Start: 2025-09-24 23:41:32 GMT [oldstable] Package: apbs Version: 3.4.1-5 Installed-Size: 364 Maintainer: Debichem Team Architecture: amd64 Depends: apbs-data (= 3.4.1-5), libapbs3 (= 3.4.1-5), libjs-mathjax, libamd2 (>= 1:4.5.2), libarpack2 (>= 2.1), libblas3 | libblas.so.3, libc6 (>= 2.34), libcamd2 (>= 1:4.5.2), libccolamd2 (>= 1:4.5.2), libcholmod3 (>= 1:4.5.2), libcolamd2 (>= 1:4.5.2), libfetk1.9 (>= 3.4.1), libgomp1 (>= 4.2.1), libmaloc1 (>= 0.2-1), libopenmpi3 (>= 4.1.4), libspqr2 (>= 1:5.12.0+dfsg), libstdc++6 (>= 4.1.1), libsuitesparseconfig5 (>= 1:5.0.0), libsuperlu5 (>= 5.3.0+dfsg1), libumfpack5 (>= 1:4.5.2) Description: Adaptive Poisson Boltzmann Solver Homepage: http://www.poissonboltzmann.org/ Description-md5: 2babbf799be2526f2121cce538f5aa47 Tag: field::chemistry, implemented-in::c, interface::commandline, role::program, scope::utility Section: science Priority: optional Filename: pool/main/a/apbs/apbs_3.4.1-5_amd64.deb Size: 77756 MD5sum: 4797f404984f05b71a536f7f8e05446e SHA256: 2853ac3dfe0a1b540b5b28d9c5546bc0344380812acd1bad0c5c1fe276c93d47 [stable] Package: apbs Source: apbs (3.4.1-6) Version: 3.4.1-6+b3 Installed-Size: 373 Maintainer: Debichem Team Architecture: amd64 Depends: apbs-data (= 3.4.1-6), libapbs3t64 (= 3.4.1-6+b3), libjs-mathjax, libamd3 (>= 1:7.0.1), libarpack2t64 (>= 2.1), libblas3 | libblas.so.3, libc6 (>= 2.34), libcamd3 (>= 1:7.0.1), libccolamd3 (>= 1:7.0.1), libcholmod5 (>= 1:7.3.1), libcolamd3 (>= 1:7.0.1), libfetk1.9t64 (>= 3.4.1), libgomp1 (>= 4.2.1), libmaloc1 (>= 0.2-1), libopenmpi40 (>= 5.0.6), libspqr4 (>= 1:7.8.3+dfsg), libstdc++6 (>= 4.1.1), libsuitesparseconfig7 (>= 1:7.0.1), libsuperlu7 (>= 7.0.0+dfsg1), libumfpack6 (>= 1:7.0.1) Description: Adaptive Poisson Boltzmann Solver Homepage: http://www.poissonboltzmann.org/ Description-md5: 2babbf799be2526f2121cce538f5aa47 Tag: field::chemistry, implemented-in::c, interface::commandline, role::program, scope::utility Section: science Priority: optional Filename: pool/main/a/apbs/apbs_3.4.1-6+b3_amd64.deb Size: 79268 MD5sum: df383be0308a158af795c694c8b66d77 SHA256: fb3ee9032823b1454fb29b583a4f2d62d307319a67d735da895ceaa8963e3bcf [testing] Package: apbs Version: 3.4.1-7 Installed-Size: 376 Maintainer: Debichem Team Architecture: amd64 Depends: apbs-data (= 3.4.1-7), libapbs3t64 (= 3.4.1-7), libjs-mathjax, libamd3 (>= 1:7.0.1), libarpack2t64 (>= 2.1), libblas3 | libblas.so.3, libc6 (>= 2.34), libcamd3 (>= 1:7.0.1), libccolamd3 (>= 1:7.0.1), libcholmod5 (>= 1:7.3.1), libcolamd3 (>= 1:7.0.1), libfetk1.9t64 (>= 3.4.1), libgomp1 (>= 4.2.1), libmaloc1 (>= 0.2-1), libopenmpi40 (>= 5.0.8), libspqr4 (>= 1:7.11.0+dfsg), libstdc++6 (>= 4.1.1), libsuitesparseconfig7 (>= 1:7.0.1), libsuperlu7 (>= 7.0.1+dfsg1), libumfpack6 (>= 1:7.0.1) Description: Adaptive Poisson Boltzmann Solver Homepage: http://www.poissonboltzmann.org/ Description-md5: 2babbf799be2526f2121cce538f5aa47 Tag: field::chemistry, implemented-in::c, interface::commandline, role::program, scope::utility Section: science Priority: optional Filename: pool/main/a/apbs/apbs_3.4.1-7_amd64.deb Size: 79136 MD5sum: 4941bd51ef227b5360828aecd0c10e35 SHA256: 109578ea5c470901682220b8e6044cb7c02a4d8a12209c1da4adc1ee6bdaa57f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -B /srv/piuparts.debian.org/slave/refchroot/oldstable22testing/reference-chroot-metadata.dat --apt apbs=3.4.1-7 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -B /srv/piuparts.debian.org/slave/refchroot/oldstable22testing/reference-chroot-metadata.dat --apt apbs=3.4.1-7 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-40-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.153-1 (2025-09-20) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmprn5daac2 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmprn5daac2 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmprn5daac2', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmprn5daac2', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmprn5daac2/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmprn5daac2/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmprn5daac2/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'update'] 0m1.1s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'update'] 0m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-yf', 'dist-upgrade'] 0m1.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-yf', 'dist-upgrade'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.7s DUMP: 7ec3a68e34ef928e31b3b606406d4b66 - 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.7s INFO: Running scripts post_setup 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_dummy_users'] 0m2.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_dummy_users'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_forbid_home'] 0m2.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_forbid_home'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_minimize'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_minimize'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_zz_backports'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_setup_zz_backports'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.5s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u12 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b9 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u2 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14+deb12u1 install ok installed gpgv gpgv 2.2.40-1.1+deb12u1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2+deb12u1 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u13 install ok installed libc6:amd64 libc6 2.36-9+deb12u13 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4+deb12u2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14+deb12u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u3 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u3 install ok installed libss2:amd64 libss2 1.47.0-2+b2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14+deb12u1 install ok installed libsystemd0:amd64 libsystemd0 252.39-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.39-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+deb12u1 install ok installed logsave logsave 1.47.0-2+b2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u3 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u3 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2025b-0+deb12u2 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u3 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u3 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/oldstable22testing/reference-chroot-metadata.dat 0m2.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m2.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m2.9s INFO: Running scripts is_testable 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/is_testable_uninstallable'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/is_testable_uninstallable'] 0m2.9s INFO: Running scripts pre_test 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_test_exceptions'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_test_exceptions'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_test_root_password'] 0m2.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_test_root_password'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'show', '--no-all-versions', 'apbs'] 0m3.1s DUMP: Package: apbs Version: 3.4.1-5 Installed-Size: 364 Maintainer: Debichem Team Architecture: amd64 Depends: apbs-data (= 3.4.1-5), libapbs3 (= 3.4.1-5), libjs-mathjax, libamd2 (>= 1:4.5.2), libarpack2 (>= 2.1), libblas3 | libblas.so.3, libc6 (>= 2.34), libcamd2 (>= 1:4.5.2), libccolamd2 (>= 1:4.5.2), libcholmod3 (>= 1:4.5.2), libcolamd2 (>= 1:4.5.2), libfetk1.9 (>= 3.4.1), libgomp1 (>= 4.2.1), libmaloc1 (>= 0.2-1), libopenmpi3 (>= 4.1.4), libspqr2 (>= 1:5.12.0+dfsg), libstdc++6 (>= 4.1.1), libsuitesparseconfig5 (>= 1:5.0.0), libsuperlu5 (>= 5.3.0+dfsg1), libumfpack5 (>= 1:4.5.2) Description-en: Adaptive Poisson Boltzmann Solver APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including: . * simulation of diffusional processes to determine ligand-protein and protein-protein binding kinetics, * implicit solvent molecular dynamics of biomolecules , * solvation and binding energy calculations to determine ligand-protein and protein-protein equilibrium binding constants and aid in rational drug design, * and biomolecular titration studies. . APBS was designed to efficiently evaluate electrostatic properties for such simulations for a wide range of length scales to enable the investigation of molecules with tens to millions of atoms. . This package contains the apbs program and utilities. Description-md5: 2babbf799be2526f2121cce538f5aa47 Homepage: http://www.poissonboltzmann.org/ Tag: field::chemistry, implemented-in::c, interface::commandline, role::program, scope::utility Section: science Priority: optional Filename: pool/main/a/apbs/apbs_3.4.1-5_amd64.deb Size: 77756 MD5sum: 4797f404984f05b71a536f7f8e05446e SHA256: 2853ac3dfe0a1b540b5b28d9c5546bc0344380812acd1bad0c5c1fe276c93d47 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'show', '--no-all-versions', 'apbs'] 0m3.1s INFO: apt-cache knows about the following packages: apbs 0m3.1s INFO: Running scripts pre_install 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_database-server'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_database-server'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_exceptions'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_exceptions'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_extras'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_extras'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy'] 0m3.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.12,o=Debian,a=oldstable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy', 'apbs'] 0m3.2s DUMP: apbs: Installed: (none) Candidate: 3.4.1-5 Version table: 3.4.1-5 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy', 'apbs'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-y', 'install', 'apbs'] 0m8.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: apbs-data fonts-mathjax ibverbs-providers libamd2 libapbs3 libarpack2 libatomic1 libblas3 libbsd0 libcamd2 libccolamd2 libcholmod3 libcolamd2 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfetk1.9 libgfortran5 libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjs-mathjax liblapack3 libmaloc1 libmetis5 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libreadline8 libspqr2 libsuitesparseconfig5 libsuperlu5 libucx0 libumfpack5 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 readline-common Suggested packages: libhwloc-contrib-plugins fonts-mathjax-extras fonts-stix libjs-mathjax-doc pciutils opencl-icd readline-doc The following NEW packages will be installed: apbs apbs-data fonts-mathjax ibverbs-providers libamd2 libapbs3 libarpack2 libatomic1 libblas3 libbsd0 libcamd2 libccolamd2 libcholmod3 libcolamd2 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfetk1.9 libgfortran5 libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjs-mathjax liblapack3 libmaloc1 libmetis5 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libreadline8 libspqr2 libsuitesparseconfig5 libsuperlu5 libucx0 libumfpack5 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 readline-common 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 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http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libspqr2 amd64 1:5.12.0+dfsg-2 [82.2 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 apbs amd64 3.4.1-5 [77.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.0 MB in 1s (63.2 MB/s) Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6099 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package apbs-data. Preparing to unpack .../01-apbs-data_3.4.1-5_all.deb ... Unpacking apbs-data (3.4.1-5) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../02-libreadline8_8.2-1.3_amd64.deb ... 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Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../48-ocl-icd-libopencl1_2.3.1-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.1-1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../49-libhwloc-plugins_2.9.0-1_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.9.0-1) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../50-libpmix2_4.2.2-1+deb12u1_amd64.deb ... Unpacking libpmix2:amd64 (4.2.2-1+deb12u1) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../51-libucx0_1.13.1-1_amd64.deb ... Unpacking libucx0:amd64 (1.13.1-1) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../52-libopenmpi3_4.1.4-3+b1_amd64.deb ... Unpacking libopenmpi3:amd64 (4.1.4-3+b1) ... Selecting previously unselected package libspqr2:amd64. Preparing to unpack .../53-libspqr2_1%3a5.12.0+dfsg-2_amd64.deb ... Unpacking libspqr2:amd64 (1:5.12.0+dfsg-2) ... Selecting previously unselected package apbs. Preparing to unpack .../54-apbs_3.4.1-5_amd64.deb ... Unpacking apbs (3.4.1-5) ... Setting up libpciaccess0:amd64 (0.17-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libicu72:amd64 (72.1-3+deb12u1) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libmetis5:amd64 (5.1.0.dfsg-7) ... Setting up apbs-data (3.4.1-5) ... Setting up libgomp1:amd64 (12.2.0-14+deb12u1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libmunge2 (0.5.15-2) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libquadmath0:amd64 (12.2.0-14+deb12u1) ... Setting up libhwloc15:amd64 (2.9.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libatomic1:amd64 (12.2.0-14+deb12u1) ... Setting up libgfortran5:amd64 (12.2.0-14+deb12u1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.1-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libbsd0:amd64 (0.11.7-2) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u4) ... Setting up libsuitesparseconfig5:amd64 (1:5.12.0+dfsg-2) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libcolamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libarpack2:amd64 (3.8.0-3) ... Setting up libsuperlu5:amd64 (5.3.0+dfsg1-2+b1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libcamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libccolamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libcholmod3:amd64 (1:5.12.0+dfsg-2) ... Setting up libmaloc1 (1.5-1) ... Setting up libspqr2:amd64 (1:5.12.0+dfsg-2) ... Setting up libibverbs1:amd64 (44.0-2) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libxnvctrl0:amd64 (525.85.05-3~deb12u1) ... Setting up libumfpack5:amd64 (1:5.12.0+dfsg-2) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up libfetk1.9:amd64 (3.4.1-5) ... Setting up libapbs3:amd64 (3.4.1-5) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libpmix2:amd64 (4.2.2-1+deb12u1) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up apbs (3.4.1-5) ... Processing triggers for libc-bin (2.36-9+deb12u13) ... 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-y', 'install', 'apbs'] 0m8.3s INFO: Running scripts post_install 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_install_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_install_exceptions'] 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m8.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m8.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmprn5daac2 to stable 0m8.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m8.9s INFO: Running scripts pre_distupgrade 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'update'] 0m11.9s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [140 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9669 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6484 kB] Fetched 16.3 MB in 2s (7049 kB/s) Reading package lists... 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'update'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-yf', 'dist-upgrade'] 0m29.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libamd2 libatomic1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libicu72 libmetis5 libpsm-infinipath1 libquadmath0 libspqr2 libsuitesparseconfig5 libsuperlu5 libumfpack5 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapbs3 libarpack2 libdb5.3 libevent-core-2.1-7 libevent-pthreads-2.1-7 libext2fs2 libfetk1.9 libhogweed6 libnettle8 libopenmpi3 libpmix2 librdmacm1 libreadline8 The following NEW packages will be installed: gcc-14-base libamd-comgr2 libamd3 libamdhip64-5 libapbs3t64 libapt-pkg7.0 libarpack2t64 libcamd3 libccolamd3 libcholmod5 libcolamd3 libdb5.3t64 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libext2fs2t64 libfetk1.9t64 libfuse3-4 libhogweed6t64 libhsa-runtime64-1 libhsakmt1 libibmad5 libibumad3 liblastlog2-2 libllvm17t64 libnettle8t64 libopenmpi40 libpmix2t64 librdmacm1t64 libreadline8t64 libspqr4 libsqlite3-0 libssl3t64 libsuitesparseconfig7 libsuperlu7 libumfpack6 libunistring5 libz3-4 libze1 login.defs openssl-provider-legacy sqv The following packages will be upgraded: adduser apbs apbs-data apt base-files base-passwd bash bsdutils coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gcc-12-base gpgv grep gzip hostname ibverbs-providers init-system-helpers libacl1 libatomic1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libcap2 libcom-err2 libcrypt1 libdebconfclient0 libfabric1 libffi8 libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgomp1 libgpg-error0 libhwloc-plugins libhwloc15 libibverbs1 libidn2-0 liblapack3 liblz4-1 liblzma5 libmaloc1 libmd0 libmetis5 libmount1 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpciaccess0 libpcre2-8-0 libpsm-infinipath1 libpsm2-2 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libss2 libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libucx0 libudev1 libuuid1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libxxhash0 libzstd1 login logsave mawk mount ncurses-base ncurses-bin ocl-icd-libopencl1 passwd perl-base readline-common sed sysvinit-utils tar tzdata usr-is-merged util-linux util-linux-extra zlib1g 115 upgraded, 46 newly installed, 13 to remove and 0 not upgraded. Need to get 109 MB of archives. After this operation, 280 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 base-files amd64 13.8+deb13u1 [73.2 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.41-12 [2846 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.41-12 [637 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 debianutils amd64 5.23.2 [92.4 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.37-2+b5 [1500 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libcap2 amd64 1:2.75-10+b1 [28.8 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.8-1~deb13u1 [453 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.41-5 [110 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [304 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.5.1-1 [2437 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.5.1-1 [307 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 coreutils amd64 9.7-3 [3024 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 dash amd64 0.5.12-12 [98.5 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 diffutils amd64 1:3.10-4 [387 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 dpkg amd64 1.22.21 [1538 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 findutils amd64 4.10.0-3 [700 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 grep amd64 3.11-4 [431 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 gzip amd64 1.13-1 [138 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 hostname amd64 3.25 [11.0 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.4-2 [186 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libcap-ng0 amd64 0.8.5-4+b1 [17.6 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libaudit1 amd64 1:4.0.2-2+b2 [55.1 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 perl-base amd64 5.40.1-6 [1666 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 debconf all 1.5.91 [121 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libpam0g amd64 1.7.0-5 [69.9 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.46-1~deb13u1 [299 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libpam-modules-bin amd64 1.7.0-5 [49.1 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libpam-modules amd64 1.7.0-5 [179 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.41-5 [112 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5+20250216-2 [348 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5+20250216-2 [438 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 sed amd64 4.9-2 [329 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.41-5 [171 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-7 [914 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 liblastlog2-2 amd64 2.41-5 [28.5 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.41-5 [209 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.41-5 [143 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.41-5 [37.6 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.41-5 [1235 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 util-linux-extra amd64 2.41-5 [300 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 sqv amd64 1.3.0-3 [661 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 liblz4-1 amd64 1.10.0-4 [63.9 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.8.1-1 [309 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.8-1~deb13u1 [152 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 libapt-pkg7.0 amd64 3.0.3 [1113 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.280 [10.6 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 base-passwd amd64 3.6.7 [53.7 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-2 [131 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libsemanage-common all 3.8.1-1 [7812 B] Get:68 http://deb.debian.org/debian trixie/main amd64 libsepol2 amd64 3.8.1-1 [296 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.4-2 [1229 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 adduser all 3.152 [191 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 debian-archive-keyring all 2025.1 [179 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libseccomp2 amd64 2.6.0-2 [51.7 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 apt amd64 3.0.3 [1452 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 init-system-helpers all 1.69~deb13u1 [39.4 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5+20250216-2 [273 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.14-4 [34.1 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 apbs amd64 3.4.1-6+b3 [79.3 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 apbs-data all 3.4.1-6 [1489 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libmaloc1 amd64 1.5-2+b3 [84.5 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [174 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.10.1+dfsg-1 [32.3 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.10.1+dfsg-1 [49.2 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 libcamd3 amd64 1:7.10.1+dfsg-1 [45.9 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 libccolamd3 amd64 1:7.10.1+dfsg-1 [47.7 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.10.1+dfsg-1 [41.0 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 libcholmod5 amd64 1:7.10.1+dfsg-1 [648 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 libumfpack6 amd64 1:7.10.1+dfsg-1 [288 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 libfetk1.9t64 amd64 3.4.1-6+b3 [570 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 libapbs3t64 amd64 3.4.1-6+b3 [260 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libarpack2t64 amd64 3.9.1-6 [104 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-2 [182 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-2 [59.4 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 56.1-1 [62.4 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 56.1-1 [357 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1+deb13u1 [698 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-22+b2 [23.6 MB] Get:111 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get:112 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.124-2 [8288 B] Get:113 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.124-2 [39.0 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.124-2 [22.6 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-6 [8924 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libfuse3-4 amd64 3.17.2-3 [98.7 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 56.1-1 [30.0 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 56.1-1 [44.5 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.18.1+ds-2+b1 [1196 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 56.1-1 [70.4 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 2.1.0-1.1 [706 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 libze1 amd64 1.20.6-1 [473 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.12.0-4 [164 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.12.0-4 [23.5 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.7-1 [660 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 libopenmpi40 amd64 5.0.7-1 [2365 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libspqr4 amd64 1:7.10.1+dfsg-1 [155 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 logsave amd64 1.47.2-3+b3 [24.9 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libext2fs2t64 amd64 1.47.2-3+b3 [213 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 e2fsprogs amd64 1.47.2-3+b3 [591 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.41-5 [162 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 gpgv amd64 2.4.7-21+b3 [241 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 usr-is-merged all 39+nmu2 [5936 B] Get:153 http://deb.debian.org/debian trixie/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-4+deb13u1 [260 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:156 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:157 http://deb.debian.org/debian trixie/main amd64 gcc-12-base amd64 12.4.0-5 [43.9 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [170 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 libss2 amd64 1.47.2-3+b3 [29.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 109 MB in 1s (194 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11749 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-12_amd64.deb ... Unpacking dash (0.5.12-12) over (0.5.12-2) ... Setting up dash (0.5.12-12) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11746 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-4_amd64.deb ... Unpacking diffutils (1:3.10-4) over (1:3.8-4) ... Setting up diffutils (1:3.10-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11748 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3.1_amd64.deb ... Unpacking tar (1.35+dfsg-3.1) over (1.34+dfsg-1.2+deb12u1) ... Setting up tar (1.35+dfsg-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11749 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.21_amd64.deb ... Unpacking dpkg (1.22.21) over (1.21.22) ... Setting up dpkg (1.22.21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11734 files and directories currently installed.) Preparing to unpack .../findutils_4.10.0-3_amd64.deb ... Unpacking findutils (4.10.0-3) over (4.9.0-4) ... Setting up findutils (4.10.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11732 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-4_amd64.deb ... Unpacking grep (3.11-4) over (3.8-5) ... Setting up grep (3.11-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11732 files and directories currently installed.) Preparing to unpack .../archives/gzip_1.13-1_amd64.deb ... Unpacking gzip (1.13-1) over (1.12-1) ... Setting up gzip (1.13-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11732 files and directories currently installed.) Preparing to unpack .../hostname_3.25_amd64.deb ... Unpacking hostname (3.25) over (3.23+nmu1) ... Setting up hostname (3.25) ... Selecting previously unselected package login.defs. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11732 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.4-2_all.deb ... Unpacking login.defs (1:4.17.4-2) ... Replacing files in old package login (1:4.13+dfsg1-1+deb12u1) ... Setting up login.defs (1:4.17.4-2) ... Installing new version of config file /etc/login.defs ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11737 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11731 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11737 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.2-2_all.deb ... Unpacking libaudit-common (1:4.0.2-2) over (1:3.0.9-1) ... Setting up libaudit-common (1:4.0.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11737 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.5-4+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.5-4+b1) over (0.8.3-1+b3) ... Setting up libcap-ng0:amd64 (0.8.5-4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11737 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.2-2+b2_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.2-2+b2) over (1:3.0.9-1) ... Setting up libaudit1:amd64 (1:4.0.2-2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11738 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.38-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.38-1) over (1:4.4.33-2) ... Setting up libcrypt1:amd64 (1:4.4.38-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11738 files and directories currently installed.) Preparing to unpack .../perl-base_5.40.1-6_amd64.deb ... Unpacking perl-base (5.40.1-6) over (5.36.0-7+deb12u3) ... Setting up perl-base (5.40.1-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11743 files and directories currently installed.) Preparing to unpack .../debconf_1.5.91_all.deb ... Unpacking debconf (1.5.91) over (1.5.82) ... Setting up debconf (1.5.91) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11742 files and directories currently installed.) Preparing to unpack .../libpam0g_1.7.0-5_amd64.deb ... Unpacking libpam0g:amd64 (1.7.0-5) over (1.5.2-6+deb12u1) ... Setting up libpam0g:amd64 (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11741 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1~deb13u1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1~deb13u1) over (10.42-1) ... Setting up libpcre2-8-0:amd64 (10.46-1~deb13u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11741 files and directories currently installed.) Preparing to unpack .../libselinux1_3.8.1-1_amd64.deb ... Unpacking libselinux1:amd64 (3.8.1-1) over (3.4-1+b6) ... Setting up libselinux1:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11741 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.7.0-5_amd64.deb ... Unpacking libpam-modules-bin (1.7.0-5) over (1.5.2-6+deb12u1) ... Setting up libpam-modules-bin (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11732 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.7.0-5_amd64.deb ... Unpacking libpam-modules:amd64 (1.7.0-5) over (1.5.2-6+deb12u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.7.0-5) ... Installing new version of config file /etc/security/access.conf ... Installing new version of config file /etc/security/namespace.init ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11681 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.7.0-5_all.deb ... Unpacking libpam-runtime (1.7.0-5) over (1.5.2-6+deb12u1) ... Setting up libpam-runtime (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11741 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41-5_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41-5) over (1:4.13+dfsg1-1+deb12u1) ... Setting up login (1:4.16.0-2+really2.41-5) ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11643 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.5+20250216-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.4-4) ... Setting up libtinfo6:amd64 (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11643 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... Unpacking ncurses-bin (6.5+20250216-2) over (6.4-4) ... Setting up ncurses-bin (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11643 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11643 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41-5_amd64.deb ... Unpacking libblkid1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libblkid1:amd64 (2.41-5) ... Selecting previously unselected package libsqlite3-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11644 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.46.1-7_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-7) ... Setting up libsqlite3-0:amd64 (3.46.1-7) ... Selecting previously unselected package liblastlog2-2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11652 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41-5_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11659 files and directories currently installed.) Preparing to unpack .../libmount1_2.41-5_amd64.deb ... Unpacking libmount1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libmount1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11660 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41-5_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libsmartcols1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11661 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41-5_amd64.deb ... Unpacking libuuid1:amd64 (2.41-5) over (2.38.1-5+deb12u3) ... Setting up libuuid1:amd64 (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11662 files and directories currently installed.) Preparing to unpack .../util-linux_2.41-5_amd64.deb ... Unpacking util-linux (2.41-5) over (2.38.1-5+deb12u3) ... Setting up util-linux (2.41-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11627 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.41-5_amd64.deb ... Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.41-5) over (2.38.1-5+deb12u3) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux-extra (2.41-5) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11676 files and directories currently installed.) Removing libnettle8:amd64 (3.8.1-2) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11690 files and directories currently installed.) Preparing to unpack .../libudev1_257.8-1~deb13u1_amd64.deb ... Unpacking libudev1:amd64 (257.8-1~deb13u1) over (252.39-1~deb12u1) ... Setting up libudev1:amd64 (257.8-1~deb13u1) ... Selecting previously unselected package libapt-pkg7.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11690 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.0.3_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.280_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.280) over (0.270) ... Setting up libdebconfclient0:amd64 (0.280) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.7_amd64.deb ... Unpacking base-passwd (3.6.7) over (3.6.1) ... Setting up base-passwd (3.6.7) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11741 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-3_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-3) over (1:2.5.1-4) ... Setting up libattr1:amd64 (1:2.5.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11741 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2+b1_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2+b1) over (1.0.4-2) ... Setting up libmd0:amd64 (1.1.0-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11742 files and directories currently installed.) Preparing to unpack .../libbsd0_0.12.2-2_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-2) over (0.11.7-2) ... Setting up libbsd0:amd64 (0.12.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11742 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.8.1-1_all.deb ... Unpacking libsemanage-common (3.8.1-1) over (3.4-1) ... Setting up libsemanage-common (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11741 files and directories currently installed.) Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8.1-1) over (3.4-2.1) ... Setting up libsepol2:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11741 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.8.1-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.8.1-1) over (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11740 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.17.4-2_amd64.deb ... Unpacking passwd (1:4.17.4-2) over (1:4.13+dfsg1-1+deb12u1) ... Setting up passwd (1:4.17.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11766 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.152_all.deb ... Unpacking adduser (3.152) over (3.134) ... Setting up adduser (3.152) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11786 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.6.0-2_amd64.deb ... Unpacking libseccomp2:amd64 (2.6.0-2) over (2.5.4-1+deb12u1) ... Setting up libseccomp2:amd64 (2.6.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11786 files and directories currently installed.) Preparing to unpack .../archives/apt_3.0.3_amd64.deb ... Unpacking apt (3.0.3) over (2.6.1) ... Setting up apt (3.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11778 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69~deb13u1_all.deb ... Unpacking init-system-helpers (1.69~deb13u1) over (1.65.2+deb12u1) ... Setting up init-system-helpers (1.69~deb13u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11778 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... Unpacking ncurses-base (6.5+20250216-2) over (6.4-4) ... Setting up ncurses-base (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11776 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.14-4_amd64.deb ... Unpacking sysvinit-utils (3.14-4) over (3.06-4) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.14-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11776 files and directories currently installed.) Preparing to unpack .../apbs_3.4.1-6+b3_amd64.deb ... Unpacking apbs (3.4.1-6+b3) over (3.4.1-5) ... Preparing to unpack .../apbs-data_3.4.1-6_all.deb ... Unpacking apbs-data (3.4.1-6) over (3.4.1-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11777 files and directories currently installed.) Removing libapbs3:amd64 (3.4.1-5) ... Removing libfetk1.9:amd64 (3.4.1-5) ... dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: libmaloc1 depends on libreadline8 (>= 6.0). Removing libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../00-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Preparing to unpack .../01-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) over (8.2-1.3) ... Preparing to unpack .../02-libmaloc1_1.5-2+b3_amd64.deb ... Unpacking libmaloc1:amd64 (1.5-2+b3) over (1.5-1) ... Preparing to unpack .../03-libblas3_3.12.1-6_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-6) over (3.11.0-2) ... Selecting previously unselected package libsuperlu7:amd64. Preparing to unpack .../04-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... Preparing to unpack .../05-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Selecting previously unselected package libsuitesparseconfig7:amd64. Preparing to unpack .../06-libsuitesparseconfig7_1%3a7.10.1+dfsg-1_amd64.deb ... Unpacking libsuitesparseconfig7:amd64 (1:7.10.1+dfsg-1) ... Selecting previously unselected package libamd3:amd64. Preparing to unpack .../07-libamd3_1%3a7.10.1+dfsg-1_amd64.deb ... Unpacking libamd3:amd64 (1:7.10.1+dfsg-1) ... Selecting previously unselected package libcamd3:amd64. Preparing to unpack .../08-libcamd3_1%3a7.10.1+dfsg-1_amd64.deb ... Unpacking libcamd3:amd64 (1:7.10.1+dfsg-1) ... Selecting previously unselected package libccolamd3:amd64. Preparing to unpack .../09-libccolamd3_1%3a7.10.1+dfsg-1_amd64.deb ... Unpacking libccolamd3:amd64 (1:7.10.1+dfsg-1) ... Selecting previously unselected package libcolamd3:amd64. Preparing to unpack .../10-libcolamd3_1%3a7.10.1+dfsg-1_amd64.deb ... Unpacking libcolamd3:amd64 (1:7.10.1+dfsg-1) ... Preparing to unpack .../11-libgfortran5_14.2.0-19_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../12-liblapack3_3.12.1-6_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-6) over (3.11.0-2) ... Selecting previously unselected package libcholmod5:amd64. Preparing to unpack .../13-libcholmod5_1%3a7.10.1+dfsg-1_amd64.deb ... Unpacking libcholmod5:amd64 (1:7.10.1+dfsg-1) ... Selecting previously unselected package libumfpack6:amd64. Preparing to unpack .../14-libumfpack6_1%3a7.10.1+dfsg-1_amd64.deb ... Unpacking libumfpack6:amd64 (1:7.10.1+dfsg-1) ... Selecting previously unselected package libfetk1.9t64:amd64. Preparing to unpack .../15-libfetk1.9t64_3.4.1-6+b3_amd64.deb ... Unpacking libfetk1.9t64:amd64 (3.4.1-6+b3) ... Selecting previously unselected package libapbs3t64:amd64. Preparing to unpack .../16-libapbs3t64_3.4.1-6+b3_amd64.deb ... Unpacking libapbs3t64:amd64 (3.4.1-6+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11839 files and directories currently installed.) Removing libarpack2:amd64 (3.8.0-3) ... Selecting previously unselected package libarpack2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11833 files and directories currently installed.) Preparing to unpack .../libarpack2t64_3.9.1-6_amd64.deb ... Unpacking libarpack2t64:amd64 (3.9.1-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11840 files and directories currently installed.) Removing libopenmpi3:amd64 (4.1.4-3+b1) ... Removing libpmix2:amd64 (4.2.2-1+deb12u1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libevent-core-2.1-7t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11618 files and directories currently installed.) Preparing to unpack .../0-libevent-core-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. Preparing to unpack .../1-libevent-pthreads-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Preparing to unpack .../2-libnl-route-3-200_3.7.0-2_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.7.0-2) over (3.7.0-0.2+b1) ... Preparing to unpack .../3-libnl-3-200_3.7.0-2_amd64.deb ... Unpacking libnl-3-200:amd64 (3.7.0-2) over (3.7.0-0.2+b1) ... Preparing to unpack .../4-libibverbs1_56.1-1_amd64.deb ... Unpacking libibverbs1:amd64 (56.1-1) over (44.0-2) ... Preparing to unpack .../5-ibverbs-providers_56.1-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (56.1-1) over (44.0-2) ... Preparing to unpack .../6-libnuma1_2.0.19-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.19-1) over (2.0.16-1) ... Preparing to unpack .../7-libpsm2-2_11.2.185-2.1_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2.1) over (11.2.185-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../8-libedit2_3.1-20250104-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20250104-1) ... Preparing to unpack .../9-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11643 files and directories currently installed.) Preparing to unpack .../00-libxml2_2.12.7+dfsg+really2.9.14-2.1+deb13u1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1+deb13u1) over (2.9.14+dfsg-1.3~deb12u4) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../01-libz3-4_4.13.3-1_amd64.deb ... Unpacking libz3-4:amd64 (4.13.3-1) ... Selecting previously unselected package libllvm17t64:amd64. Preparing to unpack .../02-libllvm17t64_1%3a17.0.6-22+b2_amd64.deb ... Unpacking libllvm17t64:amd64 (1:17.0.6-22+b2) ... Selecting previously unselected package libamd-comgr2:amd64. Preparing to unpack .../03-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b2_amd64.deb ... Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../04-libdrm-common_2.4.124-2_all.deb ... Unpacking libdrm-common (2.4.124-2) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../05-libdrm2_2.4.124-2_amd64.deb ... Unpacking libdrm2:amd64 (2.4.124-2) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../06-libdrm-amdgpu1_2.4.124-2_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.124-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../07-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package libhsakmt1:amd64. Preparing to unpack .../08-libhsakmt1_6.2.4+ds-1_amd64.deb ... Unpacking libhsakmt1:amd64 (6.2.4+ds-1) ... Selecting previously unselected package libhsa-runtime64-1:amd64. Preparing to unpack .../09-libhsa-runtime64-1_6.1.2-3_amd64.deb ... Unpacking libhsa-runtime64-1:amd64 (6.1.2-3) ... Selecting previously unselected package libamdhip64-5:amd64. Preparing to unpack .../10-libamdhip64-5_5.7.1-6_amd64.deb ... Unpacking libamdhip64-5:amd64 (5.7.1-6) ... Selecting previously unselected package libfuse3-4:amd64. Preparing to unpack .../11-libfuse3-4_3.17.2-3_amd64.deb ... Unpacking libfuse3-4:amd64 (3.17.2-3) ... Selecting previously unselected package libibumad3:amd64. Preparing to unpack .../12-libibumad3_56.1-1_amd64.deb ... Unpacking libibumad3:amd64 (56.1-1) ... Selecting previously unselected package libibmad5:amd64. Preparing to unpack .../13-libibmad5_56.1-1_amd64.deb ... Unpacking libibmad5:amd64 (56.1-1) ... Preparing to unpack .../14-libucx0_1.18.1+ds-2+b1_amd64.deb ... Unpacking libucx0:amd64 (1.18.1+ds-2+b1) over (1.13.1-1) ... dpkg: librdmacm1:amd64: dependency problems, but removing anyway as you requested: libfabric1:amd64 depends on librdmacm1 (>= 23). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11740 files and directories currently installed.) Removing librdmacm1:amd64 (44.0-2) ... Selecting previously unselected package librdmacm1t64:amd64. (Reading database ... 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Removing libext2fs2:amd64 (1.47.0-2+b2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11827 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.2-3+b3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.2-3+b3) ... Setting up libext2fs2t64:amd64 (1.47.2-3+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11844 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.2-3+b3_amd64.deb ... Unpacking e2fsprogs (1.47.2-3+b3) over (1.47.0-2+b2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../mount_2.41-5_amd64.deb ... Unpacking mount (2.41-5) over (2.38.1-5+deb12u3) ... Preparing to unpack .../libgpg-error0_1.51-4_amd64.deb ... Unpacking libgpg-error0:amd64 (1.51-4) over (1.46-1) ... Setting up libgpg-error0:amd64 (1.51-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11844 files and directories currently installed.) Preparing to unpack .../libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Preparing to unpack .../libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) over (2.3.3-1+b1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libidn2-0:amd64 (2.3.8-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11850 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) over (4.19.0-2+deb12u1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11850 files and directories currently installed.) Preparing to unpack .../usr-is-merged_39+nmu2_all.deb ... Unpacking usr-is-merged (39+nmu2) over (37~deb12u1) ... Setting up usr-is-merged (39+nmu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11851 files and directories currently installed.) Preparing to unpack .../0-mawk_1.3.4.20250131-1_amd64.deb ... Unpacking mawk (1.3.4.20250131-1) over (1.3.4.20200120-3.1) ... Preparing to unpack .../1-tzdata_2025b-4+deb13u1_all.deb ... Unpacking tzdata (2025b-4+deb13u1) over (2025b-0+deb12u2) ... Preparing to unpack .../2-libatomic1_14.2.0-19_amd64.deb ... Unpacking libatomic1:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../3-libquadmath0_14.2.0-19_amd64.deb ... Unpacking libquadmath0:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../4-gcc-12-base_12.4.0-5_amd64.deb ... Unpacking gcc-12-base:amd64 (12.4.0-5) over (12.2.0-14+deb12u1) ... Preparing to unpack .../5-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) over (1.47.0-2+b2) ... Preparing to unpack .../6-libmetis5_5.1.0.dfsg-7+b2_amd64.deb ... Unpacking libmetis5:amd64 (5.1.0.dfsg-7+b2) over (5.1.0.dfsg-7) ... Preparing to unpack .../7-libpsm-infinipath1_3.3+20.604758e7-6.4_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.4) over (3.3+20.604758e7-6.2) ... Preparing to unpack .../8-libss2_1.47.2-3+b3_amd64.deb ... Unpacking libss2:amd64 (1.47.2-3+b3) over (1.47.0-2+b2) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu': Directory not empty Setting up libpciaccess0:amd64 (0.17-3+b3) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libibumad3:amd64 (56.1-1) ... Setting up libmetis5:amd64 (5.1.0.dfsg-7+b2) ... Setting up libibmad5:amd64 (56.1-1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up apbs-data (3.4.1-6) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libze1:amd64 (1.20.6-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up gcc-12-base:amd64 (12.4.0-5) ... Setting up tzdata (2025b-4+deb13u1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Sep 24 23:42:01 UTC 2025. Universal Time is now: Wed Sep 24 23:42:01 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libblas3:amd64 (3.12.1-6) ... Setting up libmunge2:amd64 (0.5.16-1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libquadmath0:amd64 (14.2.0-19) ... Setting up libhwloc15:amd64 (2.12.0-4) ... Setting up libatomic1:amd64 (14.2.0-19) ... Setting up libss2:amd64 (1.47.2-3+b3) ... Setting up logsave (1.47.2-3+b3) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up libnuma1:amd64 (2.0.19-1) ... Setting up mount (2.41-5) ... Setting up ocl-icd-libopencl1:amd64 (2.3.3-1) ... Setting up libnl-3-200:amd64 (3.7.0-2) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up libsuitesparseconfig7:amd64 (1:7.10.1+dfsg-1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up mawk (1.3.4.20250131-1) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.4) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfuse3-4:amd64 (3.17.2-3) ... Setting up libdrm-common (2.4.124-2) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1+deb13u1) ... Setting up liblapack3:amd64 (3.12.1-6) ... Setting up libarpack2t64:amd64 (3.9.1-6) ... Setting up libamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libcolamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up e2fsprogs (1.47.2-3+b3) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/mke2fs.conf ... Setting up libcamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libsuperlu7:amd64 (7.0.1+dfsg1-2) ... Setting up libnl-route-3-200:amd64 (3.7.0-2) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up libllvm17t64:amd64 (1:17.0.6-22+b2) ... Setting up libccolamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libdrm2:amd64 (2.4.124-2) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.124-2) ... Setting up libmaloc1:amd64 (1.5-2+b3) ... Setting up libibverbs1:amd64 (56.1-1) ... Setting up libcholmod5:amd64 (1:7.10.1+dfsg-1) ... Setting up ibverbs-providers:amd64 (56.1-1) ... Setting up libspqr4:amd64 (1:7.10.1+dfsg-1) ... Setting up libhwloc-plugins:amd64 (2.12.0-4) ... Setting up libpmix2t64:amd64 (5.0.7-1) ... Setting up libumfpack6:amd64 (1:7.10.1+dfsg-1) ... Setting up librdmacm1t64:amd64 (56.1-1) ... Setting up libfetk1.9t64:amd64 (3.4.1-6+b3) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up libfabric1:amd64 (2.1.0-1.1) ... Setting up libapbs3t64:amd64 (3.4.1-6+b3) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up libamdhip64-5:amd64 (5.7.1-6) ... Setting up libucx0:amd64 (1.18.1+ds-2+b1) ... Setting up libopenmpi40:amd64 (5.0.7-1) ... Setting up apbs (3.4.1-6+b3) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for debianutils (5.23.2) ... 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-yf', 'dist-upgrade'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m31.2s DUMP: cc6be03135582e5dd4c9ee869186ad39 - 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'show', '--no-all-versions', 'apbs'] 0m31.5s DUMP: Package: apbs Source: apbs (3.4.1-6) Version: 3.4.1-6+b3 Installed-Size: 373 Maintainer: Debichem Team Architecture: amd64 Depends: apbs-data (= 3.4.1-6), libapbs3t64 (= 3.4.1-6+b3), libjs-mathjax, libamd3 (>= 1:7.0.1), libarpack2t64 (>= 2.1), libblas3 | libblas.so.3, libc6 (>= 2.34), libcamd3 (>= 1:7.0.1), libccolamd3 (>= 1:7.0.1), libcholmod5 (>= 1:7.3.1), libcolamd3 (>= 1:7.0.1), libfetk1.9t64 (>= 3.4.1), libgomp1 (>= 4.2.1), libmaloc1 (>= 0.2-1), libopenmpi40 (>= 5.0.6), libspqr4 (>= 1:7.8.3+dfsg), libstdc++6 (>= 4.1.1), libsuitesparseconfig7 (>= 1:7.0.1), libsuperlu7 (>= 7.0.0+dfsg1), libumfpack6 (>= 1:7.0.1) Description-en: Adaptive Poisson Boltzmann Solver APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including: . * simulation of diffusional processes to determine ligand-protein and protein-protein binding kinetics, * implicit solvent molecular dynamics of biomolecules , * solvation and binding energy calculations to determine ligand-protein and protein-protein equilibrium binding constants and aid in rational drug design, * and biomolecular titration studies. . APBS was designed to efficiently evaluate electrostatic properties for such simulations for a wide range of length scales to enable the investigation of molecules with tens to millions of atoms. . This package contains the apbs program and utilities. Description-md5: 2babbf799be2526f2121cce538f5aa47 Homepage: http://www.poissonboltzmann.org/ Tag: field::chemistry, implemented-in::c, interface::commandline, role::program, scope::utility Section: science Priority: optional Filename: pool/main/a/apbs/apbs_3.4.1-6+b3_amd64.deb Size: 79268 MD5sum: df383be0308a158af795c694c8b66d77 SHA256: fb3ee9032823b1454fb29b583a4f2d62d307319a67d735da895ceaa8963e3bcf 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'show', '--no-all-versions', 'apbs'] 0m31.5s INFO: apt-cache knows about the following packages: apbs 0m31.5s INFO: Running scripts pre_install 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_database-server'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_database-server'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_exceptions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_exceptions'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_extras'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_extras'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy'] 0m31.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.1,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy', 'apbs'] 0m31.7s DUMP: apbs: Installed: 3.4.1-6+b3 Candidate: 3.4.1-6+b3 Version table: *** 3.4.1-6+b3 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy', 'apbs'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-y', 'install', 'apbs'] 0m32.2s DUMP: Reading package lists... Building dependency tree... Reading state information... apbs is already the newest version (3.4.1-6+b3). The following packages were automatically installed and are no longer required: libamd2 libatomic1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libicu72 libmetis5 libpsm-infinipath1 libquadmath0 libspqr2 libsuitesparseconfig5 libsuperlu5 libumfpack5 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-y', 'install', 'apbs'] 0m32.2s INFO: Running scripts post_install 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_install_exceptions'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_install_exceptions'] 0m32.2s INFO: Running scripts post_distupgrade 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_exceptions'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_exceptions'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_zz_backports'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_zz_backports'] 0m32.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m32.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m32.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmprn5daac2 to testing 0m32.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m32.8s INFO: Running scripts pre_distupgrade 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_exceptions'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_exceptions'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'update'] 0m34.5s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [147 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9723 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6472 kB] Fetched 16.3 MB in 1s (15.4 MB/s) Reading package lists... 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'update'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-yf', 'dist-upgrade'] 0m42.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gcc-14-base libamd2 libatomic1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libicu72 libmetis5 libpsm-infinipath1 libquadmath0 libspqr2 libsuitesparseconfig5 libsuperlu5 libumfpack5 libxml2 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-15-base libxml2-16 The following packages will be upgraded: adduser apbs apbs-data apt base-files bash bsdutils gcc-12-base gcc-14-base gpgv ibverbs-providers init-system-helpers libamd3 libapbs3t64 libapt-pkg7.0 libatomic1 libaudit-common libaudit1 libblas3 libblkid1 libcamd3 libccolamd3 libcholmod5 libcolamd3 libdrm-amdgpu1 libdrm-common libdrm2 libelf1t64 libfetk1.9t64 libffi8 libfuse3-4 libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgomp1 libgpg-error0 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libidn2-0 liblapack3 liblastlog2-2 libllvm17t64 liblzma5 libmount1 libnl-3-200 libnl-route-3-200 libopenmpi40 libpcre2-8-0 libpmix2t64 libquadmath0 librdmacm1t64 libreadline8t64 libsmartcols1 libspqr4 libsqlite3-0 libssl3t64 libstdc++6 libsuitesparseconfig7 libsystemd0 libucx0 libudev1 libumfpack6 libuuid1 libxml2 libze1 libzstd1 login login.defs mount openssl-provider-legacy passwd readline-common tzdata util-linux util-linux-extra 79 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 56.7 MB of archives. After this operation, 6454 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-1 [1556 kB] Get:3 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.1-3 [117 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.2-1 [60.4 kB] Get:6 http://deb.debian.org/debian forky/main amd64 util-linux-extra amd64 2.41.1-3 [337 kB] Get:7 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.1-3 [29.3 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.1-3 [38.9 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.1-3 [188 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.1-3 [229 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.1-3 [157 kB] Get:12 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.1-3 [1306 kB] Get:13 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.1-3 [172 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:15 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:17 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.1-1.1 [316 kB] Get:18 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.3-1 [308 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-1.1 [320 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.3-1 [2445 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 258-1 [466 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 258-1 [156 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.5 [1182 kB] Get:25 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:26 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:27 http://deb.debian.org/debian forky/main amd64 adduser all 3.153 [191 kB] Get:28 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.5 [1479 kB] Get:29 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:30 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.1-3 [119 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:33 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:34 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get:35 http://deb.debian.org/debian forky/main amd64 apbs amd64 3.4.1-7 [79.1 kB] Get:36 http://deb.debian.org/debian forky/main amd64 apbs-data all 3.4.1-7 [1479 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 15.2.0-4 [140 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libsuitesparseconfig7 amd64 1:7.11.0+dfsg-2 [33.4 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libamd3 amd64 1:7.11.0+dfsg-2 [51.0 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get:41 http://deb.debian.org/debian forky/main amd64 libcamd3 amd64 1:7.11.0+dfsg-2 [47.8 kB] Get:42 http://deb.debian.org/debian forky/main amd64 libccolamd3 amd64 1:7.11.0+dfsg-2 [49.7 kB] Get:43 http://deb.debian.org/debian forky/main amd64 libcolamd3 amd64 1:7.11.0+dfsg-2 [42.4 kB] Get:44 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get:45 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 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6.0.0+really5.0.8-1 [668 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libibverbs1 amd64 56.1-1+b1 [63.0 kB] Get:58 http://deb.debian.org/debian forky/main amd64 ibverbs-providers amd64 56.1-1+b1 [361 kB] Get:59 http://deb.debian.org/debian forky/main amd64 libfuse3-4 amd64 3.17.4-1 [99.2 kB] Get:60 http://deb.debian.org/debian forky/main amd64 libibumad3 amd64 56.1-1+b1 [30.1 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libibmad5 amd64 56.1-1+b1 [44.9 kB] Get:62 http://deb.debian.org/debian forky/main amd64 libucx0 amd64 1.19.0+ds-1 [1336 kB] Get:63 http://deb.debian.org/debian forky/main amd64 libopenmpi40 amd64 5.0.8-10+b1 [2414 kB] Get:64 http://deb.debian.org/debian forky/main amd64 libspqr4 amd64 1:7.11.0+dfsg-2 [164 kB] Get:65 http://deb.debian.org/debian forky/main amd64 gcc-12-base amd64 12.5.0-6 [45.1 kB] Get:66 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 15.2.0-4 [9508 B] Get:67 http://deb.debian.org/debian forky/main amd64 libquadmath0 amd64 15.2.0-4 [145 kB] Get:68 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get:69 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get:70 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get:71 http://deb.debian.org/debian forky/main amd64 gpgv amd64 2.4.8-3 [241 kB] Get:72 http://deb.debian.org/debian forky/main amd64 libdrm-common all 2.4.125-2 [8576 B] Get:73 http://deb.debian.org/debian forky/main amd64 libdrm2 amd64 2.4.125-2 [39.1 kB] Get:74 http://deb.debian.org/debian forky/main amd64 libdrm-amdgpu1 amd64 2.4.125-2 [23.2 kB] Get:75 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get:76 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:77 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get:78 http://deb.debian.org/debian forky/main amd64 libllvm17t64 amd64 1:17.0.6-22+b3 [23.6 MB] Get:79 http://deb.debian.org/debian forky/main amd64 librdmacm1t64 amd64 56.1-1+b1 [71.0 kB] Get:80 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:81 http://deb.debian.org/debian forky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.2 [698 kB] Preconfiguring packages ... 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Leaving 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) over (8.2-6) ... Preparing to unpack .../48-libxml2_2.12.7+dfsg+really2.9.14-2.2_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.2) over (2.12.7+dfsg+really2.9.14-2.1+deb13u1) ... Setting up libgpg-error0:amd64 (1.55-2) ... Setting up gcc-14-base:amd64 (14.3.0-8) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libibumad3:amd64 (56.1-1+b1) ... Setting up libgcrypt20:amd64 (1.11.2-2) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libibmad5:amd64 (56.1-1+b1) ... Setting up apbs-data (3.4.1-7) ... Setting up libgomp1:amd64 (15.2.0-4) ... Setting up libze1:amd64 (1.24.1-2) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up gcc-12-base:amd64 (12.5.0-6) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Sep 24 23:42:14 UTC 2025. Universal Time is now: Wed Sep 24 23:42:14 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libblas3:amd64 (3.12.1-7) ... Setting up libquadmath0:amd64 (15.2.0-4) ... Setting up libhwloc15:amd64 (2.12.2-1) ... Setting up libatomic1:amd64 (15.2.0-4) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up mount (2.41.1-3) ... Setting up gpgv (2.4.8-3) ... Setting up libnl-3-200:amd64 (3.11.0-2) ... Setting up libsuitesparseconfig7:amd64 (1:7.11.0+dfsg-2) ... 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Processing triggers for debianutils (5.23.2) ... 0m42.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-yf', 'dist-upgrade'] 0m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m44.2s DUMP: a149af564cc03670e55ea0d1eeda38a6 - 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'show', '--no-all-versions', 'apbs'] 0m44.4s DUMP: Package: apbs Version: 3.4.1-7 Installed-Size: 376 Maintainer: Debichem Team Architecture: amd64 Depends: apbs-data (= 3.4.1-7), libapbs3t64 (= 3.4.1-7), libjs-mathjax, libamd3 (>= 1:7.0.1), libarpack2t64 (>= 2.1), libblas3 | libblas.so.3, libc6 (>= 2.34), libcamd3 (>= 1:7.0.1), libccolamd3 (>= 1:7.0.1), libcholmod5 (>= 1:7.3.1), libcolamd3 (>= 1:7.0.1), libfetk1.9t64 (>= 3.4.1), libgomp1 (>= 4.2.1), libmaloc1 (>= 0.2-1), libopenmpi40 (>= 5.0.8), libspqr4 (>= 1:7.11.0+dfsg), libstdc++6 (>= 4.1.1), libsuitesparseconfig7 (>= 1:7.0.1), libsuperlu7 (>= 7.0.1+dfsg1), libumfpack6 (>= 1:7.0.1) Description-en: Adaptive Poisson Boltzmann Solver APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including: . * simulation of diffusional processes to determine ligand-protein and protein-protein binding kinetics, * implicit solvent molecular dynamics of biomolecules , * solvation and binding energy calculations to determine ligand-protein and protein-protein equilibrium binding constants and aid in rational drug design, * and biomolecular titration studies. . APBS was designed to efficiently evaluate electrostatic properties for such simulations for a wide range of length scales to enable the investigation of molecules with tens to millions of atoms. . This package contains the apbs program and utilities. Description-md5: 2babbf799be2526f2121cce538f5aa47 Homepage: http://www.poissonboltzmann.org/ Tag: field::chemistry, implemented-in::c, interface::commandline, role::program, scope::utility Section: science Priority: optional Filename: pool/main/a/apbs/apbs_3.4.1-7_amd64.deb Size: 79136 MD5sum: 4941bd51ef227b5360828aecd0c10e35 SHA256: 109578ea5c470901682220b8e6044cb7c02a4d8a12209c1da4adc1ee6bdaa57f 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'show', '--no-all-versions', 'apbs'] 0m44.4s INFO: apt-cache knows about the following packages: apbs 0m44.4s INFO: Running scripts pre_install 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_database-server'] 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_database-server'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_exceptions'] 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_exceptions'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_extras'] 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_extras'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture'] 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy'] 0m44.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy', 'apbs'] 0m44.5s DUMP: apbs: Installed: 3.4.1-7 Candidate: 3.4.1-7 Version table: *** 3.4.1-7 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy', 'apbs'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-y', 'install', 'apbs'] 0m45.2s DUMP: Reading package lists... Building dependency tree... Reading state information... apbs is already the newest version (3.4.1-7). The following packages were automatically installed and are no longer required: gcc-14-base libamd2 libatomic1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libicu72 libmetis5 libpsm-infinipath1 libquadmath0 libspqr2 libsuitesparseconfig5 libsuperlu5 libumfpack5 libxml2 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-y', 'install', 'apbs'] 0m45.2s INFO: Running scripts post_install 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_install_exceptions'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_install_exceptions'] 0m45.2s INFO: Running scripts post_distupgrade 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_exceptions'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_exceptions'] 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_zz_backports'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_distupgrade_zz_backports'] 0m45.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m45.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m45.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m46.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m46.6s INFO: Running scripts pre_install 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_database-server'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_database-server'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_exceptions'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_exceptions'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_extras'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_extras'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy'] 0m46.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy', 'apbs'] 0m46.7s DUMP: apbs: Installed: 3.4.1-7 Candidate: 3.4.1-7 Version table: *** 3.4.1-7 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 0m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-cache', 'policy', 'apbs'] 0m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-y', 'install', 'apbs=3.4.1-7'] 0m47.2s DUMP: Reading package lists... Building dependency tree... Reading state information... apbs is already the newest version (3.4.1-7). The following packages were automatically installed and are no longer required: gcc-14-base libamd2 libatomic1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libicu72 libmetis5 libpsm-infinipath1 libquadmath0 libspqr2 libsuitesparseconfig5 libsuperlu5 libumfpack5 libxml2 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', '-y', 'install', 'apbs=3.4.1-7'] 0m47.2s INFO: Running scripts post_install 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_install_exceptions'] 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_install_exceptions'] 0m47.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m48.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m48.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmprn5daac2', '-ac', '--ignore-obsolete'] 0m50.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmprn5daac2', '-ac', '--ignore-obsolete'] 0m50.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m50.4s DUMP: 0.15.9~deb12u1 0m50.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m50.4s INFO: Running adequate version 0.15.9~deb12u1 now. 0m50.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apbs'] 0m50.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apbs'] 0m50.5s INFO: Running scripts pre_remove 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m53.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m53.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_exceptions'] 0m53.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/pre_remove_exceptions'] 0m53.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m53.4s DUMP: install ok installed adduser adduser 3.153 install ok installed apbs apbs 3.4.1-7 install ok installed apbs-data apbs-data 3.4.1-7 install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.1-3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed e2fsprogs e2fsprogs 1.47.2-3+b3 install ok installed findutils findutils 4.10.0-3 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-12-base:amd64 gcc-12-base 12.5.0-6 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed gpgv gpgv 2.4.8-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed ibverbs-providers:amd64 ibverbs-providers 56.1-1+b1 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libamd-comgr2:amd64 libamd-comgr2 6.0+git20231212.4510c28+dfsg-3+b2 install ok installed libamd2:amd64 libamd2 1:5.12.0+dfsg-2 install ok installed libamd3:amd64 libamd3 1:7.11.0+dfsg-2 install ok installed libamdhip64-5:amd64 libamdhip64-5 5.7.1-6 install ok installed libapbs3t64:amd64 libapbs3t64 3.4.1-7 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libarpack2t64:amd64 libarpack2t64 3.9.1-6 install ok installed libatomic1:amd64 libatomic1 15.2.0-4 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblas3:amd64 libblas3 3.12.1-7 install ok installed libblkid1:amd64 libblkid1 2.41.1-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcamd2:amd64 libcamd2 1:5.12.0+dfsg-2 install ok installed libcamd3:amd64 libcamd3 1:7.11.0+dfsg-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libccolamd2:amd64 libccolamd2 1:5.12.0+dfsg-2 install ok installed libccolamd3:amd64 libccolamd3 1:7.11.0+dfsg-2 install ok installed libcholmod3:amd64 libcholmod3 1:5.12.0+dfsg-2 install ok installed libcholmod5:amd64 libcholmod5 1:7.11.0+dfsg-2 install ok installed libcolamd2:amd64 libcolamd2 1:5.12.0+dfsg-2 install ok installed libcolamd3:amd64 libcolamd3 1:7.11.0+dfsg-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.125-2 install ok installed libdrm-common libdrm-common 2.4.125-2 install ok installed libdrm2:amd64 libdrm2 2.4.125-2 install ok installed libedit2:amd64 libedit2 3.1-20250104-1 install ok installed libelf1t64:amd64 libelf1t64 0.193-3 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.12-stable-10+b1 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.12-stable-10+b1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-3+b3 install ok installed libfabric1:amd64 libfabric1 2.1.0-1.1 install ok installed libfetk1.9t64:amd64 libfetk1.9t64 3.4.1-7 install ok installed libffi8:amd64 libffi8 3.5.2-2 install ok installed libfuse3-4:amd64 libfuse3-4 3.17.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.2-2 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u5 install ok installed libgomp1:amd64 libgomp1 15.2.0-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.55-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhsa-runtime64-1:amd64 libhsa-runtime64-1 6.1.2-3 install ok installed libhsakmt1:amd64 libhsakmt1 6.2.4+ds-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.12.2-1 install ok installed libhwloc15:amd64 libhwloc15 2.12.2-1 install ok installed libibmad5:amd64 libibmad5 56.1-1+b1 install ok installed libibumad3:amd64 libibumad3 56.1-1+b1 install ok installed libibverbs1:amd64 libibverbs1 56.1-1+b1 install ok installed libicu72:amd64 libicu72 72.1-3+deb12u1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed liblapack3:amd64 liblapack3 3.12.1-7 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-3 install ok installed libllvm17t64:amd64 libllvm17t64 1:17.0.6-22+b3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmaloc1:amd64 libmaloc1 1.5-2+b3 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmetis5:amd64 libmetis5 5.1.0.dfsg-7+b2 install ok installed libmount1:amd64 libmount1 2.41.1-3 install ok installed libmunge2:amd64 libmunge2 0.5.16-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.11.0-2 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.11.0-2 install ok installed libnuma1:amd64 libnuma1 2.0.19-1 install ok installed libopenmpi40:amd64 libopenmpi40 5.0.8-10+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libpmix2t64:amd64 libpmix2t64 6.0.0+really5.0.8-1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.4 install ok installed libpsm2-2 libpsm2-2 11.2.185-2.1 install ok installed libquadmath0:amd64 libquadmath0 15.2.0-4 install ok installed librdmacm1t64:amd64 librdmacm1t64 56.1-1+b1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-3 install ok installed libspqr2:amd64 libspqr2 1:5.12.0+dfsg-2 install ok installed libspqr4:amd64 libspqr4 1:7.11.0+dfsg-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libss2:amd64 libss2 1.47.2-3+b3 install ok installed libssl3t64:amd64 libssl3t64 3.5.3-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsuitesparseconfig5:amd64 libsuitesparseconfig5 1:5.12.0+dfsg-2 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.11.0+dfsg-2 install ok installed libsuperlu5:amd64 libsuperlu5 5.3.0+dfsg1-2+b1 install ok installed libsuperlu7:amd64 libsuperlu7 7.0.1+dfsg1-2 install ok installed libsystemd0:amd64 libsystemd0 258-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libucx0:amd64 libucx0 1.19.0+ds-1 install ok installed libudev1:amd64 libudev1 258-1 install ok installed libumfpack5:amd64 libumfpack5 1:5.12.0+dfsg-2 install ok installed libumfpack6:amd64 libumfpack6 1:7.11.0+dfsg-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41.1-3 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-2.2 install ok installed libxml2-16:amd64 libxml2-16 2.14.5+dfsg-0.2 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libze1:amd64 libze1 1.24.1-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.1-3 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed logsave logsave 1.47.2-3+b3 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.3-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.3-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed readline-common readline-common 8.3-3 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41.1-3 install ok installed util-linux-extra util-linux-extra 2.41.1-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m53.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m53.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'remove', '--allow-remove-essential', 'apbs-data', 'fonts-mathjax', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libamdhip64-5:amd64', 'libapbs3t64:amd64', 'libarpack2t64:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libfetk1.9t64:amd64', 'libfuse3-4:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libllvm17t64:amd64', 'libmaloc1:amd64', 'libmetis5:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpmix2t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libspqr2:amd64', 'libspqr4:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libsuperlu5:amd64', 'libsuperlu7:amd64', 'libucx0:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'ocl-icd-libopencl1:amd64', 'readline-common', 'apbs'] 0m54.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: gcc-14-base Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: apbs apbs-data fonts-mathjax ibverbs-providers libamd-comgr2 libamd2 libamd3 libamdhip64-5 libapbs3t64 libarpack2t64 libatomic1 libblas3 libcamd2 libcamd3 libccolamd2 libccolamd3 libcholmod3 libcholmod5 libcolamd2 libcolamd3 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libfetk1.9t64 libfuse3-4 libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libicu72 libjs-mathjax liblapack3 libllvm17t64 libmaloc1 libmetis5 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1t64 libreadline8t64 libspqr2 libspqr4 libsuitesparseconfig5 libsuitesparseconfig7 libsuperlu5 libsuperlu7 libucx0 libumfpack5 libumfpack6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-16 libxnvctrl0 libz3-4 libze1 ocl-icd-libopencl1 readline-common 0 upgraded, 0 newly installed, 79 to remove and 0 not upgraded. After this operation, 408 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11076 files and directories currently installed.) Removing apbs (3.4.1-7) ... Removing apbs-data (3.4.1-7) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing libopenmpi40:amd64 (5.0.8-10+b1) ... Removing libucx0:amd64 (1.19.0+ds-1) ... Removing libfabric1:amd64 (2.1.0-1.1) ... Removing ibverbs-providers:amd64 (56.1-1+b1) ... Removing libamdhip64-5:amd64 (5.7.1-6) ... Removing libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Removing libspqr2:amd64 (1:5.12.0+dfsg-2) ... Removing libumfpack5:amd64 (1:5.12.0+dfsg-2) ... Removing libcholmod3:amd64 (1:5.12.0+dfsg-2) ... Removing libamd2:amd64 (1:5.12.0+dfsg-2) ... Removing libapbs3t64:amd64 (3.4.1-7) ... Removing libfetk1.9t64:amd64 (3.4.1-7) ... Removing libumfpack6:amd64 (1:7.11.0+dfsg-2) ... Removing libspqr4:amd64 (1:7.11.0+dfsg-2) ... Removing libcholmod5:amd64 (1:7.11.0+dfsg-2) ... Removing libamd3:amd64 (1:7.11.0+dfsg-2) ... Removing libarpack2t64:amd64 (3.9.1-6) ... Removing libatomic1:amd64 (15.2.0-4) ... Removing libsuperlu5:amd64 (5.3.0+dfsg1-2+b1) ... Removing libsuperlu7:amd64 (7.0.1+dfsg1-2) ... Removing liblapack3:amd64 (3.12.1-7) ... Removing libblas3:amd64 (3.12.1-7) ... Removing libcamd2:amd64 (1:5.12.0+dfsg-2) ... Removing libcamd3:amd64 (1:7.11.0+dfsg-2) ... Removing libccolamd2:amd64 (1:5.12.0+dfsg-2) ... Removing libccolamd3:amd64 (1:7.11.0+dfsg-2) ... Removing libcolamd2:amd64 (1:5.12.0+dfsg-2) ... Removing libcolamd3:amd64 (1:7.11.0+dfsg-2) ... Removing libhsa-runtime64-1:amd64 (6.1.2-3) ... Removing libhsakmt1:amd64 (6.2.4+ds-1) ... Removing libdrm-amdgpu1:amd64 (2.4.125-2) ... Removing libdrm2:amd64 (2.4.125-2) ... Removing libdrm-common (2.4.125-2) ... Removing libllvm17t64:amd64 (1:17.0.6-22+b3) ... Removing libedit2:amd64 (3.1-20250104-1) ... Removing libelf1t64:amd64 (0.193-3) ... Removing libpmix2t64:amd64 (6.0.0+really5.0.8-1) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libfuse3-4:amd64 (3.17.4-1) ... Removing libgfortran5:amd64 (15.2.0-4) ... Removing libsuitesparseconfig7:amd64 (1:7.11.0+dfsg-2) ... Removing libgomp1:amd64 (15.2.0-4) ... Removing libhwloc-plugins:amd64 (2.12.2-1) ... Removing libhwloc15:amd64 (2.12.2-1) ... Removing libibmad5:amd64 (56.1-1+b1) ... Removing libibumad3:amd64 (56.1-1+b1) ... Removing librdmacm1t64:amd64 (56.1-1+b1) ... Removing libibverbs1:amd64 (56.1-1+b1) ... Removing libicu72:amd64 (72.1-3+deb12u1) ... Removing libmaloc1:amd64 (1.5-2+b3) ... Removing libmetis5:amd64 (5.1.0.dfsg-7+b2) ... Removing libmunge2:amd64 (0.5.16-1) ... Removing libnl-route-3-200:amd64 (3.11.0-2) ... Removing libnl-3-200:amd64 (3.11.0-2) ... Removing libpsm2-2 (11.2.185-2.1) ... Removing libnuma1:amd64 (2.0.19-1) ... Removing libpciaccess0:amd64 (0.17-3+b3) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.4) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libquadmath0:amd64 (15.2.0-4) ... Removing libreadline8t64:amd64 (8.3-3) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsuitesparseconfig5:amd64 (1:5.12.0+dfsg-2) ... Removing libxnvctrl0:amd64 (535.171.04-1+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.2) ... Removing libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Removing libz3-4:amd64 (4.13.3-1) ... Removing libze1:amd64 (1.24.1-2) ... Removing ocl-icd-libopencl1:amd64 (2.3.3-1) ... Removing readline-common (8.3-3) ... Processing triggers for libc-bin (2.41-12) ... 0m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'remove', '--allow-remove-essential', 'apbs-data', 'fonts-mathjax', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libamdhip64-5:amd64', 'libapbs3t64:amd64', 'libarpack2t64:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libfetk1.9t64:amd64', 'libfuse3-4:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libllvm17t64:amd64', 'libmaloc1:amd64', 'libmetis5:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpmix2t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libspqr2:amd64', 'libspqr4:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libsuperlu5:amd64', 'libsuperlu7:amd64', 'libucx0:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'ocl-icd-libopencl1:amd64', 'readline-common', 'apbs'] 0m54.8s INFO: Running scripts post_remove 0m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_remove_exceptions'] 0m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_remove_exceptions'] 0m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg', '--purge', 'apbs-data', 'fonts-mathjax', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libamdhip64-5:amd64', 'libapbs3t64:amd64', 'libarpack2t64:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libfetk1.9t64:amd64', 'libfuse3-4:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libllvm17t64:amd64', 'libmaloc1:amd64', 'libmetis5:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpmix2t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libspqr2:amd64', 'libspqr4:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libsuperlu5:amd64', 'libsuperlu7:amd64', 'libucx0:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'ocl-icd-libopencl1:amd64', 'readline-common'] 0m54.9s DUMP: dpkg: warning: ignoring request to remove apbs-data which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed (Reading database ... 5424 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (56.1-1+b1) ... dpkg: warning: ignoring request to remove libamd-comgr2 which isn't installed dpkg: warning: ignoring request to remove libamd2 which isn't installed dpkg: warning: ignoring request to remove libamd3 which isn't installed dpkg: warning: ignoring request to remove libamdhip64-5 which isn't installed dpkg: warning: ignoring request to remove libapbs3t64 which isn't installed dpkg: warning: ignoring request to remove libarpack2t64 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libcamd2 which isn't installed dpkg: warning: ignoring request to remove libcamd3 which isn't installed dpkg: warning: ignoring request to remove libccolamd2 which isn't installed dpkg: warning: ignoring request to remove libccolamd3 which isn't installed dpkg: warning: ignoring request to remove libcholmod3 which isn't installed dpkg: warning: ignoring request to remove libcholmod5 which isn't installed dpkg: warning: ignoring request to remove libcolamd2 which isn't installed dpkg: warning: ignoring request to remove libcolamd3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfetk1.9t64 which isn't installed dpkg: warning: ignoring request to remove libfuse3-4 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libhsa-runtime64-1 which isn't installed dpkg: warning: ignoring request to remove libhsakmt1 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibmad5 which isn't installed dpkg: warning: ignoring request to remove libibumad3 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libllvm17t64 which isn't installed dpkg: warning: ignoring request to remove libmaloc1 which isn't installed dpkg: warning: ignoring request to remove libmetis5 which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.11.0-2) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi40 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpmix2t64 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.4) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1t64 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.3-3) ... dpkg: warning: ignoring request to remove libspqr2 which isn't installed dpkg: warning: ignoring request to remove libspqr4 which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig5 which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which isn't installed dpkg: warning: ignoring request to remove libsuperlu5 which isn't installed dpkg: warning: ignoring request to remove libsuperlu7 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libumfpack5 which isn't installed dpkg: warning: ignoring request to remove libumfpack6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxml2-16 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove libze1 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for readline-common (8.3-3) ... 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg', '--purge', 'apbs-data', 'fonts-mathjax', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libamdhip64-5:amd64', 'libapbs3t64:amd64', 'libarpack2t64:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libfetk1.9t64:amd64', 'libfuse3-4:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libllvm17t64:amd64', 'libmaloc1:amd64', 'libmetis5:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpmix2t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libspqr2:amd64', 'libspqr4:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libsuperlu5:amd64', 'libsuperlu7:amd64', 'libucx0:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'ocl-icd-libopencl1:amd64', 'readline-common'] 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg', '--purge', 'apbs'] 0m54.9s DUMP: dpkg: warning: ignoring request to remove apbs which isn't installed 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg', '--purge', 'apbs'] 0m54.9s INFO: Running scripts post_purge 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_purge_exceptions'] 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_purge_exceptions'] 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg', '--purge', '--pending'] 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg', '--purge', '--pending'] 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg', '--remove', '--pending'] 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg', '--remove', '--pending'] 0m55.0s INFO: Running scripts post_test 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_test_exceptions'] 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'tmp/scripts/post_test_exceptions'] 0m55.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m55.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg-divert', '--list'] 0m55.4s DUMP: diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra 0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'dpkg-divert', '--list'] 0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'clean'] 0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprn5daac2', 'apt-get', 'clean'] 0m55.4s DEBUG: Recording chroot state 0m56.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/shm'] 0m56.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/shm'] 0m56.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/console'] 0m56.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/console'] 0m56.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/ptmx'] 0m56.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/ptmx'] 0m56.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/pts'] 0m56.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/dev/pts'] 0m56.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/proc'] 0m56.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprn5daac2/proc'] 0m56.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m56.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmprn5daac2'] 0m56.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmprn5daac2 0m56.6s INFO: PASS: Upgrading between Debian distributions. 0m56.6s INFO: PASS: All tests. 0m56.6s INFO: piuparts run ends. ret=0 End: 2025-09-24 23:42:28 GMT