Start: 2024-12-16 21:17:53 GMT

[oldstable]
Package: ipig
Version: 0.0.r5-4
Installed-Size: 186
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libcommons-compress-java, libcommons-net-java, libjdom1-java, libxerces2-java
Description: integrating PSMs into genome browser visualisations
Homepage: http://sourceforge.net/projects/ipig/
Description-md5: e7fed74addfdd4f7e012d77bd745b91e
Section: science
Priority: optional
Filename: pool/main/i/ipig/ipig_0.0.r5-4_amd64.deb
Size: 164788
MD5sum: e9ee31362fd4663d585ed5bc5dac3549
SHA256: 21022630f92813bb170d9f7637ac903b9338f0691f2463d503932fd2b08d7c6d

[stable]
Package: ipig
Version: 0.0.r5-4
Installed-Size: 186
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libcommons-compress-java, libcommons-net-java, libjdom1-java, libxerces2-java
Description: integrating PSMs into genome browser visualisations
Homepage: http://sourceforge.net/projects/ipig/
Description-md5: e7fed74addfdd4f7e012d77bd745b91e
Section: science
Priority: optional
Filename: pool/main/i/ipig/ipig_0.0.r5-4_amd64.deb
Size: 164788
MD5sum: e9ee31362fd4663d585ed5bc5dac3549
SHA256: 21022630f92813bb170d9f7637ac903b9338f0691f2463d503932fd2b08d7c6d

[testing]
Package: ipig
Version: 0.0.r5-4
Installed-Size: 186
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libcommons-compress-java, libcommons-net-java, libjdom1-java, libxerces2-java
Description: integrating PSMs into genome browser visualisations
Homepage: http://sourceforge.net/projects/ipig/
Description-md5: e7fed74addfdd4f7e012d77bd745b91e
Section: science
Priority: optional
Filename: pool/main/i/ipig/ipig_0.0.r5-4_amd64.deb
Size: 164788
MD5sum: e9ee31362fd4663d585ed5bc5dac3549
SHA256: 21022630f92813bb170d9f7637ac903b9338f0691f2463d503932fd2b08d7c6d

[sid]
Package: ipig
Version: 0.0.r5-5
Installed-Size: 189
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libcommons-compress-java, libcommons-net-java, libjdom1-java, libxerces2-java
Description: integrating PSMs into genome browser visualisations
Homepage: http://sourceforge.net/projects/ipig/
Description-md5: e7fed74addfdd4f7e012d77bd745b91e
Section: science
Priority: optional
Filename: pool/main/i/ipig/ipig_0.0.r5-5_amd64.deb
Size: 168288
MD5sum: 6d8e943ca543be4374c4f1f25c267d03
SHA256: 3297a7a0d57d3f4d93f45f9148812b0f36ecdae2c41047b2ec5b5de384949288

Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt ipig=0.0.r5-5
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt ipig=0.0.r5-5
0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmphq_xe4bm
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmphq_xe4bm
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz']
0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz']
0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/proc']
0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/proc']
0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/pts']
0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/pts']
0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/ptmx']
0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/ptmx']
0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/console']
0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/console']
0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/shm']
0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/shm']
0m0.3s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ bullseye main
0m0.3s DEBUG: Created policy-rc.d and chmodded it.
0m0.3s DEBUG: Created resolv.conf.
0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmphq_xe4bm/tmp/scripts/
0m0.3s INFO: Running scripts post_chroot_unpack
0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'update']
0m0.8s DUMP: 
  Hit:1 http://deb.debian.org/debian bullseye InRelease
  Reading package lists...
0m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'update']
0m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-yf', 'dist-upgrade']
0m1.0s DUMP: 
  Reading package lists...
  Building dependency tree...
  Calculating upgrade...
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-yf', 'dist-upgrade']
0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m1.1s DUMP: 
  f58ca9ba0b3223edf5b7797c101a5448  -
0m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m1.1s INFO: Running scripts post_setup
0m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_dummy_users']
0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_dummy_users']
0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_forbid_home']
0m1.7s DUMP: 
  Disabling /home
  Adding 'local diversion of /home to /home.distrib'
0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_forbid_home']
0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_force-unsafe-io']
0m1.7s DUMP: 
  Enabling dpkg --force-unsafe-io.
  Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
  Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
  '/bin/sync' -> 'true'
0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_force-unsafe-io']
0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_minimize']
0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_minimize']
0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_squeeze-backports']
0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_squeeze-backports']
0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_zz_backports']
0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_setup_zz_backports']
0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m1.7s DUMP: 
  install ok installed	adduser	adduser	3.118+deb11u1
  install ok installed	apt	apt	2.2.4
  install ok installed	base-files	base-files	11.1+deb11u11
  install ok installed	base-passwd	base-passwd	3.5.51
  install ok installed	bash	bash	5.1-2+deb11u1
  install ok installed	bsdutils	bsdutils	1:2.36.1-8+deb11u2
  install ok installed	coreutils	coreutils	8.32-4+b1
  install ok installed	dash	dash	0.5.11+git20200708+dd9ef66-5
  install ok installed	debconf	debconf	1.5.77
  install ok installed	debian-archive-keyring	debian-archive-keyring	2021.1.1+deb11u1
  install ok installed	debianutils	debianutils	4.11.2
  install ok installed	diffutils	diffutils	1:3.7-5
  install ok installed	dpkg	dpkg	1.20.13
  install ok installed	e2fsprogs	e2fsprogs	1.46.2-2
  install ok installed	findutils	findutils	4.8.0-1
  install ok installed	gcc-10-base:amd64	gcc-10-base	10.2.1-6
  install ok installed	gcc-9-base:amd64	gcc-9-base	9.3.0-22
  install ok installed	gpgv	gpgv	2.2.27-2+deb11u2
  install ok installed	grep	grep	3.6-1+deb11u1
  install ok installed	gzip	gzip	1.10-4+deb11u1
  install ok installed	hostname	hostname	3.23
  install ok installed	init-system-helpers	init-system-helpers	1.60
  install ok installed	libacl1:amd64	libacl1	2.2.53-10
  install ok installed	libapt-pkg6.0:amd64	libapt-pkg6.0	2.2.4
  install ok installed	libattr1:amd64	libattr1	1:2.4.48-6
  install ok installed	libaudit-common	libaudit-common	1:3.0-2
  install ok installed	libaudit1:amd64	libaudit1	1:3.0-2
  install ok installed	libblkid1:amd64	libblkid1	2.36.1-8+deb11u2
  install ok installed	libbz2-1.0:amd64	libbz2-1.0	1.0.8-4
  install ok installed	libc-bin	libc-bin	2.31-13+deb11u11
  install ok installed	libc6:amd64	libc6	2.31-13+deb11u11
  install ok installed	libcap-ng0:amd64	libcap-ng0	0.7.9-2.2+b1
  install ok installed	libcom-err2:amd64	libcom-err2	1.46.2-2
  install ok installed	libcrypt1:amd64	libcrypt1	1:4.4.18-4
  install ok installed	libdb5.3:amd64	libdb5.3	5.3.28+dfsg1-0.8
  install ok installed	libdebconfclient0:amd64	libdebconfclient0	0.260
  install ok installed	libext2fs2:amd64	libext2fs2	1.46.2-2
  install ok installed	libffi7:amd64	libffi7	3.3-6
  install ok installed	libgcc-s1:amd64	libgcc-s1	10.2.1-6
  install ok installed	libgcrypt20:amd64	libgcrypt20	1.8.7-6
  install ok installed	libgmp10:amd64	libgmp10	2:6.2.1+dfsg-1+deb11u1
  install ok installed	libgnutls30:amd64	libgnutls30	3.7.1-5+deb11u5
  install ok installed	libgpg-error0:amd64	libgpg-error0	1.38-2
  install ok installed	libgssapi-krb5-2:amd64	libgssapi-krb5-2	1.18.3-6+deb11u5
  install ok installed	libhogweed6:amd64	libhogweed6	3.7.3-1
  install ok installed	libidn2-0:amd64	libidn2-0	2.3.0-5
  install ok installed	libk5crypto3:amd64	libk5crypto3	1.18.3-6+deb11u5
  install ok installed	libkeyutils1:amd64	libkeyutils1	1.6.1-2
  install ok installed	libkrb5-3:amd64	libkrb5-3	1.18.3-6+deb11u5
  install ok installed	libkrb5support0:amd64	libkrb5support0	1.18.3-6+deb11u5
  install ok installed	liblz4-1:amd64	liblz4-1	1.9.3-2
  install ok installed	liblzma5:amd64	liblzma5	5.2.5-2.1~deb11u1
  install ok installed	libmount1:amd64	libmount1	2.36.1-8+deb11u2
  install ok installed	libnettle8:amd64	libnettle8	3.7.3-1
  install ok installed	libnsl2:amd64	libnsl2	1.3.0-2
  install ok installed	libp11-kit0:amd64	libp11-kit0	0.23.22-1
  install ok installed	libpam-modules:amd64	libpam-modules	1.4.0-9+deb11u1
  install ok installed	libpam-modules-bin	libpam-modules-bin	1.4.0-9+deb11u1
  install ok installed	libpam-runtime	libpam-runtime	1.4.0-9+deb11u1
  install ok installed	libpam0g:amd64	libpam0g	1.4.0-9+deb11u1
  install ok installed	libpcre2-8-0:amd64	libpcre2-8-0	10.36-2+deb11u1
  install ok installed	libpcre3:amd64	libpcre3	2:8.39-13
  install ok installed	libseccomp2:amd64	libseccomp2	2.5.1-1+deb11u1
  install ok installed	libselinux1:amd64	libselinux1	3.1-3
  install ok installed	libsemanage-common	libsemanage-common	3.1-1
  install ok installed	libsemanage1:amd64	libsemanage1	3.1-1+b2
  install ok installed	libsepol1:amd64	libsepol1	3.1-1
  install ok installed	libsmartcols1:amd64	libsmartcols1	2.36.1-8+deb11u2
  install ok installed	libss2:amd64	libss2	1.46.2-2
  install ok installed	libssl1.1:amd64	libssl1.1	1.1.1w-0+deb11u1
  install ok installed	libstdc++6:amd64	libstdc++6	10.2.1-6
  install ok installed	libsystemd0:amd64	libsystemd0	247.3-7+deb11u5
  install ok installed	libtasn1-6:amd64	libtasn1-6	4.16.0-2+deb11u1
  install ok installed	libtinfo6:amd64	libtinfo6	6.2+20201114-2+deb11u2
  install ok installed	libtirpc-common	libtirpc-common	1.3.1-1+deb11u1
  install ok installed	libtirpc3:amd64	libtirpc3	1.3.1-1+deb11u1
  install ok installed	libudev1:amd64	libudev1	247.3-7+deb11u5
  install ok installed	libunistring2:amd64	libunistring2	0.9.10-4
  install ok installed	libuuid1:amd64	libuuid1	2.36.1-8+deb11u2
  install ok installed	libxxhash0:amd64	libxxhash0	0.8.0-2
  install ok installed	libzstd1:amd64	libzstd1	1.4.8+dfsg-2.1
  install ok installed	login	login	1:4.8.1-1
  install ok installed	logsave	logsave	1.46.2-2
  install ok installed	lsb-base	lsb-base	11.1.0
  install ok installed	mawk	mawk	1.3.4.20200120-2
  install ok installed	mount	mount	2.36.1-8+deb11u2
  install ok installed	ncurses-base	ncurses-base	6.2+20201114-2+deb11u2
  install ok installed	ncurses-bin	ncurses-bin	6.2+20201114-2+deb11u2
  install ok installed	passwd	passwd	1:4.8.1-1
  install ok installed	perl-base	perl-base	5.32.1-4+deb11u3
  install ok installed	sed	sed	4.7-1
  install ok installed	sysvinit-utils	sysvinit-utils	2.96-7+deb11u1
  install ok installed	tar	tar	1.34+dfsg-1+deb11u1
  install ok installed	tzdata	tzdata	2024a-0+deb11u1
  install ok installed	util-linux	util-linux	2.36.1-8+deb11u2
  install ok installed	zlib1g:amd64	zlib1g	1:1.2.11.dfsg-2+deb11u2
0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m1.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat
0m1.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m2.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m2.0s INFO: Running scripts is_testable
0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/is_testable_uninstallable']
0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/is_testable_uninstallable']
0m2.0s INFO: Running scripts pre_test
0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_test_exceptions']
0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_test_exceptions']
0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_test_root_password']
0m2.0s DUMP: 
  New password: Retype new password: passwd: password updated successfully
0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_test_root_password']
0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'show', '--no-all-versions', 'ipig']
0m2.1s DUMP: 
  Package: ipig
  Version: 0.0.r5-4
  Installed-Size: 186
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libcommons-compress-java, libcommons-net-java, libjdom1-java, libxerces2-java
  Description-en: integrating PSMs into genome browser visualisations
   iPiG targets the integration of peptide spectrum matches (PSMs) from
   mass spectrometry (MS) peptide identifications into genomic
   visualisations provided by genome browser such as the UCSC genome
   browser (http://genome.ucsc.edu/).
   .
   iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in
   text format and provides results in genome track formats (BED and GFF3
   files), which can be easily imported into genome browsers.
  Description-md5: e7fed74addfdd4f7e012d77bd745b91e
  Homepage: http://sourceforge.net/projects/ipig/
  Section: science
  Priority: optional
  Filename: pool/main/i/ipig/ipig_0.0.r5-4_amd64.deb
  Size: 164788
  MD5sum: e9ee31362fd4663d585ed5bc5dac3549
  SHA256: 21022630f92813bb170d9f7637ac903b9338f0691f2463d503932fd2b08d7c6d
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'show', '--no-all-versions', 'ipig']
0m2.1s INFO: apt-cache knows about the following packages: ipig
0m2.1s INFO: Running scripts pre_install
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m2.1s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian bullseye/main amd64 Packages
       release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m2.1s DUMP: 
  ipig:
    Installed: (none)
    Candidate: 0.0.r5-4
    Version table:
       0.0.r5-4 500
          500 http://deb.debian.org/debian bullseye/main amd64 Packages
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig']
0m3.8s DUMP: 
  Reading package lists...
  Building dependency tree...
  The following additional packages will be installed:
    libapache-pom-java libcommons-compress-java libcommons-net-java
    libcommons-parent-java libjaxen-java libjdom1-java libxerces2-java
    libxml-commons-external-java libxml-commons-resolver1.1-java
  Suggested packages:
    libxz-java libcommons-net-java-doc libdom4j-java libxom-java
    libjdom1-java-doc libxerces2-java-doc libxml-commons-resolver1.1-java-doc
  The following NEW packages will be installed:
    ipig libapache-pom-java libcommons-compress-java libcommons-net-java
    libcommons-parent-java libjaxen-java libjdom1-java libxerces2-java
    libxml-commons-external-java libxml-commons-resolver1.1-java
  0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
  Need to get 3188 kB of archives.
  After this operation, 3923 kB of additional disk space will be used.
  Get:1 http://deb.debian.org/debian bullseye/main amd64 libapache-pom-java all 18-1 [4676 B]
  Get:2 http://deb.debian.org/debian bullseye/main amd64 libcommons-parent-java all 43-1 [10.8 kB]
  Get:3 http://deb.debian.org/debian bullseye/main amd64 libcommons-compress-java all 1.20-1 [574 kB]
  Get:4 http://deb.debian.org/debian bullseye/main amd64 libcommons-net-java all 3.6-1+deb11u1 [284 kB]
  Get:5 http://deb.debian.org/debian bullseye/main amd64 libjaxen-java all 1.1.6-4 [214 kB]
  Get:6 http://deb.debian.org/debian bullseye/main amd64 libjdom1-java all 1.1.3-2.1 [156 kB]
  Get:7 http://deb.debian.org/debian bullseye/main amd64 libxml-commons-external-java all 1.4.01-5 [240 kB]
  Get:8 http://deb.debian.org/debian bullseye/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB]
  Get:9 http://deb.debian.org/debian bullseye/main amd64 libxerces2-java all 2.12.1-1 [1440 kB]
  Get:10 http://deb.debian.org/debian bullseye/main amd64 ipig amd64 0.0.r5-4 [165 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 3188 kB in 1s (3544 kB/s)
  Selecting previously unselected package libapache-pom-java.
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 6674 files and directories currently installed.)
  Preparing to unpack .../0-libapache-pom-java_18-1_all.deb ...
  Unpacking libapache-pom-java (18-1) ...
  Selecting previously unselected package libcommons-parent-java.
  Preparing to unpack .../1-libcommons-parent-java_43-1_all.deb ...
  Unpacking libcommons-parent-java (43-1) ...
  Selecting previously unselected package libcommons-compress-java.
  Preparing to unpack .../2-libcommons-compress-java_1.20-1_all.deb ...
  Unpacking libcommons-compress-java (1.20-1) ...
  Selecting previously unselected package libcommons-net-java.
  Preparing to unpack .../3-libcommons-net-java_3.6-1+deb11u1_all.deb ...
  Unpacking libcommons-net-java (3.6-1+deb11u1) ...
  Selecting previously unselected package libjaxen-java.
  Preparing to unpack .../4-libjaxen-java_1.1.6-4_all.deb ...
  Unpacking libjaxen-java (1.1.6-4) ...
  Selecting previously unselected package libjdom1-java.
  Preparing to unpack .../5-libjdom1-java_1.1.3-2.1_all.deb ...
  Unpacking libjdom1-java (1.1.3-2.1) ...
  Selecting previously unselected package libxml-commons-external-java.
  Preparing to unpack .../6-libxml-commons-external-java_1.4.01-5_all.deb ...
  Unpacking libxml-commons-external-java (1.4.01-5) ...
  Selecting previously unselected package libxml-commons-resolver1.1-java.
  Preparing to unpack .../7-libxml-commons-resolver1.1-java_1.2-11_all.deb ...
  Unpacking libxml-commons-resolver1.1-java (1.2-11) ...
  Selecting previously unselected package libxerces2-java.
  Preparing to unpack .../8-libxerces2-java_2.12.1-1_all.deb ...
  Unpacking libxerces2-java (2.12.1-1) ...
  Selecting previously unselected package ipig.
  Preparing to unpack .../9-ipig_0.0.r5-4_amd64.deb ...
  Unpacking ipig (0.0.r5-4) ...
  Setting up libcommons-net-java (3.6-1+deb11u1) ...
  Setting up libjaxen-java (1.1.6-4) ...
  Setting up libapache-pom-java (18-1) ...
  Setting up libxml-commons-resolver1.1-java (1.2-11) ...
  Setting up libxml-commons-external-java (1.4.01-5) ...
  Setting up libxerces2-java (2.12.1-1) ...
  Setting up libjdom1-java (1.1.3-2.1) ...
  Setting up libcommons-parent-java (43-1) ...
  Setting up libcommons-compress-java (1.20-1) ...
  Setting up ipig (0.0.r5-4) ...
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig']
0m3.8s INFO: Running scripts post_install
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m4.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmphq_xe4bm to stable
0m4.1s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ bookworm main
0m4.1s INFO: Running scripts pre_distupgrade
0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_exceptions']
0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_exceptions']
0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'update']
0m5.9s DUMP: 
  Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB]
  Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8789 kB]
  Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB]
  Fetched 15.0 MB in 1s (11.1 MB/s)
  Reading package lists...
0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'update']
0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-yf', 'dist-upgrade']
0m13.5s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Calculating upgrade...
  The following packages will be REMOVED:
    libsemanage1
  The following NEW packages will be installed:
    gcc-12-base libcap2 libffi8 libfile-find-rule-perl libgdbm-compat4 libgdbm6
    libmd0 libnumber-compare-perl libperl5.36 libsemanage2 libsepol2 libssl3
    libtext-glob-perl perl perl-modules-5.36 usrmerge util-linux-extra
  The following packages will be upgraded:
    adduser apt base-files base-passwd bash bsdutils coreutils dash debconf
    debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gpgv
    grep gzip hostname init-system-helpers libacl1 libapache-pom-java
    libapt-pkg6.0 libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0
    libc-bin libc6 libcap-ng0 libcom-err2 libcommons-compress-java
    libcommons-net-java libcommons-parent-java libcrypt1 libdb5.3
    libdebconfclient0 libext2fs2 libgcc-s1 libgcrypt20 libgmp10 libgnutls30
    libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libjdom1-java
    libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5
    libmount1 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin
    libpam-runtime libpam0g libpcre2-8-0 libpcre3 libseccomp2 libselinux1
    libsemanage-common libsmartcols1 libss2 libstdc++6 libsystemd0 libtasn1-6
    libtinfo6 libtirpc-common libtirpc3 libudev1 libunistring2 libuuid1
    libxerces2-java libxxhash0 libzstd1 login logsave lsb-base mawk mount
    ncurses-base ncurses-bin passwd perl-base sed sysvinit-utils tar tzdata
    util-linux zlib1g
  95 upgraded, 17 newly installed, 1 to remove and 0 not upgraded.
  Need to get 44.9 MB of archives.
  After this operation, 55.7 MB of additional disk space will be used.
  Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u8 [70.9 kB]
  Get:2 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u9 [2757 kB]
  Get:3 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u9 [608 kB]
  Get:4 http://deb.debian.org/debian bookworm/main amd64 gcc-12-base amd64 12.2.0-14 [37.5 kB]
  Get:5 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 12.2.0-14 [49.9 kB]
  Get:6 http://deb.debian.org/debian bookworm/main amd64 debianutils amd64 5.7-0.5~deb12u1 [103 kB]
  Get:7 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.2.15-2+b7 [1490 kB]
  Get:8 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-5+deb12u2 [94.5 kB]
  Get:9 http://deb.debian.org/debian bookworm/main amd64 libgmp10 amd64 2:6.2.1+dfsg1-1.1 [563 kB]
  Get:10 http://deb.debian.org/debian bookworm/main amd64 coreutils amd64 9.1-1 [2897 kB]
  Get:11 http://deb.debian.org/debian bookworm/main amd64 liblzma5 amd64 5.4.1-0.2 [205 kB]
  Get:12 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB]
  Get:13 http://deb.debian.org/debian bookworm/main amd64 libzstd1 amd64 1.5.4+dfsg2-5 [290 kB]
  Get:14 http://deb.debian.org/debian bookworm/main amd64 tar amd64 1.34+dfsg-1.2+deb12u1 [836 kB]
  Get:15 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.22 [1567 kB]
  Get:16 http://deb.debian.org/debian bookworm/main amd64 dash amd64 0.5.12-2 [91.8 kB]
  Get:17 http://deb.debian.org/debian bookworm/main amd64 diffutils amd64 1:3.8-4 [352 kB]
  Get:18 http://deb.debian.org/debian bookworm/main amd64 findutils amd64 4.9.0-4 [636 kB]
  Get:19 http://deb.debian.org/debian bookworm/main amd64 grep amd64 3.8-5 [421 kB]
  Get:20 http://deb.debian.org/debian bookworm/main amd64 gzip amd64 1.12-1 [140 kB]
  Get:21 http://deb.debian.org/debian bookworm/main amd64 hostname amd64 3.23+nmu1 [10.5 kB]
  Get:22 http://deb.debian.org/debian bookworm/main amd64 login amd64 1:4.13+dfsg1-1+b1 [616 kB]
  Get:23 http://deb.debian.org/debian bookworm/main amd64 libtinfo6 amd64 6.4-4 [331 kB]
  Get:24 http://deb.debian.org/debian bookworm/main amd64 ncurses-bin amd64 6.4-4 [421 kB]
  Get:25 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.36.0-7+deb12u1 [1608 kB]
  Get:26 http://deb.debian.org/debian bookworm/main amd64 sed amd64 4.9-1 [329 kB]
  Get:27 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-5+deb12u2 [147 kB]
  Get:28 http://deb.debian.org/debian bookworm/main amd64 libpcre2-8-0 amd64 10.42-1 [261 kB]
  Get:29 http://deb.debian.org/debian bookworm/main amd64 libselinux1 amd64 3.4-1+b6 [73.7 kB]
  Get:30 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-5+deb12u2 [165 kB]
  Get:31 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-5+deb12u2 [107 kB]
  Get:32 http://deb.debian.org/debian bookworm/main amd64 libaudit-common all 1:3.0.9-1 [10.4 kB]
  Get:33 http://deb.debian.org/debian bookworm/main amd64 libcap-ng0 amd64 0.8.3-1+b3 [17.1 kB]
  Get:34 http://deb.debian.org/debian bookworm/main amd64 libaudit1 amd64 1:3.0.9-1 [46.8 kB]
  Get:35 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-5+deb12u2 [111 kB]
  Get:36 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-5+deb12u2 [1176 kB]
  Get:37 http://deb.debian.org/debian bookworm/main amd64 libgpg-error0 amd64 1.46-1 [76.9 kB]
  Get:38 http://deb.debian.org/debian bookworm/main amd64 libgcrypt20 amd64 1.10.1-3 [696 kB]
  Get:39 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 12.2.0-14 [614 kB]
  Get:40 http://deb.debian.org/debian bookworm/main amd64 libbz2-1.0 amd64 1.0.8-5+b1 [47.3 kB]
  Get:41 http://deb.debian.org/debian bookworm/main amd64 liblz4-1 amd64 1.9.4-1 [62.9 kB]
  Get:42 http://deb.debian.org/debian bookworm/main amd64 libcap2 amd64 1:2.66-4 [27.0 kB]
  Get:43 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.31-1~deb12u1 [332 kB]
  Get:44 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.31-1~deb12u1 [109 kB]
  Get:45 http://deb.debian.org/debian bookworm/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB]
  Get:46 http://deb.debian.org/debian bookworm/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB]
  Get:47 http://deb.debian.org/debian bookworm/main amd64 libapt-pkg6.0 amd64 2.6.1 [907 kB]
  Get:48 http://deb.debian.org/debian bookworm/main amd64 libnettle8 amd64 3.8.1-2 [288 kB]
  Get:49 http://deb.debian.org/debian bookworm/main amd64 libhogweed6 amd64 3.8.1-2 [328 kB]
  Get:50 http://deb.debian.org/debian bookworm/main amd64 libunistring2 amd64 1.0-2 [437 kB]
  Get:51 http://deb.debian.org/debian bookworm/main amd64 libidn2-0 amd64 2.3.3-1+b1 [124 kB]
  Get:52 http://deb.debian.org/debian bookworm/main amd64 libffi8 amd64 3.4.4-1 [22.9 kB]
  Get:53 http://deb.debian.org/debian bookworm/main amd64 libp11-kit0 amd64 0.24.1-2 [345 kB]
  Get:54 http://deb.debian.org/debian bookworm/main amd64 libtasn1-6 amd64 4.19.0-2 [56.6 kB]
  Get:55 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u3 [1405 kB]
  Get:56 http://deb.debian.org/debian bookworm/main amd64 libsemanage-common all 3.4-1 [21.6 kB]
  Get:57 http://deb.debian.org/debian bookworm/main amd64 libsepol2 amd64 3.4-2.1 [276 kB]
  Get:58 http://deb.debian.org/debian bookworm/main amd64 libsemanage2 amd64 3.4-1+b5 [89.9 kB]
  Get:59 http://deb.debian.org/debian bookworm/main amd64 passwd amd64 1:4.13+dfsg1-1+b1 [972 kB]
  Get:60 http://deb.debian.org/debian bookworm/main amd64 debconf all 1.5.82 [121 kB]
  Get:61 http://deb.debian.org/debian bookworm/main amd64 libpam0g amd64 1.5.2-6+deb12u1 [92.0 kB]
  Get:62 http://deb.debian.org/debian bookworm/main amd64 libcrypt1 amd64 1:4.4.33-2 [89.5 kB]
  Get:63 http://deb.debian.org/debian bookworm/main amd64 libpam-modules-bin amd64 1.5.2-6+deb12u1 [75.6 kB]
  Get:64 http://deb.debian.org/debian bookworm/main amd64 libpam-modules amd64 1.5.2-6+deb12u1 [291 kB]
  Get:65 http://deb.debian.org/debian bookworm/main amd64 adduser all 3.134 [183 kB]
  Get:66 http://deb.debian.org/debian bookworm/main amd64 gpgv amd64 2.2.40-1.1 [648 kB]
  Get:67 http://deb.debian.org/debian bookworm/main amd64 debian-archive-keyring all 2023.3+deb12u1 [161 kB]
  Get:68 http://deb.debian.org/debian bookworm/main amd64 libseccomp2 amd64 2.5.4-1+deb12u1 [46.8 kB]
  Get:69 http://deb.debian.org/debian bookworm/main amd64 apt amd64 2.6.1 [1373 kB]
  Get:70 http://deb.debian.org/debian bookworm/main amd64 libdebconfclient0 amd64 0.270 [9900 B]
  Get:71 http://deb.debian.org/debian bookworm/main amd64 base-passwd amd64 3.6.1 [60.0 kB]
  Get:72 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB]
  Get:73 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB]
  Get:74 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB]
  Get:75 http://deb.debian.org/debian bookworm/main amd64 libdb5.3 amd64 5.3.28+dfsg2-1 [697 kB]
  Get:76 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB]
  Get:77 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB]
  Get:78 http://deb.debian.org/debian bookworm/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
  Get:79 http://deb.debian.org/debian bookworm/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
  Get:80 http://deb.debian.org/debian bookworm/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB]
  Get:81 http://deb.debian.org/debian bookworm/main amd64 usrmerge all 37~deb12u1 [13.3 kB]
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  Get:83 http://deb.debian.org/debian bookworm/main amd64 ncurses-base all 6.4-4 [261 kB]
  Get:84 http://deb.debian.org/debian bookworm/main amd64 sysvinit-utils amd64 3.06-4 [31.0 kB]
  Get:85 http://deb.debian.org/debian bookworm/main amd64 lsb-base all 11.6 [4584 B]
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  Get:89 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-5+deb12u2 [134 kB]
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  Get:95 http://deb.debian.org/debian bookworm/main amd64 mawk amd64 1.3.4.20200120-3.1 [119 kB]
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  Get:99 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB]
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  Get:102 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB]
  Get:103 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB]
  Get:104 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB]
  Get:105 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB]
  Get:106 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B]
  Get:107 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.15-1~deb12u1 [2025 kB]
  Get:108 http://deb.debian.org/debian bookworm/main amd64 libjdom1-java all 1.1.3-3 [155 kB]
  Get:109 http://deb.debian.org/debian bookworm/main amd64 libss2 amd64 1.47.0-2 [24.5 kB]
  Get:110 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB]
  Get:111 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB]
  Get:112 http://deb.debian.org/debian bookworm/main amd64 libxerces2-java all 2.12.2-1 [1440 kB]
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  Unpacking libtirpc3:amd64 (1.3.3+ds-1) over (1.3.1-1+deb11u1) ...
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  Unpacking libxerces2-java (2.12.2-1) over (2.12.1-1) ...
  Setting up lsb-base (11.6) ...
  Setting up libkeyutils1:amd64 (1.6.3-2) ...
  Setting up libcommons-net-java (3.9.0-1) ...
  Setting up libjdom1-java (1.1.3-3) ...
  Setting up libtirpc-common (1.3.3+ds-1) ...
  Setting up libssl3:amd64 (3.0.15-1~deb12u1) ...
  Setting up libcom-err2:amd64 (1.47.0-2) ...
  Setting up libkrb5support0:amd64 (1.20.1-2+deb12u2) ...
  Setting up tzdata (2024a-0+deb12u1) ...
  
  Current default time zone: 'Etc/UTC'
  Local time is now:      Mon Dec 16 21:18:06 UTC 2024.
  Universal Time is now:  Mon Dec 16 21:18:06 UTC 2024.
  Run 'dpkg-reconfigure tzdata' if you wish to change it.
  
  Setting up libapache-pom-java (29-2) ...
  Setting up libss2:amd64 (1.47.0-2) ...
  Setting up util-linux (2.38.1-5+deb12u2) ...
  Setting up libk5crypto3:amd64 (1.20.1-2+deb12u2) ...
  Setting up logsave (1.47.0-2) ...
  Setting up mount (2.38.1-5+deb12u2) ...
  Setting up mawk (1.3.4.20200120-3.1) ...
  Setting up libkrb5-3:amd64 (1.20.1-2+deb12u2) ...
  Setting up libxerces2-java (2.12.2-1) ...
  Setting up libcommons-parent-java (56-1) ...
  Setting up e2fsprogs (1.47.0-2) ...
  Installing new version of config file /etc/mke2fs.conf ...
  Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ...
  Setting up libtirpc3:amd64 (1.3.3+ds-1) ...
  Setting up libcommons-compress-java (1.22-1) ...
  Processing triggers for debianutils (5.7-0.5~deb12u1) ...
  Processing triggers for libc-bin (2.36-9+deb12u9) ...
0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-yf', 'dist-upgrade']
0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m14.0s DUMP: 
  9667be4591f2cce307f0cd9e8fe66190  -
0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'show', '--no-all-versions', 'ipig']
0m14.1s DUMP: 
  Package: ipig
  Version: 0.0.r5-4
  Installed-Size: 186
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libcommons-compress-java, libcommons-net-java, libjdom1-java, libxerces2-java
  Description-en: integrating PSMs into genome browser visualisations
   iPiG targets the integration of peptide spectrum matches (PSMs) from
   mass spectrometry (MS) peptide identifications into genomic
   visualisations provided by genome browser such as the UCSC genome
   browser (http://genome.ucsc.edu/).
   .
   iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in
   text format and provides results in genome track formats (BED and GFF3
   files), which can be easily imported into genome browsers.
  Description-md5: e7fed74addfdd4f7e012d77bd745b91e
  Homepage: http://sourceforge.net/projects/ipig/
  Section: science
  Priority: optional
  Filename: pool/main/i/ipig/ipig_0.0.r5-4_amd64.deb
  Size: 164788
  MD5sum: e9ee31362fd4663d585ed5bc5dac3549
  SHA256: 21022630f92813bb170d9f7637ac903b9338f0691f2463d503932fd2b08d7c6d
0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'show', '--no-all-versions', 'ipig']
0m14.1s INFO: apt-cache knows about the following packages: ipig
0m14.1s INFO: Running scripts pre_install
0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m14.1s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian bookworm/main amd64 Packages
       release v=12.8,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m14.1s DUMP: 
  ipig:
    Installed: 0.0.r5-4
    Candidate: 0.0.r5-4
    Version table:
   *** 0.0.r5-4 500
          500 http://deb.debian.org/debian bookworm/main amd64 Packages
          100 /var/lib/dpkg/status
0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig']
0m14.3s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  ipig is already the newest version (0.0.r5-4).
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig']
0m14.3s INFO: Running scripts post_install
0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m14.3s INFO: Running scripts post_distupgrade
0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_base_cleanup']
0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_base_cleanup']
0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_exceptions']
0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_exceptions']
0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_zz_backports']
0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_zz_backports']
0m14.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m14.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m14.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmphq_xe4bm to testing
0m14.6s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ trixie main
0m14.6s INFO: Running scripts pre_distupgrade
0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_exceptions']
0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_exceptions']
0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'update']
0m16.2s DUMP: 
  Get:1 http://deb.debian.org/debian trixie InRelease [172 kB]
  Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9354 kB]
  Get:3 http://deb.debian.org/debian trixie/main Translation-en [6278 kB]
  Fetched 15.8 MB in 1s (14.3 MB/s)
  Reading package lists...
0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'update']
0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-yf', 'dist-upgrade']
0m24.1s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Calculating upgrade...
  The following packages were automatically installed and are no longer required:
    gcc-12-base libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  The following packages will be REMOVED:
    libapt-pkg6.0 libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libgnutls30
    libhogweed6 libnettle8 libssl3 libtirpc3
  The following NEW packages will be installed:
    gcc-14-base libapt-pkg6.0t64 libbsd0 libcommons-codec-java
    libcommons-io-java libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64
    libgnutls30t64 libhogweed6t64 libnettle8t64 libperl5.40 libssl3t64
    libtirpc3t64 libunistring5 login.defs openssl-provider-legacy
    perl-modules-5.40
  The following packages will be upgraded:
    adduser apt base-files base-passwd bash bsdutils coreutils dash debconf
    debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils
    gcc-12-base gpgv grep gzip hostname init-system-helpers libacl1
    libapache-pom-java libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0
    libc-bin libc6 libcap-ng0 libcap2 libcom-err2 libcommons-compress-java
    libcrypt1 libdebconfclient0 libffi8 libgcc-s1 libgcrypt20 libgmp10
    libgpg-error0 libgssapi-krb5-2 libidn2-0 libjaxen-java libk5crypto3
    libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmd0 libmount1
    libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime
    libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common
    libsemanage2 libsepol2 libsmartcols1 libss2 libstdc++6 libsystemd0
    libtasn1-6 libtinfo6 libtirpc-common libudev1 libuuid1
    libxml-commons-external-java libxxhash0 libzstd1 login logsave mawk mount
    ncurses-base ncurses-bin passwd perl perl-base sed sysvinit-utils tar tzdata
    usrmerge util-linux util-linux-extra zlib1g
  93 upgraded, 19 newly installed, 10 to remove and 0 not upgraded.
  Need to get 45.8 MB of archives.
  After this operation, 58.8 MB of additional disk space will be used.
  Get:1 http://deb.debian.org/debian trixie/main amd64 base-files amd64 13.6 [72.8 kB]
  Get:2 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.40-4 [2804 kB]
  Get:3 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.40-4 [626 kB]
  Get:4 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-8 [47.2 kB]
  Get:5 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-8 [72.7 kB]
  Get:6 http://deb.debian.org/debian trixie/main amd64 debianutils amd64 5.21 [92.1 kB]
  Get:7 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.37-1 [1501 kB]
  Get:8 http://deb.debian.org/debian trixie/main amd64 libcap2 amd64 1:2.66-5+b1 [27.8 kB]
  Get:9 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257-2 [448 kB]
  Get:10 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.40.2-12 [106 kB]
  Get:11 http://deb.debian.org/debian trixie/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB]
  Get:12 http://deb.debian.org/debian trixie/main amd64 libzstd1 amd64 1.5.6+dfsg-1+b1 [300 kB]
  Get:13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB]
  Get:14 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB]
  Get:15 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB]
  Get:16 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB]
  Get:17 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB]
  Get:18 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
  Get:19 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.3.2-2 [2271 kB]
  Get:20 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.3.2-2 [298 kB]
  Get:21 http://deb.debian.org/debian trixie/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB]
  Get:22 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.0-8 [267 kB]
  Get:23 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.0-8 [3015 kB]
  Get:24 http://deb.debian.org/debian trixie/main amd64 libpam-modules-bin amd64 1.5.3-7+b1 [54.1 kB]
  Get:25 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB]
  Get:26 http://deb.debian.org/debian trixie/main amd64 libpam-modules amd64 1.5.3-7+b1 [267 kB]
  Get:27 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB]
  Get:28 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB]
  Get:29 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.0-8 [4320 kB]
  Get:30 http://deb.debian.org/debian trixie/main amd64 perl-base amd64 5.40.0-8 [1675 kB]
  Get:31 http://deb.debian.org/debian trixie/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB]
  Get:32 http://deb.debian.org/debian trixie/main amd64 libcap-ng0 amd64 0.8.5-4 [17.3 kB]
  Get:33 http://deb.debian.org/debian trixie/main amd64 libaudit1 amd64 1:4.0.2-2 [54.9 kB]
  Get:34 http://deb.debian.org/debian trixie/main amd64 libcrypt1 amd64 1:4.4.36-5 [89.8 kB]
  Get:35 http://deb.debian.org/debian trixie/main amd64 debconf all 1.5.87 [119 kB]
  Get:36 http://deb.debian.org/debian trixie/main amd64 libpam0g amd64 1.5.3-7+b1 [68.3 kB]
  Get:37 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.44-5 [275 kB]
  Get:38 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.7-3+b1 [77.0 kB]
  Get:39 http://deb.debian.org/debian trixie/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB]
  Get:40 http://deb.debian.org/debian trixie/main amd64 usrmerge all 39 [13.1 kB]
  Get:41 http://deb.debian.org/debian trixie/main amd64 coreutils amd64 9.5-1+b1 [2922 kB]
  Get:42 http://deb.debian.org/debian trixie/main amd64 dash amd64 0.5.12-9 [93.2 kB]
  Get:43 http://deb.debian.org/debian trixie/main amd64 diffutils amd64 1:3.10-1 [375 kB]
  Get:44 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-2 [82.1 kB]
  Get:45 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-6 [843 kB]
  Get:46 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-8 [714 kB]
  Get:47 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.10-1+b1 [305 kB]
  Get:48 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.10-1+b1 [335 kB]
  Get:49 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-2+b1 [429 kB]
  Get:50 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
  Get:51 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB]
  Get:52 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB]
  Get:53 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
  Get:54 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB]
  Get:55 http://deb.debian.org/debian trixie/main amd64 libxxhash0 amd64 0.8.2-2+b2 [26.6 kB]
  Get:56 http://deb.debian.org/debian trixie/main amd64 liblz4-1 amd64 1.9.4-3+b1 [60.3 kB]
  Get:57 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.6.3-1+b1 [272 kB]
  Get:58 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257-2 [147 kB]
  Get:59 http://deb.debian.org/debian trixie/main amd64 libapt-pkg6.0t64 amd64 2.9.16 [1113 kB]
  Get:60 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.16 [1397 kB]
  Get:61 http://deb.debian.org/debian trixie/main amd64 tar amd64 1.35+dfsg-3 [813 kB]
  Get:62 http://deb.debian.org/debian trixie/main amd64 dpkg amd64 1.22.11 [1531 kB]
  Get:63 http://deb.debian.org/debian trixie/main amd64 findutils amd64 4.10.0-3 [700 kB]
  Get:64 http://deb.debian.org/debian trixie/main amd64 grep amd64 3.11-4 [431 kB]
  Get:65 http://deb.debian.org/debian trixie/main amd64 gzip amd64 1.12-1.2 [134 kB]
  Get:66 http://deb.debian.org/debian trixie/main amd64 hostname amd64 3.25 [11.0 kB]
  Get:67 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.16.0-7 [185 kB]
  Get:68 http://deb.debian.org/debian trixie/main amd64 libpam-runtime all 1.5.3-7 [140 kB]
  Get:69 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.40.2-12 [81.8 kB]
  Get:70 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5-2+b1 [344 kB]
  Get:71 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5-2+b1 [434 kB]
  Get:72 http://deb.debian.org/debian trixie/main amd64 sed amd64 4.9-2 [329 kB]
  Get:73 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.40.2-12 [168 kB]
  Get:74 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.40.2-12 [199 kB]
  Get:75 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.40.2-12 [139 kB]
  Get:76 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.40.2-12 [36.0 kB]
  Get:77 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.40.2-12 [1209 kB]
  Get:78 http://deb.debian.org/debian trixie/main amd64 util-linux-extra amd64 2.40.2-12 [265 kB]
  Get:79 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.274 [10.1 kB]
  Get:80 http://deb.debian.org/debian trixie/main amd64 base-passwd amd64 3.6.5 [53.1 kB]
  Get:81 http://deb.debian.org/debian trixie/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB]
  Get:82 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-2 [131 kB]
  Get:83 http://deb.debian.org/debian trixie/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB]
  Get:84 http://deb.debian.org/debian trixie/main amd64 libattr1 amd64 1:2.5.2-2 [22.7 kB]
  Get:85 http://deb.debian.org/debian trixie/main amd64 libsemanage-common all 3.7-2 [7108 B]
  Get:86 http://deb.debian.org/debian trixie/main amd64 libsepol2 amd64 3.7-1 [293 kB]
  Get:87 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.7-2+b1 [91.2 kB]
  Get:88 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.16.0-7 [1233 kB]
  Get:89 http://deb.debian.org/debian trixie/main amd64 adduser all 3.137 [140 kB]
  Get:90 http://deb.debian.org/debian trixie/main amd64 gpgv amd64 2.2.45-2 [219 kB]
  Get:91 http://deb.debian.org/debian trixie/main amd64 debian-archive-keyring all 2023.4 [161 kB]
  Get:92 http://deb.debian.org/debian trixie/main amd64 libseccomp2 amd64 2.5.5-2 [47.8 kB]
  Get:93 http://deb.debian.org/debian trixie/main amd64 init-system-helpers all 1.67 [38.7 kB]
  Get:94 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5-2 [270 kB]
  Get:95 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.11-1 [33.1 kB]
  Get:96 http://deb.debian.org/debian trixie/main amd64 logsave amd64 1.47.2~rc1-2 [23.6 kB]
  Get:97 http://deb.debian.org/debian trixie/main amd64 libext2fs2t64 amd64 1.47.2~rc1-2 [211 kB]
  Get:98 http://deb.debian.org/debian trixie/main amd64 e2fsprogs amd64 1.47.2~rc1-2 [588 kB]
  Get:99 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
  Get:100 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB]
  Get:101 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
  Get:102 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.40.2-12 [155 kB]
  Get:103 http://deb.debian.org/debian trixie/main amd64 mawk amd64 1.3.4.20240905-1 [138 kB]
  Get:104 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB]
  Get:105 http://deb.debian.org/debian trixie/main amd64 gcc-12-base amd64 12.4.0-2 [42.9 kB]
  Get:106 http://deb.debian.org/debian trixie/main amd64 libapache-pom-java all 33-2 [5852 B]
  Get:107 http://deb.debian.org/debian trixie/main amd64 libcommons-codec-java all 1.17.1-1 [303 kB]
  Get:108 http://deb.debian.org/debian trixie/main amd64 libcommons-io-java all 2.17.0-1 [488 kB]
  Get:109 http://deb.debian.org/debian trixie/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB]
  Get:110 http://deb.debian.org/debian trixie/main amd64 libjaxen-java all 1.1.6-5 [214 kB]
  Get:111 http://deb.debian.org/debian trixie/main amd64 libss2 amd64 1.47.2~rc1-2 [28.4 kB]
  Get:112 http://deb.debian.org/debian trixie/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 45.8 MB in 0s (177 MB/s)
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  Preparing to unpack .../base-files_13.6_amd64.deb ...
  Unpacking base-files (13.6) over (12.4+deb12u8) ...
  Setting up base-files (13.6) ...
  Installing new version of config file /etc/debian_version ...
  Installing new version of config file /etc/issue ...
  Installing new version of config file /etc/issue.net ...
  Updating /etc/profile to current default.
  Updating /root/.profile to current default.
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  dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty
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  Setting up sysvinit-utils (3.11-1) ...
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  Preparing to unpack .../logsave_1.47.2~rc1-2_amd64.deb ...
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  dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested:
   e2fsprogs depends on libext2fs2 (= 1.47.0-2).
  
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  Removing libext2fs2:amd64 (1.47.0-2) ...
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  Preparing to unpack .../libext2fs2t64_1.47.2~rc1-2_amd64.deb ...
  Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64'
  Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
  Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64'
  Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
  Unpacking libext2fs2t64:amd64 (1.47.2~rc1-2) ...
  Setting up libcom-err2:amd64 (1.47.2~rc1-2) ...
  Setting up libext2fs2t64:amd64 (1.47.2~rc1-2) ...
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  Preparing to unpack .../e2fsprogs_1.47.2~rc1-2_amd64.deb ...
  Unpacking e2fsprogs (1.47.2~rc1-2) over (1.47.0-2) ...
  dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty
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  Unpacking libtirpc-common (1.3.4+ds-1.3) over (1.3.3+ds-1) ...
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  Removing libtirpc3:amd64 (1.3.3+ds-1) ...
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  Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ...
  Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
  Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
  Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
  Preparing to unpack .../01-mount_2.40.2-12_amd64.deb ...
  Unpacking mount (2.40.2-12) over (2.38.1-5+deb12u2) ...
  Preparing to unpack .../02-mawk_1.3.4.20240905-1_amd64.deb ...
  Unpacking mawk (1.3.4.20240905-1) over (1.3.4.20200120-3.1) ...
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  Unpacking tzdata (2024b-4) over (2024a-0+deb12u1) ...
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  Unpacking libapache-pom-java (33-2) over (29-2) ...
  Selecting previously unselected package libcommons-codec-java.
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  Unpacking libcommons-codec-java (1.17.1-1) ...
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  Unpacking libjaxen-java (1.1.6-5) over (1.1.6-4) ...
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  Unpacking libss2:amd64 (1.47.2~rc1-2) over (1.47.0-2) ...
  Preparing to unpack .../11-libxml-commons-external-java_1.4.01-6_all.deb ...
  Unpacking libxml-commons-external-java (1.4.01-6) over (1.4.01-5) ...
  Setting up libkeyutils1:amd64 (1.6.3-4) ...
  Setting up libcommons-io-java (2.17.0-1) ...
  Setting up libtirpc-common (1.3.4+ds-1.3) ...
  Setting up libkrb5support0:amd64 (1.21.3-3) ...
  Setting up gcc-12-base:amd64 (12.4.0-2) ...
  Setting up tzdata (2024b-4) ...
  
  Current default time zone: 'Etc/UTC'
  Local time is now:      Mon Dec 16 21:18:17 UTC 2024.
  Universal Time is now:  Mon Dec 16 21:18:17 UTC 2024.
  Run 'dpkg-reconfigure tzdata' if you wish to change it.
  
  Setting up libjaxen-java (1.1.6-5) ...
  Setting up libapache-pom-java (33-2) ...
  Setting up libss2:amd64 (1.47.2~rc1-2) ...
  Setting up libk5crypto3:amd64 (1.21.3-3) ...
  Setting up logsave (1.47.2~rc1-2) ...
  Setting up mount (2.40.2-12) ...
  Setting up libxml-commons-external-java (1.4.01-6) ...
  Setting up mawk (1.3.4.20240905-1) ...
  Setting up libkrb5-3:amd64 (1.21.3-3) ...
  Setting up libcommons-codec-java (1.17.1-1) ...
  Setting up libcommons-compress-java (1.27.1-2) ...
  Setting up e2fsprogs (1.47.2~rc1-2) ...
  Installing new version of config file /etc/cron.d/e2scrub_all ...
  Installing new version of config file /etc/mke2fs.conf ...
  Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ...
  Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
  Setting up libnsl2:amd64 (1.3.0-3+b3) ...
  Processing triggers for libc-bin (2.40-4) ...
  Processing triggers for debianutils (5.21) ...
0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-yf', 'dist-upgrade']
0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m24.6s DUMP: 
  bfb371deb6bfd18dd78dddb847446604  -
0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'show', '--no-all-versions', 'ipig']
0m24.7s DUMP: 
  Package: ipig
  Version: 0.0.r5-4
  Installed-Size: 186
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libcommons-compress-java, libcommons-net-java, libjdom1-java, libxerces2-java
  Description-en: integrating PSMs into genome browser visualisations
   iPiG targets the integration of peptide spectrum matches (PSMs) from
   mass spectrometry (MS) peptide identifications into genomic
   visualisations provided by genome browser such as the UCSC genome
   browser (http://genome.ucsc.edu/).
   .
   iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in
   text format and provides results in genome track formats (BED and GFF3
   files), which can be easily imported into genome browsers.
  Description-md5: e7fed74addfdd4f7e012d77bd745b91e
  Homepage: http://sourceforge.net/projects/ipig/
  Section: science
  Priority: optional
  Filename: pool/main/i/ipig/ipig_0.0.r5-4_amd64.deb
  Size: 164788
  MD5sum: e9ee31362fd4663d585ed5bc5dac3549
  SHA256: 21022630f92813bb170d9f7637ac903b9338f0691f2463d503932fd2b08d7c6d
0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'show', '--no-all-versions', 'ipig']
0m24.7s INFO: apt-cache knows about the following packages: ipig
0m24.7s INFO: Running scripts pre_install
0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m24.8s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian trixie/main amd64 Packages
       release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m24.8s DUMP: 
  ipig:
    Installed: 0.0.r5-4
    Candidate: 0.0.r5-4
    Version table:
   *** 0.0.r5-4 500
          500 http://deb.debian.org/debian trixie/main amd64 Packages
          100 /var/lib/dpkg/status
0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig']
0m25.0s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  ipig is already the newest version (0.0.r5-4).
  The following packages were automatically installed and are no longer required:
    gcc-12-base libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig']
0m25.0s INFO: Running scripts post_install
0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m25.0s INFO: Running scripts post_distupgrade
0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_base_cleanup']
0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_base_cleanup']
0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_exceptions']
0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_exceptions']
0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_zz_backports']
0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_zz_backports']
0m25.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m25.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m25.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmphq_xe4bm to sid
0m25.4s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ sid main
0m25.4s INFO: Running scripts pre_distupgrade
0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_exceptions']
0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_exceptions']
0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'update']
0m27.3s DUMP: 
  Get:1 http://deb.debian.org/debian sid InRelease [202 kB]
  Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB]
  Get:3 http://deb.debian.org/debian sid/main Translation-en [7352 kB]
  Fetched 17.6 MB in 1s (12.1 MB/s)
  Reading package lists...
0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'update']
0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-yf', 'dist-upgrade']
0m28.5s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Calculating upgrade...
  The following packages were automatically installed and are no longer required:
    gcc-12-base libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  The following packages will be upgraded:
    apt ipig libapt-pkg6.0t64 libpcre3
  4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
  Need to get 2996 kB of archives.
  After this operation, 50.2 kB disk space will be freed.
  Get:1 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.17 [1113 kB]
  Get:2 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.17 [1368 kB]
  Get:3 http://deb.debian.org/debian sid/main amd64 ipig amd64 0.0.r5-5 [168 kB]
  Get:4 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15.1 [346 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 2996 kB in 0s (59.4 MB/s)
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
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  (Reading database ... 45%
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  (Reading database ... 60%
  (Reading database ... 65%
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  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 9706 files and directories currently installed.)
  Preparing to unpack .../libapt-pkg6.0t64_2.9.17_amd64.deb ...
  Unpacking libapt-pkg6.0t64:amd64 (2.9.17) over (2.9.16) ...
  Setting up libapt-pkg6.0t64:amd64 (2.9.17) ...
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
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  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 9706 files and directories currently installed.)
  Preparing to unpack .../archives/apt_2.9.17_amd64.deb ...
  Unpacking apt (2.9.17) over (2.9.16) ...
  Setting up apt (2.9.17) ...
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 9700 files and directories currently installed.)
  Preparing to unpack .../ipig_0.0.r5-5_amd64.deb ...
  Unpacking ipig (0.0.r5-5) over (0.0.r5-4) ...
  Preparing to unpack .../libpcre3_2%3a8.39-15.1_amd64.deb ...
  Unpacking libpcre3:amd64 (2:8.39-15.1) over (2:8.39-15) ...
  Setting up ipig (0.0.r5-5) ...
  Setting up libpcre3:amd64 (2:8.39-15.1) ...
  Processing triggers for libc-bin (2.40-4) ...
0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-yf', 'dist-upgrade']
0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m29.1s DUMP: 
  d51cbde8587cde37b80db1f5af7afdf2  -
0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'show', '--no-all-versions', 'ipig']
0m29.2s DUMP: 
  Package: ipig
  Version: 0.0.r5-5
  Installed-Size: 189
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libcommons-compress-java, libcommons-net-java, libjdom1-java, libxerces2-java
  Description-en: integrating PSMs into genome browser visualisations
   iPiG targets the integration of peptide spectrum matches (PSMs) from
   mass spectrometry (MS) peptide identifications into genomic
   visualisations provided by genome browser such as the UCSC genome
   browser (http://genome.ucsc.edu/).
   .
   iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in
   text format and provides results in genome track formats (BED and GFF3
   files), which can be easily imported into genome browsers.
  Description-md5: e7fed74addfdd4f7e012d77bd745b91e
  Homepage: http://sourceforge.net/projects/ipig/
  Section: science
  Priority: optional
  Filename: pool/main/i/ipig/ipig_0.0.r5-5_amd64.deb
  Size: 168288
  MD5sum: 6d8e943ca543be4374c4f1f25c267d03
  SHA256: 3297a7a0d57d3f4d93f45f9148812b0f36ecdae2c41047b2ec5b5de384949288
0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'show', '--no-all-versions', 'ipig']
0m29.2s INFO: apt-cache knows about the following packages: ipig
0m29.2s INFO: Running scripts pre_install
0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m29.2s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian sid/main amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m29.3s DUMP: 
  ipig:
    Installed: 0.0.r5-5
    Candidate: 0.0.r5-5
    Version table:
   *** 0.0.r5-5 500
          500 http://deb.debian.org/debian sid/main amd64 Packages
          100 /var/lib/dpkg/status
0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig']
0m29.5s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  ipig is already the newest version (0.0.r5-5).
  The following packages were automatically installed and are no longer required:
    gcc-12-base libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig']
0m29.5s INFO: Running scripts post_install
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m29.5s INFO: Running scripts post_distupgrade
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_base_cleanup']
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_base_cleanup']
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_exceptions']
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_exceptions']
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_zz_backports']
0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_distupgrade_zz_backports']
0m29.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m29.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m29.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m30.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m30.4s INFO: Running scripts pre_install
0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_database-server']
0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_exceptions']
0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_extras']
0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture']
0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m30.4s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian sid/main amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy']
0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m30.5s DUMP: 
  ipig:
    Installed: 0.0.r5-5
    Candidate: 0.0.r5-5
    Version table:
   *** 0.0.r5-5 500
          500 http://deb.debian.org/debian sid/main amd64 Packages
          100 /var/lib/dpkg/status
0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-cache', 'policy', 'ipig']
0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig=0.0.r5-5']
0m30.7s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  ipig is already the newest version (0.0.r5-5).
  The following packages were automatically installed and are no longer required:
    gcc-12-base libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', '-y', 'install', 'ipig=0.0.r5-5']
0m30.7s INFO: Running scripts post_install
0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_install_exceptions']
0m30.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m31.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m31.1s INFO: /lib converted to /usr/lib by /usr merge
0m31.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge
0m31.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', '-ac', '--ignore-obsolete']
0m32.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', '-ac', '--ignore-obsolete']
0m32.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m32.1s DUMP: 
  0.15.6
0m32.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m32.1s INFO: Running adequate version 0.15.6 now.
0m32.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'ipig']
0m32.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'ipig']
0m32.2s INFO: Running scripts pre_remove
0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_exceptions']
0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/pre_remove_exceptions']
0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m32.8s DUMP: 
  install ok installed	adduser	adduser	3.137
  install ok installed	apt	apt	2.9.17
  install ok installed	base-files	base-files	13.6
  install ok installed	base-passwd	base-passwd	3.6.5
  install ok installed	bash	bash	5.2.37-1
  install ok installed	bsdutils	bsdutils	1:2.40.2-12
  install ok installed	coreutils	coreutils	9.5-1+b1
  install ok installed	dash	dash	0.5.12-9
  install ok installed	debconf	debconf	1.5.87
  install ok installed	debian-archive-keyring	debian-archive-keyring	2023.4
  install ok installed	debianutils	debianutils	5.21
  install ok installed	diffutils	diffutils	1:3.10-1
  install ok installed	dpkg	dpkg	1.22.11
  install ok installed	e2fsprogs	e2fsprogs	1.47.2~rc1-2
  install ok installed	findutils	findutils	4.10.0-3
  install ok installed	gcc-10-base:amd64	gcc-10-base	10.2.1-6
  install ok installed	gcc-12-base:amd64	gcc-12-base	12.4.0-2
  install ok installed	gcc-14-base:amd64	gcc-14-base	14.2.0-8
  install ok installed	gcc-9-base:amd64	gcc-9-base	9.3.0-22
  install ok installed	gpgv	gpgv	2.2.45-2
  install ok installed	grep	grep	3.11-4
  install ok installed	gzip	gzip	1.12-1.2
  install ok installed	hostname	hostname	3.25
  install ok installed	init-system-helpers	init-system-helpers	1.67
  install ok installed	ipig	ipig	0.0.r5-5
  install ok installed	libacl1:amd64	libacl1	2.3.2-2+b1
  install ok installed	libapache-pom-java	libapache-pom-java	33-2
  install ok installed	libapt-pkg6.0t64:amd64	libapt-pkg6.0t64	2.9.17
  install ok installed	libattr1:amd64	libattr1	1:2.5.2-2
  install ok installed	libaudit-common	libaudit-common	1:4.0.2-2
  install ok installed	libaudit1:amd64	libaudit1	1:4.0.2-2
  install ok installed	libblkid1:amd64	libblkid1	2.40.2-12
  install ok installed	libbsd0:amd64	libbsd0	0.12.2-2
  install ok installed	libbz2-1.0:amd64	libbz2-1.0	1.0.8-6
  install ok installed	libc-bin	libc-bin	2.40-4
  install ok installed	libc6:amd64	libc6	2.40-4
  install ok installed	libcap-ng0:amd64	libcap-ng0	0.8.5-4
  install ok installed	libcap2:amd64	libcap2	1:2.66-5+b1
  install ok installed	libcom-err2:amd64	libcom-err2	1.47.2~rc1-2
  install ok installed	libcommons-codec-java	libcommons-codec-java	1.17.1-1
  install ok installed	libcommons-compress-java	libcommons-compress-java	1.27.1-2
  install ok installed	libcommons-io-java	libcommons-io-java	2.17.0-1
  install ok installed	libcommons-net-java	libcommons-net-java	3.9.0-1
  install ok installed	libcommons-parent-java	libcommons-parent-java	56-1
  install ok installed	libcrypt1:amd64	libcrypt1	1:4.4.36-5
  install ok installed	libdb5.3t64:amd64	libdb5.3t64	5.3.28+dfsg2-9
  install ok installed	libdebconfclient0:amd64	libdebconfclient0	0.274
  install ok installed	libext2fs2t64:amd64	libext2fs2t64	1.47.2~rc1-2
  install ok installed	libffi7:amd64	libffi7	3.3-6
  install ok installed	libffi8:amd64	libffi8	3.4.6-1
  install ok installed	libfile-find-rule-perl	libfile-find-rule-perl	0.34-3
  install ok installed	libgcc-s1:amd64	libgcc-s1	14.2.0-8
  install ok installed	libgcrypt20:amd64	libgcrypt20	1.11.0-6
  install ok installed	libgdbm-compat4t64:amd64	libgdbm-compat4t64	1.24-2
  install ok installed	libgdbm6t64:amd64	libgdbm6t64	1.24-2
  install ok installed	libgmp10:amd64	libgmp10	2:6.3.0+dfsg-3
  install ok installed	libgnutls30t64:amd64	libgnutls30t64	3.8.8-2
  install ok installed	libgpg-error0:amd64	libgpg-error0	1.51-2
  install ok installed	libgssapi-krb5-2:amd64	libgssapi-krb5-2	1.21.3-3
  install ok installed	libhogweed6t64:amd64	libhogweed6t64	3.10-1+b1
  install ok installed	libidn2-0:amd64	libidn2-0	2.3.7-2+b1
  install ok installed	libjaxen-java	libjaxen-java	1.1.6-5
  install ok installed	libjdom1-java	libjdom1-java	1.1.3-3
  install ok installed	libk5crypto3:amd64	libk5crypto3	1.21.3-3
  install ok installed	libkeyutils1:amd64	libkeyutils1	1.6.3-4
  install ok installed	libkrb5-3:amd64	libkrb5-3	1.21.3-3
  install ok installed	libkrb5support0:amd64	libkrb5support0	1.21.3-3
  install ok installed	liblz4-1:amd64	liblz4-1	1.9.4-3+b1
  install ok installed	liblzma5:amd64	liblzma5	5.6.3-1+b1
  install ok installed	libmd0:amd64	libmd0	1.1.0-2+b1
  install ok installed	libmount1:amd64	libmount1	2.40.2-12
  install ok installed	libnettle8t64:amd64	libnettle8t64	3.10-1+b1
  install ok installed	libnsl2:amd64	libnsl2	1.3.0-3+b3
  install ok installed	libnumber-compare-perl	libnumber-compare-perl	0.03-3
  install ok installed	libp11-kit0:amd64	libp11-kit0	0.25.5-2+b1
  install ok installed	libpam-modules:amd64	libpam-modules	1.5.3-7+b1
  install ok installed	libpam-modules-bin	libpam-modules-bin	1.5.3-7+b1
  install ok installed	libpam-runtime	libpam-runtime	1.5.3-7
  install ok installed	libpam0g:amd64	libpam0g	1.5.3-7+b1
  install ok installed	libpcre2-8-0:amd64	libpcre2-8-0	10.44-5
  install ok installed	libpcre3:amd64	libpcre3	2:8.39-15.1
  install ok installed	libperl5.36:amd64	libperl5.36	5.36.0-7+deb12u1
  install ok installed	libperl5.40:amd64	libperl5.40	5.40.0-8
  install ok installed	libseccomp2:amd64	libseccomp2	2.5.5-2
  install ok installed	libselinux1:amd64	libselinux1	3.7-3+b1
  install ok installed	libsemanage-common	libsemanage-common	3.7-2
  install ok installed	libsemanage2:amd64	libsemanage2	3.7-2+b1
  install ok installed	libsepol1:amd64	libsepol1	3.1-1
  install ok installed	libsepol2:amd64	libsepol2	3.7-1
  install ok installed	libsmartcols1:amd64	libsmartcols1	2.40.2-12
  install ok installed	libss2:amd64	libss2	1.47.2~rc1-2
  install ok installed	libssl1.1:amd64	libssl1.1	1.1.1w-0+deb11u1
  install ok installed	libssl3t64:amd64	libssl3t64	3.3.2-2
  install ok installed	libstdc++6:amd64	libstdc++6	14.2.0-8
  install ok installed	libsystemd0:amd64	libsystemd0	257-2
  install ok installed	libtasn1-6:amd64	libtasn1-6	4.19.0-3+b3
  install ok installed	libtext-glob-perl	libtext-glob-perl	0.11-3
  install ok installed	libtinfo6:amd64	libtinfo6	6.5-2+b1
  install ok installed	libtirpc-common	libtirpc-common	1.3.4+ds-1.3
  install ok installed	libtirpc3t64:amd64	libtirpc3t64	1.3.4+ds-1.3+b1
  install ok installed	libudev1:amd64	libudev1	257-2
  install ok installed	libunistring2:amd64	libunistring2	1.0-2
  install ok installed	libunistring5:amd64	libunistring5	1.3-1
  install ok installed	libuuid1:amd64	libuuid1	2.40.2-12
  install ok installed	libxerces2-java	libxerces2-java	2.12.2-1
  install ok installed	libxml-commons-external-java	libxml-commons-external-java	1.4.01-6
  install ok installed	libxml-commons-resolver1.1-java	libxml-commons-resolver1.1-java	1.2-11
  install ok installed	libxxhash0:amd64	libxxhash0	0.8.2-2+b2
  install ok installed	libzstd1:amd64	libzstd1	1.5.6+dfsg-1+b1
  install ok installed	login	login	1:4.16.0-2+really2.40.2-12
  install ok installed	login.defs	login.defs	1:4.16.0-7
  install ok installed	logsave	logsave	1.47.2~rc1-2
  install ok installed	lsb-base	lsb-base	11.6
  install ok installed	mawk	mawk	1.3.4.20240905-1
  install ok installed	mount	mount	2.40.2-12
  install ok installed	ncurses-base	ncurses-base	6.5-2
  install ok installed	ncurses-bin	ncurses-bin	6.5-2+b1
  install ok installed	openssl-provider-legacy	openssl-provider-legacy	3.3.2-2
  install ok installed	passwd	passwd	1:4.16.0-7
  install ok installed	perl	perl	5.40.0-8
  install ok installed	perl-base	perl-base	5.40.0-8
  install ok installed	perl-modules-5.36	perl-modules-5.36	5.36.0-7+deb12u1
  install ok installed	perl-modules-5.40	perl-modules-5.40	5.40.0-8
  install ok installed	sed	sed	4.9-2
  install ok installed	sysvinit-utils	sysvinit-utils	3.11-1
  install ok installed	tar	tar	1.35+dfsg-3
  install ok installed	tzdata	tzdata	2024b-4
  install ok installed	usrmerge	usrmerge	39
  install ok installed	util-linux	util-linux	2.40.2-12
  install ok installed	util-linux-extra	util-linux-extra	2.40.2-12
  install ok installed	zlib1g:amd64	zlib1g	1:1.3.dfsg+really1.3.1-1+b1
0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'remove', 'libapache-pom-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-net-java', 'libcommons-parent-java', 'libjaxen-java', 'libjdom1-java', 'libxerces2-java', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'ipig']
0m33.2s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  The following packages were automatically installed and are no longer required:
    gcc-12-base libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  The following packages will be REMOVED:
    ipig libapache-pom-java libcommons-codec-java libcommons-compress-java
    libcommons-io-java libcommons-net-java libcommons-parent-java libjaxen-java
    libjdom1-java libxerces2-java libxml-commons-external-java
    libxml-commons-resolver1.1-java
  0 upgraded, 0 newly installed, 12 to remove and 0 not upgraded.
  After this operation, 4989 kB disk space will be freed.
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 9700 files and directories currently installed.)
  Removing ipig (0.0.r5-5) ...
  Removing libcommons-compress-java (1.27.1-2) ...
  Removing libcommons-codec-java (1.17.1-1) ...
  Removing libcommons-io-java (2.17.0-1) ...
  Removing libcommons-net-java (3.9.0-1) ...
  Removing libjdom1-java (1.1.3-3) ...
  Removing libjaxen-java (1.1.6-5) ...
  Removing libxerces2-java (2.12.2-1) ...
  Removing libxml-commons-external-java (1.4.01-6) ...
  Removing libxml-commons-resolver1.1-java (1.2-11) ...
  Removing libcommons-parent-java (56-1) ...
  Removing libapache-pom-java (33-2) ...
0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'remove', 'libapache-pom-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-net-java', 'libcommons-parent-java', 'libjaxen-java', 'libjdom1-java', 'libxerces2-java', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'ipig']
0m33.2s INFO: Running scripts post_remove
0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_remove_exceptions']
0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_remove_exceptions']
0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg', '--purge', 'libapache-pom-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-net-java', 'libcommons-parent-java', 'libjaxen-java', 'libjdom1-java', 'libxerces2-java', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java']
0m33.2s DUMP: 
  dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed
  dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed
  dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed
  dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed
  dpkg: warning: ignoring request to remove libcommons-net-java which isn't installed
  dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed
  dpkg: warning: ignoring request to remove libjaxen-java which isn't installed
  dpkg: warning: ignoring request to remove libjdom1-java which isn't installed
  dpkg: warning: ignoring request to remove libxerces2-java which isn't installed
  dpkg: warning: ignoring request to remove libxml-commons-external-java which isn't installed
  (Reading database ... 9515 files and directories currently installed.)
  Purging configuration files for libxml-commons-resolver1.1-java (1.2-11) ...
0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg', '--purge', 'libapache-pom-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-net-java', 'libcommons-parent-java', 'libjaxen-java', 'libjdom1-java', 'libxerces2-java', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java']
0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg', '--purge', 'ipig']
0m33.2s DUMP: 
  dpkg: warning: ignoring request to remove ipig which isn't installed
0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg', '--purge', 'ipig']
0m33.2s INFO: Running scripts post_purge
0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_purge_exceptions']
0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_purge_exceptions']
0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg', '--purge', '--pending']
0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg', '--purge', '--pending']
0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg', '--remove', '--pending']
0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg', '--remove', '--pending']
0m33.3s INFO: Running scripts post_test
0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_test_exceptions']
0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'tmp/scripts/post_test_exceptions']
0m33.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m33.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg-divert', '--list']
0m33.6s DUMP: 
  diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra
  diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64
  local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
  diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra
  diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64
  diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra
  local diversion of /home to /home.distrib
  diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
  diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64
  diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64
  diversion of /libx32 to /.libx32.usr-is-merged by base-files
  local diversion of /usr/bin/sync to /usr/bin/sync.distrib
  diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra
  diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra
  diversion of /lib32 to /.lib32.usr-is-merged by base-files
  diversion of /libo32 to /.libo32.usr-is-merged by base-files
  diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64
  diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64
  diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra
0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'dpkg-divert', '--list']
0m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'clean']
0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm', 'apt-get', 'clean']
0m33.6s DEBUG: Recording chroot state
0m34.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/shm']
0m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/shm']
0m34.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/console']
0m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/console']
0m34.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/ptmx']
0m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/ptmx']
0m34.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/pts']
0m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/dev/pts']
0m34.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/proc']
0m34.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm/proc']
0m34.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m34.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphq_xe4bm']
0m34.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmphq_xe4bm
0m34.5s INFO: PASS: Upgrading between Debian distributions.
0m34.5s INFO: PASS: All tests.
0m34.5s INFO: piuparts run ends.

ret=0
End: 2024-12-16 21:18:28 GMT