Start: 2025-08-19 10:54:01 GMT [oldstable] Package: python3-mdanalysis Source: mdanalysis (2.4.2+dfsg1-1) Version: 2.4.2+dfsg1-1+b1 Installed-Size: 16823 Maintainer: Debichem Team Architecture: amd64 Depends: python3-duecredit, python3 (<< 3.12), python3 (>= 3.11~), python3-biopython (>= 1.80), python3-fasteners, python3-griddataformats (>= 0.4.0), python3-gsd (>= 1.9.3~), python3-joblib (>= 0.12), python3-matplotlib (>= 1.5.1), python3-mmtf (>= 1.0.0), python3-networkx (>= 2.0), python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3-packaging, python3-scipy (>= 1.5.0), python3-threadpoolctl, python3-tqdm (>= 4.43.0), python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11) Recommends: python3-sklearn Suggests: python-mdanalysis-doc Description: analyse molecular dynamics files and trajectories Homepage: https://www.mdanalysis.org/ Description-md5: 9d4e18df399b20b80dcfdf83cc426a35 Section: python Priority: optional Filename: pool/main/m/mdanalysis/python3-mdanalysis_2.4.2+dfsg1-1+b1_amd64.deb Size: 1628048 MD5sum: f9147d1100047da9f9dad2a783df22ca SHA256: c9c4961c285f07d3b16dc1450989d0842411d5feaee3a9977c55cef6f492f82f [stable] Package: python3-mdanalysis Source: mdanalysis Version: 2.9.0-12 Installed-Size: 24691 Maintainer: Debichem Team Architecture: amd64 Depends: python3-duecredit, python3-biopython (>= 1.80), python3 (<< 3.14), python3 (>= 3.13~), python3-filelock, python3-griddataformats, python3-joblib, python3-matplotlib, python3-mda-xdrlib, python3-mmtf, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-scipy, python3-threadpoolctl, python3-tqdm, python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11) Recommends: python3-sklearn Suggests: python-mdanalysis-doc Description: analyse molecular dynamics files and trajectories Homepage: https://www.mdanalysis.org/ Description-md5: 9d4e18df399b20b80dcfdf83cc426a35 Section: python Priority: optional Filename: pool/main/m/mdanalysis/python3-mdanalysis_2.9.0-12_amd64.deb Size: 4203256 MD5sum: 3680ee0835e0925da5b223599053549c SHA256: 71525c9a3b91dc3fce89b4aff6727875367544710e81882f39ff4adca5e5dde0 [testing] Package: python3-mdanalysis Source: mdanalysis Version: 2.9.0-12 Installed-Size: 24691 Maintainer: Debichem Team Architecture: amd64 Depends: python3-duecredit, python3-biopython (>= 1.80), python3 (<< 3.14), python3 (>= 3.13~), python3-filelock, python3-griddataformats, python3-joblib, python3-matplotlib, python3-mda-xdrlib, python3-mmtf, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-scipy, python3-threadpoolctl, python3-tqdm, python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11) Recommends: python3-sklearn Suggests: python-mdanalysis-doc Description: analyse molecular dynamics files and trajectories Homepage: https://www.mdanalysis.org/ Description-md5: 9d4e18df399b20b80dcfdf83cc426a35 Section: python Priority: optional Filename: pool/main/m/mdanalysis/python3-mdanalysis_2.9.0-12_amd64.deb Size: 4203256 MD5sum: 3680ee0835e0925da5b223599053549c SHA256: 71525c9a3b91dc3fce89b4aff6727875367544710e81882f39ff4adca5e5dde0 [sid] Package: python3-mdanalysis Source: mdanalysis Version: 2.9.0-12 Installed-Size: 24691 Maintainer: Debichem Team Architecture: amd64 Depends: python3-duecredit, python3-biopython (>= 1.80), python3 (<< 3.14), python3 (>= 3.13~), python3-filelock, python3-griddataformats, python3-joblib, python3-matplotlib, python3-mda-xdrlib, python3-mmtf, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-scipy, python3-threadpoolctl, python3-tqdm, python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11) Recommends: python3-sklearn Suggests: python-mdanalysis-doc Description: analyse molecular dynamics files and trajectories Homepage: https://www.mdanalysis.org/ Description-md5: 9d4e18df399b20b80dcfdf83cc426a35 Section: python Priority: optional Filename: pool/main/m/mdanalysis/python3-mdanalysis_2.9.0-12_amd64.deb Size: 4203256 MD5sum: 3680ee0835e0925da5b223599053549c SHA256: 71525c9a3b91dc3fce89b4aff6727875367544710e81882f39ff4adca5e5dde0 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt python3-mdanalysis=2.9.0-12 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508101417~1.6.0-7-g17c4ea32 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat --apt python3-mdanalysis=2.9.0-12 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-38-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.147-1 (2025-08-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9drck01o 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9drck01o 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9drck01o', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9drck01o', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9drck01o/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9drck01o/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9drck01o/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'update'] 0m0.7s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'update'] 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-yf', 'dist-upgrade'] 0m0.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-yf', 'dist-upgrade'] 0m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.0s DUMP: 9ec3d089399c2f7b28e5238096956c7d - 0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.0s INFO: Running scripts post_setup 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_zz_backports'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_setup_zz_backports'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.6s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u11 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b8 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u2 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14+deb12u1 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u10 install ok installed libc6:amd64 libc6 2.36-9+deb12u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4+deb12u1 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14+deb12u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u3 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u3 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14+deb12u1 install ok installed libsystemd0:amd64 libsystemd0 252.36-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.36-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+deb12u1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u3 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u2 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2025b-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u3 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u3 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/oldstable222sid/reference-chroot-metadata.dat 0m1.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 0m1.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 0m1.8s INFO: Running scripts is_testable 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/is_testable_uninstallable'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/is_testable_uninstallable'] 0m1.8s INFO: Running scripts pre_test 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_test_exceptions'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_test_exceptions'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_test_root_password'] 0m1.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_test_root_password'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'show', '--no-all-versions', 'python3-mdanalysis'] 0m1.9s DUMP: Package: python3-mdanalysis Source: mdanalysis (2.4.2+dfsg1-1) Version: 2.4.2+dfsg1-1+b1 Installed-Size: 16823 Maintainer: Debichem Team Architecture: amd64 Depends: python3-duecredit, python3 (<< 3.12), python3 (>= 3.11~), python3-biopython (>= 1.80), python3-fasteners, python3-griddataformats (>= 0.4.0), python3-gsd (>= 1.9.3~), python3-joblib (>= 0.12), python3-matplotlib (>= 1.5.1), python3-mmtf (>= 1.0.0), python3-networkx (>= 2.0), python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3-packaging, python3-scipy (>= 1.5.0), python3-threadpoolctl, python3-tqdm (>= 4.43.0), python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11) Recommends: python3-sklearn Suggests: python-mdanalysis-doc Description-en: analyse molecular dynamics files and trajectories MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists. . MDAnalysis allows one to read particle-based trajectories (including individual coordinate frames such as biomolecules in the PDB format) and access the atomic coordinates through NumPy arrays. This provides a flexible and relatively fast framework for complex analysis tasks. In addition, powerful atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. . It works with a wide range of popular simulation packages including Gromacs, Amber, NAMD, CHARMM, DL_Poly, HooMD, LAMMPS and many others ?? see the lists of supported trajectory formats and topology formats. MDAnalysis also includes widely used analysis algorithms in the MDAnalysis.analysis module. . The MDAnalysis project uses an open governance model and is fiscally sponsored by NumFOCUS. . This package installs the library for Python 3. Description-md5: 9d4e18df399b20b80dcfdf83cc426a35 Homepage: https://www.mdanalysis.org/ Section: python Priority: optional Filename: pool/main/m/mdanalysis/python3-mdanalysis_2.4.2+dfsg1-1+b1_amd64.deb Size: 1628048 MD5sum: f9147d1100047da9f9dad2a783df22ca SHA256: c9c4961c285f07d3b16dc1450989d0842411d5feaee3a9977c55cef6f492f82f 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'show', '--no-all-versions', 'python3-mdanalysis'] 0m1.9s INFO: apt-cache knows about the following packages: python3-mdanalysis 0m1.9s INFO: Running scripts pre_install 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 0m2.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.11,o=Debian,a=oldstable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 0m2.0s DUMP: python3-mdanalysis: Installed: (none) Candidate: 2.4.2+dfsg1-1+b1 Version table: 2.4.2+dfsg1-1+b1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis'] 0m51.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libperl5.36 libpng16-16 libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libstdc++-12-dev libtcl8.6 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mailcap media-types mime-support openssl perl perl-modules-5.36 procps python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-biopython python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-citeproc python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-duecredit python3-fasteners python3-fonttools python3-fs python3-gast python3-griddataformats python3-gsd python3-idna python3-joblib python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mmtf python3-monotonic python3-mpmath python3-mrcfile python3-msgpack python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-pyparsing python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-scipy python3-six python3-sympy python3-threadpoolctl python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Suggested packages: binutils-doc blt-demo cpp-doc gcc-12-locales cpp-12-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc gdbm-l10n low-memory-monitor krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils sensible-utils libstdc++-12-doc tcl8.6 tk8.6 libxsimd-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python-cycler-doc python-gsd-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mdanalysis-doc python-mpmath-doc python3-gmpy2 gfortran python3-pytest python-pil-doc python3-setuptools python-ply-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.11-venv python3.11-doc binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2 bzip2 file xz-utils netbase psmisc python-biopython-doc ncbi-blast+ python3-pytest python3-simplejson python3-psutil python3-bs4 python3-html5lib python3-sklearn python3-gdal python3-pydot python3-pygraphviz python3-yaml python3-olefile isympy-common The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libperl5.36 libpng16-16 libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libstdc++-12-dev libtcl8.6 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mailcap media-types mime-support openssl perl perl-modules-5.36 procps python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-biopython python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-citeproc python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-duecredit python3-fasteners python3-fonttools python3-fs python3-gast python3-griddataformats python3-gsd python3-idna python3-joblib python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-mdanalysis python3-minimal python3-mmtf python3-monotonic python3-mpmath python3-mrcfile python3-msgpack python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-pyparsing python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-scipy python3-six python3-sympy python3-threadpoolctl python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 203 newly installed, 0 to remove and 0 not upgraded. Need to get 211 MB of archives. After this operation, 1020 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u2 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u2 [4207 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u2 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.16-1~deb12u1 [2026 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u6 [817 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1+deb12u1 [98.9 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u6 [2064 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u3 [32.8 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u3 [78.9 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:19 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u3 [332 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u3 [135 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2+deb12u1 [839 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u6 [1798 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u6 [573 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:30 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.16-1~deb12u1 [1427 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u4 [398 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:54 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1.1 [683 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14+deb12u1 [9768 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:74 http://deb.debian.org/debian bookworm/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14+deb12u1 [41.7 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14+deb12u1 [116 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14+deb12u1 [26.1 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14+deb12u1 [9376 B] Get:80 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14+deb12u1 [2193 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14+deb12u1 [969 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14+deb12u1 [2197 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14+deb12u1 [883 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14+deb12u1 [145 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14+deb12u1 [2437 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14+deb12u1 [19.3 MB] Get:87 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:88 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u10 [47.1 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.137-1 [2139 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u10 [1903 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14+deb12u1 [2047 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14+deb12u1 [10.7 MB] Get:97 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:98 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:101 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1+deb12u1 [150 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14+deb12u1 [793 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u6 [1400 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2+deb12u1 [189 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6+deb12u6 [1987 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6+deb12u6 [4742 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:129 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:130 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u2 [316 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1+deb12u1 [231 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:143 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6+deb12u6 [615 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:146 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:149 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:150 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1+deb12u1 [296 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1+deb12u1 [4960 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+deb12u1 [79.0 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+deb12u1 [38.5 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+deb12u1 [74.2 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+deb12u1 [472 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1+deb12u1 [565 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 python3-citeproc all 0.6.0-3 [96.7 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:169 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1+deb12u1 [41.0 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1+deb12u1 [114 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 python3-duecredit all 0.9.1-1.1 [66.7 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 python3-monotonic all 1.6-2 [5728 B] Get:177 http://deb.debian.org/debian bookworm/main amd64 python3-fasteners all 0.17.3-2 [14.7 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:181 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get:182 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 sphinx-rtd-theme-common all 1.2.0+dfsg-1 [997 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 python3-mrcfile all 1.4.3-3 [113 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 python3-griddataformats all 1.0.1-1 [2044 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 python3-gsd amd64 2.7.0-2+b1 [84.5 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 python3-joblib all 1.2.0-4+deb12u1 [211 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 python3-msgpack amd64 1.0.3-2+b1 [67.3 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 python3-mmtf all 1.1.3-1 [17.0 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 python3-mdanalysis amd64 2.4.2+dfsg1-1+b1 [1628 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 211 MB in 4s (50.7 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.36_5.36.0-7+deb12u2_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u2) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.23-3_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-3) ... Selecting previously unselected package libperl5.36:amd64. Preparing to unpack .../3-libperl5.36_5.36.0-7+deb12u2_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-7+deb12u2) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.36.0-7+deb12u2_amd64.deb ... Unpacking perl (5.36.0-7+deb12u2) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../5-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../6-libssl3_3.0.16-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.16-1~deb12u1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../7-libpython3.11-minimal_3.11.2-6+deb12u6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../8-libexpat1_2.5.0-1+deb12u1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1+deb12u1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../9-python3.11-minimal_3.11.2-6+deb12u6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6+deb12u6) ... Setting up libssl3:amd64 (3.0.16-1~deb12u1) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ... Setting up libexpat1:amd64 (2.5.0-1+deb12u1) ... Setting up python3.11-minimal (3.11.2-6+deb12u6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8451 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.4-4_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.20.1-2+deb12u3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.20.1-2+deb12u3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.20.1-2+deb12u3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.20.1-2+deb12u3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../11-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../14-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../15-libsqlite3-0_3.40.1-2+deb12u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-2+deb12u1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../16-libpython3.11-stdlib_3.11.2-6+deb12u6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ... Selecting previously unselected package python3.11. Preparing to unpack .../17-python3.11_3.11.2-6+deb12u6_amd64.deb ... Unpacking python3.11 (3.11.2-6+deb12u6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../18-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8983 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.0.16-1~deb12u1_amd64.deb ... Unpacking openssl (3.0.16-1~deb12u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package binutils-common:amd64. Preparing to unpack .../006-binutils-common_2.40-2_amd64.deb ... Unpacking binutils-common:amd64 (2.40-2) ... Selecting previously unselected package libbinutils:amd64. Preparing to unpack .../007-libbinutils_2.40-2_amd64.deb ... Unpacking libbinutils:amd64 (2.40-2) ... Selecting previously unselected package libctf-nobfd0:amd64. Preparing to unpack .../008-libctf-nobfd0_2.40-2_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.40-2) ... Selecting previously unselected package libctf0:amd64. Preparing to unpack .../009-libctf0_2.40-2_amd64.deb ... Unpacking libctf0:amd64 (2.40-2) ... Selecting previously unselected package libgprofng0:amd64. Preparing to unpack .../010-libgprofng0_2.40-2_amd64.deb ... Unpacking libgprofng0:amd64 (2.40-2) ... Selecting previously unselected package libjansson4:amd64. Preparing to unpack .../011-libjansson4_2.14-2_amd64.deb ... Unpacking libjansson4:amd64 (2.14-2) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../012-binutils-x86-64-linux-gnu_2.40-2_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.40-2) ... Selecting previously unselected package binutils. Preparing to unpack .../013-binutils_2.40-2_amd64.deb ... Unpacking binutils (2.40-2) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../014-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../015-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../016-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../017-libfreetype6_2.12.1+dfsg-5+deb12u4_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-5+deb12u4) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../018-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../019-libfontenc1_1%3a1.1.4-1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.4-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../020-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../021-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../022-xfonts-utils_1%3a7.7+6_amd64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../023-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../024-fontconfig-config_2.14.1-4_amd64.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../025-libfontconfig1_2.14.1-4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.14.1-4) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../026-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../027-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../028-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../029-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../030-libx11-data_2%3a1.8.4-2+deb12u2_all.deb ... Unpacking libx11-data (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../031-libx11-6_2%3a1.8.4-2+deb12u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../032-libxrender1_1%3a0.9.10-1.1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../033-libxft2_2.3.6-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../034-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../035-libxss1_1%3a1.2.3-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../036-libtk8.6_8.6.13-2_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.13-2) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../037-tk8.6-blt2.5_2.5.3+dfsg-4.1_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../038-blt_2.5.3+dfsg-4.1_amd64.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package libisl23:amd64. Preparing to unpack .../039-libisl23_0.25-1.1_amd64.deb ... Unpacking libisl23:amd64 (0.25-1.1) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../040-libmpfr6_4.2.0-1_amd64.deb ... Unpacking libmpfr6:amd64 (4.2.0-1) ... Selecting previously unselected package libmpc3:amd64. Preparing to unpack .../041-libmpc3_1.3.1-1_amd64.deb ... Unpacking libmpc3:amd64 (1.3.1-1) ... Selecting previously unselected package cpp-12. Preparing to unpack .../042-cpp-12_12.2.0-14+deb12u1_amd64.deb ... Unpacking cpp-12 (12.2.0-14+deb12u1) ... Selecting previously unselected package cpp. Preparing to unpack .../043-cpp_4%3a12.2.0-3_amd64.deb ... Unpacking cpp (4:12.2.0-3) ... Selecting previously unselected package fonts-font-awesome. Preparing to unpack .../044-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../045-fonts-lyx_2.3.7-1_all.deb ... Unpacking fonts-lyx (2.3.7-1) ... Selecting previously unselected package libcc1-0:amd64. Preparing to unpack .../046-libcc1-0_12.2.0-14+deb12u1_amd64.deb ... Unpacking libcc1-0:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../047-libgomp1_12.2.0-14+deb12u1_amd64.deb ... Unpacking libgomp1:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package libitm1:amd64. Preparing to unpack .../048-libitm1_12.2.0-14+deb12u1_amd64.deb ... Unpacking libitm1:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../049-libatomic1_12.2.0-14+deb12u1_amd64.deb ... Unpacking libatomic1:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package libasan8:amd64. Preparing to unpack .../050-libasan8_12.2.0-14+deb12u1_amd64.deb ... Unpacking libasan8:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../051-liblsan0_12.2.0-14+deb12u1_amd64.deb ... Unpacking liblsan0:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package libtsan2:amd64. Preparing to unpack .../052-libtsan2_12.2.0-14+deb12u1_amd64.deb ... Unpacking libtsan2:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package libubsan1:amd64. Preparing to unpack .../053-libubsan1_12.2.0-14+deb12u1_amd64.deb ... Unpacking libubsan1:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../054-libquadmath0_12.2.0-14+deb12u1_amd64.deb ... Unpacking libquadmath0:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package libgcc-12-dev:amd64. Preparing to unpack .../055-libgcc-12-dev_12.2.0-14+deb12u1_amd64.deb ... Unpacking libgcc-12-dev:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package gcc-12. Preparing to unpack .../056-gcc-12_12.2.0-14+deb12u1_amd64.deb ... Unpacking gcc-12 (12.2.0-14+deb12u1) ... Selecting previously unselected package gcc. Preparing to unpack .../057-gcc_4%3a12.2.0-3_amd64.deb ... Unpacking gcc (4:12.2.0-3) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../058-libc-dev-bin_2.36-9+deb12u10_amd64.deb ... Unpacking libc-dev-bin (2.36-9+deb12u10) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../059-linux-libc-dev_6.1.137-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (6.1.137-1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../060-libcrypt-dev_1%3a4.4.33-2_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.33-2) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../061-libtirpc-dev_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../062-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../063-rpcsvc-proto_1.4.3-1_amd64.deb ... Unpacking rpcsvc-proto (1.4.3-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../064-libc6-dev_2.36-9+deb12u10_amd64.deb ... Unpacking libc6-dev:amd64 (2.36-9+deb12u10) ... Selecting previously unselected package libstdc++-12-dev:amd64. Preparing to unpack .../065-libstdc++-12-dev_12.2.0-14+deb12u1_amd64.deb ... Unpacking libstdc++-12-dev:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package g++-12. Preparing to unpack .../066-g++-12_12.2.0-14+deb12u1_amd64.deb ... Unpacking g++-12 (12.2.0-14+deb12u1) ... Selecting previously unselected package g++. Preparing to unpack .../067-g++_4%3a12.2.0-3_amd64.deb ... Unpacking g++ (4:12.2.0-3) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../068-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libboost1.74-dev:amd64. Preparing to unpack .../069-libboost1.74-dev_1.74.0+ds1-21_amd64.deb ... Unpacking libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../070-libboost-dev_1.74.0.3_amd64.deb ... Unpacking libboost-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../071-libdeflate0_1.14-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.14-1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../072-libexpat1-dev_2.5.0-1+deb12u1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.5.0-1+deb12u1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../073-libfribidi0_1.0.8-2.1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.8-2.1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../074-libgfortran5_12.2.0-14+deb12u1_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14+deb12u1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../075-libglib2.0-0_2.74.6-2+deb12u6_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.6-2+deb12u6) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../076-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../077-libharfbuzz0b_6.0.0+dfsg-3_amd64.deb ... Unpacking libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../078-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../079-libimagequant0_2.17.0-1_amd64.deb ... Unpacking libimagequant0:amd64 (2.17.0-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../080-libjbig0_2.1-6.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../081-libjpeg62-turbo_1%3a2.1.5-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../082-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../083-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../084-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../085-libjs-sphinxdoc_5.3.0-4_all.deb ... Unpacking libjs-sphinxdoc (5.3.0-4) ... Selecting previously unselected package libopenblas0-pthread:amd64. Preparing to unpack .../086-libopenblas0-pthread_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../087-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../088-liblbfgsb0_3.0+dfsg.4-1_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../089-liblcms2-2_2.14-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.14-2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../090-liblerc4_4.0.0+ds-2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-2) ... Selecting previously unselected package libopenblas0:amd64. Preparing to unpack .../091-libopenblas0_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas0:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libopenblas-pthread-dev:amd64. Preparing to unpack .../092-libopenblas-pthread-dev_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libopenblas-dev:amd64. Preparing to unpack .../093-libopenblas-dev_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas-dev:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../094-libopenjp2-7_2.5.0-2+deb12u1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-2+deb12u1) ... Selecting previously unselected package libpython3.11:amd64. Preparing to unpack .../095-libpython3.11_3.11.2-6+deb12u6_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.2-6+deb12u6) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../096-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../097-libpython3.11-dev_3.11.2-6+deb12u6_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.2-6+deb12u6) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../098-libpython3-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../099-libpython3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../100-libqhull-r8.0_2020.2-5_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-5) ... Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../101-libraqm0_0.7.0-4.1_amd64.deb ... Unpacking libraqm0:amd64 (0.7.0-4.1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../102-libwebp7_1.2.4-0.2+deb12u1_amd64.deb ... Unpacking libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../103-libtiff6_4.5.0-6+deb12u2_amd64.deb ... Unpacking libtiff6:amd64 (4.5.0-6+deb12u2) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../104-libwebpdemux2_1.2.4-0.2+deb12u1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../105-libwebpmux3_1.2.4-0.2+deb12u1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../106-libxml2_2.9.14+dfsg-1.3~deb12u1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package libxsimd-dev:amd64. Preparing to unpack .../107-libxsimd-dev_8.1.0-7_amd64.deb ... Unpacking libxsimd-dev:amd64 (8.1.0-7) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../108-libxslt1.1_1.1.35-1+deb12u1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1+deb12u1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../109-python-matplotlib-data_3.6.3-1_all.deb ... Unpacking python-matplotlib-data (3.6.3-1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../110-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../111-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package python3-all. Preparing to unpack .../112-python3-all_3.11.2-1+b1_amd64.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../113-python3.11-dev_3.11.2-6+deb12u6_amd64.deb ... Unpacking python3.11-dev (3.11.2-6+deb12u6) ... Selecting previously unselected package python3-dev. Preparing to unpack .../114-python3-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../115-python3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../116-python3-appdirs_1.4.4-3_all.deb ... Unpacking python3-appdirs (1.4.4-3) ... Selecting previously unselected package python3-attr. Preparing to unpack .../117-python3-attr_22.2.0-1_all.deb ... Unpacking python3-attr (22.2.0-1) ... Selecting previously unselected package python3-gast. Preparing to unpack .../118-python3-gast_0.5.2-2_all.deb ... Unpacking python3-gast (0.5.2-2) ... Selecting previously unselected package python3-beniget. Preparing to unpack .../119-python3-beniget_0.4.1-3_all.deb ... Unpacking python3-beniget (0.4.1-3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../120-python3-pkg-resources_66.1.1-1+deb12u1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1+deb12u1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../121-python3-numpy_1%3a1.24.2-1+deb12u1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1+deb12u1) ... Selecting previously unselected package python3-renderpm:amd64. Preparing to unpack .../122-python3-renderpm_3.6.12-1+deb12u1_amd64.deb ... Unpacking python3-renderpm:amd64 (3.6.12-1+deb12u1) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../123-python3-reportlab-accel_3.6.12-1+deb12u1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.6.12-1+deb12u1) ... Selecting previously unselected package python3-tk:amd64. Preparing to unpack .../124-python3-tk_3.11.2-3_amd64.deb ... Unpacking python3-tk:amd64 (3.11.2-3) ... Selecting previously unselected package python3-pil.imagetk:amd64. Preparing to unpack .../125-python3-pil.imagetk_9.4.0-1.1+deb12u1_amd64.deb ... Unpacking python3-pil.imagetk:amd64 (9.4.0-1.1+deb12u1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../126-python3-pil_9.4.0-1.1+deb12u1_amd64.deb ... Unpacking python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../127-python3-reportlab_3.6.12-1+deb12u1_all.deb ... Unpacking python3-reportlab (3.6.12-1+deb12u1) ... Selecting previously unselected package xml-core. Preparing to unpack .../128-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../129-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../130-python3-biopython_1.80+dfsg-4+b1_amd64.deb ... Unpacking python3-biopython (1.80+dfsg-4+b1) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../131-python3-brotli_1.0.9-2+b6_amd64.deb ... Unpacking python3-brotli (1.0.9-2+b6) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../132-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../133-python3-chardet_5.1.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.1.0+dfsg-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../134-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../135-python3-lxml_4.9.2-1+b1_amd64.deb ... Unpacking python3-lxml:amd64 (4.9.2-1+b1) ... Selecting previously unselected package python3-citeproc. Preparing to unpack .../136-python3-citeproc_0.6.0-3_all.deb ... Unpacking python3-citeproc (0.6.0-3) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../137-python3-contourpy_1.0.7-1+b1_amd64.deb ... Unpacking python3-contourpy (1.0.7-1+b1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../138-python3-cycler_0.11.0-1_all.deb ... Unpacking python3-cycler (0.11.0-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../139-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../140-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../141-python3-decorator_5.1.1-3_all.deb ... Unpacking python3-decorator (5.1.1-3) ... Selecting previously unselected package python3-idna. Preparing to unpack .../142-python3-idna_3.3-1+deb12u1_all.deb ... Unpacking python3-idna (3.3-1+deb12u1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../143-python3-urllib3_1.26.12-1+deb12u1_all.deb ... Unpacking python3-urllib3 (1.26.12-1+deb12u1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../144-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-duecredit. Preparing to unpack .../145-python3-duecredit_0.9.1-1.1_all.deb ... Unpacking python3-duecredit (0.9.1-1.1) ... Selecting previously unselected package python3-monotonic. Preparing to unpack .../146-python3-monotonic_1.6-2_all.deb ... Unpacking python3-monotonic (1.6-2) ... Selecting previously unselected package python3-fasteners. Preparing to unpack .../147-python3-fasteners_0.17.3-2_all.deb ... Unpacking python3-fasteners (0.17.3-2) ... Selecting previously unselected package python3-ply. Preparing to unpack .../148-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../149-python3-pythran_0.11.0+ds-7_amd64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../150-python3-scipy_1.10.1-2_amd64.deb ... Unpacking python3-scipy (1.10.1-2) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../151-python3-ufolib2_0.14.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.14.0+dfsg1-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../152-python3-mpmath_1.2.1-2_all.deb ... Unpacking python3-mpmath (1.2.1-2) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../153-python3-sympy_1.11.1-1_all.deb ... Unpacking python3-sympy (1.11.1-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../154-python3-tz_2022.7.1-4_all.deb ... Unpacking python3-tz (2022.7.1-4) ... Selecting previously unselected package python3-fs. Preparing to unpack .../155-python3-fs_2.4.16-2_all.deb ... Unpacking python3-fs (2.4.16-2) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../156-python3-lz4_4.0.2+dfsg-1+b2_amd64.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b2) ... Selecting previously unselected package unicode-data. Preparing to unpack .../157-unicode-data_15.0.0-1_all.deb ... Unpacking unicode-data (15.0.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../158-python3-fonttools_4.38.0-1+b1_amd64.deb ... Unpacking python3-fonttools (4.38.0-1+b1) ... Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../159-sphinx-rtd-theme-common_1.2.0+dfsg-1_all.deb ... Unpacking sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Selecting previously unselected package python3-mrcfile. Preparing to unpack .../160-python3-mrcfile_1.4.3-3_all.deb ... Unpacking python3-mrcfile (1.4.3-3) ... Selecting previously unselected package python3-griddataformats. Preparing to unpack .../161-python3-griddataformats_1.0.1-1_all.deb ... Unpacking python3-griddataformats (1.0.1-1) ... Selecting previously unselected package python3-gsd. Preparing to unpack .../162-python3-gsd_2.7.0-2+b1_amd64.deb ... Unpacking python3-gsd (2.7.0-2+b1) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../163-python3-joblib_1.2.0-4+deb12u1_all.deb ... Unpacking python3-joblib (1.2.0-4+deb12u1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../164-python3-kiwisolver_1.4.4-1+b1_amd64.deb ... Unpacking python3-kiwisolver (1.4.4-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../165-python3-pyparsing_3.0.9-1_all.deb ... Unpacking python3-pyparsing (3.0.9-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../166-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../167-python3-matplotlib_3.6.3-1+b1_amd64.deb ... Unpacking python3-matplotlib (3.6.3-1+b1) ... Selecting previously unselected package python3-msgpack. Preparing to unpack .../168-python3-msgpack_1.0.3-2+b1_amd64.deb ... Unpacking python3-msgpack (1.0.3-2+b1) ... Selecting previously unselected package python3-mmtf. Preparing to unpack .../169-python3-mmtf_1.1.3-1_all.deb ... Unpacking python3-mmtf (1.1.3-1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../170-python3-networkx_2.8.8-1_all.deb ... Unpacking python3-networkx (2.8.8-1) ... Selecting previously unselected package python3-threadpoolctl. Preparing to unpack .../171-python3-threadpoolctl_3.1.0-1_all.deb ... Unpacking python3-threadpoolctl (3.1.0-1) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../172-python3-tqdm_4.64.1-1_all.deb ... Unpacking python3-tqdm (4.64.1-1) ... Selecting previously unselected package python3-mdanalysis. Preparing to unpack .../173-python3-mdanalysis_2.4.2+dfsg1-1+b1_amd64.deb ... Unpacking python3-mdanalysis (2.4.2+dfsg1-1+b1) ... Setting up media-types (10.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up fonts-lato (2.0-2.1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u6) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.3+ds-1) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2+deb12u1) ... Setting up binutils-common:amd64 (2.40-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.14-1) ... Setting up linux-libc-dev:amd64 (6.1.137-1) ... Setting up libctf-nobfd0:amd64 (2.40-2) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up libgomp1:amd64 (12.2.0-14+deb12u1) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u3) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u2) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14+deb12u1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-14+deb12u1) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u3) ... Setting up libgfortran5:amd64 (12.2.0-14+deb12u1) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up libubsan1:amd64 (12.2.0-14+deb12u1) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u2) ... Setting up libasan8:amd64 (12.2.0-14+deb12u1) ... Setting up procps (2:4.0.2-3) ... Setting up libopenjp2-7:amd64 (2.5.0-2+deb12u1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u3) ... Setting up libtsan2:amd64 (12.2.0-14+deb12u1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libisl23:amd64 (0.25-1.1) ... Setting up libc-dev-bin (2.36-9+deb12u10) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.16-1~deb12u1) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Setting up libcc1-0:amd64 (12.2.0-14+deb12u1) ... Setting up liblsan0:amd64 (12.2.0-14+deb12u1) ... Setting up libitm1:amd64 (12.2.0-14+deb12u1) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.40-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-14+deb12u1) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgprofng0:amd64 (2.40-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5+deb12u4) ... Setting up libgcc-12-dev:amd64 (12.2.0-14+deb12u1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u3) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1+deb12u1) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up binutils (2.40-2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up perl (5.36.0-7+deb12u2) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-14+deb12u1) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up mailcap (3.70+nmu1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up mime-support (3.66) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up gcc (4:12.2.0-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u10) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6+deb12u6) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3.11:amd64 (3.11.2-6+deb12u6) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14+deb12u1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-monotonic (1.6-2) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up libexpat1-dev:amd64 (2.5.0-1+deb12u1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+deb12u1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1+deb12u1) ... Setting up python3-fasteners (0.17.3-2) ... Setting up python3-urllib3 (1.26.12-1+deb12u1) ... Setting up python3-reportlab (3.6.12-1+deb12u1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-msgpack (1.0.3-2+b1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up g++-12 (12.2.0-14+deb12u1) ... Setting up python3-pkg-resources (66.1.1-1+deb12u1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up python3-renderpm:amd64 (3.6.12-1+deb12u1) ... Setting up python3-joblib (1.2.0-4+deb12u1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-citeproc (0.6.0-3) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up python3-networkx (2.8.8-1) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+deb12u1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6+deb12u6) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1+deb12u1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-contourpy (1.0.7-1+b1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up python3-mrcfile (1.4.3-3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-duecredit (0.9.1-1.1) ... Setting up python3.11-dev (3.11.2-6+deb12u6) ... Setting up python3-gsd (2.7.0-2+b1) ... Setting up python3-mmtf (1.1.3-1) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-griddataformats (1.0.1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9+deb12u10) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Setting up python3-mdanalysis (2.4.2+dfsg1-1+b1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis'] 0m51.8s INFO: Running scripts post_install 0m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 0m51.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 0m53.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 0m53.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp9drck01o to stable 0m53.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m53.1s INFO: Running scripts pre_distupgrade 0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_exceptions'] 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_exceptions'] 0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'update'] 0m54.9s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [138 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9668 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6484 kB] Fetched 16.3 MB in 1s (12.2 MB/s) Reading package lists... 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'update'] 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-yf', 'dist-upgrade'] 1m40.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libtirpc-common libtirpc-dev libtirpc3t64 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-autocommand python3-beniget python3-fasteners python3-gast python3-gsd python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-monotonic python3-more-itertools python3-networkx python3-pkg-resources python3-ply python3-pythran python3-pytz python3-setuptools python3-six python3-typeguard python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libboost1.74-dev libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libhogweed6 libnettle8 libpng16-16 libreadline8 libssl3 libtirpc3 python3-distutils python3-lib2to3 python3-renderpm python3-reportlab-accel The following NEW packages will be installed: cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu fonts-dejavu-mono g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libapt-pkg7.0 libboost1.83-dev libcairo2 libdb5.3t64 libext2fs2t64 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libhogweed6t64 libhwasan0 liblastlog2-2 libnettle8t64 libperl5.40 libpixman-1-0 libpng16-16t64 libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsframe1 libsharpyuv0 libssl3t64 libstdc++-14-dev libtirpc3t64 libunistring5 libxcb-render0 libxcb-shm0 libzopfli1 login.defs netbase openssl-provider-legacy perl-modules-5.40 python3-autocommand python3-cairo python3-filelock python3-freetype python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-looseversion python3-mda-xdrlib python3-more-itertools python3-numpy-dev python3-platformdirs python3-pytz python3-rlpycairo python3-setuptools python3-typeguard python3-typing-extensions python3-zipp python3-zopfli python3.13 python3.13-dev python3.13-minimal python3.13-tk sqv xtl-dev The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu blt bsdutils ca-certificates coreutils cpp cpp-12 dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils fontconfig-config fonts-dejavu-core fonts-lato fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gcc-12-base gpgv grep gzip hostname init-system-helpers libacl1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblas3 libblkid1 libboost-dev libbrotli1 libbsd0 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libdeflate0 libexpat1 libexpat1-dev libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgomp1 libgpg-error0 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libidn2-0 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib libqhull-r8.0 libquadmath0 libraqm0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libstdc++-12-dev libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libtiff6 libtinfo6 libtirpc-common libtirpc-dev libtk8.6 libtsan2 libubsan1 libudev1 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxxhash0 libzstd1 linux-libc-dev login logsave mailcap mawk media-types mount ncurses-base ncurses-bin openssl passwd perl perl-base procps python-matplotlib-data python3 python3-all python3-all-dev python3-attr python3-biopython python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-citeproc python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-duecredit python3-fasteners python3-fonttools python3-fs python3-gast python3-griddataformats python3-gsd python3-idna python3-joblib python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-mdanalysis python3-minimal python3-monotonic python3-mpmath python3-mrcfile python3-msgpack python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-pyparsing python3-pythran python3-reportlab python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 readline-common sed sgml-base sphinx-rtd-theme-common sysvinit-utils tar tk8.6-blt2.5 tzdata unicode-data usr-is-merged util-linux util-linux-extra x11-common xfonts-utils xml-core zlib1g zlib1g-dev 250 upgraded, 71 newly installed, 16 to remove and 0 not upgraded. Need to get 325 MB of archives. After this operation, 491 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 base-files amd64 13.8 [73.2 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libnsl-dev amd64 1.3.0-3+b3 [67.5 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.41-12 [1991 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [191 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [304 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.41-12 [2846 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.41-12 [637 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.5.1-1 [307 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.5.1-1 [2437 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:23 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.12.38-1 [2627 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 debianutils amd64 5.23.2 [92.4 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.37-2+b5 [1500 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libcap2 amd64 1:2.75-10+b1 [28.8 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.7-1 [453 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.41-5 [110 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 coreutils amd64 9.7-3 [3024 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 dash amd64 0.5.12-12 [98.5 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 diffutils amd64 1:3.10-4 [387 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 dpkg amd64 1.22.21 [1538 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 findutils amd64 4.10.0-3 [700 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 grep amd64 3.11-4 [431 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 gzip amd64 1.13-1 [138 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 hostname amd64 3.25 [11.0 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.4-2 [186 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libcap-ng0 amd64 0.8.5-4+b1 [17.6 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libaudit1 amd64 1:4.0.2-2+b2 [55.1 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.1-6 [267 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 perl-base amd64 5.40.1-6 [1666 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 debconf all 1.5.91 [121 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 libpam0g amd64 1.7.0-5 [69.9 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 libpam-modules-bin amd64 1.7.0-5 [49.1 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 libpam-modules amd64 1.7.0-5 [179 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.41-5 [112 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5+20250216-2 [348 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5+20250216-2 [438 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 sed amd64 4.9-2 [329 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.41-5 [171 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-7 [914 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 liblastlog2-2 amd64 2.41-5 [28.5 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.41-5 [209 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.41-5 [143 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.41-5 [37.6 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.41-5 [1235 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 util-linux-extra amd64 2.41-5 [300 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 sqv amd64 1.3.0-3 [661 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 liblz4-1 amd64 1.10.0-4 [63.9 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.8.1-1 [309 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.7-1 [152 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 libapt-pkg7.0 amd64 3.0.3 [1113 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.280 [10.6 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 base-passwd amd64 3.6.7 [53.7 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-2 [131 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libsemanage-common all 3.8.1-1 [7812 B] Get:91 http://deb.debian.org/debian trixie/main amd64 libsepol2 amd64 3.8.1-1 [296 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.4-2 [1229 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 adduser all 3.152 [191 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 debian-archive-keyring all 2025.1 [179 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 libseccomp2 amd64 2.6.0-2 [51.7 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 apt amd64 3.0.3 [1452 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 init-system-helpers all 1.68 [38.7 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5+20250216-2 [273 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.14-4 [34.1 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:104 http://deb.debian.org/debian trixie/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libisl23 amd64 0.27-1 [659 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libmpfr6 amd64 4.2.2-1 [729 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 g++-12 amd64 12.4.0-5 [10.8 MB] Get:110 http://deb.debian.org/debian trixie/main amd64 gcc-12 amd64 12.4.0-5 [19.6 MB] Get:111 http://deb.debian.org/debian trixie/main amd64 cpp-12 amd64 12.4.0-5 [9887 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 libstdc++-12-dev amd64 12.4.0-5 [2081 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libcc1-0 amd64 14.2.0-19 [42.8 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libgcc-12-dev amd64 12.4.0-5 [2434 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 gcc-12-base amd64 12.4.0-5 [43.9 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libgprofng0 amd64 2.44-3 [808 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libctf0 amd64 2.44-3 [88.6 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libctf-nobfd0 amd64 2.44-3 [156 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 libsframe1 amd64 2.44-3 [78.4 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3 [1014 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 binutils-common amd64 2.44-3 [2509 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 binutils amd64 2.44-3 [265 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libbinutils amd64 2.44-3 [534 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:133 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get:134 http://deb.debian.org/debian trixie/main amd64 logsave amd64 1.47.2-3+b3 [24.9 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libext2fs2t64 amd64 1.47.2-3+b3 [213 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 e2fsprogs amd64 1.47.2-3+b3 [591 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.84.3-1 [1515 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.48-1 [282 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.13.5-1 [1068 B] Get:149 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get:150 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.13.5-1 [1068 B] Get:151 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get:155 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get:156 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.15.3-1 [16.3 MB] Get:157 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 python3-mdanalysis amd64 2.9.0-12 [4203 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 python3-gsd amd64 3.4.2-2+b1 [209 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-4 [23.8 MB] Get:164 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 python3-msgpack amd64 1.0.3-3+b4 [84.5 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB] Get:167 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.4.0-1 [1297 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.57.0-1 [1438 kB] Get:170 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get:172 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:174 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-4 [260 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:176 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:183 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:186 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:192 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 python3.13-tk amd64 3.13.5-2 [108 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:199 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB] Get:201 http://deb.debian.org/debian trixie/main amd64 python3-citeproc all 0.8.2-1 [99.0 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 python3-looseversion all 1.3.0-3 [8964 B] Get:203 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20250419 [162 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:206 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.2-1 [128 kB] Get:207 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.3.0-3 [115 kB] Get:209 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 python3-duecredit all 0.10.2-2 [70.6 kB] Get:212 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:214 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:215 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:216 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get:217 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:218 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:219 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:220 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:221 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:222 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:223 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:224 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:225 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:226 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:227 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:229 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:230 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:235 http://deb.debian.org/debian trixie/main amd64 python3-filelock all 3.18.0-1 [12.8 kB] Get:236 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get:237 http://deb.debian.org/debian trixie/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:238 http://deb.debian.org/debian trixie/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 python3-mrcfile all 1.5.4-2 [118 kB] Get:240 http://deb.debian.org/debian trixie/main amd64 python3-griddataformats all 1.0.2-2 [2048 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:242 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:243 http://deb.debian.org/debian trixie/main amd64 python3-joblib all 1.4.2-4 [216 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.10.1+dfsg1-4 [2737 kB] Get:246 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:249 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get:250 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Get:251 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:252 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get:253 http://deb.debian.org/debian trixie/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get:254 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get:255 http://deb.debian.org/debian trixie/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get:256 http://deb.debian.org/debian trixie/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get:257 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:258 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get:259 http://deb.debian.org/debian trixie/main amd64 python3-mda-xdrlib all 0.2.0-3 [11.6 kB] Get:260 http://deb.debian.org/debian trixie/main amd64 python3-tqdm all 4.67.1-5 [90.8 kB] Get:261 http://deb.debian.org/debian trixie/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:262 http://deb.debian.org/debian trixie/main amd64 libopenblas-pthread-dev amd64 0.3.29+ds-3 [5063 kB] Get:263 http://deb.debian.org/debian trixie/main amd64 libopenblas0-pthread amd64 0.3.29+ds-3 [6740 kB] Get:264 http://deb.debian.org/debian trixie/main amd64 libopenblas0 amd64 0.3.29+ds-3 [42.7 kB] Get:265 http://deb.debian.org/debian trixie/main amd64 libopenblas-dev amd64 0.3.29+ds-3 [57.0 kB] Get:266 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:267 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:268 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get:269 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get:270 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.5-2 [2160 kB] Get:271 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.5-2 [5291 kB] Get:272 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get:273 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.5-2 [504 kB] Get:274 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:275 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.41-5 [162 kB] Get:276 http://deb.debian.org/debian trixie/main amd64 gpgv amd64 2.4.7-21+b3 [241 kB] Get:277 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:278 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:279 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:280 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:281 http://deb.debian.org/debian trixie/main amd64 usr-is-merged all 39+nmu2 [5936 B] Get:282 http://deb.debian.org/debian trixie/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB] Get:283 http://deb.debian.org/debian trixie/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19 [11.0 MB] Get:284 http://deb.debian.org/debian trixie/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Get:285 http://deb.debian.org/debian trixie/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Get:286 http://deb.debian.org/debian trixie/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Get:287 http://deb.debian.org/debian trixie/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Get:288 http://deb.debian.org/debian trixie/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19 [21.4 MB] Get:289 http://deb.debian.org/debian trixie/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19 [12.1 MB] Get:290 http://deb.debian.org/debian trixie/main amd64 cpp-14 amd64 14.2.0-19 [1280 B] Get:291 http://deb.debian.org/debian trixie/main amd64 gcc-14 amd64 14.2.0-19 [540 kB] Get:292 http://deb.debian.org/debian trixie/main amd64 g++-14 amd64 14.2.0-19 [22.5 kB] Get:293 http://deb.debian.org/debian trixie/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Get:294 http://deb.debian.org/debian trixie/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:295 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get:296 http://deb.debian.org/debian trixie/main amd64 libss2 amd64 1.47.2-3+b3 [29.7 kB] Get:297 http://deb.debian.org/debian trixie/main amd64 xtl-dev all 0.7.7-1 [90.3 kB] Get:298 http://deb.debian.org/debian trixie/main amd64 libxsimd-dev amd64 13.2.0-1 [133 kB] Get:299 http://deb.debian.org/debian trixie/main amd64 mailcap all 3.74 [32.8 kB] Get:300 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:301 http://deb.debian.org/debian trixie/main amd64 python3-monotonic all 1.6-3 [5340 B] Get:302 http://deb.debian.org/debian trixie/main amd64 python3-fasteners all 0.18-2 [14.0 kB] Get:303 http://deb.debian.org/debian trixie/main amd64 python3-gast all 0.6.0-1 [18.7 kB] Get:304 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get:305 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get:306 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get:307 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:308 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:309 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get:310 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:311 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:312 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get:313 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:314 http://deb.debian.org/debian trixie/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:315 http://deb.debian.org/debian trixie/main amd64 python3-ply all 3.11-9 [62.9 kB] Get:316 http://deb.debian.org/debian trixie/main amd64 python3-pythran amd64 0.17.0+ds-1 [456 kB] Get:317 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.2-3 [4280 B] Get:318 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.2-3 [152 kB] Get:319 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.17.0-1 [16.5 kB] Get:320 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:321 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 325 MB in 4s (82.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42124 files and directories currently installed.) Preparing to unpack .../base-files_13.8_amd64.deb ... Unpacking base-files (13.8) over (12.4+deb12u11) ... Setting up base-files (13.8) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Updating /etc/profile to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42135 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3+b3_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-3+b3) over (1.3.0-2) ... Preparing to unpack .../1-libcrypt-dev_1%3a4.4.38-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.38-1) over (1:4.4.33-2) ... Preparing to unpack .../2-libc6-dev_2.41-12_amd64.deb ... Unpacking libc6-dev:amd64 (2.41-12) over (2.36-9+deb12u10) ... Preparing to unpack .../3-libc-dev-bin_2.41-12_amd64.deb ... Unpacking libc-dev-bin (2.41-12) over (2.36-9+deb12u10) ... Preparing to unpack .../4-libtirpc-common_1.3.6+ds-1_all.deb ... Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../5-libtirpc-dev_1.3.6+ds-1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) over (1.3.3+ds-1) ... dpkg: libtirpc3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libtirpc3 (>= 1.0.2). libnsl2:amd64 depends on libtirpc3 (>= 1.0.2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42143 files and directories currently installed.) Removing libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42136 files and directories currently installed.) Preparing to unpack .../0-libtirpc3t64_1.3.6+ds-1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) ... Preparing to unpack .../1-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) over (1.20.1-2+deb12u3) ... Preparing to unpack .../2-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) over (1.20.1-2+deb12u3) ... Preparing to unpack .../3-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) over (1.20.1-2+deb12u3) ... Preparing to unpack .../4-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) over (1.20.1-2+deb12u3) ... Preparing to unpack .../5-libzstd1_1.5.7+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.7+dfsg-1) over (1.5.4+dfsg2-5) ... Setting up libzstd1:amd64 (1.5.7+dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42149 files and directories currently installed.) Preparing to unpack .../openssl_3.5.1-1_amd64.deb ... Unpacking openssl (3.5.1-1) over (3.0.16-1~deb12u1) ... Preparing to unpack .../libc6_2.41-12_amd64.deb ... Unpacking libc6:amd64 (2.41-12) over (2.36-9+deb12u10) ... Setting up libc6:amd64 (2.41-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42230 files and directories currently installed.) Preparing to unpack .../libc-bin_2.41-12_amd64.deb ... Unpacking libc-bin (2.41-12) over (2.36-9+deb12u10) ... Setting up libc-bin (2.41-12) ... dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-minimal:amd64 depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42230 files and directories currently installed.) Removing libssl3:amd64 (3.0.16-1~deb12u1) ... Selecting previously unselected package openssl-provider-legacy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42218 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.1-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.1-1) ... Selecting previously unselected package libssl3t64:amd64. Preparing to unpack .../libssl3t64_3.5.1-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.1-1) ... Setting up libssl3t64:amd64 (3.5.1-1) ... Setting up openssl-provider-legacy (3.5.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42236 files and directories currently installed.) Preparing to unpack .../zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) over (1:1.2.13.dfsg-1) ... Preparing to unpack .../zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) over (1:1.2.13.dfsg-1) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42238 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) over (1.47.0-2) ... Preparing to unpack .../libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) over (1.6.3-2) ... Preparing to unpack .../libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) over (1.3.0-2) ... Preparing to unpack .../libcrypt1_1%3a4.4.38-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.38-1) over (1:4.4.33-2) ... Setting up libcrypt1:amd64 (1:4.4.38-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42240 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_6.12.38-1_all.deb ... Unpacking linux-libc-dev (6.12.38-1) over (6.1.137-1) ... Selecting previously unselected package gcc-14-base:amd64. Preparing to unpack .../gcc-14-base_14.2.0-19_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-19) ... Setting up gcc-14-base:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43944 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-19_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Setting up libgcc-s1:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43944 files and directories currently installed.) Preparing to unpack .../debianutils_5.23.2_amd64.deb ... Unpacking debianutils (5.23.2) over (5.7-0.5~deb12u1) ... Setting up debianutils (5.23.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43943 files and directories currently installed.) Preparing to unpack .../bash_5.2.37-2+b5_amd64.deb ... Unpacking bash (5.2.37-2+b5) over (5.2.15-2+b8) ... Setting up bash (5.2.37-2+b5) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43943 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.75-10+b1_amd64.deb ... Unpacking libcap2:amd64 (1:2.75-10+b1) over (1:2.66-4+deb12u1) ... Setting up libcap2:amd64 (1:2.75-10+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43944 files and directories currently installed.) Preparing to unpack .../libsystemd0_257.7-1_amd64.deb ... Unpacking libsystemd0:amd64 (257.7-1) over (252.36-1~deb12u1) ... Setting up libsystemd0:amd64 (257.7-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43944 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41-5_amd64.deb ... Unpacking bsdutils (1:2.41-5) over (1:2.38.1-5+deb12u3) ... Setting up bsdutils (1:2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43945 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-3_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-3) over (2:6.2.1+dfsg1-1.1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43945 files and directories currently installed.) Preparing to unpack .../coreutils_9.7-3_amd64.deb ... Unpacking coreutils (9.7-3) over (9.1-1) ... Setting up coreutils (9.7-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43949 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-12_amd64.deb ... Unpacking dash (0.5.12-12) over (0.5.12-2) ... Setting up dash (0.5.12-12) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43946 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-4_amd64.deb ... Unpacking diffutils (1:3.10-4) over (1:3.8-4) ... Setting up diffutils (1:3.10-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43948 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3.1_amd64.deb ... Unpacking tar (1.35+dfsg-3.1) over (1.34+dfsg-1.2+deb12u1) ... Setting up tar (1.35+dfsg-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43949 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.21_amd64.deb ... Unpacking dpkg (1.22.21) over (1.21.22) ... Setting up dpkg (1.22.21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43934 files and directories currently installed.) Preparing to unpack .../findutils_4.10.0-3_amd64.deb ... Unpacking findutils (4.10.0-3) over (4.9.0-4) ... Setting up findutils (4.10.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43932 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-4_amd64.deb ... Unpacking grep (3.11-4) over (3.8-5) ... Setting up grep (3.11-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43932 files and directories currently installed.) Preparing to unpack .../archives/gzip_1.13-1_amd64.deb ... Unpacking gzip (1.13-1) over (1.12-1) ... Setting up gzip (1.13-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43932 files and directories currently installed.) Preparing to unpack .../hostname_3.25_amd64.deb ... Unpacking hostname (3.25) over (3.23+nmu1) ... Setting up hostname (3.25) ... Selecting previously unselected package login.defs. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43932 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.4-2_all.deb ... Unpacking login.defs (1:4.17.4-2) ... Replacing files in old package login (1:4.13+dfsg1-1+deb12u1) ... Setting up login.defs (1:4.17.4-2) ... Installing new version of config file /etc/login.defs ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libdb5.3. libperl5.36:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43937 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43931 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43937 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.2-2_all.deb ... Unpacking libaudit-common (1:4.0.2-2) over (1:3.0.9-1) ... Setting up libaudit-common (1:4.0.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43937 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.5-4+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.5-4+b1) over (0.8.3-1+b3) ... Setting up libcap-ng0:amd64 (0.8.5-4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43937 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.2-2+b2_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.2-2+b2) over (1:3.0.9-1) ... Setting up libaudit1:amd64 (1:4.0.2-2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43938 files and directories currently installed.) Preparing to unpack .../perl_5.40.1-6_amd64.deb ... Unpacking perl (5.40.1-6) over (5.36.0-7+deb12u2) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../perl-modules-5.40_5.40.1-6_all.deb ... Unpacking perl-modules-5.40 (5.40.1-6) ... dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested: libperl5.36:amd64 depends on libgdbm6 (>= 1.21). libgdbm-compat4:amd64 depends on libgdbm6 (>= 1.16). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45501 files and directories currently installed.) Removing libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45495 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.24-2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.24-2) ... dpkg: libgdbm-compat4:amd64: dependency problems, but removing anyway as you requested: libperl5.36:amd64 depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45502 files and directories currently installed.) Removing libgdbm-compat4:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45496 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.24-2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.24-2) ... Selecting previously unselected package libperl5.40:amd64. Preparing to unpack .../libperl5.40_5.40.1-6_amd64.deb ... Unpacking libperl5.40:amd64 (5.40.1-6) ... Preparing to unpack .../perl-base_5.40.1-6_amd64.deb ... Unpacking perl-base (5.40.1-6) over (5.36.0-7+deb12u2) ... Setting up perl-base (5.40.1-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46027 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-6_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-6) over (1.0.8-5+b1) ... Setting up libbz2-1.0:amd64 (1.0.8-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46026 files and directories currently installed.) Preparing to unpack .../debconf_1.5.91_all.deb ... Unpacking debconf (1.5.91) over (1.5.82) ... Setting up debconf (1.5.91) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46025 files and directories currently installed.) Preparing to unpack .../libpam0g_1.7.0-5_amd64.deb ... Unpacking libpam0g:amd64 (1.7.0-5) over (1.5.2-6+deb12u1) ... Setting up libpam0g:amd64 (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46024 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.45-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.45-1) over (10.42-1) ... Setting up libpcre2-8-0:amd64 (10.45-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46024 files and directories currently installed.) Preparing to unpack .../libselinux1_3.8.1-1_amd64.deb ... Unpacking libselinux1:amd64 (3.8.1-1) over (3.4-1+b6) ... Setting up libselinux1:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46024 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.7.0-5_amd64.deb ... Unpacking libpam-modules-bin (1.7.0-5) over (1.5.2-6+deb12u1) ... Setting up libpam-modules-bin (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46015 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.7.0-5_amd64.deb ... Unpacking libpam-modules:amd64 (1.7.0-5) over (1.5.2-6+deb12u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.7.0-5) ... Installing new version of config file /etc/security/access.conf ... Installing new version of config file /etc/security/namespace.init ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45964 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.7.0-5_all.deb ... Unpacking libpam-runtime (1.7.0-5) over (1.5.2-6+deb12u1) ... Setting up libpam-runtime (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46024 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41-5_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41-5) over (1:4.13+dfsg1-1+deb12u1) ... Setting up login (1:4.16.0-2+really2.41-5) ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45926 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.4-4) ... Preparing to unpack .../libtinfo6_6.5+20250216-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.4-4) ... Setting up libtinfo6:amd64 (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45926 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... Unpacking ncurses-bin (6.5+20250216-2) over (6.4-4) ... Setting up ncurses-bin (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45926 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45926 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41-5_amd64.deb ... Unpacking libblkid1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libblkid1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45927 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.46.1-7_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-7) over (3.40.1-2+deb12u1) ... Setting up libsqlite3-0:amd64 (3.46.1-7) ... Selecting previously unselected package liblastlog2-2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45927 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41-5_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45934 files and directories currently installed.) Preparing to unpack .../libmount1_2.41-5_amd64.deb ... Unpacking libmount1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libmount1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45935 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41-5_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libsmartcols1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45936 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41-5_amd64.deb ... Unpacking libuuid1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libuuid1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45937 files and directories currently installed.) Preparing to unpack .../util-linux_2.41-5_amd64.deb ... Unpacking util-linux (2.41-5) over (2.38.1-5+deb12u3) ... Setting up util-linux (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45902 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.41-5_amd64.deb ... Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.41-5) over (2.38.1-5+deb12u3) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux-extra (2.41-5) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45952 files and directories currently installed.) Removing libnettle8:amd64 (3.8.1-2) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45944 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10.1-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.1-1) ... Setting up libnettle8t64:amd64 (3.10.1-1) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45953 files and directories currently installed.) Removing libhogweed6:amd64 (3.8.1-2) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45947 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10.1-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.1-1) ... Setting up libhogweed6t64:amd64 (3.10.1-1) ... Selecting previously unselected package sqv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45954 files and directories currently installed.) Preparing to unpack .../archives/sqv_1.3.0-3_amd64.deb ... Unpacking sqv (1.3.0-3) ... Setting up sqv (1.3.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45967 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-19_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Setting up libstdc++6:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45967 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.3-2_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.3-2) over (0.8.1-1) ... Setting up libxxhash0:amd64 (0.8.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45967 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... Unpacking liblz4-1:amd64 (1.10.0-4) over (1.9.4-1) ... Setting up liblz4-1:amd64 (1.10.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45967 files and directories currently installed.) Preparing to unpack .../liblzma5_5.8.1-1_amd64.deb ... Unpacking liblzma5:amd64 (5.8.1-1) over (5.4.1-1) ... Setting up liblzma5:amd64 (5.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45967 files and directories currently installed.) Preparing to unpack .../libudev1_257.7-1_amd64.deb ... Unpacking libudev1:amd64 (257.7-1) over (252.36-1~deb12u1) ... Setting up libudev1:amd64 (257.7-1) ... Selecting previously unselected package libapt-pkg7.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45967 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.0.3_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46016 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.280_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.280) over (0.270) ... Setting up libdebconfclient0:amd64 (0.280) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46016 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.7_amd64.deb ... Unpacking base-passwd (3.6.7) over (3.6.1) ... Setting up base-passwd (3.6.7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46017 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.2-2+b1_amd64.deb ... Unpacking libacl1:amd64 (2.3.2-2+b1) over (2.3.1-3) ... Setting up libacl1:amd64 (2.3.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46018 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-3_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-3) over (1:2.5.1-4) ... Setting up libattr1:amd64 (1:2.5.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46018 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2+b1_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2+b1) over (1.0.4-2) ... Setting up libmd0:amd64 (1.1.0-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46019 files and directories currently installed.) Preparing to unpack .../libbsd0_0.12.2-2_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-2) over (0.11.7-2) ... Setting up libbsd0:amd64 (0.12.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46019 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.8.1-1_all.deb ... Unpacking libsemanage-common (3.8.1-1) over (3.4-1) ... Setting up libsemanage-common (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46018 files and directories currently installed.) Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8.1-1) over (3.4-2.1) ... Setting up libsepol2:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46018 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.8.1-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.8.1-1) over (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46017 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.17.4-2_amd64.deb ... Unpacking passwd (1:4.17.4-2) over (1:4.13+dfsg1-1+deb12u1) ... Setting up passwd (1:4.17.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46043 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.152_all.deb ... Unpacking adduser (3.152) over (3.134) ... Setting up adduser (3.152) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46051 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2025.1_all.deb ... Unpacking debian-archive-keyring (2025.1) over (2023.3+deb12u2) ... Setting up debian-archive-keyring (2025.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46063 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.6.0-2_amd64.deb ... Unpacking libseccomp2:amd64 (2.6.0-2) over (2.5.4-1+deb12u1) ... Setting up libseccomp2:amd64 (2.6.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46063 files and directories currently installed.) Preparing to unpack .../archives/apt_3.0.3_amd64.deb ... Unpacking apt (3.0.3) over (2.6.1) ... Setting up apt (3.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46055 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.68_all.deb ... Unpacking init-system-helpers (1.68) over (1.65.2) ... Setting up init-system-helpers (1.68) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46055 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... Unpacking ncurses-base (6.5+20250216-2) over (6.4-4) ... Setting up ncurses-base (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46053 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.14-4_amd64.deb ... Unpacking sysvinit-utils (3.14-4) over (3.06-4) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.14-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46053 files and directories currently installed.) Preparing to unpack .../00-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../01-libitm1_14.2.0-19_amd64.deb ... Unpacking libitm1:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../02-libatomic1_14.2.0-19_amd64.deb ... Unpacking libatomic1:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../03-libasan8_14.2.0-19_amd64.deb ... Unpacking libasan8:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../04-liblsan0_14.2.0-19_amd64.deb ... Unpacking liblsan0:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../05-libisl23_0.27-1_amd64.deb ... Unpacking libisl23:amd64 (0.27-1) over (0.25-1.1) ... Preparing to unpack .../06-libmpfr6_4.2.2-1_amd64.deb ... Unpacking libmpfr6:amd64 (4.2.2-1) over (4.2.0-1) ... Preparing to unpack .../07-libmpc3_1.3.1-1+b3_amd64.deb ... Unpacking libmpc3:amd64 (1.3.1-1+b3) over (1.3.1-1) ... Preparing to unpack .../08-g++-12_12.4.0-5_amd64.deb ... Unpacking g++-12 (12.4.0-5) over (12.2.0-14+deb12u1) ... Preparing to unpack .../09-gcc-12_12.4.0-5_amd64.deb ... Unpacking gcc-12 (12.4.0-5) over (12.2.0-14+deb12u1) ... Preparing to unpack .../10-cpp-12_12.4.0-5_amd64.deb ... Unpacking cpp-12 (12.4.0-5) over (12.2.0-14+deb12u1) ... Preparing to unpack .../11-libubsan1_14.2.0-19_amd64.deb ... Unpacking libubsan1:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../12-libstdc++-12-dev_12.4.0-5_amd64.deb ... Unpacking libstdc++-12-dev:amd64 (12.4.0-5) over (12.2.0-14+deb12u1) ... Preparing to unpack .../13-libquadmath0_14.2.0-19_amd64.deb ... Unpacking libquadmath0:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../14-libgfortran5_14.2.0-19_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../15-libcc1-0_14.2.0-19_amd64.deb ... Unpacking libcc1-0:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../16-libgcc-12-dev_12.4.0-5_amd64.deb ... Unpacking libgcc-12-dev:amd64 (12.4.0-5) over (12.2.0-14+deb12u1) ... Preparing to unpack .../17-libtsan2_14.2.0-19_amd64.deb ... Unpacking libtsan2:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../18-gcc-12-base_12.4.0-5_amd64.deb ... Unpacking gcc-12-base:amd64 (12.4.0-5) over (12.2.0-14+deb12u1) ... Preparing to unpack .../19-libgprofng0_2.44-3_amd64.deb ... Unpacking libgprofng0:amd64 (2.44-3) over (2.40-2) ... Preparing to unpack .../20-libctf0_2.44-3_amd64.deb ... Unpacking libctf0:amd64 (2.44-3) over (2.40-2) ... Preparing to unpack .../21-libctf-nobfd0_2.44-3_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.44-3) over (2.40-2) ... Selecting previously unselected package libsframe1:amd64. Preparing to unpack .../22-libsframe1_2.44-3_amd64.deb ... Unpacking libsframe1:amd64 (2.44-3) ... Preparing to unpack .../23-binutils-x86-64-linux-gnu_2.44-3_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.44-3) over (2.40-2) ... Preparing to unpack .../24-binutils-common_2.44-3_amd64.deb ... Unpacking binutils-common:amd64 (2.44-3) over (2.40-2) ... Removing obsolete conffile /etc/gprofng.rc ... Preparing to unpack .../25-binutils_2.44-3_amd64.deb ... Unpacking binutils (2.44-3) over (2.40-2) ... Preparing to unpack .../26-libbinutils_2.44-3_amd64.deb ... Unpacking libbinutils:amd64 (2.44-3) over (2.40-2) ... Preparing to unpack .../27-libjansson4_2.14-2+b3_amd64.deb ... Unpacking libjansson4:amd64 (2.14-2+b3) over (2.14-2) ... Selecting previously unselected package libhwasan0:amd64. Preparing to unpack .../28-libhwasan0_14.2.0-19_amd64.deb ... Unpacking libhwasan0:amd64 (14.2.0-19) ... Selecting previously unselected package libgcc-14-dev:amd64. Preparing to unpack .../29-libgcc-14-dev_14.2.0-19_amd64.deb ... Unpacking libgcc-14-dev:amd64 (14.2.0-19) ... Selecting previously unselected package libstdc++-14-dev:amd64. Preparing to unpack .../30-libstdc++-14-dev_14.2.0-19_amd64.deb ... Unpacking libstdc++-14-dev:amd64 (14.2.0-19) ... Preparing to unpack .../31-libboost-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-dev:amd64 (1.83.0.2+b2) over (1.74.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 47142 files and directories currently installed.) Removing libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Selecting previously unselected package libboost1.83-dev:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 31634 files and directories currently installed.) Preparing to unpack .../libboost1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-4.2) ... Preparing to unpack .../logsave_1.47.2-3+b3_amd64.deb ... Unpacking logsave (1.47.2-3+b3) over (1.47.0-2) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48594 files and directories currently installed.) Removing libext2fs2:amd64 (1.47.0-2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48587 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.2-3+b3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.2-3+b3) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up libext2fs2t64:amd64 (1.47.2-3+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48604 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.2-3+b3_amd64.deb ... Unpacking e2fsprogs (1.47.2-3+b3) over (1.47.0-2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48603 files and directories currently installed.) Preparing to unpack .../libharfbuzz0b_10.2.0-1+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (10.2.0-1+b1) over (6.0.0+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48603 files and directories currently installed.) Removing libglib2.0-0:amd64 (2.74.6-2+deb12u6) ... Selecting previously unselected package libglib2.0-0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48579 files and directories currently installed.) Preparing to unpack .../libglib2.0-0t64_2.84.3-1_amd64.deb ... libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:amd64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... removed '/var/lib/dpkg/info/libglib2.0-0:amd64.postrm' Unpacking libglib2.0-0t64:amd64 (2.84.3-1) ... Preparing to unpack .../libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) over (2.12.1+dfsg-5+deb12u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48604 files and directories currently installed.) Removing libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libpng16-16t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48593 files and directories currently installed.) Preparing to unpack .../libpng16-16t64_1.6.48-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.48-1) ... Preparing to unpack .../readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) over (8.2-1.3) ... dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libreadline8 (>= 7.0~beta). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48605 files and directories currently installed.) Removing libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48592 files and directories currently installed.) Preparing to unpack .../0-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../1-libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Preparing to unpack .../2-libexpat1-dev_2.7.1-2_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.7.1-2) over (2.5.0-1+deb12u1) ... Preparing to unpack .../3-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) over (2.5.0-1+deb12u1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../4-python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Preparing to unpack .../5-python3-all-dev_3.13.5-1_amd64.deb ... Unpacking python3-all-dev (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../6-python3-all_3.13.5-1_amd64.deb ... Unpacking python3-all (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../7-libpython3-all-dev_3.13.5-1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../8-libpython3-dev_3.13.5-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../9-python3-dev_3.13.5-1_amd64.deb ... Unpacking python3-dev (3.13.5-1) over (3.11.2-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48933 files and directories currently installed.) Removing python3-distutils (3.11.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48878 files and directories currently installed.) Preparing to unpack .../tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) over (2.5.3+dfsg-4.1) ... Preparing to unpack .../blt_2.5.3+dfsg-8_amd64.deb ... Unpacking blt (2.5.3+dfsg-8) over (2.5.3+dfsg-4.1) ... Preparing to unpack .../python3-tk_3.13.5-1_amd64.deb ... Unpacking python3-tk:amd64 (3.13.5-1) over (3.11.2-3) ... dpkg: warning: unable to delete old directory '/usr/lib/python3.11/tkinter': Directory not empty Preparing to unpack .../python3-scipy_1.15.3-1_amd64.deb ... Unpacking python3-scipy (1.15.3-1) over (1.10.1-2) ... Preparing to unpack .../python3-biopython_1.85+dfsg-4_amd64.deb ... Unpacking python3-biopython (1.85+dfsg-4) over (1.80+dfsg-4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49051 files and directories currently installed.) Removing python3-renderpm:amd64 (3.6.12-1+deb12u1) ... dpkg: python3-reportlab-accel:amd64: dependency problems, but removing anyway as you requested: python3-reportlab depends on python3-reportlab-accel (>= 3.6.12-1+deb12u1). Removing python3-reportlab-accel:amd64 (3.6.12-1+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49041 files and directories currently installed.) Preparing to unpack .../00-python3-reportlab_4.3.1-1_all.deb ... Unpacking python3-reportlab (4.3.1-1) over (3.6.12-1+deb12u1) ... Preparing to unpack .../01-python3-pil.imagetk_11.1.0-5+b1_amd64.deb ... Unpacking python3-pil.imagetk:amd64 (11.1.0-5+b1) over (9.4.0-1.1+deb12u1) ... Preparing to unpack .../02-python3-pil_11.1.0-5+b1_amd64.deb ... Unpacking python3-pil:amd64 (11.1.0-5+b1) over (9.4.0-1.1+deb12u1) ... Preparing to unpack .../03-python3-mdanalysis_2.9.0-12_amd64.deb ... Unpacking python3-mdanalysis (2.9.0-12) over (2.4.2+dfsg1-1+b1) ... Preparing to unpack .../04-python3-gsd_3.4.2-2+b1_amd64.deb ... Unpacking python3-gsd (3.4.2-2+b1) over (2.7.0-2+b1) ... Preparing to unpack .../05-python3-matplotlib_3.10.1+dfsg1-4_amd64.deb ... Unpacking python3-matplotlib (3.10.1+dfsg1-4) over (3.6.3-1+b1) ... Preparing to unpack .../06-python3-numpy_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1) over (1:1.24.2-1+deb12u1) ... Preparing to unpack .../07-python3-msgpack_1.0.3-3+b4_amd64.deb ... Unpacking python3-msgpack (1.0.3-3+b4) over (1.0.3-2+b1) ... Preparing to unpack .../08-python3-lz4_4.4.0+dfsg-2_amd64.deb ... Unpacking python3-lz4 (4.4.0+dfsg-2) over (4.0.2+dfsg-1+b2) ... Preparing to unpack .../09-python3-lxml_5.4.0-1_amd64.deb ... Unpacking python3-lxml:amd64 (5.4.0-1) over (4.9.2-1+b1) ... Preparing to unpack .../10-python3-kiwisolver_1.4.7-3+b1_amd64.deb ... Unpacking python3-kiwisolver (1.4.7-3+b1) over (1.4.4-1+b1) ... Preparing to unpack .../11-python3-fonttools_4.57.0-1_amd64.deb ... Unpacking python3-fonttools (4.57.0-1) over (4.38.0-1+b1) ... Preparing to unpack .../12-python3-contourpy_1.3.1-1+b1_amd64.deb ... Unpacking python3-contourpy (1.3.1-1+b1) over (1.0.7-1+b1) ... Preparing to unpack .../13-python3-brotli_1.1.0-2+b7_amd64.deb ... Unpacking python3-brotli (1.1.0-2+b7) over (1.0.9-2+b6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51999 files and directories currently installed.) Removing python3-lib2to3 (3.11.2-3) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51917 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) over (3.11.2-1+b1) ... Setting up python3-minimal (3.13.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51916 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../01-tzdata_2025b-4_all.deb ... Unpacking tzdata (2025b-4) over (2025b-0+deb12u1) ... Preparing to unpack .../02-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) over (8.6.13+dfsg-2) ... Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) over (2.37-6) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../04-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1+b2_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1+b2) over (1:1.1.4-1) ... Preparing to unpack .../06-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) over (1.0.9-2+b6) ... Preparing to unpack .../07-x11-common_1%3a7.7+24_all.deb ... Unpacking x11-common (1:7.7+24) over (1:7.7+23) ... Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_amd64.deb ... Unpacking xfonts-utils (1:7.7+7) over (1:7.7+6) ... Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) over (20200910-7) ... Preparing to unpack .../10-fontconfig-config_2.15.0-2.3_amd64.deb ... Unpacking fontconfig-config (2.15.0-2.3) over (2.14.1-4) ... Preparing to unpack .../11-libfontconfig1_2.15.0-2.3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-2.3) over (2.14.1-4) ... Preparing to unpack .../12-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) over (1:1.0.9-1) ... Preparing to unpack .../13-libxdmcp6_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-1) over (1:1.1.2-3) ... Preparing to unpack .../14-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) over (1.15-1) ... Preparing to unpack .../15-libx11-data_2%3a1.8.12-1_all.deb ... Unpacking libx11-data (2:1.8.12-1) over (2:1.8.4-2+deb12u2) ... Preparing to unpack .../16-libx11-6_2%3a1.8.12-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.12-1) over (2:1.8.4-2+deb12u2) ... Preparing to unpack .../17-libxrender1_1%3a0.9.12-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.12-1) over (1:0.9.10-1.1) ... Preparing to unpack .../18-libxft2_2.3.6-1+b4_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b4) over (2.3.6-1) ... Preparing to unpack .../19-libxext6_2%3a1.3.4-1+b3_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b3) over (2:1.3.4-1+b1) ... Preparing to unpack .../20-libxss1_1%3a1.2.3-1+b3_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b3) over (1:1.2.3-1) ... Preparing to unpack .../21-libtk8.6_8.6.16-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.16-1) over (8.6.13-2) ... Selecting previously unselected package python3.13-tk. Preparing to unpack .../22-python3.13-tk_3.13.5-2_amd64.deb ... Unpacking python3.13-tk (3.13.5-2) ... Preparing to unpack .../23-python3-decorator_5.2.1-2_all.deb ... Unpacking python3-decorator (5.2.1-2) over (5.1.1-3) ... Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) over (2.9.14+dfsg-1.3~deb12u1) ... Preparing to unpack .../25-libgpg-error0_1.51-4_amd64.deb ... Unpacking libgpg-error0:amd64 (1.51-4) over (1.46-1) ... Setting up libgpg-error0:amd64 (1.51-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51160 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.11.0-7_amd64.deb ... Unpacking libgcrypt20:amd64 (1.11.0-7) over (1.10.1-3) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51160 files and directories currently installed.) Preparing to unpack .../00-libxslt1.1_1.1.35-1.2_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1.2) over (1.1.35-1+deb12u1) ... Preparing to unpack .../01-python3-citeproc_0.8.2-1_all.deb ... Unpacking python3-citeproc (0.8.2-1) over (0.6.0-3) ... Selecting previously unselected package python3-looseversion. Preparing to unpack .../02-python3-looseversion_1.3.0-3_all.deb ... Unpacking python3-looseversion (1.3.0-3) ... Preparing to unpack .../03-python3-packaging_25.0-1_all.deb ... Unpacking python3-packaging (25.0-1) over (23.0-1) ... Preparing to unpack .../04-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) over (20230311) ... Preparing to unpack .../05-python3-certifi_2025.1.31+ds-1_all.deb ... Unpacking python3-certifi (2025.1.31+ds-1) over (2022.9.24-1) ... Preparing to unpack .../06-python3-charset-normalizer_3.4.2-1_amd64.deb ... Unpacking python3-charset-normalizer (3.4.2-1) over (3.0.1-2) ... Preparing to unpack .../07-python3-idna_3.10-1_all.deb ... Unpacking python3-idna (3.10-1) over (3.3-1+deb12u1) ... Preparing to unpack .../08-python3-urllib3_2.3.0-3_all.deb ... Unpacking python3-urllib3 (2.3.0-3) over (1.26.12-1+deb12u1) ... Preparing to unpack .../09-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) over (5.1.0+dfsg-2) ... Preparing to unpack .../10-python3-requests_2.32.3+dfsg-5_all.deb ... Unpacking python3-requests (2.32.3+dfsg-5) over (2.28.1+dfsg-1) ... Preparing to unpack .../11-python3-duecredit_0.10.2-2_all.deb ... Unpacking python3-duecredit (0.10.2-2) over (0.9.1-1.1) ... Preparing to unpack .../12-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) over (10.0.0) ... Preparing to unpack .../13-libimagequant0_2.18.0-1+b2_amd64.deb ... Unpacking libimagequant0:amd64 (2.18.0-1+b2) over (2.17.0-1) ... Preparing to unpack .../14-libjpeg62-turbo_1%3a2.1.5-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-4) over (1:2.1.5-2) ... Preparing to unpack .../15-liblcms2-2_2.16-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.16-2) over (2.14-2) ... Preparing to unpack .../16-libopenjp2-7_2.5.3-2_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.3-2) over (2.5.0-2+deb12u1) ... Preparing to unpack .../17-libfribidi0_1.0.16-1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.16-1) over (1.0.8-2.1) ... Preparing to unpack .../18-libgraphite2-3_1.3.14-2+b1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-2+b1) over (1.3.14-1) ... Preparing to unpack .../19-libraqm0_0.10.2-1_amd64.deb ... Unpacking libraqm0:amd64 (0.10.2-1) over (0.7.0-4.1) ... Preparing to unpack .../20-libdeflate0_1.23-2_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-2) over (1.14-1) ... Preparing to unpack .../21-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) over (2.1-6.1) ... Preparing to unpack .../22-liblerc4_4.0.0+ds-5_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-5) over (4.0.0+ds-2) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../23-libsharpyuv0_1.5.0-0.1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... Preparing to unpack .../24-libwebp7_1.5.0-0.1_amd64.deb ... Unpacking libwebp7:amd64 (1.5.0-0.1) over (1.2.4-0.2+deb12u1) ... Preparing to unpack .../25-libtiff6_4.7.0-3_amd64.deb ... Unpacking libtiff6:amd64 (4.7.0-3) over (4.5.0-6+deb12u2) ... Preparing to unpack .../26-libwebpdemux2_1.5.0-0.1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.5.0-0.1) over (1.2.4-0.2+deb12u1) ... Preparing to unpack .../27-libwebpmux3_1.5.0-0.1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.5.0-0.1) over (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../28-libpixman-1-0_0.44.0-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.44.0-3) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../29-libxcb-render0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../30-libxcb-shm0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../31-libcairo2_1.18.4-1+b1_amd64.deb ... Unpacking libcairo2:amd64 (1.18.4-1+b1) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../32-python3-cairo_1.27.0-2_amd64.deb ... Unpacking python3-cairo (1.27.0-2) ... Selecting previously unselected package python3-freetype. Preparing to unpack .../33-python3-freetype_2.5.1-1_all.deb ... Unpacking python3-freetype (2.5.1-1) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../34-python3-rlpycairo_0.3.0-3_all.deb ... Unpacking python3-rlpycairo (0.3.0-3) ... Selecting previously unselected package python3-filelock. Preparing to unpack .../35-python3-filelock_3.18.0-1_all.deb ... Unpacking python3-filelock (3.18.0-1) ... Preparing to unpack .../36-libjs-sphinxdoc_8.1.3-5_all.deb ... Unpacking libjs-sphinxdoc (8.1.3-5) over (5.3.0-4) ... Preparing to unpack .../37-fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) over (2.0-2.1) ... Preparing to unpack .../38-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) over (1.2.0+dfsg-1) ... Preparing to unpack .../39-python3-mrcfile_1.5.4-2_all.deb ... Unpacking python3-mrcfile (1.5.4-2) over (1.4.3-3) ... Preparing to unpack .../40-python3-griddataformats_1.0.2-2_all.deb ... Unpacking python3-griddataformats (1.0.2-2) over (1.0.1-1) ... Preparing to unpack .../41-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) over (2:4.0.2-3) ... Preparing to unpack .../42-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) over (2:4.0.2-3) ... Preparing to unpack .../43-python3-joblib_1.4.2-4_all.deb ... Unpacking python3-joblib (1.4.2-4) over (1.2.0-4+deb12u1) ... Preparing to unpack .../44-fonts-lyx_2.4.3-1_all.deb ... Unpacking fonts-lyx (2.4.3-1) over (2.3.7-1) ... Preparing to unpack .../45-python-matplotlib-data_3.10.1+dfsg1-4_all.deb ... Unpacking python-matplotlib-data (3.10.1+dfsg1-4) over (3.6.3-1) ... Preparing to unpack .../46-python3-dateutil_2.9.0-4_all.deb ... Unpacking python3-dateutil (2.9.0-4) over (2.8.2-2) ... Preparing to unpack .../47-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) over (3.0.9-1) ... Preparing to unpack .../48-python3-cycler_0.12.1-1_all.deb ... Unpacking python3-cycler (0.12.1-1) over (0.11.0-1) ... Selecting previously unselected package python3-platformdirs. Preparing to unpack .../49-python3-platformdirs_4.3.7-1_all.deb ... Unpacking python3-platformdirs (4.3.7-1) ... Preparing to unpack .../50-python3-fs_2.4.16-7_all.deb ... Unpacking python3-fs (2.4.16-7) over (2.4.16-2) ... Preparing to unpack .../51-python3-mpmath_1.3.0-1_all.deb ... Unpacking python3-mpmath (1.3.0-1) over (1.2.1-2) ... Preparing to unpack .../52-python3-sympy_1.13.3-5_all.deb ... Unpacking python3-sympy (1.13.3-5) over (1.11.1-1) ... Preparing to unpack .../53-python3-attr_25.3.0-1_all.deb ... Unpacking python3-attr (25.3.0-1) over (22.2.0-1) ... Preparing to unpack .../54-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.17.1+dfsg1-1) over (0.14.0+dfsg1-1) ... Selecting previously unselected package libzopfli1. Preparing to unpack .../55-libzopfli1_1.0.3-3_amd64.deb ... Unpacking libzopfli1 (1.0.3-3) ... Selecting previously unselected package python3-zopfli. Preparing to unpack .../56-python3-zopfli_0.2.3.post1-1+b1_amd64.deb ... Unpacking python3-zopfli (0.2.3.post1-1+b1) ... Preparing to unpack .../57-unicode-data_15.1.0-1_all.deb ... Unpacking unicode-data (15.1.0-1) over (15.0.0-1) ... Preparing to unpack .../58-libqhull-r8.0_2020.2-6+b2_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-6+b2) over (2020.2-5) ... Selecting previously unselected package python3-mda-xdrlib. Preparing to unpack .../59-python3-mda-xdrlib_0.2.0-3_all.deb ... Unpacking python3-mda-xdrlib (0.2.0-3) ... Preparing to unpack .../60-python3-tqdm_4.67.1-5_all.deb ... Unpacking python3-tqdm (4.67.1-5) over (4.64.1-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../61-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Preparing to unpack .../62-libopenblas-pthread-dev_0.3.29+ds-3_amd64.deb ... Unpacking libopenblas-pthread-dev:amd64 (0.3.29+ds-3) over (0.3.21+ds-4) ... Preparing to unpack .../63-libopenblas0-pthread_0.3.29+ds-3_amd64.deb ... Unpacking libopenblas0-pthread:amd64 (0.3.29+ds-3) over (0.3.21+ds-4) ... Preparing to unpack .../64-libopenblas0_0.3.29+ds-3_amd64.deb ... Unpacking libopenblas0:amd64 (0.3.29+ds-3) over (0.3.21+ds-4) ... Preparing to unpack .../65-libopenblas-dev_0.3.29+ds-3_amd64.deb ... Unpacking libopenblas-dev:amd64 (0.3.29+ds-3) over (0.3.21+ds-4) ... Preparing to unpack .../66-libblas3_3.12.1-6_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-6) over (3.11.0-2) ... Preparing to unpack .../67-liblapack3_3.12.1-6_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-6) over (3.11.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../68-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../69-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package libpython3.13:amd64. Preparing to unpack .../70-libpython3.13_3.13.5-2_amd64.deb ... Unpacking libpython3.13:amd64 (3.13.5-2) ... Selecting previously unselected package libpython3.13-dev:amd64. Preparing to unpack .../71-libpython3.13-dev_3.13.5-2_amd64.deb ... Unpacking libpython3.13-dev:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../72-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../73-python3.13-dev_3.13.5-2_amd64.deb ... Unpacking python3.13-dev (3.13.5-2) ... Preparing to unpack .../74-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../75-mount_2.41-5_amd64.deb ... Unpacking mount (2.41-5) over (2.38.1-5+deb12u3) ... Preparing to unpack .../76-gpgv_2.4.7-21+b3_amd64.deb ... Unpacking gpgv (2.4.7-21+b3) over (2.2.40-1.1) ... Setting up gpgv (2.4.7-21+b3) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52279 files and directories currently installed.) Preparing to unpack .../libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Preparing to unpack .../libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) over (2.3.3-1+b1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libidn2-0:amd64 (2.3.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52285 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) over (0.24.1-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52285 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) over (4.19.0-2+deb12u1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52285 files and directories currently installed.) Preparing to unpack .../usr-is-merged_39+nmu2_all.deb ... Unpacking usr-is-merged (39+nmu2) over (37~deb12u1) ... Setting up usr-is-merged (39+nmu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52286 files and directories currently installed.) Preparing to unpack .../00-mawk_1.3.4.20250131-1_amd64.deb ... Unpacking mawk (1.3.4.20250131-1) over (1.3.4.20200120-3.1) ... Selecting previously unselected package cpp-14-x86-64-linux-gnu. Preparing to unpack .../01-cpp-14-x86-64-linux-gnu_14.2.0-19_amd64.deb ... Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19) ... Preparing to unpack .../02-g++_4%3a14.2.0-1_amd64.deb ... Unpacking g++ (4:14.2.0-1) over (4:12.2.0-3) ... Preparing to unpack .../03-gcc_4%3a14.2.0-1_amd64.deb ... Unpacking gcc (4:14.2.0-1) over (4:12.2.0-3) ... Preparing to unpack .../04-cpp_4%3a14.2.0-1_amd64.deb ... Unpacking cpp (4:14.2.0-1) over (4:12.2.0-3) ... Selecting previously unselected package cpp-x86-64-linux-gnu. Preparing to unpack .../05-cpp-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package gcc-14-x86-64-linux-gnu. Preparing to unpack .../06-gcc-14-x86-64-linux-gnu_14.2.0-19_amd64.deb ... Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19) ... Selecting previously unselected package g++-14-x86-64-linux-gnu. Preparing to unpack .../07-g++-14-x86-64-linux-gnu_14.2.0-19_amd64.deb ... Unpacking g++-14-x86-64-linux-gnu (14.2.0-19) ... Selecting previously unselected package cpp-14. Preparing to unpack .../08-cpp-14_14.2.0-19_amd64.deb ... Unpacking cpp-14 (14.2.0-19) ... Selecting previously unselected package gcc-14. Preparing to unpack .../09-gcc-14_14.2.0-19_amd64.deb ... Unpacking gcc-14 (14.2.0-19) ... Selecting previously unselected package g++-14. Preparing to unpack .../10-g++-14_14.2.0-19_amd64.deb ... Unpacking g++-14 (14.2.0-19) ... Selecting previously unselected package gcc-x86-64-linux-gnu. Preparing to unpack .../11-gcc-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package g++-x86-64-linux-gnu. Preparing to unpack .../12-g++-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking g++-x86-64-linux-gnu (4:14.2.0-1) ... Preparing to unpack .../13-liblbfgsb0_3.0+dfsg.4-1+b2_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) over (3.0+dfsg.4-1) ... Preparing to unpack .../14-libss2_1.47.2-3+b3_amd64.deb ... Unpacking libss2:amd64 (1.47.2-3+b3) over (1.47.0-2) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu': Directory not empty Selecting previously unselected package xtl-dev. Preparing to unpack .../15-xtl-dev_0.7.7-1_all.deb ... Unpacking xtl-dev (0.7.7-1) ... Preparing to unpack .../16-libxsimd-dev_13.2.0-1_amd64.deb ... Unpacking libxsimd-dev:amd64 (13.2.0-1) over (8.1.0-7) ... Preparing to unpack .../17-mailcap_3.74_all.deb ... Unpacking mailcap (3.74) over (3.70+nmu1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../18-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Preparing to unpack .../19-python3-monotonic_1.6-3_all.deb ... Unpacking python3-monotonic (1.6-3) over (1.6-2) ... Preparing to unpack .../20-python3-fasteners_0.18-2_all.deb ... Unpacking python3-fasteners (0.18-2) over (0.17.3-2) ... Preparing to unpack .../21-python3-gast_0.6.0-1_all.deb ... Unpacking python3-gast (0.6.0-1) over (0.5.2-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../22-python3-more-itertools_10.7.0-1_all.deb ... Unpacking python3-more-itertools (10.7.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../23-python3-typing-extensions_4.13.2-1_all.deb ... Unpacking python3-typing-extensions (4.13.2-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../24-python3-typeguard_4.4.2-1_all.deb ... Unpacking python3-typeguard (4.4.2-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../25-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../26-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Preparing to unpack .../27-python3-pkg-resources_78.1.1-0.1_all.deb ... Unpacking python3-pkg-resources (78.1.1-0.1) over (66.1.1-1+deb12u1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../28-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../29-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../30-python3-setuptools_78.1.1-0.1_all.deb ... Unpacking python3-setuptools (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../31-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Preparing to unpack .../32-python3-networkx_3.2.1-5_all.deb ... Unpacking python3-networkx (3.2.1-5) over (2.8.8-1) ... Preparing to unpack .../33-python3-ply_3.11-9_all.deb ... Unpacking python3-ply (3.11-9) over (3.11-5) ... Preparing to unpack .../34-python3-pythran_0.17.0+ds-1_amd64.deb ... Unpacking python3-pythran (0.17.0+ds-1) over (0.11.0+ds-7) ... Preparing to unpack .../35-python3-tz_2025.2-3_all.deb ... Unpacking python3-tz (2025.2-3) over (2022.7.1-4) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../36-python3-pytz_2025.2-3_all.deb ... Unpacking python3-pytz (2025.2-3) ... Preparing to unpack .../37-python3-six_1.17.0-1_all.deb ... Unpacking python3-six (1.17.0-1) over (1.16.0-4) ... Preparing to unpack .../38-sgml-base_1.31+nmu1_all.deb ... Unpacking sgml-base (1.31+nmu1) over (1.31) ... Preparing to unpack .../39-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) over (0.18+nmu1) ... Setting up media-types (13.0.0) ... Installing new version of config file /etc/mime.types ... Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up fonts-lato (2.015-1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libtirpc-common (1.3.6+ds-1) ... Setting up fonts-lyx (2.4.3-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up binutils-common:amd64 (2.44-3) ... Setting up x11-common (1:7.7+24) ... Installing new version of config file /etc/X11/Xsession.d/20x11-common_process-args ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.23-2) ... Setting up linux-libc-dev (6.12.38-1) ... Setting up libctf-nobfd0:amd64 (2.44-3) ... Setting up libqhull-r8.0:amd64 (2020.2-6+b2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libsframe1:amd64 (2.44-3) ... Setting up libjansson4:amd64 (2.14-2+b3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up gcc-12-base:amd64 (12.4.0-5) ... Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 19 10:55:23 UTC 2025. Universal Time is now: Tue Aug 19 10:55:23 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up libblas3:amd64 (3.12.1-6) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libmpfr6:amd64 (4.2.2-1) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libquadmath0:amd64 (14.2.0-19) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.48-1) ... Setting up libmpc3:amd64 (1.3.1-1+b3) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Setting up libatomic1:amd64 (14.2.0-19) ... Setting up libss2:amd64 (1.47.2-3+b3) ... Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... Setting up fonts-dejavu-core (2.37-8) ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-dejavu-lgc-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-dejavu-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/57-dejavu-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/58-dejavu-lgc-sans-mono.conf ... Setting up xtl-dev (0.7.7-1) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up logsave (1.47.2-3+b3) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libubsan1:amd64 (14.2.0-19) ... Setting up mount (2.41-5) ... Setting up perl-modules-5.40 (5.40.1-6) ... Setting up libhwasan0:amd64 (14.2.0-19) ... Setting up libcrypt-dev:amd64 (1:4.4.38-1) ... Setting up libtiff6:amd64 (4.7.0-3) ... Setting up libasan8:amd64 (14.2.0-19) ... Setting up procps (2:4.0.4-9) ... Installing new version of config file /etc/sysctl.d/README.sysctl ... Removing obsolete conffile /etc/sysctl.conf ... Setting up libopenjp2-7:amd64 (2.5.3-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up mawk (1.3.4.20250131-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libtsan2:amd64 (14.2.0-19) ... Setting up libbinutils:amd64 (2.44-3) ... Setting up libisl23:amd64 (0.27-1) ... Setting up libc-dev-bin (2.41-12) ... Setting up python-matplotlib-data (3.10.1+dfsg1-4) ... Installing new version of config file /etc/matplotlibrc ... Setting up openssl (3.5.1-1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libcc1-0:amd64 (14.2.0-19) ... Setting up liblsan0:amd64 (14.2.0-19) ... Setting up libitm1:amd64 (14.2.0-19) ... Setting up libctf0:amd64 (2.44-3) ... Setting up liblapack3:amd64 (3.12.1-6) ... Setting up cpp-12 (12.4.0-5) ... Setting up libopenblas0-pthread:amd64 (0.3.29+ds-3) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up e2fsprogs (1.47.2-3+b3) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/mke2fs.conf ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt, it does not contain exactly one certificate or CRL 23 added, 13 removed; done. Setting up libxsimd-dev:amd64 (13.2.0-1) ... Setting up perl (5.40.1-6) ... Setting up libglib2.0-0t64:amd64 (2.84.3-1) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.44-3) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgcc-12-dev:amd64 (12.4.0-5) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-19) ... Setting up cpp-14 (14.2.0-19) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libopenblas0:amd64 (0.3.29+ds-3) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.2) ... Setting up libc6-dev:amd64 (2.41-12) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libgcc-14-dev:amd64 (14.2.0-19) ... Setting up libstdc++-14-dev:amd64 (14.2.0-19) ... Setting up mailcap (3.74) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up binutils-x86-64-linux-gnu (2.44-3) ... Setting up libpython3.13:amd64 (3.13.5-2) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.29+ds-3) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libboost1.83-dev:amd64 (1.83.0-4.2) ... Setting up libstdc++-12-dev:amd64 (12.4.0-5) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up python3.13 (3.13.5-2) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up python3 (3.13.5-1) ... Setting up binutils (2.44-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.5-2) ... Setting up python3-mda-xdrlib (0.2.0-3) ... Setting up python3-platformdirs (4.3.7-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up python3-monotonic (1.6-3) ... Setting up python3-fs (2.4.16-7) ... Setting up python3-six (1.17.0-1) ... Setting up libopenblas-dev:amd64 (0.3.29+ds-3) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-packaging (25.0-1) ... Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up gcc-12 (12.4.0-5) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-fasteners (0.18-2) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up python3-looseversion (1.3.0-3) ... Setting up python3-lxml:amd64 (5.4.0-1) ... Setting up cpp (4:14.2.0-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-1+b1) ... Setting up python3-msgpack (1.0.3-3+b4) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-mpmath (1.3.0-1) ... Setting up g++-12 (12.4.0-5) ... Setting up python3-mrcfile (1.5.4-2) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-sympy (1.13.3-5) ... Setting up python3-attr (25.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-filelock (3.18.0-1) ... Setting up python3-scipy (1.15.3-1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-joblib (1.4.2-4) ... Setting up python3-lz4 (4.4.0+dfsg-2) ... Setting up python3-citeproc (0.8.2-1) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-ply (3.11-9) ... Setting up python3-tqdm (4.67.1-5) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-gast (0.6.0-1) ... Setting up python3-all (3.13.5-1) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up python3-gsd (3.4.2-2+b1) ... Setting up python3-pytz (2025.2-3) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-tz (2025.2-3) ... Setting up gcc-14 (14.2.0-19) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-griddataformats (1.0.2-2) ... Setting up python3-pil.imagetk:amd64 (11.1.0-5+b1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up libpython3.13-dev:amd64 (3.13.5-2) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-reportlab (4.3.1-1) ... Setting up libnsl-dev:amd64 (1.3.0-3+b3) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up g++-14 (14.2.0-19) ... Setting up python3-biopython (1.85+dfsg-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up libpython3-dev:amd64 (3.13.5-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-duecredit (0.10.2-2) ... Setting up python3.13-dev (3.13.5-2) ... Setting up python3-networkx (3.2.1-5) ... Setting up gcc (4:14.2.0-1) ... Setting up libpython3-all-dev:amd64 (3.13.5-1) ... Setting up python3-dev (3.13.5-1) ... Setting up g++ (4:14.2.0-1) ... Setting up python3-all-dev (3.13.5-1) ... Setting up python3-pythran (0.17.0+ds-1) ... Setting up python3-fonttools (4.57.0-1) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-4) ... Setting up python3-mdanalysis (2.9.0-12) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for sgml-base (1.31+nmu1) ... 1m40.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-yf', 'dist-upgrade'] 1m40.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m41.4s DUMP: 8fc0def95551deb38dc214d6c9cce720 - 1m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'show', '--no-all-versions', 'python3-mdanalysis'] 1m41.5s DUMP: Package: python3-mdanalysis Source: mdanalysis Version: 2.9.0-12 Installed-Size: 24691 Maintainer: Debichem Team Architecture: amd64 Depends: python3-duecredit, python3-biopython (>= 1.80), python3 (<< 3.14), python3 (>= 3.13~), python3-filelock, python3-griddataformats, python3-joblib, python3-matplotlib, python3-mda-xdrlib, python3-mmtf, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-scipy, python3-threadpoolctl, python3-tqdm, python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11) Recommends: python3-sklearn Suggests: python-mdanalysis-doc Description-en: analyse molecular dynamics files and trajectories MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists. . MDAnalysis allows one to read particle-based trajectories (including individual coordinate frames such as biomolecules in the PDB format) and access the atomic coordinates through NumPy arrays. This provides a flexible and relatively fast framework for complex analysis tasks. In addition, powerful atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. . It works with a wide range of popular simulation packages including Gromacs, Amber, NAMD, CHARMM, DL_Poly, HooMD, LAMMPS and many others ?? see the lists of supported trajectory formats and topology formats. MDAnalysis also includes widely used analysis algorithms in the MDAnalysis.analysis module. . The MDAnalysis project uses an open governance model and is fiscally sponsored by NumFOCUS. . This package installs the library for Python 3. Description-md5: 9d4e18df399b20b80dcfdf83cc426a35 Homepage: https://www.mdanalysis.org/ Section: python Priority: optional Filename: pool/main/m/mdanalysis/python3-mdanalysis_2.9.0-12_amd64.deb Size: 4203256 MD5sum: 3680ee0835e0925da5b223599053549c SHA256: 71525c9a3b91dc3fce89b4aff6727875367544710e81882f39ff4adca5e5dde0 1m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'show', '--no-all-versions', 'python3-mdanalysis'] 1m41.5s INFO: apt-cache knows about the following packages: python3-mdanalysis 1m41.5s INFO: Running scripts pre_install 1m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 1m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 1m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 1m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 1m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 1m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 1m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 1m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 1m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 1m41.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 1m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 1m41.6s DUMP: python3-mdanalysis: Installed: 2.9.0-12 Candidate: 2.9.0-12 Version table: *** 2.9.0-12 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 1m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 1m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis'] 1m41.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-mdanalysis is already the newest version (2.9.0-12). The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libtirpc-common libtirpc-dev libtirpc3t64 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-autocommand python3-beniget python3-fasteners python3-gast python3-gsd python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-monotonic python3-more-itertools python3-networkx python3-pkg-resources python3-ply python3-pythran python3-pytz python3-setuptools python3-six python3-typeguard python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis'] 1m41.8s INFO: Running scripts post_install 1m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 1m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 1m41.8s INFO: Running scripts post_distupgrade 1m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_exceptions'] 1m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_exceptions'] 1m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_zz_backports'] 1m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_zz_backports'] 1m41.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 1m43.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 1m43.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp9drck01o to testing 1m43.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 1m43.6s INFO: Running scripts pre_distupgrade 1m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_exceptions'] 1m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_exceptions'] 1m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'update'] 1m45.0s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [146 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9803 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6539 kB] Fetched 16.5 MB in 1s (17.1 MB/s) Reading package lists... 1m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'update'] 1m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-yf', 'dist-upgrade'] 1m53.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsframe1 libtirpc-common libtirpc-dev libtirpc3t64 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-autocommand python3-beniget python3-fasteners python3-gast python3-gsd python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-monotonic python3-more-itertools python3-networkx python3-pkg-resources python3-ply python3-pythran python3-pytz python3-setuptools python3-six python3-typeguard python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: binutils-gold binutils-gold-x86-64-linux-gnu gcc-15-base libsframe2 libxml2-16 The following packages will be upgraded: apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-12 g++-12 gcc-12 gcc-12-base gpgv libapt-pkg7.0 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcc1-0 libctf-nobfd0 libctf0 libgcc-12-dev libgcc-s1 libgcrypt20 libgfortran5 libgomp1 libgpg-error0 libgprofng0 libhwasan0 libidn2-0 libitm1 liblastlog2-2 liblsan0 libmount1 libopenjp2-7 libpng16-16t64 libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libquadmath0 libraqm0 libsmartcols1 libstdc++-12-dev libstdc++6 libtsan2 libubsan1 libuuid1 login mount python3-contourpy python3-cycler python3-freetype python3-gsd python3-lxml python3-pythran python3-reportlab python3-typing-extensions python3.13 python3.13-dev python3.13-minimal python3.13-tk tzdata util-linux util-linux-extra 65 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 88.8 MB of archives. After this operation, 12.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.1-1 [110 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.0.5-1 [13.5 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.0.5-1 [59.4 kB] Get:5 http://deb.debian.org/debian forky/main amd64 util-linux-extra amd64 2.41.1-1 [301 kB] Get:6 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.1-1 [28.6 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.1-1 [37.7 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.1-1 [171 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.1-1 [209 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.1-1 [143 kB] Get:11 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.1-1 [1236 kB] Get:12 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.1-1 [162 kB] Get:13 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-1 [52.0 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-1 [71.7 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-1 [736 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.4 [1182 kB] Get:17 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.4 [1478 kB] Get:18 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.1-1 [115 kB] Get:19 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.6-1 [504 kB] Get:20 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.6-1 [761 kB] Get:21 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.6-1 [2218 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.6-1 [5273 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.6-1 [2162 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.6-1 [1959 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.6-1 [864 kB] Get:26 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libgprofng0 amd64 2.45-3 [809 kB] Get:28 http://deb.debian.org/debian forky/main amd64 libctf0 amd64 2.45-3 [89.7 kB] Get:29 http://deb.debian.org/debian forky/main amd64 libctf-nobfd0 amd64 2.45-3 [157 kB] Get:30 http://deb.debian.org/debian forky/main amd64 binutils-x86-64-linux-gnu amd64 2.45-3 [1043 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libbinutils amd64 2.45-3 [539 kB] Get:32 http://deb.debian.org/debian forky/main amd64 binutils amd64 2.45-3 [266 kB] Get:33 http://deb.debian.org/debian forky/main amd64 binutils-common amd64 2.45-3 [2558 kB] Get:34 http://deb.debian.org/debian forky/main amd64 libsframe2 amd64 2.45-3 [79.3 kB] Get:35 http://deb.debian.org/debian forky/main amd64 binutils-gold-x86-64-linux-gnu amd64 2.44-2 [1197 kB] Get:36 http://deb.debian.org/debian forky/main amd64 binutils-gold amd64 2.44-2 [202 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 15.2.0-1 [140 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libitm1 amd64 15.2.0-1 [26.5 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 15.2.0-1 [9492 B] Get:40 http://deb.debian.org/debian forky/main amd64 libasan8 amd64 15.2.0-1 [2780 kB] Get:41 http://deb.debian.org/debian forky/main amd64 liblsan0 amd64 15.2.0-1 [1248 kB] Get:42 http://deb.debian.org/debian forky/main amd64 g++-12 amd64 12.5.0-1 [10.8 MB] Get:43 http://deb.debian.org/debian forky/main amd64 gcc-12 amd64 12.5.0-1 [19.6 MB] Get:44 http://deb.debian.org/debian forky/main amd64 libstdc++-12-dev amd64 12.5.0-1 [2358 kB] Get:45 http://deb.debian.org/debian forky/main amd64 libgcc-12-dev amd64 12.5.0-1 [2433 kB] Get:46 http://deb.debian.org/debian forky/main amd64 libtsan2 amd64 15.2.0-1 [2492 kB] Get:47 http://deb.debian.org/debian forky/main amd64 libubsan1 amd64 15.2.0-1 [1108 kB] Get:48 http://deb.debian.org/debian forky/main amd64 libquadmath0 amd64 15.2.0-1 [146 kB] Get:49 http://deb.debian.org/debian forky/main amd64 cpp-12 amd64 12.5.0-1 [9890 kB] Get:50 http://deb.debian.org/debian forky/main amd64 gcc-12-base amd64 12.5.0-1 [44.8 kB] Get:51 http://deb.debian.org/debian forky/main amd64 libcc1-0 amd64 15.2.0-1 [42.7 kB] Get:52 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get:53 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get:54 http://deb.debian.org/debian forky/main amd64 gpgv amd64 2.4.8-2 [241 kB] Get:55 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-1 [862 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libhwasan0 amd64 15.2.0-1 [1538 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-3 [109 kB] Get:58 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get:59 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:60 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get:62 http://deb.debian.org/debian forky/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get:63 http://deb.debian.org/debian forky/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get:64 http://deb.debian.org/debian forky/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get:65 http://deb.debian.org/debian forky/main amd64 python3-gsd amd64 4.0.0-1 [209 kB] Get:66 http://deb.debian.org/debian forky/main amd64 python3-lxml amd64 5.4.0-1+b1 [1297 kB] Get:67 http://deb.debian.org/debian forky/main amd64 python3-pythran amd64 0.17.0+ds-2 [457 kB] Get:68 http://deb.debian.org/debian forky/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get:69 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.14.1-1 [91.3 kB] Get:70 http://deb.debian.org/debian forky/main amd64 python3.13-tk amd64 3.13.6-1 [108 kB] Preconfiguring packages ... Fetched 88.8 MB in 1s (92.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55864 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55863 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.1-1_amd64.deb ... Unpacking bsdutils (1:2.41.1-1) over (1:2.41-5) ... Setting up bsdutils (1:2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55863 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.5-1_all.deb ... Unpacking libaudit-common (1:4.0.5-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55863 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.5-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.5-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55862 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.41.1-1_amd64.deb ... Leaving 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.41.1-1) over (2.41-5) ... Preparing to unpack .../liblastlog2-2_2.41.1-1_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.1-1) over (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55862 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.1-1_amd64.deb ... Unpacking libuuid1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libuuid1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55862 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.1-1_amd64.deb ... Unpacking libblkid1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libblkid1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55862 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.1-1_amd64.deb ... Unpacking libmount1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libmount1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55862 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.1-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.1-1) over (2.41-5) ... Setting up libsmartcols1:amd64 (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55862 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.1-1_amd64.deb ... Unpacking util-linux (2.41.1-1) over (2.41-5) ... Setting up util-linux (2.41.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55863 files and directories currently installed.) Preparing to unpack .../mount_2.41.1-1_amd64.deb ... Unpacking mount (2.41.1-1) over (2.41-5) ... Selecting previously unselected package gcc-15-base:amd64. Preparing to unpack .../gcc-15-base_15.2.0-1_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-1) ... Setting up gcc-15-base:amd64 (15.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55868 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-1_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-1) over (14.2.0-19) ... Setting up libgcc-s1:amd64 (15.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55868 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-1_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-1) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55868 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.4_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.4) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55868 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.4_amd64.deb ... Unpacking apt (3.1.4) over (3.0.3) ... Setting up apt (3.1.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55866 files and directories currently installed.) Preparing to unpack .../00-login_1%3a4.16.0-2+really2.41.1-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.1-1) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../01-python3.13-dev_3.13.6-1_amd64.deb ... Unpacking python3.13-dev (3.13.6-1) over (3.13.5-2) ... Preparing to unpack .../02-python3.13_3.13.6-1_amd64.deb ... Unpacking python3.13 (3.13.6-1) over (3.13.5-2) ... Preparing to unpack .../03-python3.13-minimal_3.13.6-1_amd64.deb ... Unpacking python3.13-minimal (3.13.6-1) over (3.13.5-2) ... Preparing to unpack .../04-libpython3.13-dev_3.13.6-1_amd64.deb ... Unpacking libpython3.13-dev:amd64 (3.13.6-1) over (3.13.5-2) ... Preparing to unpack .../05-libpython3.13_3.13.6-1_amd64.deb ... Unpacking libpython3.13:amd64 (3.13.6-1) over (3.13.5-2) ... Preparing to unpack .../06-libpython3.13-stdlib_3.13.6-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.6-1) over (3.13.5-2) ... Preparing to unpack .../07-libpython3.13-minimal_3.13.6-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.6-1) over (3.13.5-2) ... Preparing to unpack .../08-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4) ... Preparing to unpack .../09-libgprofng0_2.45-3_amd64.deb ... Unpacking libgprofng0:amd64 (2.45-3) over (2.44-3) ... Preparing to unpack .../10-libctf0_2.45-3_amd64.deb ... Unpacking libctf0:amd64 (2.45-3) over (2.44-3) ... Preparing to unpack .../11-libctf-nobfd0_2.45-3_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.45-3) over (2.44-3) ... Preparing to unpack .../12-binutils-x86-64-linux-gnu_2.45-3_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.45-3) over (2.44-3) ... Preparing to unpack .../13-libbinutils_2.45-3_amd64.deb ... Unpacking libbinutils:amd64 (2.45-3) over (2.44-3) ... Preparing to unpack .../14-binutils_2.45-3_amd64.deb ... Unpacking binutils (2.45-3) over (2.44-3) ... Preparing to unpack .../15-binutils-common_2.45-3_amd64.deb ... Unpacking binutils-common:amd64 (2.45-3) over (2.44-3) ... Selecting previously unselected package libsframe2:amd64. Preparing to unpack .../16-libsframe2_2.45-3_amd64.deb ... Unpacking libsframe2:amd64 (2.45-3) ... Selecting previously unselected package binutils-gold-x86-64-linux-gnu. Preparing to unpack .../17-binutils-gold-x86-64-linux-gnu_2.44-2_amd64.deb ... Unpacking binutils-gold-x86-64-linux-gnu (2.44-2) ... Selecting previously unselected package binutils-gold. Preparing to unpack .../18-binutils-gold_2.44-2_amd64.deb ... Unpacking binutils-gold (2.44-2) ... Preparing to unpack .../19-libgomp1_15.2.0-1_amd64.deb ... Unpacking libgomp1:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../20-libitm1_15.2.0-1_amd64.deb ... Unpacking libitm1:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../21-libatomic1_15.2.0-1_amd64.deb ... Unpacking libatomic1:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../22-libasan8_15.2.0-1_amd64.deb ... Unpacking libasan8:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../23-liblsan0_15.2.0-1_amd64.deb ... Unpacking liblsan0:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../24-g++-12_12.5.0-1_amd64.deb ... Unpacking g++-12 (12.5.0-1) over (12.4.0-5) ... Preparing to unpack .../25-gcc-12_12.5.0-1_amd64.deb ... Unpacking gcc-12 (12.5.0-1) over (12.4.0-5) ... Preparing to unpack .../26-libstdc++-12-dev_12.5.0-1_amd64.deb ... Unpacking libstdc++-12-dev:amd64 (12.5.0-1) over (12.4.0-5) ... Preparing to unpack .../27-libgcc-12-dev_12.5.0-1_amd64.deb ... Unpacking libgcc-12-dev:amd64 (12.5.0-1) over (12.4.0-5) ... Preparing to unpack .../28-libtsan2_15.2.0-1_amd64.deb ... Unpacking libtsan2:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../29-libubsan1_15.2.0-1_amd64.deb ... Unpacking libubsan1:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../30-libquadmath0_15.2.0-1_amd64.deb ... Unpacking libquadmath0:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../31-cpp-12_12.5.0-1_amd64.deb ... Unpacking cpp-12 (12.5.0-1) over (12.4.0-5) ... Preparing to unpack .../32-gcc-12-base_12.5.0-1_amd64.deb ... Unpacking gcc-12-base:amd64 (12.5.0-1) over (12.4.0-5) ... Preparing to unpack .../33-libcc1-0_15.2.0-1_amd64.deb ... Unpacking libcc1-0:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../34-libgpg-error0_1.55-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.55-2) over (1.51-4) ... Preparing to unpack .../35-libgcrypt20_1.11.2-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.11.2-2) over (1.11.0-7) ... Preparing to unpack .../36-gpgv_2.4.8-2_amd64.deb ... Unpacking gpgv (2.4.8-2) over (2.4.7-21+b3) ... Preparing to unpack .../37-libgfortran5_15.2.0-1_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../38-libhwasan0_15.2.0-1_amd64.deb ... Unpacking libhwasan0:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../39-libidn2-0_2.3.8-3_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-3) over (2.3.8-2) ... Preparing to unpack .../40-libopenjp2-7_2.5.3-2.1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.3-2.1) over (2.5.3-2) ... Preparing to unpack .../41-libpng16-16t64_1.6.50-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.50-1) over (1.6.48-1) ... Preparing to unpack .../42-libraqm0_0.10.3-1_amd64.deb ... Unpacking libraqm0:amd64 (0.10.3-1) over (0.10.2-1) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../43-libxml2-16_2.14.5+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Preparing to unpack .../44-python3-contourpy_1.3.1-2_amd64.deb ... Unpacking python3-contourpy (1.3.1-2) over (1.3.1-1+b1) ... Preparing to unpack .../45-python3-cycler_0.12.1-2_all.deb ... Unpacking python3-cycler (0.12.1-2) over (0.12.1-1) ... Preparing to unpack .../46-python3-freetype_2.5.1-2_all.deb ... Unpacking python3-freetype (2.5.1-2) over (2.5.1-1) ... Preparing to unpack .../47-python3-gsd_4.0.0-1_amd64.deb ... Unpacking python3-gsd (4.0.0-1) over (3.4.2-2+b1) ... Preparing to unpack .../48-python3-lxml_5.4.0-1+b1_amd64.deb ... Unpacking python3-lxml:amd64 (5.4.0-1+b1) over (5.4.0-1) ... Preparing to unpack .../49-python3-pythran_0.17.0+ds-2_amd64.deb ... Unpacking python3-pythran (0.17.0+ds-2) over (0.17.0+ds-1) ... Preparing to unpack .../50-python3-reportlab_4.4.3-1_all.deb ... Unpacking python3-reportlab (4.4.3-1) over (4.3.1-1) ... Preparing to unpack .../51-python3-typing-extensions_4.14.1-1_all.deb ... Unpacking python3-typing-extensions (4.14.1-1) over (4.13.2-1) ... Preparing to unpack .../52-python3.13-tk_3.13.6-1_amd64.deb ... Unpacking python3.13-tk (3.13.6-1) over (3.13.5-2) ... Setting up binutils-gold-x86-64-linux-gnu (2.44-2) ... Setting up libgpg-error0:amd64 (1.55-2) ... Setting up binutils-gold (2.44-2) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Setting up libsframe2:amd64 (2.45-3) ... Setting up binutils-common:amd64 (2.45-3) ... Setting up libctf-nobfd0:amd64 (2.45-3) ... Setting up libgcrypt20:amd64 (1.11.2-2) ... Setting up python3-gsd (4.0.0-1) ... Setting up libidn2-0:amd64 (2.3.8-3) ... Setting up libgomp1:amd64 (15.2.0-1) ... Setting up python3-freetype (2.5.1-2) ... Setting up python3.13-tk (3.13.6-1) ... Setting up gcc-12-base:amd64 (12.5.0-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 19 10:55:53 UTC 2025. Universal Time is now: Tue Aug 19 10:55:53 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.6-1) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up libquadmath0:amd64 (15.2.0-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up libatomic1:amd64 (15.2.0-1) ... Setting up python3-typing-extensions (4.14.1-1) ... Setting up libgfortran5:amd64 (15.2.0-1) ... Setting up python3-reportlab (4.4.3-1) ... Setting up libubsan1:amd64 (15.2.0-1) ... Setting up mount (2.41.1-1) ... Setting up python3-pythran (0.17.0+ds-2) ... Setting up libhwasan0:amd64 (15.2.0-1) ... Setting up python3-lxml:amd64 (5.4.0-1+b1) ... Setting up gpgv (2.4.8-2) ... Setting up libasan8:amd64 (15.2.0-1) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up python3.13-minimal (3.13.6-1) ... Setting up python3-contourpy (1.3.1-2) ... Setting up libtsan2:amd64 (15.2.0-1) ... Setting up libbinutils:amd64 (2.45-3) ... Setting up libpython3.13-stdlib:amd64 (3.13.6-1) ... Setting up libcc1-0:amd64 (15.2.0-1) ... Setting up liblsan0:amd64 (15.2.0-1) ... Setting up libitm1:amd64 (15.2.0-1) ... Setting up util-linux-extra (2.41.1-1) ... Setting up login (1:4.16.0-2+really2.41.1-1) ... Setting up libctf0:amd64 (2.45-3) ... Setting up libpython3.13:amd64 (3.13.6-1) ... Setting up cpp-12 (12.5.0-1) ... Setting up python3.13 (3.13.6-1) ... Setting up libgprofng0:amd64 (2.45-3) ... Setting up libpython3.13-dev:amd64 (3.13.6-1) ... Setting up libgcc-12-dev:amd64 (12.5.0-1) ... Setting up binutils-x86-64-linux-gnu (2.45-3) ... Setting up libstdc++-12-dev:amd64 (12.5.0-1) ... Setting up python3.13-dev (3.13.6-1) ... Setting up binutils (2.45-3) ... Setting up gcc-12 (12.5.0-1) ... Setting up g++-12 (12.5.0-1) ... Processing triggers for mailcap (3.74) ... Processing triggers for libc-bin (2.41-12) ... 1m53.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-yf', 'dist-upgrade'] 1m53.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m54.4s DUMP: dd74c5b074092add00a5d442479f1935 - 1m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'show', '--no-all-versions', 'python3-mdanalysis'] 1m54.5s DUMP: Package: python3-mdanalysis Source: mdanalysis Version: 2.9.0-12 Installed-Size: 24691 Maintainer: Debichem Team Architecture: amd64 Depends: python3-duecredit, python3-biopython (>= 1.80), python3 (<< 3.14), python3 (>= 3.13~), python3-filelock, python3-griddataformats, python3-joblib, python3-matplotlib, python3-mda-xdrlib, python3-mmtf, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-scipy, python3-threadpoolctl, python3-tqdm, python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11) Recommends: python3-sklearn Suggests: python-mdanalysis-doc Description-en: analyse molecular dynamics files and trajectories MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists. . MDAnalysis allows one to read particle-based trajectories (including individual coordinate frames such as biomolecules in the PDB format) and access the atomic coordinates through NumPy arrays. This provides a flexible and relatively fast framework for complex analysis tasks. In addition, powerful atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. . It works with a wide range of popular simulation packages including Gromacs, Amber, NAMD, CHARMM, DL_Poly, HooMD, LAMMPS and many others ?? see the lists of supported trajectory formats and topology formats. MDAnalysis also includes widely used analysis algorithms in the MDAnalysis.analysis module. . The MDAnalysis project uses an open governance model and is fiscally sponsored by NumFOCUS. . This package installs the library for Python 3. Description-md5: 9d4e18df399b20b80dcfdf83cc426a35 Homepage: https://www.mdanalysis.org/ Section: python Priority: optional Filename: pool/main/m/mdanalysis/python3-mdanalysis_2.9.0-12_amd64.deb Size: 4203256 MD5sum: 3680ee0835e0925da5b223599053549c SHA256: 71525c9a3b91dc3fce89b4aff6727875367544710e81882f39ff4adca5e5dde0 1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'show', '--no-all-versions', 'python3-mdanalysis'] 1m54.5s INFO: apt-cache knows about the following packages: python3-mdanalysis 1m54.5s INFO: Running scripts pre_install 1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 1m54.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 1m54.6s DUMP: python3-mdanalysis: Installed: 2.9.0-12 Candidate: 2.9.0-12 Version table: *** 2.9.0-12 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 1m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 1m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis'] 1m54.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-mdanalysis is already the newest version (2.9.0-12). The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsframe1 libtirpc-common libtirpc-dev libtirpc3t64 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-autocommand python3-beniget python3-fasteners python3-gast python3-gsd python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-monotonic python3-more-itertools python3-networkx python3-pkg-resources python3-ply python3-pythran python3-pytz python3-setuptools python3-six python3-typeguard python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis'] 1m54.8s INFO: Running scripts post_install 1m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 1m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 1m54.8s INFO: Running scripts post_distupgrade 1m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_exceptions'] 1m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_exceptions'] 1m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_zz_backports'] 1m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_zz_backports'] 1m54.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 1m56.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 1m56.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp9drck01o to sid 1m56.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m56.6s INFO: Running scripts pre_distupgrade 1m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m56.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_exceptions'] 1m56.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_exceptions'] 1m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m56.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m56.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m56.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'update'] 1m58.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [216 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7421 kB] Fetched 17.8 MB in 2s (11.5 MB/s) Reading package lists... 1m58.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'update'] 1m58.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-yf', 'dist-upgrade'] 2m6.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsframe1 libtirpc-common libtirpc-dev libtirpc3t64 libxml2 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-autocommand python3-beniget python3-fasteners python3-gast python3-gsd python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-monotonic python3-more-itertools python3-networkx python3-pkg-resources python3-ply python3-pythran python3-pytz python3-setuptools python3-six python3-typeguard python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu cpp-14 cpp-14-x86-64-linux-gnu g++-14 g++-14-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu init-system-helpers libbinutils libctf-nobfd0 libctf0 libgcc-14-dev libglib2.0-0t64 libgprofng0 libgraphite2-3 libicu72 libidn2-0 libsframe2 libssl3t64 libstdc++-14-dev libsystemd0 libtcl8.6 libtk8.6 libudev1 libxml2 libxslt1.1 openssl openssl-provider-legacy python3-appdirs python3-requests python3-sympy python3-typeguard python3-urllib3 sphinx-rtd-theme-common 37 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 80.3 MB of archives. After this operation, 2851 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:2 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.2-1 [307 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.2-1 [2438 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 258~rc2-2 [464 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 258~rc2-2 [156 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.45-4 [810 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.45-4 [89.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.45-4 [157 kB] Get:9 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.45-4 [1042 kB] Get:10 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.45-4 [266 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.45-4 [539 kB] Get:12 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.45-4 [2556 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libsframe2 amd64 2.45-4 [79.5 kB] Get:14 http://deb.debian.org/debian sid/main amd64 g++-14 amd64 14.3.0-5 [28.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 gcc-14 amd64 14.3.0-5 [554 kB] Get:16 http://deb.debian.org/debian sid/main amd64 cpp-14 amd64 14.3.0-5 [1276 B] Get:17 http://deb.debian.org/debian sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.3.0-5 [12.1 MB] Get:18 http://deb.debian.org/debian sid/main amd64 gcc-14-x86-64-linux-gnu amd64 14.3.0-5 [21.4 MB] Get:19 http://deb.debian.org/debian sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.3.0-5 [11.0 MB] Get:20 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.3.0-5 [2651 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.3.0-5 [2671 kB] Get:22 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.3.0-5 [51.5 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-3 [75.1 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.2 [698 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get:31 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get:32 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:33 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get:34 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.4+dfsg-1 [72.4 kB] Get:35 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get:37 http://deb.debian.org/debian sid/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Fetched 80.3 MB in 1s (99.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55919 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.68) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55920 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.2-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.2-1) over (3.5.1-1) ... Setting up openssl-provider-legacy (3.5.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55920 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.2-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.2-1) over (3.5.1-1) ... Setting up libssl3t64:amd64 (3.5.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55920 files and directories currently installed.) Preparing to unpack .../libsystemd0_258~rc2-2_amd64.deb ... Unpacking libsystemd0:amd64 (258~rc2-2) over (257.7-1) ... Setting up libsystemd0:amd64 (258~rc2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55920 files and directories currently installed.) Preparing to unpack .../libudev1_258~rc2-2_amd64.deb ... Unpacking libudev1:amd64 (258~rc2-2) over (257.7-1) ... Setting up libudev1:amd64 (258~rc2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55920 files and directories currently installed.) Preparing to unpack .../00-libgprofng0_2.45-4_amd64.deb ... Unpacking libgprofng0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../01-libctf0_2.45-4_amd64.deb ... Unpacking libctf0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../02-libctf-nobfd0_2.45-4_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../03-binutils-x86-64-linux-gnu_2.45-4_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.45-4) over (2.45-3) ... Preparing to unpack .../04-binutils_2.45-4_amd64.deb ... Unpacking binutils (2.45-4) over (2.45-3) ... Preparing to unpack .../05-libbinutils_2.45-4_amd64.deb ... Unpacking libbinutils:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../06-binutils-common_2.45-4_amd64.deb ... Unpacking binutils-common:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../07-libsframe2_2.45-4_amd64.deb ... Unpacking libsframe2:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../08-g++-14_14.3.0-5_amd64.deb ... Unpacking g++-14 (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../09-gcc-14_14.3.0-5_amd64.deb ... Unpacking gcc-14 (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../10-cpp-14_14.3.0-5_amd64.deb ... Unpacking cpp-14 (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../11-g++-14-x86-64-linux-gnu_14.3.0-5_amd64.deb ... Unpacking g++-14-x86-64-linux-gnu (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../12-gcc-14-x86-64-linux-gnu_14.3.0-5_amd64.deb ... Unpacking gcc-14-x86-64-linux-gnu (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../13-cpp-14-x86-64-linux-gnu_14.3.0-5_amd64.deb ... Unpacking cpp-14-x86-64-linux-gnu (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../14-libstdc++-14-dev_14.3.0-5_amd64.deb ... Unpacking libstdc++-14-dev:amd64 (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../15-libgcc-14-dev_14.3.0-5_amd64.deb ... Unpacking libgcc-14-dev:amd64 (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../16-gcc-14-base_14.3.0-5_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../17-libglib2.0-0t64_2.84.4-3_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.84.4-3) over (2.84.3-1) ... Preparing to unpack .../18-libgraphite2-3_1.3.14-3_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-3) over (1.3.14-2+b1) ... Preparing to unpack .../19-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) over (72.1-3) ... Preparing to unpack .../20-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) over (2.3.8-3) ... Preparing to unpack .../21-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) over (8.6.16+dfsg-1) ... Preparing to unpack .../22-libtk8.6_8.6.17-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.17-1) over (8.6.16-1) ... Preparing to unpack .../23-libxml2_2.12.7+dfsg+really2.9.14-2.2_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.2) over (2.12.7+dfsg+really2.9.14-2.1) ... Preparing to unpack .../24-libxslt1.1_1.1.43-0.2_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.43-0.2) over (1.1.35-1.2) ... Preparing to unpack .../25-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) over (3.5.1-1) ... Preparing to unpack .../26-python3-appdirs_1.4.4-4_all.deb ... Unpacking python3-appdirs (1.4.4-4) over (1.4.4-3) ... Preparing to unpack .../27-python3-urllib3_2.5.0-1_all.deb ... Unpacking python3-urllib3 (2.5.0-1) over (2.3.0-3) ... Preparing to unpack .../28-python3-requests_2.32.4+dfsg-1_all.deb ... Unpacking python3-requests (2.32.4+dfsg-1) over (2.32.3+dfsg-5) ... Preparing to unpack .../29-python3-sympy_1.14.0-2_all.deb ... Unpacking python3-sympy (1.14.0-2) over (1.13.3-5) ... Preparing to unpack .../30-python3-typeguard_4.4.4-1_all.deb ... Unpacking python3-typeguard (4.4.4-1) over (4.4.2-1) ... Preparing to unpack .../31-sphinx-rtd-theme-common_3.0.2+dfsg-3_all.deb ... Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-3) over (3.0.2+dfsg-2) ... Setting up libgraphite2-3:amd64 (1.3.14-3) ... Setting up python3-sympy (1.14.0-2) ... Setting up libicu72:amd64 (72.1-6) ... Setting up gcc-14-base:amd64 (14.3.0-5) ... Setting up libsframe2:amd64 (2.45-4) ... Setting up python3-typeguard (4.4.4-1) ... Setting up binutils-common:amd64 (2.45-4) ... Setting up libctf-nobfd0:amd64 (2.45-4) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... Setting up cpp-14-x86-64-linux-gnu (14.3.0-5) ... Setting up cpp-14 (14.3.0-5) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up libxslt1.1:amd64 (1.1.43-0.2) ... Setting up libgcc-14-dev:amd64 (14.3.0-5) ... Setting up libbinutils:amd64 (2.45-4) ... Setting up openssl (3.5.2-1) ... Setting up libstdc++-14-dev:amd64 (14.3.0-5) ... Setting up python3-appdirs (1.4.4-4) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.2) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Setting up libctf0:amd64 (2.45-4) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up libgprofng0:amd64 (2.45-4) ... Setting up python3-requests (2.32.4+dfsg-1) ... Setting up binutils-x86-64-linux-gnu (2.45-4) ... Setting up binutils (2.45-4) ... Setting up gcc-14-x86-64-linux-gnu (14.3.0-5) ... Setting up gcc-14 (14.3.0-5) ... Setting up g++-14-x86-64-linux-gnu (14.3.0-5) ... Setting up g++-14 (14.3.0-5) ... Processing triggers for libc-bin (2.41-12) ... 2m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-yf', 'dist-upgrade'] 2m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m6.8s DUMP: 66fe1ff05cc1fa9da98bb4a39f9cdb4b - 2m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'show', '--no-all-versions', 'python3-mdanalysis'] 2m7.0s DUMP: Package: python3-mdanalysis Source: mdanalysis Version: 2.9.0-12 Installed-Size: 24691 Maintainer: Debichem Team Architecture: amd64 Depends: python3-duecredit, python3-biopython (>= 1.80), python3 (<< 3.14), python3 (>= 3.13~), python3-filelock, python3-griddataformats, python3-joblib, python3-matplotlib, python3-mda-xdrlib, python3-mmtf, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-scipy, python3-threadpoolctl, python3-tqdm, python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11) Recommends: python3-sklearn Suggests: python-mdanalysis-doc Description-en: analyse molecular dynamics files and trajectories MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists. . MDAnalysis allows one to read particle-based trajectories (including individual coordinate frames such as biomolecules in the PDB format) and access the atomic coordinates through NumPy arrays. This provides a flexible and relatively fast framework for complex analysis tasks. In addition, powerful atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. . It works with a wide range of popular simulation packages including Gromacs, Amber, NAMD, CHARMM, DL_Poly, HooMD, LAMMPS and many others ?? see the lists of supported trajectory formats and topology formats. MDAnalysis also includes widely used analysis algorithms in the MDAnalysis.analysis module. . The MDAnalysis project uses an open governance model and is fiscally sponsored by NumFOCUS. . This package installs the library for Python 3. Description-md5: 9d4e18df399b20b80dcfdf83cc426a35 Homepage: https://www.mdanalysis.org/ Section: python Priority: optional Filename: pool/main/m/mdanalysis/python3-mdanalysis_2.9.0-12_amd64.deb Size: 4203256 MD5sum: 3680ee0835e0925da5b223599053549c SHA256: 71525c9a3b91dc3fce89b4aff6727875367544710e81882f39ff4adca5e5dde0 2m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'show', '--no-all-versions', 'python3-mdanalysis'] 2m7.0s INFO: apt-cache knows about the following packages: python3-mdanalysis 2m7.0s INFO: Running scripts pre_install 2m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 2m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 2m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 2m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 2m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 2m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 2m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 2m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 2m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 2m7.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 2m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 2m7.0s DUMP: python3-mdanalysis: Installed: 2.9.0-12 Candidate: 2.9.0-12 Version table: *** 2.9.0-12 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 2m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis'] 2m7.3s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-mdanalysis is already the newest version (2.9.0-12). The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsframe1 libtirpc-common libtirpc-dev libtirpc3t64 libxml2 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-autocommand python3-beniget python3-fasteners python3-gast python3-gsd python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-monotonic python3-more-itertools python3-networkx python3-pkg-resources python3-ply python3-pythran python3-pytz python3-setuptools python3-six python3-typeguard python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis'] 2m7.3s INFO: Running scripts post_install 2m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 2m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 2m7.3s INFO: Running scripts post_distupgrade 2m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_exceptions'] 2m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_exceptions'] 2m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_zz_backports'] 2m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_distupgrade_zz_backports'] 2m7.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m9.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m10.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m10.7s INFO: Running scripts pre_install 2m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 2m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_database-server'] 2m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 2m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_exceptions'] 2m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 2m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_extras'] 2m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 2m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture'] 2m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 2m10.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy'] 2m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 2m10.8s DUMP: python3-mdanalysis: Installed: 2.9.0-12 Candidate: 2.9.0-12 Version table: *** 2.9.0-12 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-cache', 'policy', 'python3-mdanalysis'] 2m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis=2.9.0-12'] 2m11.0s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-mdanalysis is already the newest version (2.9.0-12). The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsframe1 libtirpc-common libtirpc-dev libtirpc3t64 libxml2 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-autocommand python3-beniget python3-fasteners python3-gast python3-gsd python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-monotonic python3-more-itertools python3-networkx python3-pkg-resources python3-ply python3-pythran python3-pytz python3-setuptools python3-six python3-typeguard python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', '-y', 'install', 'python3-mdanalysis=2.9.0-12'] 2m11.0s INFO: Running scripts post_install 2m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 2m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_install_exceptions'] 2m11.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m12.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m14.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9drck01o', '-ac', '--ignore-obsolete'] 2m18.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9drck01o', '-ac', '--ignore-obsolete'] 2m18.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m18.3s DUMP: 0.15.9~deb12u1 2m18.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m18.3s INFO: Running adequate version 0.15.9~deb12u1 now. 2m18.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'python3-mdanalysis'] 2m18.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'python3-mdanalysis'] 2m18.3s INFO: Running scripts pre_remove 2m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_exceptions'] 2m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/pre_remove_exceptions'] 2m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m22.0s DUMP: install ok installed adduser adduser 3.152 install ok installed apt apt 3.1.4 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed binutils binutils 2.45-4 install ok installed binutils-common:amd64 binutils-common 2.45-4 install ok installed binutils-gold binutils-gold 2.44-2 install ok installed binutils-gold-x86-64-linux-gnu binutils-gold-x86-64-linux-gnu 2.44-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.45-4 install ok installed blt blt 2.5.3+dfsg-8 install ok installed bsdutils bsdutils 1:2.41.1-1 install ok installed ca-certificates ca-certificates 20250419 install ok installed coreutils coreutils 9.7-3 install ok installed cpp cpp 4:14.2.0-1 install ok installed cpp-12 cpp-12 12.5.0-1 install ok installed cpp-14 cpp-14 14.3.0-5 install ok installed cpp-14-x86-64-linux-gnu cpp-14-x86-64-linux-gnu 14.3.0-5 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:14.2.0-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed e2fsprogs e2fsprogs 1.47.2-3+b3 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.3 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-lyx fonts-lyx 2.4.3-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed g++ g++ 4:14.2.0-1 install ok installed g++-12 g++-12 12.5.0-1 install ok installed g++-14 g++-14 14.3.0-5 install ok installed g++-14-x86-64-linux-gnu g++-14-x86-64-linux-gnu 14.3.0-5 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:14.2.0-1 install ok installed gcc gcc 4:14.2.0-1 install ok installed gcc-12 gcc-12 12.5.0-1 install ok installed gcc-12-base:amd64 gcc-12-base 12.5.0-1 install ok installed gcc-14 gcc-14 14.3.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-5 install ok installed gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu 14.3.0-5 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-1 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:14.2.0-1 install ok installed gpgv gpgv 2.4.8-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.4 install ok installed libasan8:amd64 libasan8 15.2.0-1 install ok installed libatomic1:amd64 libatomic1 15.2.0-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.5-1 install ok installed libbinutils:amd64 libbinutils 2.45-4 install ok installed libblas3:amd64 libblas3 3.12.1-6 install ok installed libblkid1:amd64 libblkid1 2.41.1-1 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4.2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc-dev-bin libc-dev-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libc6-dev:amd64 libc6-dev 2.41-12 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcc1-0:amd64 libcc1-0 15.2.0-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.45-4 install ok installed libctf0:amd64 libctf0 2.45-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdeflate0:amd64 libdeflate0 1.23-2 install ok installed libexpat1:amd64 libexpat1 2.7.1-2 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.7.1-2 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-3+b3 install ok installed libffi8:amd64 libffi8 3.4.8-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.3 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.5.0-1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.3.0-5 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.2-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-1 deinstall ok config-files libglib2.0-0:amd64 libglib2.0-0 2.74.6-2+deb12u6 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.4-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u4 install ok installed libgomp1:amd64 libgomp1 15.2.0-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.55-2 install ok installed libgprofng0:amd64 libgprofng0 2.45-4 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhwasan0:amd64 libhwasan0 15.2.0-1 install ok installed libicu72:amd64 libicu72 72.1-6 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libisl23:amd64 libisl23 0.27-1 install ok installed libitm1:amd64 libitm1 15.2.0-1 install ok installed libjansson4:amd64 libjansson4 2.14-2+b3 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 8.1.3-5 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblapack3:amd64 liblapack3 3.12.1-6 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-1 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b2 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblsan0:amd64 liblsan0 15.2.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-1+b3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-1 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3+b3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.29+ds-3 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.29+ds-3 install ok installed libopenblas0:amd64 libopenblas0 0.3.29+ds-3 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.29+ds-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.3-2.1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u2 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-6 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.50-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.13.5-1 install ok installed libpython3-dev:amd64 libpython3-dev 3.13.5-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.5-1 install ok installed libpython3.11:amd64 libpython3.11 3.11.2-6+deb12u6 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.2-6+deb12u6 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u6 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u6 install ok installed libpython3.13:amd64 libpython3.13 3.13.6-1 install ok installed libpython3.13-dev:amd64 libpython3.13-dev 3.13.6-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.6-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.6-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b2 install ok installed libquadmath0:amd64 libquadmath0 15.2.0-1 install ok installed libraqm0:amd64 libraqm0 0.10.3-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsframe1:amd64 libsframe1 2.44-3 install ok installed libsframe2:amd64 libsframe2 2.45-4 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libss2:amd64 libss2 1.47.2-3+b3 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.5.0-1 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.3.0-5 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 258~rc2-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.17+dfsg-1 install ok installed libtiff6:amd64 libtiff6 4.7.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.6+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.17-1 install ok installed libtsan2:amd64 libtsan2 15.2.0-1 install ok installed libubsan1:amd64 libubsan1 15.2.0-1 install ok installed libudev1:amd64 libudev1 258~rc2-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41.1-1 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxft2:amd64 libxft2 2.3.6-1+b4 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-2.2 install ok installed libxml2-16:amd64 libxml2-16 2.14.5+dfsg-0.1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxsimd-dev:amd64 libxsimd-dev 13.2.0-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.43-0.2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzopfli1 libzopfli1 1.0.3-3 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.12.38-1 install ok installed login login 1:4.16.0-2+really2.41.1-1 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed logsave logsave 1.47.2-3+b3 install ok installed mailcap mailcap 3.74 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.41.1-1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl openssl 3.5.2-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl perl 5.40.1-6 install ok installed perl-base perl-base 5.40.1-6 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u2 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-6 install ok installed procps procps 2:4.0.4-9 install ok installed python-matplotlib-data python-matplotlib-data 3.10.1+dfsg1-4 install ok installed python3 python3 3.13.5-1 install ok installed python3-all python3-all 3.13.5-1 install ok installed python3-all-dev python3-all-dev 3.13.5-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-attr python3-attr 25.3.0-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-biopython python3-biopython 1.85+dfsg-4 install ok installed python3-brotli python3-brotli 1.1.0-2+b7 install ok installed python3-cairo python3-cairo 1.27.0-2 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.2-1 install ok installed python3-citeproc python3-citeproc 0.8.2-1 install ok installed python3-contourpy python3-contourpy 1.3.1-2 install ok installed python3-cycler python3-cycler 0.12.1-2 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-decorator python3-decorator 5.2.1-2 install ok installed python3-dev python3-dev 3.13.5-1 install ok installed python3-duecredit python3-duecredit 0.10.2-2 install ok installed python3-fasteners python3-fasteners 0.18-2 install ok installed python3-filelock python3-filelock 3.18.0-1 install ok installed python3-fonttools python3-fonttools 4.57.0-1 install ok installed python3-freetype python3-freetype 2.5.1-2 install ok installed python3-fs python3-fs 2.4.16-7 install ok installed python3-gast python3-gast 0.6.0-1 install ok installed python3-griddataformats python3-griddataformats 1.0.2-2 install ok installed python3-gsd python3-gsd 4.0.0-1 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jaraco.text python3-jaraco.text 4.0.0-1 install ok installed python3-joblib python3-joblib 1.4.2-4 install ok installed python3-kiwisolver python3-kiwisolver 1.4.7-3+b1 install ok installed python3-looseversion python3-looseversion 1.3.0-3 install ok installed python3-lxml:amd64 python3-lxml 5.4.0-1+b1 install ok installed python3-lz4 python3-lz4 4.4.0+dfsg-2 install ok installed python3-matplotlib python3-matplotlib 3.10.1+dfsg1-4 install ok installed python3-mda-xdrlib python3-mda-xdrlib 0.2.0-3 install ok installed python3-mdanalysis python3-mdanalysis 2.9.0-12 install ok installed python3-minimal python3-minimal 3.13.5-1 install ok installed python3-mmtf python3-mmtf 1.1.3-1 install ok installed python3-monotonic python3-monotonic 1.6-3 install ok installed python3-more-itertools python3-more-itertools 10.7.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-mrcfile python3-mrcfile 1.5.4-2 install ok installed python3-msgpack python3-msgpack 1.0.3-3+b4 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numpy python3-numpy 1:2.2.4+ds-1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.4+ds-1 install ok installed python3-packaging python3-packaging 25.0-1 install ok installed python3-pil:amd64 python3-pil 11.1.0-5+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 11.1.0-5+b1 install ok installed python3-pkg-resources python3-pkg-resources 78.1.1-0.1 install ok installed python3-platformdirs python3-platformdirs 4.3.7-1 install ok installed python3-ply python3-ply 3.11-9 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pythran python3-pythran 0.17.0+ds-2 install ok installed python3-pytz python3-pytz 2025.2-3 install ok installed python3-reportlab python3-reportlab 4.4.3-1 install ok installed python3-requests python3-requests 2.32.4+dfsg-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-scipy python3-scipy 1.15.3-1 install ok installed python3-setuptools python3-setuptools 78.1.1-0.1 install ok installed python3-six python3-six 1.17.0-1 install ok installed python3-sympy python3-sympy 1.14.0-2 install ok installed python3-threadpoolctl python3-threadpoolctl 3.1.0-1 install ok installed python3-tk:amd64 python3-tk 3.13.5-1 install ok installed python3-tqdm python3-tqdm 4.67.1-5 install ok installed python3-typeguard python3-typeguard 4.4.4-1 install ok installed python3-typing-extensions python3-typing-extensions 4.14.1-1 install ok installed python3-tz python3-tz 2025.2-3 install ok installed python3-ufolib2 python3-ufolib2 0.17.1+dfsg1-1 install ok installed python3-urllib3 python3-urllib3 2.5.0-1 install ok installed python3-zipp python3-zipp 3.21.0-1 install ok installed python3-zopfli python3-zopfli 0.2.3.post1-1+b1 install ok installed python3.11 python3.11 3.11.2-6+deb12u6 install ok installed python3.11-dev python3.11-dev 3.11.2-6+deb12u6 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u6 install ok installed python3.13 python3.13 3.13.6-1 install ok installed python3.13-dev python3.13-dev 3.13.6-1 install ok installed python3.13-minimal python3.13-minimal 3.13.6-1 install ok installed python3.13-tk python3.13-tk 3.13.6-1 install ok installed readline-common readline-common 8.2-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 3.0.2+dfsg-3 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-8 install ok installed tzdata tzdata 2025b-5 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41.1-1 install ok installed util-linux-extra util-linux-extra 2.41.1-1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+24 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed xtl-dev xtl-dev 0.7.7-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 2m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'libsframe1:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libzopfli1', 'linux-libc-dev', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'procps', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-autocommand', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-citeproc', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-duecredit', 'python3-fasteners', 'python3-filelock', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-griddataformats', 'python3-gsd', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-joblib', 'python3-kiwisolver', 'python3-looseversion', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-mda-xdrlib', 'python3-minimal', 'python3-mmtf', 'python3-monotonic', 'python3-more-itertools', 'python3-mpmath', 'python3-mrcfile', 'python3-msgpack', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pyparsing', 'python3-pythran', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-sympy', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-zipp', 'python3-zopfli', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64', 'python3-mdanalysis'] 2m45.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libglib2.0-0' is not installed, so not removed The following package was automatically installed and is no longer required: gcc-14-base Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: binutils binutils-common binutils-gold binutils-gold-x86-64-linux-gnu binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-12 g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-12 gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libperl5.36 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 libsframe1 libsframe2 libsharpyuv0 libstdc++-12-dev libstdc++-14-dev libtcl8.6 libtiff6 libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-16 libxrender1 libxsimd-dev libxslt1.1 libxss1 libzopfli1 linux-libc-dev mailcap media-types mime-support netbase openssl perl perl-modules-5.36 perl-modules-5.40 procps python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-autocommand python3-beniget python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-citeproc python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-duecredit python3-fasteners python3-filelock python3-fonttools python3-freetype python3-fs python3-gast python3-griddataformats python3-gsd python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-joblib python3-kiwisolver python3-looseversion python3-lxml python3-lz4 python3-matplotlib python3-mda-xdrlib python3-mdanalysis python3-minimal python3-mmtf python3-monotonic python3-more-itertools python3-mpmath python3-mrcfile python3-msgpack python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-platformdirs python3-ply python3-pyparsing python3-pythran python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-setuptools python3-six python3-sympy python3-threadpoolctl python3-tk python3-tqdm python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-urllib3 python3-zipp python3-zopfli python3.11 python3.11-dev python3.11-minimal python3.13 python3.13-dev python3.13-minimal python3.13-tk readline-common rpcsvc-proto sgml-base sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core xtl-dev zlib1g-dev 0 upgraded, 0 newly installed, 252 to remove and 0 not upgraded. After this operation, 1502 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55931 files and directories currently installed.) Removing python3-pythran (0.17.0+ds-2) ... Removing g++ (4:14.2.0-1) ... Removing gcc (4:14.2.0-1) ... Removing g++-12 (12.5.0-1) ... Removing gcc-12 (12.5.0-1) ... Removing g++-x86-64-linux-gnu (4:14.2.0-1) ... Removing gcc-x86-64-linux-gnu (4:14.2.0-1) ... Removing binutils-gold (2.44-2) ... Removing binutils-gold-x86-64-linux-gnu (2.44-2) ... Removing python3-mdanalysis (2.9.0-12) ... Removing python3-biopython (1.85+dfsg-4) ... Removing python3-reportlab (4.4.3-1) ... Removing python3-matplotlib (3.10.1+dfsg1-4) ... Removing python3-pil.imagetk:amd64 (11.1.0-5+b1) ... Removing python3-pil:amd64 (11.1.0-5+b1) ... Removing python3-tk:amd64 (3.13.5-1) ... Removing blt (2.5.3+dfsg-8) ... Removing python3-duecredit (0.10.2-2) ... Removing python3-requests (2.32.4+dfsg-1) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:14.2.0-1) ... Removing cpp-12 (12.5.0-1) ... Removing cpp-x86-64-linux-gnu (4:14.2.0-1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-8) ... Removing python3.13-tk (3.13.6-1) ... Removing libtk8.6:amd64 (8.6.17-1) ... Removing libxft2:amd64 (2.3.6-1+b4) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.27.0-2) ... Removing libcairo2:amd64 (1.18.4-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-2.3) ... Removing fontconfig-config (2.15.0-2.3) ... Removing python-matplotlib-data (3.10.1+dfsg1-4) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing python3-griddataformats (1.0.2-2) ... Removing python3-mrcfile (1.5.4-2) ... Removing sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing fonts-lyx (2.4.3-1) ... Removing fonts-urw-base35 (20200910-8) ... Removing g++-14 (14.3.0-5) ... Removing g++-14-x86-64-linux-gnu (14.3.0-5) ... Removing libboost-dev:amd64 (1.83.0.2+b2) ... Removing libboost1.83-dev:amd64 (1.83.0-4.2) ... Removing libstdc++-14-dev:amd64 (14.3.0-5) ... Removing libstdc++-12-dev:amd64 (12.5.0-1) ... Removing libgcc-12-dev:amd64 (12.5.0-1) ... Removing libraqm0:amd64 (0.10.3-1) ... Removing libharfbuzz0b:amd64 (10.2.0-1+b1) ... Removing libglib2.0-0t64:amd64 (2.84.4-3) ... Removing python3-gsd (4.0.0-1) ... Removing python3-mmtf (1.1.3-1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Removing liblapack3:amd64 (3.12.1-6) ... Removing libblas3:amd64 (3.12.1-6) ... Removing xfonts-utils (1:7.7+7) ... Removing python3-freetype (2.5.1-2) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing python3.11-dev (3.11.2-6+deb12u6) ... Removing libpython3.11-dev:amd64 (3.11.2-6+deb12u6) ... Removing python3-all-dev (3.13.5-1) ... Removing python3-dev (3.13.5-1) ... Removing python3.13-dev (3.13.6-1) ... Removing libtiff6:amd64 (4.7.0-3) ... Removing libdeflate0:amd64 (1.23-2) ... Removing libpython3.11:amd64 (3.11.2-6+deb12u6) ... Removing python3.11 (3.11.2-6+deb12u6) ... Removing python3.11-minimal (3.11.2-6+deb12u6) ... Removing libfontenc1:amd64 (1:1.1.8-1+b2) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ... Removing mime-support (3.66) ... Removing mailcap (3.74) ... Removing perl (5.40.1-6) ... Removing libperl5.40:amd64 (5.40.1-6) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u2) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libopenblas-dev:amd64 (0.3.29+ds-3) ... Removing libopenblas-pthread-dev:amd64 (0.3.29+ds-3) ... Removing libopenblas0:amd64 (0.3.29+ds-3) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libgraphite2-3:amd64 (1.3.14-3) ... Removing libnsl-dev:amd64 (1.3.0-3+b3) ... Removing libtirpc-dev:amd64 (1.3.6+ds-1) ... Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libtirpc3t64:amd64 (1.3.6+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libicu72:amd64 (72.1-6) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing libjs-sphinxdoc (8.1.3-5) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-6) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing python3-tqdm (4.67.1-5) ... Removing python3-networkx (3.2.1-5) ... Removing python3-setuptools (78.1.1-0.1) ... Removing python3-jaraco.text (4.0.0-1) ... Removing python3-joblib (1.4.2-4) ... Removing procps (2:4.0.4-9) ... Removing libopenjp2-7:amd64 (2.5.3-2.1) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libpng16-16t64:amd64 (1.6.50-1) ... Removing libproc2-0:amd64 (2:4.0.4-9) ... Removing libpython3-all-dev:amd64 (3.13.5-1) ... Removing libpython3-dev:amd64 (3.13.5-1) ... Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ... Removing libqhull-r8.0:amd64 (2020.2-6+b2) ... Removing libsframe1:amd64 (2.44-3) ... Removing libwebpmux3:amd64 (1.5.0-0.1) ... Removing libwebpdemux2:amd64 (1.5.0-0.1) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libtcl8.6:amd64 (8.6.17+dfsg-1) ... Removing libtirpc-common (1.3.6+ds-1) ... Removing libxss1:amd64 (1:1.2.3-1+b3) ... Removing libxrender1:amd64 (1:0.9.12-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.2) ... Removing python3-citeproc (0.8.2-1) ... Removing libxsimd-dev:amd64 (13.2.0-1) ... Removing openssl (3.5.2-1) ... Removing perl-modules-5.36 (5.36.0-7+deb12u2) ... Removing perl-modules-5.40 (5.40.1-6) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-beniget (0.4.1-3) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.2-1) ... Removing python3-contourpy (1.3.1-2) ... Removing python3-cycler (0.12.1-2) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-fasteners (0.18-2) ... Removing python3-filelock (3.18.0-1) ... Removing python3-gast (0.6.0-1) ... Removing python3-idna (3.10-1) ... Removing python3-kiwisolver (1.4.7-3+b1) ... Removing python3-looseversion (1.3.0-3) ... Removing python3-mda-xdrlib (0.2.0-3) ... Removing python3-monotonic (1.6-3) ... Removing python3-msgpack (1.0.3-3+b4) ... Removing python3-packaging (25.0-1) ... Removing python3-ply (3.11-9) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-tz (2025.2-3) ... Removing python3-pytz (2025.2-3) ... Removing python3-six (1.17.0-1) ... Removing python3-threadpoolctl (3.1.0-1) ... Removing python3-urllib3 (2.5.0-1) ... Removing python3-zipp (3.21.0-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31+nmu1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xtl-dev (0.7.7-1) ... Removing gcc-14 (14.3.0-5) ... Removing binutils (2.45-4) ... Removing libgprofng0:amd64 (2.45-4) ... Removing gcc-14-x86-64-linux-gnu (14.3.0-5) ... Removing binutils-x86-64-linux-gnu (2.45-4) ... Removing libctf0:amd64 (2.45-4) ... Removing libbinutils:amd64 (2.45-4) ... Removing binutils-common:amd64 (2.45-4) ... Removing cpp-14 (14.3.0-5) ... Removing cpp-14-x86-64-linux-gnu (14.3.0-5) ... Removing libgcc-14-dev:amd64 (14.3.0-5) ... Removing libasan8:amd64 (15.2.0-1) ... Removing libatomic1:amd64 (15.2.0-1) ... Removing libpython3.13-dev:amd64 (3.13.6-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libexpat1-dev:amd64 (2.7.1-2) ... Removing libc6-dev:amd64 (2.41-12) ... Removing libc-dev-bin (2.41-12) ... Removing libcc1-0:amd64 (15.2.0-1) ... Removing libcrypt-dev:amd64 (1:4.4.38-1) ... Removing libctf-nobfd0:amd64 (2.45-4) ... Removing libgomp1:amd64 (15.2.0-1) ... Removing libhwasan0:amd64 (15.2.0-1) ... Removing libisl23:amd64 (0.27-1) ... Removing libitm1:amd64 (15.2.0-1) ... Removing libjansson4:amd64 (2.14-2+b3) ... Removing liblsan0:amd64 (15.2.0-1) ... Removing libmpc3:amd64 (1.3.1-1+b3) ... Removing libmpfr6:amd64 (4.2.2-1) ... Removing python3-pkg-resources (78.1.1-0.1) ... Removing python3-jaraco.context (6.0.1-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.4-1) ... Removing libpython3.13:amd64 (3.13.6-1) ... Removing libquadmath0:amd64 (15.2.0-1) ... Removing libsframe2:amd64 (2.45-4) ... Removing libtsan2:amd64 (15.2.0-1) ... Removing libubsan1:amd64 (15.2.0-1) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing linux-libc-dev (6.12.38-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.7.0-1) ... Removing python3-typing-extensions (4.14.1-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing python3-ufolib2 (0.17.1+dfsg1-1) ... Removing python3-attr (25.3.0-1) ... Removing python3-fonttools (4.57.0-1) ... Removing python3-scipy (1.15.3-1) ... Removing python3-numpy (1:2.2.4+ds-1) ... Removing libopenblas0-pthread:amd64 (0.3.29+ds-3) ... Removing libgfortran5:amd64 (15.2.0-1) ... Removing python3-all (3.13.5-1) ... Removing python3-zopfli (0.2.3.post1-1+b1) ... Removing python3-sympy (1.14.0-2) ... Removing python3-lxml:amd64 (5.4.0-1+b1) ... Removing libxslt1.1:amd64 (1.1.43-0.2) ... Removing libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Removing libzopfli1 (1.0.3-3) ... Removing python3-brotli (1.1.0-2+b7) ... Removing python3-decorator (5.2.1-2) ... Removing python3-fs (2.4.16-7) ... Removing python3-lz4 (4.4.0+dfsg-2) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Removing python3-platformdirs (4.3.7-1) ... Removing unicode-data (15.1.0-1) ... Removing python3 (3.13.5-1) ... Removing python3.13 (3.13.6-1) ... Removing libpython3-stdlib:amd64 (3.13.5-1) ... Removing python3-minimal (3.13.5-1) ... Removing python3.13-minimal (3.13.6-1) ... Removing libexpat1:amd64 (2.7.1-2) ... Removing libpython3.13-stdlib:amd64 (3.13.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing libpython3.13-minimal:amd64 (3.13.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.2-6) ... Processing triggers for libc-bin (2.41-12) ... 2m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'libsframe1:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libzopfli1', 'linux-libc-dev', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'procps', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-autocommand', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-citeproc', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-duecredit', 'python3-fasteners', 'python3-filelock', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-griddataformats', 'python3-gsd', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-joblib', 'python3-kiwisolver', 'python3-looseversion', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-mda-xdrlib', 'python3-minimal', 'python3-mmtf', 'python3-monotonic', 'python3-more-itertools', 'python3-mpmath', 'python3-mrcfile', 'python3-msgpack', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pyparsing', 'python3-pythran', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-sympy', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-zipp', 'python3-zopfli', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64', 'python3-mdanalysis'] 2m45.9s INFO: Running scripts post_remove 2m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_remove_exceptions'] 2m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_remove_exceptions'] 2m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'libsframe1:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libzopfli1', 'linux-libc-dev', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'procps', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-autocommand', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-citeproc', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-duecredit', 'python3-fasteners', 'python3-filelock', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-griddataformats', 'python3-gsd', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-joblib', 'python3-kiwisolver', 'python3-looseversion', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-mda-xdrlib', 'python3-minimal', 'python3-mmtf', 'python3-monotonic', 'python3-more-itertools', 'python3-mpmath', 'python3-mrcfile', 'python3-msgpack', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pyparsing', 'python3-pythran', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-sympy', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-zipp', 'python3-zopfli', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64'] 2m46.3s DUMP: (Reading database ... 5470 files and directories currently installed.) Purging configuration files for binutils (2.45-4) ... Purging configuration files for binutils-common:amd64 (2.45-4) ... dpkg: warning: ignoring request to remove binutils-gold which isn't installed dpkg: warning: ignoring request to remove binutils-gold-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:14.2.0-1) ... dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove cpp-14 which isn't installed dpkg: warning: ignoring request to remove cpp-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which isn't installed Purging configuration files for fontconfig-config (2.15.0-2.3) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove g++-14 which isn't installed dpkg: warning: ignoring request to remove g++-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove gcc-14 which isn't installed dpkg: warning: ignoring request to remove gcc-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.84.4-3) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.13 which isn't installed dpkg: warning: ignoring request to remove libpython3.13-dev which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.6-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsframe2 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxml2-16 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libzopfli1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for mailcap (3.74) ... Purging configuration files for media-types (13.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for netbase (6.5) ... Purging configuration files for openssl (3.5.2-1) ... Purging configuration files for perl (5.40.1-6) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed Purging configuration files for procps (2:4.0.4-9) ... Purging configuration files for python-matplotlib-data (3.10.1+dfsg1-4) ... Purging configuration files for python3 (3.13.5-1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-citeproc which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-duecredit which isn't installed dpkg: warning: ignoring request to remove python3-fasteners which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-griddataformats which isn't installed dpkg: warning: ignoring request to remove python3-gsd which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.text which isn't installed dpkg: warning: ignoring request to remove python3-joblib which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-looseversion which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-mda-xdrlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mmtf which isn't installed dpkg: warning: ignoring request to remove python3-monotonic which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-mrcfile which isn't installed dpkg: warning: ignoring request to remove python3-msgpack which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed Purging configuration files for python3-numpy (1:2.2.4+ds-1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed Purging configuration files for python3-sympy (1.14.0-2) ... dpkg: warning: ignoring request to remove python3-threadpoolctl which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3-zopfli which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u6) ... dpkg: warning: ignoring request to remove python3.13 which isn't installed dpkg: warning: ignoring request to remove python3.13-dev which isn't installed Purging configuration files for python3.13-minimal (3.13.6-1) ... dpkg: warning: ignoring request to remove python3.13-tk which isn't installed Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for sgml-base (1.31+nmu1) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+24) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove xtl-dev which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 2m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-gold', 'binutils-gold-x86-64-linux-gnu', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'libsframe1:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libzopfli1', 'linux-libc-dev', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'procps', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-autocommand', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-citeproc', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-duecredit', 'python3-fasteners', 'python3-filelock', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-griddataformats', 'python3-gsd', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-joblib', 'python3-kiwisolver', 'python3-looseversion', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-mda-xdrlib', 'python3-minimal', 'python3-mmtf', 'python3-monotonic', 'python3-more-itertools', 'python3-mpmath', 'python3-mrcfile', 'python3-msgpack', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pyparsing', 'python3-pythran', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-sympy', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-zipp', 'python3-zopfli', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64'] 2m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg', '--purge', 'python3-mdanalysis'] 2m46.3s DUMP: dpkg: warning: ignoring request to remove python3-mdanalysis which isn't installed 2m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg', '--purge', 'python3-mdanalysis'] 2m46.3s INFO: Running scripts post_purge 2m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_purge_exceptions'] 2m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_purge_exceptions'] 2m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg', '--purge', '--pending'] 2m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg', '--purge', '--pending'] 2m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg', '--remove', '--pending'] 2m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg', '--remove', '--pending'] 2m46.3s INFO: Running scripts post_test 2m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_test_exceptions'] 2m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'tmp/scripts/post_test_exceptions'] 2m46.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m46.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg-divert', '--list'] 2m46.5s DUMP: diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra 2m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'dpkg-divert', '--list'] 2m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'clean'] 2m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9drck01o', 'apt-get', 'clean'] 2m46.6s DEBUG: Recording chroot state 2m47.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/shm'] 2m47.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/shm'] 2m47.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/console'] 2m47.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/console'] 2m47.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/ptmx'] 2m47.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/ptmx'] 2m47.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/pts'] 2m47.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/dev/pts'] 2m47.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/proc'] 2m47.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9drck01o/proc'] 2m47.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m47.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9drck01o'] 2m47.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9drck01o 2m47.4s INFO: PASS: Upgrading between Debian distributions. 2m47.4s INFO: PASS: All tests. 2m47.4s INFO: piuparts run ends. ret=0 End: 2025-08-19 10:56:49 GMT