncursesw6:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopenjp2-7:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'prodigal', 'python3', 'python3-autocommand', 'python3-biopython', 'python3-cairo', 'python3-chardet', 'python3-charset-normalizer', 'python3-dateutil', 'python3-freetype', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pytz', 'python3-reportlab', 'python3-rlpycairo', 'python3-six', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3.11', 'python3.11-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 4m10.9s DUMP: dpkg: warning: ignoring request to remove bbmap which is not installed (Reading database ... 5542 files and directories currently installed.) Purging configuration files for ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which is not installed Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove hmmer which is not installed Purging configuration files for java-common (0.76) ... dpkg: warning: ignoring request to remove libabsl20240722 which is not installed dpkg: warning: ignoring request to remove libaom3 which is not installed dpkg: warning: ignoring request to remove libapache-pom-java which is not installed dpkg: warning: ignoring request to remove libasound2 which is not installed dpkg: warning: ignoring request to remove libasound2-data which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libavahi-client3 which is not installed dpkg: warning: ignoring request to remove libavahi-common-data which is not installed dpkg: warning: ignoring request to remove libavahi-common3 which is not installed dpkg: warning: ignoring request to remove libavif16 which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcommons-cli-java which is not installed dpkg: warning: ignoring request to remove libcommons-codec-java which is not installed dpkg: warning: ignoring request to remove libcommons-io-java which is not installed dpkg: warning: ignoring request to remove libcommons-parent-java which is not installed dpkg: warning: ignoring request to remove libcups2 which is not installed dpkg: warning: ignoring request to remove libdav1d7 which is not installed dpkg: warning: ignoring request to remove libdbus-1-3 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libdivsufsort3 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfontenc1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgav1-2 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.87.2-3) ... dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-2) ... dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libimagequant0 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblcms2-2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove liblog4j1.2-java which is not installed Purging configuration files for libmpj-java (0.44+dfsg-4) ... dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnsl2 which is not installed dpkg: warning: ignoring request to remove libnspr4 which is not installed dpkg: warning: ignoring request to remove libnss3 which is not installed dpkg: warning: ignoring request to remove libopenjp2-7 which is not installed dpkg: warning: ignoring request to remove libpcsclite1 which is not installed dpkg: warning: ignoring request to remove libperl5.36 which is not installed dpkg: warning: ignoring request to remove libperl5.40 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which is not installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.12-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed dpkg: warning: ignoring request to remove libraqm0 which is not installed dpkg: warning: ignoring request to remove librav1e0.8 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsvtav1enc2 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed Purging configuration files for libtirpc-common (1.3.6+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libwebpdemux2 which is not installed dpkg: warning: ignoring request to remove libwebpmux3 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libyuv0 which is not installed Purging configuration files for mailcap (3.75) ... Purging configuration files for media-types (14.0.0) ... dpkg: warning: ignoring request to remove mime-support which is not installed Purging configuration files for netbase (6.5) ... Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.18+8-1) ... Purging configuration files for openssl (3.5.5-1) ... Purging configuration files for perl (5.40.1-7) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which is not installed dpkg: warning: ignoring request to remove perl-modules-5.40 which is not installed dpkg: warning: ignoring request to remove prodigal which is not installed Purging configuration files for python3 (3.13.9-3) ... dpkg: warning: ignoring request to remove python3-autocommand which is not installed dpkg: warning: ignoring request to remove python3-biopython which is not installed dpkg: warning: ignoring request to remove python3-cairo which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-freetype which is not installed dpkg: warning: ignoring request to remove python3-inflect which is not installed dpkg: warning: ignoring request to remove python3-jaraco.context which is not installed dpkg: warning: ignoring request to remove python3-jaraco.functools which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-more-itertools which is not installed Purging configuration files for python3-numpy (1:2.3.5+ds-3) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-pil which is not installed dpkg: warning: ignoring request to remove python3-pkg-resources which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-reportlab which is not installed dpkg: warning: ignoring request to remove python3-rlpycairo which is not installed dpkg: warning: ignoring request to remove python3-six which is not installed dpkg: warning: ignoring request to remove python3-typeguard which is not installed dpkg: warning: ignoring request to remove python3-typing-extensions which is not installed dpkg: warning: ignoring request to remove python3-tz which is not installed dpkg: warning: ignoring request to remove python3.11 which is not installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u6) ... dpkg: warning: ignoring request to remove python3.13 which is not installed Purging configuration files for python3.13-minimal (3.13.12-1) ... Purging configuration files for readline-common (8.3-4) ... Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xfonts-encodings which is not installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... 4m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg', '--purge', 'bbmap', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'hmmer', 'java-common', 'libabsl20240722:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libncursesw6:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopenjp2-7:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'prodigal', 'python3', 'python3-autocommand', 'python3-biopython', 'python3-cairo', 'python3-chardet', 'python3-charset-normalizer', 'python3-dateutil', 'python3-freetype', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pytz', 'python3-reportlab', 'python3-rlpycairo', 'python3-six', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3.11', 'python3.11-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 4m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg', '--purge', 'busco'] 4m10.9s DUMP: dpkg: warning: ignoring request to remove busco which is not installed 4m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg', '--purge', 'busco'] 4m10.9s INFO: Running scripts post_purge 4m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_purge_exceptions'] 4m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_purge_exceptions'] 4m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg', '--purge', '--pending'] 4m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg', '--purge', '--pending'] 4m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg', '--remove', '--pending'] 4m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg', '--remove', '--pending'] 4m10.9s INFO: Running scripts post_test 4m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_test_exceptions'] 4m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'tmp/scripts/post_test_exceptions'] 4m10.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 4m11.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 4m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg-divert', '--list'] 4m11.4s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 4m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'dpkg-divert', '--list'] 4m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'clean'] 4m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl', 'apt-get', 'clean'] 4m11.5s DEBUG: Recording chroot state 4m12.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/shm'] 4m12.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/shm'] 4m12.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/console'] 4m12.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/console'] 4m12.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/ptmx'] 4m12.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/ptmx'] 4m12.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/pts'] 4m12.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/dev/pts'] 4m12.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/proc'] 4m12.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl/proc'] 4m12.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 4m13.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpsevuwvcl'] 4m13.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpsevuwvcl 4m13.0s INFO: PASS: Upgrading between Debian distributions. 4m13.0s INFO: PASS: All tests. 4m13.0s INFO: piuparts run ends. ret=0 End: 2026-02-28 00:10:16 GMT