Start: 2025-09-18 07:44:15 GMT [oldstable] Package: augur Version: 20.0.0-1 Installed-Size: 829 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any (>= 3.11~), python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description: pipeline components for real-time virus analysis Homepage: https://github.com/nextstrain/augur Description-md5: e2aaa44840d7b632d0e95700bc100196 Section: science Priority: optional Filename: pool/main/a/augur/augur_20.0.0-1_all.deb Size: 187288 MD5sum: e3fe15acc709cc259fd3c65e7ae307be SHA256: af76cecb21ea71f78e4fbce03feac9056af9cfde8b4f9d20aeaf229fe38d000f [stable] Package: augur Version: 24.4.0-1 Installed-Size: 1056 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-importlib-resources | python3-supported-min (>= 3.11), python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any, python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description: pipeline components for real-time virus analysis Homepage: https://github.com/nextstrain/augur Description-md5: e2aaa44840d7b632d0e95700bc100196 Section: science Priority: optional Filename: pool/main/a/augur/augur_24.4.0-1_all.deb Size: 261232 MD5sum: b572f222840d0090638ca16dde37b5e6 SHA256: 54cf77ceaea54e677ac39643f62ead613bbd628037ce9c203f3d64cfe727f5f0 [testing] Package: augur Version: 24.4.0-3 Installed-Size: 1058 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-importlib-resources | python3-supported-min (>= 3.11), python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any, python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description: pipeline components for real-time virus analysis Homepage: https://github.com/nextstrain/augur Description-md5: e2aaa44840d7b632d0e95700bc100196 Section: science Priority: optional Filename: pool/main/a/augur/augur_24.4.0-3_all.deb Size: 261712 MD5sum: 5f0e121db7f92a14fd48ff94d6dc1ffc SHA256: 85a8d958ce86d25eb11d388c5d4b52df7a7b233ef0731e4b71484331bed813d4 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -B /srv/piuparts.debian.org/slave/refchroot/oldstable22testing/reference-chroot-metadata.dat --apt augur=24.4.0-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -B /srv/piuparts.debian.org/slave/refchroot/oldstable22testing/reference-chroot-metadata.dat --apt augur=24.4.0-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-39-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.148-1 (2025-08-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpe0aabqwm 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpe0aabqwm 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpe0aabqwm/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'update'] 0m0.8s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'update'] 0m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-yf', 'dist-upgrade'] 0m1.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-yf', 'dist-upgrade'] 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.1s DUMP: 7ec3a68e34ef928e31b3b606406d4b66 - 0m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.1s INFO: Running scripts post_setup 0m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_zz_backports'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_setup_zz_backports'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.7s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u12 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b9 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u2 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14+deb12u1 install ok installed gpgv gpgv 2.2.40-1.1+deb12u1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2+deb12u1 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u13 install ok installed libc6:amd64 libc6 2.36-9+deb12u13 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4+deb12u2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14+deb12u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u3 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u3 install ok installed libss2:amd64 libss2 1.47.0-2+b2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14+deb12u1 install ok installed libsystemd0:amd64 libsystemd0 252.39-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.39-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+deb12u1 install ok installed logsave logsave 1.47.0-2+b2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u3 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u3 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2025b-0+deb12u2 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u3 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u3 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/oldstable22testing/reference-chroot-metadata.dat 0m1.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 0m1.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 0m1.9s INFO: Running scripts is_testable 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s INFO: Running scripts pre_test 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_test_root_password'] 0m1.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_test_root_password'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'show', '--no-all-versions', 'augur'] 0m2.0s DUMP: Package: augur Version: 20.0.0-1 Installed-Size: 829 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any (>= 3.11~), python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description-en: pipeline components for real-time virus analysis The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution. . nextstrain is comprised of three components: . * fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences Description-md5: e2aaa44840d7b632d0e95700bc100196 Homepage: https://github.com/nextstrain/augur Section: science Priority: optional Filename: pool/main/a/augur/augur_20.0.0-1_all.deb Size: 187288 MD5sum: e3fe15acc709cc259fd3c65e7ae307be SHA256: af76cecb21ea71f78e4fbce03feac9056af9cfde8b4f9d20aeaf229fe38d000f 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'show', '--no-all-versions', 'augur'] 0m2.0s INFO: apt-cache knows about the following packages: augur 0m2.0s INFO: Running scripts pre_install 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_database-server'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_database-server'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_exceptions'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_exceptions'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_extras'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_extras'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy'] 0m2.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.12,o=Debian,a=oldstable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy', 'augur'] 0m2.1s DUMP: augur: Installed: (none) Candidate: 20.0.0-1 Version table: 20.0.0-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy', 'augur'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-y', 'install', 'augur'] 0m59.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 fasttree fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 ipython3 libamd2 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcamd2 libcc1-0 libccolamd2 libcholmod3 libcolamd2 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libdsdp-5.8gf libexpat1 libexpat1-dev libfftw3-double3 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglpk40 libgomp1 libgprofng0 libgraphite2-3 libgsl27 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libltdl7 libmetis5 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libperl5.36 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libstdc++-12-dev libsuitesparseconfig5 libtcl8.6 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libumfpack5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mafft mailcap media-types mime-support openssl perl perl-modules-5.36 pigz python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-asttokens python3-attr python3-backcall python3-bcbio-gff python3-beniget python3-biopython python3-boto3 python3-botocore python3-brotli python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-dev python3-distutils python3-executing python3-fonttools python3-fs python3-gast python3-idna python3-ipdb python3-ipython python3-isodate python3-jedi python3-jmespath python3-jsonschema python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pyfaidx python3-pyfastx python3-pygments python3-pygtrie python3-pyparsing python3-pyrsistent python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-stack-data python3-sympy python3-tk python3-toml python3-traitlets python3-treetime python3-tz python3-ufolib2 python3-urllib3 python3-wcwidth python3-xopen python3-zstandard python3.11 python3.11-dev python3.11-minimal raxml readline-common rpcsvc-proto seqmagick sgml-base tk8.6-blt2.5 unicode-data vcftools w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Suggested packages: binutils-doc blt-demo cpp-doc gcc-12-locales cpp-12-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc libfftw3-bin libfftw3-dev gdbm-l10n low-memory-monitor libiodbc2-dev default-libmysqlclient-dev gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils sensible-utils libstdc++-12-doc tcl8.6 tk8.6 libxsimd-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 samtools t-coffee wise python-cvxopt-doc python-cycler-doc python-ipython-doc python-jsonschema-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran python3-pytest python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc python-ply-doc python-pygments-doc ttf-bitstream-vera python-pygtrie-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python-zstandard-doc python3.11-venv python3.11-doc binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: iqtree manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2 blast2 libwww-perl lynx ruby bzip2 file xz-utils netbase python-biopython-doc ncbi-blast+ python3-json-pointer python3-rfc3987 python3-uritemplate python3-webcolors python3-bs4 python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-yaml python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-tables python3-jinja2 python3-numba python3-olefile python3-patsy isympy-common tabix The following NEW packages will be installed: augur binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 fasttree fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 ipython3 libamd2 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcamd2 libcc1-0 libccolamd2 libcholmod3 libcolamd2 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libdsdp-5.8gf libexpat1 libexpat1-dev libfftw3-double3 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglpk40 libgomp1 libgprofng0 libgraphite2-3 libgsl27 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libltdl7 libmetis5 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libperl5.36 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libstdc++-12-dev libsuitesparseconfig5 libtcl8.6 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libumfpack5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mafft mailcap media-types mime-support openssl perl perl-modules-5.36 pigz python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-asttokens python3-attr python3-backcall python3-bcbio-gff python3-beniget python3-biopython python3-boto3 python3-botocore python3-brotli python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-dev python3-distutils python3-executing python3-fonttools python3-fs python3-gast python3-idna python3-ipdb python3-ipython python3-isodate python3-jedi python3-jmespath python3-jsonschema python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pyfaidx python3-pyfastx python3-pygments python3-pygtrie python3-pyparsing python3-pyrsistent python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-stack-data python3-sympy python3-tk python3-toml python3-traitlets python3-treetime python3-tz python3-ufolib2 python3-urllib3 python3-wcwidth python3-xopen python3-zstandard python3.11 python3.11-dev python3.11-minimal raxml readline-common rpcsvc-proto seqmagick sgml-base tk8.6-blt2.5 unicode-data vcftools w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 247 newly installed, 0 to remove and 0 not upgraded. Need to get 227 MB of archives. After this operation, 1157 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u3 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u3 [4196 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u3 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 pigz amd64 2.6-1 [64.0 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.17-1~deb12u2 [2027 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u6 [817 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1+deb12u2 [99.9 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u6 [2064 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u4 [33.2 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u4 [79.8 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:19 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u4 [334 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u4 [135 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2+deb12u2 [839 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u6 [1798 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u6 [573 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:30 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.17-1~deb12u2 [1430 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311+deb12u1 [155 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1+deb12u2 [297 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14+deb12u1 [145 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14+deb12u1 [793 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1+deb12u1 [4960 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u4 [398 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:49 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+deb12u1 [79.0 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+deb12u1 [38.5 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+deb12u1 [74.2 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14+deb12u1 [116 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2+deb12u2 [189 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u7 [1401 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u2 [316 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+deb12u1 [472 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1+deb12u1 [565 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 python3-bcbio-gff all 0.6.9-1 [33.5 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libsuitesparseconfig5 amd64 1:5.12.0+dfsg-2 [23.9 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libamd2 amd64 1:5.12.0+dfsg-2 [36.2 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libcamd2 amd64 1:5.12.0+dfsg-2 [37.8 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libccolamd2 amd64 1:5.12.0+dfsg-2 [39.7 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libcolamd2 amd64 1:5.12.0+dfsg-2 [32.9 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libmetis5 amd64 5.1.0.dfsg-7 [171 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libcholmod3 amd64 1:5.12.0+dfsg-2 [335 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libdsdp-5.8gf amd64 5.8-10 [182 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libfftw3-double3 amd64 3.3.10-1 [776 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-7~deb12u1 [393 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libglpk40 amd64 5.0-1 [400 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libgslcblas0 amd64 2.7.1+dfsg-5+deb12u1 [108 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libgsl27 amd64 2.7.1+dfsg-5+deb12u1 [941 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libumfpack5 amd64 1:5.12.0+dfsg-2 [245 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 python3-cvxopt amd64 1.3.0+dfsg-1+b1 [262 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-isodate all 0.6.1-1 [25.3 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-pyrsistent amd64 0.18.1-1+b3 [60.0 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-jsonschema all 4.10.3-1 [67.9 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 python3-pyfaidx all 0.7.1-2 [28.0 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 python3-pyfastx amd64 0.8.4-2 [52.0 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1.1 [683 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14+deb12u1 [9768 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:127 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14+deb12u1 [41.7 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14+deb12u1 [26.1 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14+deb12u1 [9376 B] Get:138 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14+deb12u1 [2193 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14+deb12u1 [969 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14+deb12u1 [2197 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14+deb12u1 [883 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14+deb12u1 [2437 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14+deb12u1 [19.3 MB] Get:144 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:145 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u13 [47.4 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.148-1 [2176 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u13 [1904 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14+deb12u1 [2047 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14+deb12u1 [10.7 MB] Get:154 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:155 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:160 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6+deb12u6 [1987 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1+deb12u2 [151 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6+deb12u6 [4742 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:165 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:166 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:169 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6+deb12u6 [615 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:175 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:177 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:178 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:182 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:188 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3+deb12u1 [9376 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u4 [687 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1+deb12u2 [231 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 python3-treetime all 0.9.4-1 [921 kB] Get:205 http://deb.debian.org/debian bookworm/main amd64 python3-xopen all 1.7.0-2 [16.9 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1+deb12u1 [114 kB] Get:208 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1+deb12u1 [41.0 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:212 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 python3-botocore all 1.29.27+repack-1 [5502 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 python3-s3transfer all 0.6.0-1 [53.0 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 python3-boto3 all 1.26.27+dfsg-1 [187 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 python3-dendropy all 4.5.2-1 [275 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 python3-schedule all 1.1.0-0.2 [12.9 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 python3-seaborn all 0.12.2-1 [215 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 python3-cffi-backend amd64 1.15.1-5+b1 [84.6 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 python3-zstandard amd64 0.20.0-3 [324 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 python3-pygtrie all 2.2-2 [16.8 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 seqmagick all 0.8.4-3 [42.6 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 python3-backcall all 0.2.0-4 [12.1 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 python3-jedi all 0.18.2-1 [689 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 python3-traitlets all 5.5.0-1 [92.4 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get:228 http://deb.debian.org/debian bookworm/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 python3-pexpect all 4.8.0-4 [52.9 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 python3-pickleshare all 0.7.5-5 [7600 B] Get:231 http://deb.debian.org/debian bookworm/main amd64 python3-wcwidth all 0.2.5+dfsg1-1.1 [21.4 kB] Get:232 http://deb.debian.org/debian bookworm/main amd64 python3-prompt-toolkit all 3.0.36-2 [276 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 python3-asttokens all 2.2.1-1 [19.8 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 python3-executing all 1.2.0-2 [22.6 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 python3-pure-eval all 0.2.2-1 [11.2 kB] Get:237 http://deb.debian.org/debian bookworm/main amd64 python3-stack-data all 0.6.2-3 [21.8 kB] Get:238 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1+deb12u2 [522 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 python3-ipython all 8.5.0-4 [517 kB] Get:240 http://deb.debian.org/debian bookworm/main amd64 ipython3 all 8.5.0-4 [22.7 kB] Get:241 http://deb.debian.org/debian bookworm/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get:242 http://deb.debian.org/debian bookworm/main amd64 python3-ipdb all 0.13.9-1 [17.1 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 mafft amd64 7.505-1 [1078 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 raxml amd64 8.2.12+dfsg-8+b2 [1481 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 fasttree amd64 2.1.11-2 [181 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 vcftools amd64 0.1.16-3+b1 [431 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 augur all 20.0.0-1 [187 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 227 MB in 5s (44.1 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6099 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.36_5.36.0-7+deb12u3_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Selecting previously unselected package python3-chardet. Preparing to unpack .../181-python3-chardet_5.1.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.1.0+dfsg-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../182-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-botocore. Preparing to unpack .../183-python3-botocore_1.29.27+repack-1_all.deb ... Unpacking python3-botocore (1.29.27+repack-1) ... Selecting previously unselected package python3-s3transfer. Preparing to unpack .../184-python3-s3transfer_0.6.0-1_all.deb ... Unpacking python3-s3transfer (0.6.0-1) ... Selecting previously unselected package python3-boto3. Preparing to unpack .../185-python3-boto3_1.26.27+dfsg-1_all.deb ... Unpacking python3-boto3 (1.26.27+dfsg-1) ... Selecting previously unselected package python3-dendropy. Preparing to unpack .../186-python3-dendropy_4.5.2-1_all.deb ... Unpacking python3-dendropy (4.5.2-1) ... Selecting previously unselected package python3-schedule. Preparing to unpack .../187-python3-schedule_1.1.0-0.2_all.deb ... Unpacking python3-schedule (1.1.0-0.2) ... Selecting previously unselected package python3-seaborn. Preparing to unpack .../188-python3-seaborn_0.12.2-1_all.deb ... Unpacking python3-seaborn (0.12.2-1) ... Selecting previously unselected package python3-cffi-backend:amd64. Preparing to unpack .../189-python3-cffi-backend_1.15.1-5+b1_amd64.deb ... Unpacking python3-cffi-backend:amd64 (1.15.1-5+b1) ... Selecting previously unselected package python3-zstandard. Preparing to unpack .../190-python3-zstandard_0.20.0-3_amd64.deb ... Unpacking python3-zstandard (0.20.0-3) ... Selecting previously unselected package python3-pygtrie. Preparing to unpack .../191-python3-pygtrie_2.2-2_all.deb ... Unpacking python3-pygtrie (2.2-2) ... Selecting previously unselected package seqmagick. 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Selecting previously unselected package python3-asttokens. Preparing to unpack .../204-python3-asttokens_2.2.1-1_all.deb ... Unpacking python3-asttokens (2.2.1-1) ... Selecting previously unselected package python3-executing. Preparing to unpack .../205-python3-executing_1.2.0-2_all.deb ... Unpacking python3-executing (1.2.0-2) ... Selecting previously unselected package python3-pure-eval. Preparing to unpack .../206-python3-pure-eval_0.2.2-1_all.deb ... Unpacking python3-pure-eval (0.2.2-1) ... Selecting previously unselected package python3-stack-data. Preparing to unpack .../207-python3-stack-data_0.6.2-3_all.deb ... Unpacking python3-stack-data (0.6.2-3) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../208-python3-setuptools_66.1.1-1+deb12u2_all.deb ... Unpacking python3-setuptools (66.1.1-1+deb12u2) ... Selecting previously unselected package python3-ipython. Preparing to unpack .../209-python3-ipython_8.5.0-4_all.deb ... Unpacking python3-ipython (8.5.0-4) ... Selecting previously unselected package ipython3. Preparing to unpack .../210-ipython3_8.5.0-4_all.deb ... Unpacking ipython3 (8.5.0-4) ... Selecting previously unselected package python3-toml. Preparing to unpack .../211-python3-toml_0.10.2-1_all.deb ... Unpacking python3-toml (0.10.2-1) ... Selecting previously unselected package python3-ipdb. Preparing to unpack .../212-python3-ipdb_0.13.9-1_all.deb ... Unpacking python3-ipdb (0.13.9-1) ... Selecting previously unselected package mafft. Preparing to unpack .../213-mafft_7.505-1_amd64.deb ... Unpacking mafft (7.505-1) ... Selecting previously unselected package raxml. Preparing to unpack .../214-raxml_8.2.12+dfsg-8+b2_amd64.deb ... Unpacking raxml (8.2.12+dfsg-8+b2) ... Selecting previously unselected package fasttree. Preparing to unpack .../215-fasttree_2.1.11-2_amd64.deb ... Unpacking fasttree (2.1.11-2) ... Selecting previously unselected package vcftools. Preparing to unpack .../216-vcftools_0.1.16-3+b1_amd64.deb ... Unpacking vcftools (0.1.16-3+b1) ... Selecting previously unselected package augur. Preparing to unpack .../217-augur_20.0.0-1_all.deb ... Unpacking augur (20.0.0-1) ... Setting up media-types (10.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libicu72:amd64 (72.1-3+deb12u1) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up libgslcblas0:amd64 (2.7.1+dfsg-5+deb12u1) ... Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u7) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.3+ds-1) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2+deb12u2) ... Setting up binutils-common:amd64 (2.40-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.14-1) ... Setting up linux-libc-dev:amd64 (6.1.148-1) ... Setting up libctf-nobfd0:amd64 (2.40-2) ... Setting up libgsl27:amd64 (2.7.1+dfsg-5+deb12u1) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up libmetis5:amd64 (5.1.0.dfsg-7) ... Setting up libgomp1:amd64 (12.2.0-14+deb12u1) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u4) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u3) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14+deb12u1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-14+deb12u1) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u4) ... Setting up libltdl7:amd64 (2.4.7-7~deb12u1) ... Setting up libfftw3-double3:amd64 (3.3.10-1) ... Setting up libgfortran5:amd64 (12.2.0-14+deb12u1) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up libubsan1:amd64 (12.2.0-14+deb12u1) ... Setting up pigz (2.6-1) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u2) ... Setting up libasan8:amd64 (12.2.0-14+deb12u1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+deb12u2) ... Setting up fasttree (2.1.11-2) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u4) ... Setting up libtsan2:amd64 (12.2.0-14+deb12u1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libisl23:amd64 (0.25-1.1) ... Setting up libc-dev-bin (2.36-9+deb12u13) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.17-1~deb12u2) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u4) ... Setting up libsuitesparseconfig5:amd64 (1:5.12.0+dfsg-2) ... Setting up libcc1-0:amd64 (12.2.0-14+deb12u1) ... Setting up liblsan0:amd64 (12.2.0-14+deb12u1) ... Setting up libitm1:amd64 (12.2.0-14+deb12u1) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up raxml (8.2.12+dfsg-8+b2) ... Setting up libctf0:amd64 (2.40-2) ... Setting up libamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-14+deb12u1) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libcolamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up ca-certificates (20230311+deb12u1) ... Updating certificates in /etc/ssl/certs... 142 added, 0 removed; done. Setting up libcamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libgprofng0:amd64 (2.40-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5+deb12u4) ... Setting up libdsdp-5.8gf (5.8-10) ... Setting up libglpk40:amd64 (5.0-1) ... Setting up libgcc-12-dev:amd64 (12.2.0-14+deb12u1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u4) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up libccolamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up cpp (4:12.2.0-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1+deb12u2) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up libcholmod3:amd64 (1:5.12.0+dfsg-2) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up binutils (2.40-2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up perl (5.36.0-7+deb12u3) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up libumfpack5:amd64 (1:5.12.0+dfsg-2) ... Setting up gcc-12 (12.2.0-14+deb12u1) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up mailcap (3.70+nmu1) ... Setting up vcftools (0.1.16-3+b1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up mime-support (3.66) ... Setting up mafft (7.505-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up gcc (4:12.2.0-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u13) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6+deb12u6) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3.11:amd64 (3.11.2-6+deb12u6) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14+deb12u1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-pygtrie (2.2-2) ... Setting up python3-packaging (23.0-1) ... Setting up libexpat1-dev:amd64 (2.5.0-1+deb12u2) ... Setting up python3-wcwidth (0.2.5+dfsg1-1.1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+deb12u1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1+deb12u1) ... Setting up python3-pickleshare (0.7.5-5) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-urllib3 (1.26.12-1+deb12u1) ... Setting up python3-reportlab (3.6.12-1+deb12u1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-pyrsistent:amd64 (0.18.1-1+b3) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-cffi-backend:amd64 (1.15.1-5+b1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up g++-12 (12.2.0-14+deb12u1) ... Setting up python3-pkg-resources (66.1.1-1+deb12u2) ... Setting up python3-prompt-toolkit (3.0.36-2) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-schedule (1.1.0-0.2) ... Setting up python3-pyfaidx (0.7.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-pure-eval (0.2.2-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up python3-renderpm:amd64 (3.6.12-1+deb12u1) ... Setting up python3-setuptools (66.1.1-1+deb12u2) ... Setting up python3-backcall (0.2.0-4) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-cvxopt (1.3.0+dfsg-1+b1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-asttokens (2.2.1-1) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-ply (3.11-5) ... Setting up python3-pyfastx (0.8.4-2) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up python3-networkx (2.8.8-1) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-xopen (1.7.0-2) ... Setting up python3-zstandard (0.20.0-3) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-jsonschema (4.10.3-1) ... Setting up python3-executing (1.2.0-2) ... Setting up libpython3.11-dev:amd64 (3.11.2-6+deb12u6) ... Setting up python3-pexpect (4.8.0-4) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1+deb12u1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-contourpy (1.0.7-1+b1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up python3-dendropy (4.5.2-1) ... Setting up python3-stack-data (0.6.2-3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-jedi (0.18.2-1) ... Setting up python3.11-dev (3.11.2-6+deb12u6) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-ipython (8.5.0-4) ... Setting up python3-botocore (1.29.27+repack-1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up ipython3 (8.5.0-4) ... Setting up python3-ipdb (0.13.9-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-s3transfer (0.6.0-1) ... Setting up python3-boto3 (1.26.27+dfsg-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-seaborn (0.12.2-1) ... Processing triggers for libc-bin (2.36-9+deb12u13) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Setting up python3-treetime (0.9.4-1) ... Setting up seqmagick (0.8.4-3) ... Setting up python3-bcbio-gff (0.6.9-1) ... Setting up augur (20.0.0-1) ... Processing triggers for ca-certificates (20230311+deb12u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-y', 'install', 'augur'] 0m59.7s INFO: Running scripts post_install 0m59.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_install_exceptions'] 0m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_install_exceptions'] 0m59.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 1m1.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 1m1.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpe0aabqwm to stable 1m1.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 1m1.2s INFO: Running scripts pre_distupgrade 1m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_exceptions'] 1m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_exceptions'] 1m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'update'] 1m2.9s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [140 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9669 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6484 kB] Fetched 16.3 MB in 1s (12.7 MB/s) Reading package lists... 1m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'update'] 1m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-yf', 'dist-upgrade'] 1m57.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libamd2 libboost-dev libboost1.83-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libmetis5 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsuitesparseconfig5 libtirpc-common libtirpc-dev libtirpc3t64 libumfpack5 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-backcall python3-beniget python3-gast python3-pickleshare python3-ply python3-pyrsistent python3-pythran python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libboost1.74-dev libdb5.3 libdsdp-5.8gf libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgsl27 libhogweed6 libnettle8 libpng16-16 libreadline8 libssl3 libtirpc3 python3-distutils python3-lib2to3 python3-renderpm python3-reportlab-accel The following NEW packages will be installed: cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu fonts-dejavu-mono g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libamd3 libapt-pkg7.0 libboost1.83-dev libcairo2 libcamd3 libccolamd3 libcholmod5 libcolamd3 libdb5.3t64 libdsdp-5.8t64 libext2fs2t64 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgsl28 libhogweed6t64 libhwasan0 liblastlog2-2 libnettle8t64 libperl5.40 libpixman-1-0 libpng16-16t64 libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsframe1 libsharpyuv0 libssl3t64 libstdc++-14-dev libsuitesparseconfig7 libtirpc3t64 libumfpack6 libunistring5 libxcb-render0 libxcb-shm0 libzopfli1 login.defs netbase openssl-provider-legacy perl-modules-5.40 python3-autocommand python3-cairo python3-freetype python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jsonschema-specifications python3-more-itertools python3-numpy-dev python3-platformdirs python3-pytz python3-referencing python3-rlpycairo python3-rpds-py python3-typeguard python3-typeshed python3-typing-extensions python3-zipp python3-zopfli python3.13 python3.13-dev python3.13-minimal python3.13-tk sqv xtl-dev The following packages will be upgraded: adduser apt augur base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu blt bsdutils ca-certificates coreutils cpp cpp-12 dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gcc-12-base gpgv grep gzip hostname init-system-helpers ipython3 libacl1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblas3 libblkid1 libboost-dev libbrotli1 libbsd0 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libdeflate0 libexpat1 libexpat1-dev libffi8 libfftw3-double3 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgcrypt20 libgfortran5 libglpk40 libgmp10 libgomp1 libgpg-error0 libgprofng0 libgraphite2-3 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libidn2-0 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libltdl7 liblz4-1 liblzma5 libmd0 libmetis5 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpython3-all-dev libpython3-dev libpython3-stdlib libqhull-r8.0 libquadmath0 libraqm0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libstdc++-12-dev libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libtiff6 libtinfo6 libtirpc-common libtirpc-dev libtk8.6 libtsan2 libubsan1 libudev1 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxxhash0 libzstd1 linux-libc-dev login logsave mailcap mawk media-types mount ncurses-base ncurses-bin openssl passwd perl perl-base pigz python-matplotlib-data python3 python3-all python3-all-dev python3-asttokens python3-attr python3-bcbio-gff python3-biopython python3-boto3 python3-botocore python3-brotli python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-dev python3-executing python3-fonttools python3-fs python3-gast python3-idna python3-ipdb python3-ipython python3-isodate python3-jedi python3-jsonschema python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pyfaidx python3-pyfastx python3-pygments python3-pygtrie python3-pyparsing python3-pyrsistent python3-pythran python3-reportlab python3-requests python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-stack-data python3-sympy python3-tk python3-traitlets python3-treetime python3-tz python3-ufolib2 python3-urllib3 python3-wcwidth python3-xopen python3-zstandard raxml readline-common sed seqmagick sgml-base sysvinit-utils tar tk8.6-blt2.5 tzdata unicode-data usr-is-merged util-linux util-linux-extra x11-common xfonts-utils xml-core zlib1g zlib1g-dev 281 upgraded, 80 newly installed, 18 to remove and 0 not upgraded. Need to get 342 MB of archives. After this operation, 533 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 base-files amd64 13.8+deb13u1 [73.2 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libnsl-dev amd64 1.3.0-3+b3 [67.5 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.41-12 [1991 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [191 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.41-12 [2846 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.41-12 [637 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.8-1~deb13u1 [453 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 libpam-modules-bin amd64 1.7.0-5 [49.1 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libpam-modules amd64 1.7.0-5 [179 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.5-2 [2160 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.5-2 [5291 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.5-2 [504 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.13.5-1 [1068 B] Get:39 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.13.5-1 [1068 B] Get:40 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get:41 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:47 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 python3-treetime all 0.11.4-1 [938 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get:54 http://deb.debian.org/debian trixie/main amd64 python3.13-tk amd64 3.13.5-2 [108 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get:57 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.10.1+dfsg1-4 [2737 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-4 [23.8 MB] Get:64 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.48-1 [282 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:73 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.15.3-1 [16.3 MB] Get:76 http://deb.debian.org/debian trixie/main amd64 python3-pyrsistent amd64 0.20.0-2+b1 [63.1 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.2-3 [4280 B] Get:84 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.2-3 [152 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 augur all 24.4.0-1 [261 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 python3-seaborn all 0.13.2-5 [215 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.4.0-1 [1297 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.57.0-1 [1438 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.10.1+dfsg-1 [32.3 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.10.1+dfsg-1 [49.2 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libcamd3 amd64 1:7.10.1+dfsg-1 [45.9 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libccolamd3 amd64 1:7.10.1+dfsg-1 [47.7 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.10.1+dfsg-1 [41.0 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libcholmod5 amd64 1:7.10.1+dfsg-1 [648 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libdsdp-5.8t64 amd64 5.8-10.1 [181 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libumfpack6 amd64 1:7.10.1+dfsg-1 [288 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 python3-cvxopt amd64 1.3.0+dfsg-1+b9 [265 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 python3-cffi-backend amd64 1.17.1-3 [93.4 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 python3-zstandard amd64 0.23.0-4 [351 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [304 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 dpkg amd64 1.22.21 [1538 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 libcap2 amd64 1:2.75-10+b1 [28.8 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libcap-ng0 amd64 0.8.5-4+b1 [17.6 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libaudit1 amd64 1:4.0.2-2+b2 [55.1 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.1-6 [267 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 perl-base amd64 5.40.1-6 [1666 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 debconf all 1.5.91 [121 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libpam0g amd64 1.7.0-5 [69.9 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.46-1~deb13u1 [299 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5+20250216-2 [348 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-4+deb13u1 [260 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.8.1-1 [309 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-7 [914 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.41-5 [37.6 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 debianutils amd64 5.23.2 [92.4 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.14-4 [34.1 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:151 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:157 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-2.1~deb13u1 [205 kB] Get:167 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.41-5 [171 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.41-5 [209 kB] Get:170 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.84.4-3~deb13u1 [1519 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:172 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:174 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:176 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 libopenblas-pthread-dev amd64 0.3.29+ds-3 [5063 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 libopenblas0-pthread amd64 0.3.29+ds-3 [6740 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 libopenblas0 amd64 0.3.29+ds-3 [42.7 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 libopenblas-dev amd64 0.3.29+ds-3 [57.0 kB] Get:186 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:192 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1+deb13u1 [698 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.2+deb13u1 [233 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Get:199 http://deb.debian.org/debian trixie/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 liblz4-1 amd64 1.10.0-4 [63.9 kB] Get:201 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.17.0-1 [16.5 kB] Get:206 http://deb.debian.org/debian trixie/main amd64 python3-bcbio-gff all 0.7.1-2 [33.7 kB] Get:207 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB] Get:209 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-4 [416 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 python3-isodate all 0.7.0-1 [19.4 kB] Get:212 http://deb.debian.org/debian trixie/main amd64 python3-rpds-py amd64 0.21.0-2+b1 [257 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 python3-referencing all 0.36.2-1 [23.7 kB] Get:214 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get:215 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get:216 http://deb.debian.org/debian trixie/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:217 http://deb.debian.org/debian trixie/main amd64 python3-pyfaidx all 0.8.1.3-2 [29.1 kB] Get:218 http://deb.debian.org/debian trixie/main amd64 python3-pyfastx amd64 2.2.0-1+b1 [58.1 kB] Get:219 http://deb.debian.org/debian trixie/main amd64 pigz amd64 2.8-1 [62.7 kB] Get:220 http://deb.debian.org/debian trixie/main amd64 python3-xopen all 1.7.0-3 [16.8 kB] Get:221 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.3.0-3 [115 kB] Get:222 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get:223 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20250419 [162 kB] Get:224 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:225 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.2-1 [128 kB] Get:226 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:227 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 python3-botocore all 1.37.9+repack-1 [7311 kB] Get:229 http://deb.debian.org/debian trixie/main amd64 python3-s3transfer all 0.11.4-1 [57.7 kB] Get:230 http://deb.debian.org/debian trixie/main amd64 python3-boto3 all 1.37.9-1 [339 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 python3-dendropy all 4.6.1-2 [277 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 python3-schedule all 1.2.2-1 [14.9 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 python3-pygtrie all 2.2-3 [17.1 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 seqmagick all 0.8.6-3 [40.1 kB] Get:235 http://deb.debian.org/debian trixie/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get:236 http://deb.debian.org/debian trixie/main amd64 python3-prompt-toolkit all 3.0.51-2 [278 kB] Get:237 http://deb.debian.org/debian trixie/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get:238 http://deb.debian.org/debian trixie/main amd64 ipython3 all 8.35.0-1 [39.0 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 python3-typeshed all 0.0~git20241223.ea91db2-1 [1530 kB] Get:240 http://deb.debian.org/debian trixie/main amd64 python3-parso all 0.8.4-1 [67.8 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get:242 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib-inline all 0.1.7-1 [9032 B] Get:243 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 python3-asttokens all 3.0.0-1 [20.1 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 python3-executing all 2.2.0-0.1 [24.5 kB] Get:246 http://deb.debian.org/debian trixie/main amd64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get:249 http://deb.debian.org/debian trixie/main amd64 python3-pexpect all 4.9-3 [55.6 kB] Get:250 http://deb.debian.org/debian trixie/main amd64 python3-ipython all 8.35.0-1 [576 kB] Get:251 http://deb.debian.org/debian trixie/main amd64 python3-ipdb all 0.13.13-3 [17.5 kB] Get:252 http://deb.debian.org/debian trixie/main amd64 raxml amd64 8.2.13+dfsg-2+b1 [1514 kB] Get:253 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.5.1-1 [307 kB] Get:254 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.5.1-1 [2437 kB] Get:255 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:256 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:257 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:258 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.12.43-1 [2654 kB] Get:259 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.37-2+b5 [1500 kB] Get:260 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.41-5 [110 kB] Get:261 http://deb.debian.org/debian trixie/main amd64 coreutils amd64 9.7-3 [3024 kB] Get:262 http://deb.debian.org/debian trixie/main amd64 dash amd64 0.5.12-12 [98.5 kB] Get:263 http://deb.debian.org/debian trixie/main amd64 diffutils amd64 1:3.10-4 [387 kB] Get:264 http://deb.debian.org/debian trixie/main amd64 findutils amd64 4.10.0-3 [700 kB] Get:265 http://deb.debian.org/debian trixie/main amd64 grep amd64 3.11-4 [431 kB] Get:266 http://deb.debian.org/debian trixie/main amd64 gzip amd64 1.13-1 [138 kB] Get:267 http://deb.debian.org/debian trixie/main amd64 hostname amd64 3.25 [11.0 kB] Get:268 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.4-2 [186 kB] Get:269 http://deb.debian.org/debian trixie/main amd64 libpam-runtime all 1.7.0-5 [249 kB] Get:270 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.41-5 [112 kB] Get:271 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5+20250216-2 [438 kB] Get:272 http://deb.debian.org/debian trixie/main amd64 sed amd64 4.9-2 [329 kB] Get:273 http://deb.debian.org/debian trixie/main amd64 liblastlog2-2 amd64 2.41-5 [28.5 kB] Get:274 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.41-5 [143 kB] Get:275 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.41-5 [1235 kB] Get:276 http://deb.debian.org/debian trixie/main amd64 util-linux-extra amd64 2.41-5 [300 kB] Get:277 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Get:278 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Get:279 http://deb.debian.org/debian trixie/main amd64 sqv amd64 1.3.0-3 [661 kB] Get:280 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.8-1~deb13u1 [152 kB] Get:281 http://deb.debian.org/debian trixie/main amd64 libapt-pkg7.0 amd64 3.0.3 [1113 kB] Get:282 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.280 [10.6 kB] Get:283 http://deb.debian.org/debian trixie/main amd64 base-passwd amd64 3.6.7 [53.7 kB] Get:284 http://deb.debian.org/debian trixie/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Get:285 http://deb.debian.org/debian trixie/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Get:286 http://deb.debian.org/debian trixie/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Get:287 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-2 [131 kB] Get:288 http://deb.debian.org/debian trixie/main amd64 libsemanage-common all 3.8.1-1 [7812 B] Get:289 http://deb.debian.org/debian trixie/main amd64 libsepol2 amd64 3.8.1-1 [296 kB] Get:290 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB] Get:291 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.4-2 [1229 kB] Get:292 http://deb.debian.org/debian trixie/main amd64 adduser all 3.152 [191 kB] Get:293 http://deb.debian.org/debian trixie/main amd64 debian-archive-keyring all 2025.1 [179 kB] Get:294 http://deb.debian.org/debian trixie/main amd64 libseccomp2 amd64 2.6.0-2 [51.7 kB] Get:295 http://deb.debian.org/debian trixie/main amd64 apt amd64 3.0.3 [1452 kB] Get:296 http://deb.debian.org/debian trixie/main amd64 init-system-helpers all 1.69~deb13u1 [39.4 kB] Get:297 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5+20250216-2 [273 kB] Get:298 http://deb.debian.org/debian trixie/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Get:299 http://deb.debian.org/debian trixie/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Get:300 http://deb.debian.org/debian trixie/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Get:301 http://deb.debian.org/debian trixie/main amd64 libisl23 amd64 0.27-1 [659 kB] Get:302 http://deb.debian.org/debian trixie/main amd64 libmpfr6 amd64 4.2.2-1 [729 kB] Get:303 http://deb.debian.org/debian trixie/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Get:304 http://deb.debian.org/debian trixie/main amd64 g++-12 amd64 12.4.0-5 [10.8 MB] Get:305 http://deb.debian.org/debian trixie/main amd64 gcc-12 amd64 12.4.0-5 [19.6 MB] Get:306 http://deb.debian.org/debian trixie/main amd64 cpp-12 amd64 12.4.0-5 [9887 kB] Get:307 http://deb.debian.org/debian trixie/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Get:308 http://deb.debian.org/debian trixie/main amd64 libstdc++-12-dev amd64 12.4.0-5 [2081 kB] Get:309 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:310 http://deb.debian.org/debian trixie/main amd64 libcc1-0 amd64 14.2.0-19 [42.8 kB] Get:311 http://deb.debian.org/debian trixie/main amd64 libgcc-12-dev amd64 12.4.0-5 [2434 kB] Get:312 http://deb.debian.org/debian trixie/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Get:313 http://deb.debian.org/debian trixie/main amd64 gcc-12-base amd64 12.4.0-5 [43.9 kB] Get:314 http://deb.debian.org/debian trixie/main amd64 libgprofng0 amd64 2.44-3 [808 kB] Get:315 http://deb.debian.org/debian trixie/main amd64 libctf0 amd64 2.44-3 [88.6 kB] Get:316 http://deb.debian.org/debian trixie/main amd64 libctf-nobfd0 amd64 2.44-3 [156 kB] Get:317 http://deb.debian.org/debian trixie/main amd64 libsframe1 amd64 2.44-3 [78.4 kB] Get:318 http://deb.debian.org/debian trixie/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3 [1014 kB] Get:319 http://deb.debian.org/debian trixie/main amd64 binutils-common amd64 2.44-3 [2509 kB] Get:320 http://deb.debian.org/debian trixie/main amd64 binutils amd64 2.44-3 [265 kB] Get:321 http://deb.debian.org/debian trixie/main amd64 libbinutils amd64 2.44-3 [534 kB] Get:322 http://deb.debian.org/debian trixie/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:323 http://deb.debian.org/debian trixie/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Get:324 http://deb.debian.org/debian trixie/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:325 http://deb.debian.org/debian trixie/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:326 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:327 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get:328 http://deb.debian.org/debian trixie/main amd64 logsave amd64 1.47.2-3+b3 [24.9 kB] Get:329 http://deb.debian.org/debian trixie/main amd64 libext2fs2t64 amd64 1.47.2-3+b3 [213 kB] Get:330 http://deb.debian.org/debian trixie/main amd64 e2fsprogs amd64 1.47.2-3+b3 [591 kB] Get:331 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.41-5 [162 kB] Get:332 http://deb.debian.org/debian trixie/main amd64 gpgv amd64 2.4.7-21+b3 [241 kB] Get:333 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:334 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:335 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:336 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:337 http://deb.debian.org/debian trixie/main amd64 usr-is-merged all 39+nmu2 [5936 B] Get:338 http://deb.debian.org/debian trixie/main amd64 mawk amd64 1.3.4.20250131-1 [141 kB] Get:339 http://deb.debian.org/debian trixie/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19 [11.0 MB] Get:340 http://deb.debian.org/debian trixie/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Get:341 http://deb.debian.org/debian trixie/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Get:342 http://deb.debian.org/debian trixie/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Get:343 http://deb.debian.org/debian trixie/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Get:344 http://deb.debian.org/debian trixie/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19 [21.4 MB] Get:345 http://deb.debian.org/debian trixie/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19 [12.1 MB] Get:346 http://deb.debian.org/debian trixie/main amd64 cpp-14 amd64 14.2.0-19 [1280 B] Get:347 http://deb.debian.org/debian trixie/main amd64 gcc-14 amd64 14.2.0-19 [540 kB] Get:348 http://deb.debian.org/debian trixie/main amd64 g++-14 amd64 14.2.0-19 [22.5 kB] Get:349 http://deb.debian.org/debian trixie/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Get:350 http://deb.debian.org/debian trixie/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:351 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get:352 http://deb.debian.org/debian trixie/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get:353 http://deb.debian.org/debian trixie/main amd64 libss2 amd64 1.47.2-3+b3 [29.7 kB] Get:354 http://deb.debian.org/debian trixie/main amd64 xtl-dev all 0.7.7-1 [90.3 kB] Get:355 http://deb.debian.org/debian trixie/main amd64 libxsimd-dev amd64 13.2.0-1 [133 kB] Get:356 http://deb.debian.org/debian trixie/main amd64 mailcap all 3.74 [32.8 kB] Get:357 http://deb.debian.org/debian trixie/main amd64 python3-gast all 0.6.0-1 [18.7 kB] Get:358 http://deb.debian.org/debian trixie/main amd64 python3-ply all 3.11-9 [62.9 kB] Get:359 http://deb.debian.org/debian trixie/main amd64 python3-pythran amd64 0.17.0+ds-1 [456 kB] Get:360 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:361 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 342 MB in 3s (113 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49478 files and directories currently installed.) Preparing to unpack .../base-files_13.8+deb13u1_amd64.deb ... Unpacking base-files (13.8+deb13u1) over (12.4+deb12u12) ... Setting up base-files (13.8+deb13u1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Updating /etc/profile to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49489 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3+b3_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-3+b3) over (1.3.0-2) ... Preparing to unpack .../1-libcrypt-dev_1%3a4.4.38-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.38-1) over (1:4.4.33-2) ... Preparing to unpack .../2-libc6-dev_2.41-12_amd64.deb ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49497 files and directories currently installed.) Removing libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:amd64. (Reading database ... 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Preparing to unpack .../1-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) over (1.20.1-2+deb12u4) ... Preparing to unpack .../2-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) over (1.20.1-2+deb12u4) ... Preparing to unpack .../3-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) over (1.20.1-2+deb12u4) ... Preparing to unpack .../4-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) over (1.20.1-2+deb12u4) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../5-libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Preparing to unpack .../6-libexpat1-dev_2.7.1-2_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.7.1-2) over (2.5.0-1+deb12u2) ... Preparing to unpack .../7-libc6_2.41-12_amd64.deb ... Unpacking libc6:amd64 (2.41-12) over (2.36-9+deb12u13) ... Setting up libc6:amd64 (2.41-12) ... 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Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) over (1:1.2.13.dfsg-1) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package python3.13-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49822 files and directories currently installed.) Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Preparing to unpack .../tar_1.35+dfsg-3.1_amd64.deb ... Unpacking tar (1.35+dfsg-3.1) over (1.34+dfsg-1.2+deb12u1) ... Setting up tar (1.35+dfsg-3.1) ... dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: openssl depends on libssl3 (>= 3.0.9). libpython3.11-minimal:amd64 depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49832 files and directories currently installed.) Removing libssl3:amd64 (3.0.17-1~deb12u2) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49820 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.1-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.1-1) ... Preparing to unpack .../libzstd1_1.5.7+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.7+dfsg-1) over (1.5.4+dfsg2-5) ... Setting up libzstd1:amd64 (1.5.7+dfsg-1) ... Selecting previously unselected package openssl-provider-legacy. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49838 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) over (3.11.2-1+b1) ... Selecting previously unselected package netbase. Preparing to unpack .../archives/netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Preparing to unpack .../libsystemd0_257.8-1~deb13u1_amd64.deb ... Unpacking libsystemd0:amd64 (257.8-1~deb13u1) over (252.39-1~deb12u1) ... Setting up libsystemd0:amd64 (257.8-1~deb13u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49844 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.7.0-5_amd64.deb ... Unpacking libpam-modules-bin (1.7.0-5) over (1.5.2-6+deb12u1) ... Setting up libpam-modules-bin (1.7.0-5) ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libdb5.3. libperl5.36:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49835 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49829 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49835 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.7.0-5_amd64.deb ... Unpacking libpam-modules:amd64 (1.7.0-5) over (1.5.2-6+deb12u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.7.0-5) ... Installing new version of config file /etc/security/access.conf ... Installing new version of config file /etc/security/namespace.init ... dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libreadline8 (>= 7.0~beta). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49784 files and directories currently installed.) Removing libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49771 files and directories currently installed.) Preparing to unpack .../00-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../01-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../02-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Preparing to unpack .../03-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) over (3.11.2-1+b1) ... Selecting previously unselected package libpython3.13:amd64. Preparing to unpack .../04-libpython3.13_3.13.5-2_amd64.deb ... Unpacking libpython3.13:amd64 (3.13.5-2) ... Selecting previously unselected package libpython3.13-dev:amd64. Preparing to unpack .../05-libpython3.13-dev_3.13.5-2_amd64.deb ... Unpacking libpython3.13-dev:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../06-python3.13-dev_3.13.5-2_amd64.deb ... Unpacking python3.13-dev (3.13.5-2) ... Preparing to unpack .../07-libjs-sphinxdoc_8.1.3-5_all.deb ... Unpacking libjs-sphinxdoc (8.1.3-5) over (5.3.0-4) ... Preparing to unpack .../08-python3-dev_3.13.5-1_amd64.deb ... Unpacking python3-dev (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../09-libpython3-dev_3.13.5-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../10-libpython3-all-dev_3.13.5-1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../11-python3-all-dev_3.13.5-1_amd64.deb ... Unpacking python3-all-dev (3.13.5-1) over (3.11.2-1+b1) ... Preparing to unpack .../12-python3-all_3.13.5-1_amd64.deb ... Unpacking python3-all (3.13.5-1) over (3.11.2-1+b1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../13-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../14-python3-more-itertools_10.7.0-1_all.deb ... Unpacking python3-more-itertools (10.7.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../15-python3-typing-extensions_4.13.2-1_all.deb ... Unpacking python3-typing-extensions (4.13.2-1) ... Selecting previously unselected package python3-typeguard. 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Preparing to unpack .../22-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../23-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50936 files and directories currently installed.) Removing python3-distutils (3.11.2-3) ... (Reading database ... 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Preparing to unpack .../2-python3.13-tk_3.13.5-2_amd64.deb ... Unpacking python3.13-tk (3.13.5-2) ... Preparing to unpack .../3-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) over (2.5.3+dfsg-4.1) ... Preparing to unpack .../4-blt_2.5.3+dfsg-8_amd64.deb ... Unpacking blt (2.5.3+dfsg-8) over (2.5.3+dfsg-4.1) ... Preparing to unpack .../5-python3-numpy_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1) over (1:1.24.2-1+deb12u1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../6-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Preparing to unpack .../7-python3-pandas-lib_2.2.3+dfsg-9_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-9) over (1.5.3+dfsg-2) ... Preparing to unpack .../8-python-matplotlib-data_3.10.1+dfsg1-4_all.deb ... Unpacking python-matplotlib-data (3.10.1+dfsg1-4) over (3.6.3-1) ... Selecting previously unselected package gcc-14-base:amd64. Preparing to unpack .../9-gcc-14-base_14.2.0-19_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-19) ... Setting up gcc-14-base:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50904 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-19_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Setting up libstdc++6:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50904 files and directories currently installed.) Preparing to unpack .../python3-matplotlib_3.10.1+dfsg1-4_amd64.deb ... Unpacking python3-matplotlib (3.10.1+dfsg1-4) over (3.6.3-1+b1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../libpixman-1-0_0.44.0-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.44.0-3) ... Preparing to unpack .../libfreetype6_2.13.3+dfsg-1_amd64.deb ... 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Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.41-5) over (2.38.1-5+deb12u3) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux-extra (2.41-5) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66612 files and directories currently installed.) Removing libnettle8:amd64 (3.8.1-2) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66703 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.152_all.deb ... Unpacking adduser (3.152) over (3.134) ... Setting up adduser (3.152) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66723 files and directories currently installed.) Preparing to unpack .../archives/apt_3.0.3_amd64.deb ... Unpacking apt (3.0.3) over (2.6.1) ... Setting up apt (3.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66715 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69~deb13u1_all.deb ... Unpacking init-system-helpers (1.69~deb13u1) over (1.65.2+deb12u1) ... Setting up init-system-helpers (1.69~deb13u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66715 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... Unpacking ncurses-base (6.5+20250216-2) over (6.4-4) ... Setting up ncurses-base (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66713 files and directories currently installed.) Preparing to unpack .../00-libitm1_14.2.0-19_amd64.deb ... Unpacking libitm1:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../01-libasan8_14.2.0-19_amd64.deb ... Unpacking libasan8:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... Preparing to unpack .../02-liblsan0_14.2.0-19_amd64.deb ... Unpacking liblsan0:amd64 (14.2.0-19) over (12.2.0-14+deb12u1) ... 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Selecting previously unselected package libsframe1:amd64. Preparing to unpack .../19-libsframe1_2.44-3_amd64.deb ... Unpacking libsframe1:amd64 (2.44-3) ... Preparing to unpack .../20-binutils-x86-64-linux-gnu_2.44-3_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.44-3) over (2.40-2) ... Preparing to unpack .../21-binutils-common_2.44-3_amd64.deb ... Unpacking binutils-common:amd64 (2.44-3) over (2.40-2) ... Removing obsolete conffile /etc/gprofng.rc ... Preparing to unpack .../22-binutils_2.44-3_amd64.deb ... Unpacking binutils (2.44-3) over (2.40-2) ... Preparing to unpack .../23-libbinutils_2.44-3_amd64.deb ... Unpacking libbinutils:amd64 (2.44-3) over (2.40-2) ... Preparing to unpack .../24-libjansson4_2.14-2+b3_amd64.deb ... Unpacking libjansson4:amd64 (2.14-2+b3) over (2.14-2) ... Selecting previously unselected package libhwasan0:amd64. Preparing to unpack .../25-libhwasan0_14.2.0-19_amd64.deb ... Unpacking libhwasan0:amd64 (14.2.0-19) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52294 files and directories currently installed.) Preparing to unpack .../libboost1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-4.2) ... Preparing to unpack .../logsave_1.47.2-3+b3_amd64.deb ... Unpacking logsave (1.47.2-3+b3) over (1.47.0-2+b2) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2+b2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69253 files and directories currently installed.) Removing libext2fs2:amd64 (1.47.0-2+b2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69245 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.2-3+b3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.2-3+b3) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up libext2fs2t64:amd64 (1.47.2-3+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69262 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.2-3+b3_amd64.deb ... Unpacking e2fsprogs (1.47.2-3+b3) over (1.47.0-2+b2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../mount_2.41-5_amd64.deb ... Unpacking mount (2.41-5) over (2.38.1-5+deb12u3) ... Preparing to unpack .../gpgv_2.4.7-21+b3_amd64.deb ... Unpacking gpgv (2.4.7-21+b3) over (2.2.40-1.1+deb12u1) ... Setting up gpgv (2.4.7-21+b3) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69262 files and directories currently installed.) Preparing to unpack .../libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Preparing to unpack .../libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) over (2.3.3-1+b1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libidn2-0:amd64 (2.3.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69268 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) over (0.24.1-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69268 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) over (4.19.0-2+deb12u1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69268 files and directories currently installed.) Preparing to unpack .../usr-is-merged_39+nmu2_all.deb ... Unpacking usr-is-merged (39+nmu2) over (37~deb12u1) ... Setting up usr-is-merged (39+nmu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69269 files and directories currently installed.) Preparing to unpack .../00-mawk_1.3.4.20250131-1_amd64.deb ... Unpacking mawk (1.3.4.20250131-1) over (1.3.4.20200120-3.1) ... Selecting previously unselected package cpp-14-x86-64-linux-gnu. Preparing to unpack .../01-cpp-14-x86-64-linux-gnu_14.2.0-19_amd64.deb ... Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19) ... Preparing to unpack .../02-g++_4%3a14.2.0-1_amd64.deb ... Unpacking g++ (4:14.2.0-1) over (4:12.2.0-3) ... Preparing to unpack .../03-gcc_4%3a14.2.0-1_amd64.deb ... Unpacking gcc (4:14.2.0-1) over (4:12.2.0-3) ... Preparing to unpack .../04-cpp_4%3a14.2.0-1_amd64.deb ... Unpacking cpp (4:14.2.0-1) over (4:12.2.0-3) ... Selecting previously unselected package cpp-x86-64-linux-gnu. Preparing to unpack .../05-cpp-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package gcc-14-x86-64-linux-gnu. Preparing to unpack .../06-gcc-14-x86-64-linux-gnu_14.2.0-19_amd64.deb ... Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19) ... Selecting previously unselected package g++-14-x86-64-linux-gnu. Preparing to unpack .../07-g++-14-x86-64-linux-gnu_14.2.0-19_amd64.deb ... Unpacking g++-14-x86-64-linux-gnu (14.2.0-19) ... Selecting previously unselected package cpp-14. Preparing to unpack .../08-cpp-14_14.2.0-19_amd64.deb ... Unpacking cpp-14 (14.2.0-19) ... Selecting previously unselected package gcc-14. Preparing to unpack .../09-gcc-14_14.2.0-19_amd64.deb ... Unpacking gcc-14 (14.2.0-19) ... Selecting previously unselected package g++-14. Preparing to unpack .../10-g++-14_14.2.0-19_amd64.deb ... Unpacking g++-14 (14.2.0-19) ... Selecting previously unselected package gcc-x86-64-linux-gnu. Preparing to unpack .../11-gcc-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package g++-x86-64-linux-gnu. Preparing to unpack .../12-g++-x86-64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking g++-x86-64-linux-gnu (4:14.2.0-1) ... Preparing to unpack .../13-liblbfgsb0_3.0+dfsg.4-1+b2_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) over (3.0+dfsg.4-1) ... Preparing to unpack .../14-libmetis5_5.1.0.dfsg-7+b2_amd64.deb ... Unpacking libmetis5:amd64 (5.1.0.dfsg-7+b2) over (5.1.0.dfsg-7) ... Preparing to unpack .../15-libss2_1.47.2-3+b3_amd64.deb ... Unpacking libss2:amd64 (1.47.2-3+b3) over (1.47.0-2+b2) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu': Directory not empty Selecting previously unselected package xtl-dev. Preparing to unpack .../16-xtl-dev_0.7.7-1_all.deb ... Unpacking xtl-dev (0.7.7-1) ... Preparing to unpack .../17-libxsimd-dev_13.2.0-1_amd64.deb ... Unpacking libxsimd-dev:amd64 (13.2.0-1) over (8.1.0-7) ... Preparing to unpack .../18-mailcap_3.74_all.deb ... Unpacking mailcap (3.74) over (3.70+nmu1) ... Preparing to unpack .../19-python3-gast_0.6.0-1_all.deb ... Unpacking python3-gast (0.6.0-1) over (0.5.2-2) ... Preparing to unpack .../20-python3-ply_3.11-9_all.deb ... Unpacking python3-ply (3.11-9) over (3.11-5) ... Preparing to unpack .../21-python3-pythran_0.17.0+ds-1_amd64.deb ... Unpacking python3-pythran (0.17.0+ds-1) over (0.11.0+ds-7) ... Preparing to unpack .../22-sgml-base_1.31+nmu1_all.deb ... Unpacking sgml-base (1.31+nmu1) over (1.31) ... Preparing to unpack .../23-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) over (0.18+nmu1) ... Setting up media-types (13.0.0) ... Installing new version of config file /etc/mime.types ... Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libgslcblas0:amd64 (2.8+dfsg-5) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libtirpc-common (1.3.6+ds-1) ... Setting up fonts-lyx (2.4.3-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up binutils-common:amd64 (2.44-3) ... Setting up x11-common (1:7.7+24) ... Installing new version of config file /etc/X11/Xsession.d/20x11-common_process-args ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.23-2) ... Setting up linux-libc-dev (6.12.43-1) ... Setting up libctf-nobfd0:amd64 (2.44-3) ... Setting up libqhull-r8.0:amd64 (2020.2-6+b2) ... Setting up libmetis5:amd64 (5.1.0.dfsg-7+b2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libsframe1:amd64 (2.44-3) ... Setting up libjansson4:amd64 (2.14-2+b3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up gcc-12-base:amd64 (12.4.0-5) ... Setting up tzdata (2025b-4+deb13u1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Sep 18 07:45:49 UTC 2025. Universal Time is now: Thu Sep 18 07:45:49 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up libblas3:amd64 (3.12.1-6) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libmpfr6:amd64 (4.2.2-1) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libquadmath0:amd64 (14.2.0-19) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.48-1) ... Setting up libmpc3:amd64 (1.3.1-1+b3) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Setting up libatomic1:amd64 (14.2.0-19) ... Setting up libss2:amd64 (1.47.2-3+b3) ... Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... Setting up fonts-dejavu-core (2.37-8) ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-dejavu-lgc-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-dejavu-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/57-dejavu-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/58-dejavu-lgc-sans-mono.conf ... Setting up xtl-dev (0.7.7-1) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libltdl7:amd64 (2.5.4-4) ... Setting up libfftw3-double3:amd64 (3.3.10-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up logsave (1.47.2-3+b3) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libubsan1:amd64 (14.2.0-19) ... Setting up mount (2.41-5) ... Setting up perl-modules-5.40 (5.40.1-6) ... Setting up libhwasan0:amd64 (14.2.0-19) ... Setting up pigz (2.8-1) ... Setting up libcrypt-dev:amd64 (1:4.4.38-1) ... Setting up libtiff6:amd64 (4.7.0-3) ... Setting up libasan8:amd64 (14.2.0-19) ... Setting up libsuitesparseconfig7:amd64 (1:7.10.1+dfsg-1) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1~deb13u1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up mawk (1.3.4.20250131-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libtsan2:amd64 (14.2.0-19) ... Setting up libbinutils:amd64 (2.44-3) ... Setting up libisl23:amd64 (0.27-1) ... Setting up libgsl28:amd64 (2.8+dfsg-5) ... Setting up libc-dev-bin (2.41-12) ... Setting up python-matplotlib-data (3.10.1+dfsg1-4) ... Installing new version of config file /etc/matplotlibrc ... Setting up openssl (3.5.1-1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1+deb13u1) ... Setting up libcc1-0:amd64 (14.2.0-19) ... Setting up liblsan0:amd64 (14.2.0-19) ... Setting up libitm1:amd64 (14.2.0-19) ... Setting up raxml (8.2.13+dfsg-2+b1) ... Setting up libctf0:amd64 (2.44-3) ... Setting up liblapack3:amd64 (3.12.1-6) ... Setting up cpp-12 (12.4.0-5) ... Setting up libopenblas0-pthread:amd64 (0.3.29+ds-3) ... Setting up libamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libcolamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up e2fsprogs (1.47.2-3+b3) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/mke2fs.conf ... Setting up libcamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt, it does not contain exactly one certificate or CRL 21 added, 13 removed; done. Setting up libxsimd-dev:amd64 (13.2.0-1) ... Setting up perl (5.40.1-6) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3~deb13u1) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.44-3) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libglpk40:amd64 (5.0-1+b2) ... Setting up libgcc-12-dev:amd64 (12.4.0-5) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-19) ... Setting up cpp-14 (14.2.0-19) ... Setting up libccolamd3:amd64 (1:7.10.1+dfsg-1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libopenblas0:amd64 (0.3.29+ds-3) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.2+deb13u1) ... Setting up libc6-dev:amd64 (2.41-12) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libdsdp-5.8t64 (5.8-10.1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libgcc-14-dev:amd64 (14.2.0-19) ... Setting up libstdc++-14-dev:amd64 (14.2.0-19) ... Setting up mailcap (3.74) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up binutils-x86-64-linux-gnu (2.44-3) ... Setting up libpython3.13:amd64 (3.13.5-2) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.29+ds-3) ... Setting up libcholmod5:amd64 (1:7.10.1+dfsg-1) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libboost1.83-dev:amd64 (1.83.0-4.2) ... Setting up libstdc++-12-dev:amd64 (12.4.0-5) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up python3.13 (3.13.5-2) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up python3 (3.13.5-1) ... Setting up binutils (2.44-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.5-2) ... Setting up python3-platformdirs (4.3.7-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up python3-fs (2.4.16-7) ... Setting up python3-six (1.17.0-1) ... Setting up python3-isodate (0.7.0-1) ... Setting up libopenblas-dev:amd64 (0.3.29+ds-3) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygtrie (2.2-3) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-xopen (1.7.0-3) ... Setting up python3-packaging (25.0-1) ... Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up gcc-12 (12.4.0-5) ... Setting up python3-typeshed (0.0~git20241223.ea91db2-1) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-rpds-py (0.21.0-2+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libumfpack6:amd64 (1:7.10.1+dfsg-1) ... Setting up python3-pyrsistent:amd64 (0.20.0-2+b1) ... Setting up python3-lxml:amd64 (5.4.0-1) ... Setting up cpp (4:14.2.0-1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-1+b1) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-dendropy (4.6.1-2) ... Setting up python3-cffi-backend:amd64 (1.17.1-3) ... Setting up python3-ptyprocess (0.7.0-6) ... Setting up g++-12 (12.4.0-5) ... Setting up python3-prompt-toolkit (3.0.51-2) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-schedule (1.2.2-1) ... Setting up python3-pyfaidx (0.8.1.3-2) ... Setting up python3-sympy (1.13.3-5) ... Setting up python3-attr (25.3.0-1) ... Setting up python3-pure-eval (0.2.3-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-scipy (1.15.3-1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-parso (0.8.4-1) ... Setting up python3-cvxopt (1.3.0+dfsg-1+b9) ... Setting up python3-lz4 (4.4.0+dfsg-2) ... Setting up python3-asttokens (3.0.0-1) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Setting up python3-ply (3.11-9) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-pyfastx (2.2.0-1+b1) ... Setting up python3-gast (0.6.0-1) ... Setting up python3-all (3.13.5-1) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up python3-pytz (2025.2-3) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-tz (2025.2-3) ... Setting up gcc-14 (14.2.0-19) ... Setting up python3-matplotlib-inline (0.1.7-1) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-zstandard (0.23.0-4) ... Setting up python3-pandas (2.2.3+dfsg-9) ... Setting up python3-pil.imagetk:amd64 (11.1.0-5+b1) ... Setting up python3-executing (2.2.0-0.1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pexpect (4.9-3) ... Setting up libpython3.13-dev:amd64 (3.13.5-2) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-reportlab (4.3.1-1) ... Setting up libnsl-dev:amd64 (1.3.0-3+b3) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up g++-14 (14.2.0-19) ... Setting up python3-biopython (1.85+dfsg-4) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-referencing (0.36.2-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up libpython3-dev:amd64 (3.13.5-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3.13-dev (3.13.5-2) ... Setting up seqmagick (0.8.6-3) ... Setting up python3-networkx (3.2.1-5) ... Setting up gcc (4:14.2.0-1) ... Setting up libpython3-all-dev:amd64 (3.13.5-1) ... Setting up python3-ipython (8.35.0-1) ... Setting up python3-botocore (1.37.9+repack-1) ... Setting up python3-dev (3.13.5-1) ... Setting up python3-bcbio-gff (0.7.1-2) ... Setting up g++ (4:14.2.0-1) ... Setting up ipython3 (8.35.0-1) ... Setting up python3-ipdb (0.13.13-3) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-all-dev (3.13.5-1) ... Setting up python3-s3transfer (0.11.4-1) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up python3-boto3 (1.37.9-1) ... Setting up python3-pythran (0.17.0+ds-1) ... Setting up python3-fonttools (4.57.0-1) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-4) ... Setting up python3-treetime (0.11.4-1) ... Setting up python3-seaborn (0.13.2-5) ... Setting up augur (24.4.0-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for sgml-base (1.31+nmu1) ... 1m57.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-yf', 'dist-upgrade'] 1m57.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m58.4s DUMP: cc6be03135582e5dd4c9ee869186ad39 - 1m58.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m58.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'show', '--no-all-versions', 'augur'] 1m58.5s DUMP: Package: augur Version: 24.4.0-1 Installed-Size: 1056 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-importlib-resources | python3-supported-min (>= 3.11), python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any, python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description-en: pipeline components for real-time virus analysis The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution. . nextstrain is comprised of three components: . * fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences Description-md5: e2aaa44840d7b632d0e95700bc100196 Homepage: https://github.com/nextstrain/augur Section: science Priority: optional Filename: pool/main/a/augur/augur_24.4.0-1_all.deb Size: 261232 MD5sum: b572f222840d0090638ca16dde37b5e6 SHA256: 54cf77ceaea54e677ac39643f62ead613bbd628037ce9c203f3d64cfe727f5f0 1m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'show', '--no-all-versions', 'augur'] 1m58.5s INFO: apt-cache knows about the following packages: augur 1m58.5s INFO: Running scripts pre_install 1m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_database-server'] 1m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_database-server'] 1m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_exceptions'] 1m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_exceptions'] 1m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_extras'] 1m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_extras'] 1m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture'] 1m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture'] 1m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy'] 1m58.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.1,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy'] 1m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy', 'augur'] 1m58.6s DUMP: augur: Installed: 24.4.0-1 Candidate: 24.4.0-1 Version table: *** 24.4.0-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 1m58.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy', 'augur'] 1m58.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-y', 'install', 'augur'] 1m58.8s DUMP: Reading package lists... Building dependency tree... Reading state information... augur is already the newest version (24.4.0-1). The following packages were automatically installed and are no longer required: libamd2 libboost-dev libboost1.83-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libmetis5 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsuitesparseconfig5 libtirpc-common libtirpc-dev libtirpc3t64 libumfpack5 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-backcall python3-beniget python3-gast python3-pickleshare python3-ply python3-pyrsistent python3-pythran python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-y', 'install', 'augur'] 1m58.8s INFO: Running scripts post_install 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_install_exceptions'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_install_exceptions'] 1m58.8s INFO: Running scripts post_distupgrade 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_exceptions'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_exceptions'] 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_zz_backports'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_zz_backports'] 1m58.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 2m0.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 2m0.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpe0aabqwm to testing 2m0.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 2m0.9s INFO: Running scripts pre_distupgrade 2m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_exceptions'] 2m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_exceptions'] 2m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'update'] 2m2.3s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [147 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9799 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6535 kB] Fetched 16.5 MB in 1s (17.8 MB/s) Reading package lists... 2m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'update'] 2m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-yf', 'dist-upgrade'] 2m35.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libamd2 libboost-dev libboost1.83-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libgssapi-krb5-2 libicu72 libjs-jquery libjs-jquery-ui libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libmetis5 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsframe1 libsuitesparseconfig5 libtirpc-common libtirpc-dev libtirpc3t64 libumfpack5 libxml2 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-backcall python3-beniget python3-cffi-backend python3-gast python3-pickleshare python3-ply python3-pyrsistent python3-pythran python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-15 cpp-15-x86-64-linux-gnu g++-15 g++-15-x86-64-linux-gnu gcc-15 gcc-15-base gcc-15-x86-64-linux-gnu libabsl20240722 libaom3 libavif16 libdav1d7 libgav1-1 libgcc-15-dev librav1e0.7 libsframe2 libstdc++-15-dev libsvtav1enc2 libxml2-16 libyuv0 The following packages will be upgraded: adduser apt augur base-files bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp cpp-12 cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu fontconfig-config fonts-lyx g++ g++-12 g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-12 gcc-12-base gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gpgv init-system-helpers ipython3 libamd3 libapt-pkg7.0 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblas3 libblkid1 libcamd3 libcc1-0 libccolamd3 libcholmod5 libcolamd3 libctf-nobfd0 libctf0 libdsdp-5.8t64 libffi8 libfontconfig1 libgcc-12-dev libgcc-14-dev libgcc-s1 libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgmp10 libgomp1 libgpg-error0 libgprofng0 libgraphite2-3 libgsl28 libgslcblas0 libharfbuzz0b libhwasan0 libidn2-0 libimagequant0 libitm1 libjs-sphinxdoc liblapack3 liblastlog2-2 liblsan0 libltdl7 liblzma5 libmount1 libmpc3 libmpfr6 libopenjp2-7 libpcre2-8-0 libpng16-16t64 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 libsmartcols1 libsqlite3-0 libssl3t64 libstdc++-12-dev libstdc++-14-dev libstdc++6 libsuitesparseconfig7 libsystemd0 libtcl8.6 libtiff6 libtk8.6 libtsan2 libubsan1 libudev1 libumfpack6 libuuid1 libxml2 libxslt1.1 libzstd1 linux-libc-dev login login.defs mafft mailcap mount openssl openssl-provider-legacy passwd python-matplotlib-data python3 python3-all python3-all-dev python3-asttokens python3-biopython python3-cffi-backend python3-charset-normalizer python3-contourpy python3-cycler python3-dev python3-executing python3-fonttools python3-freetype python3-fs python3-inflect python3-ipython python3-isodate python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-numpy-dev python3-pil python3-pil.imagetk python3-platformdirs python3-prompt-toolkit python3-pythran python3-reportlab python3-requests python3-scipy python3-sympy python3-typeguard python3-typeshed python3-typing-extensions python3-urllib3 python3-zipp python3-zstandard python3.13 python3.13-dev python3.13-minimal python3.13-tk readline-common tzdata unicode-data util-linux util-linux-extra vcftools x11-common 173 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. Need to get 494 MB of archives. After this operation, 1096 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-1 [1556 kB] Get:3 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.1-3 [117 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.1-1 [14.0 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.1-1 [61.6 kB] Get:6 http://deb.debian.org/debian forky/main amd64 util-linux-extra amd64 2.41.1-3 [337 kB] Get:7 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.1-3 [29.3 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.1-3 [38.9 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.1-3 [188 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.1-3 [229 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.1-3 [157 kB] Get:12 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.1-3 [1306 kB] Get:13 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.1-3 [172 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:15 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:17 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.1-1.1 [316 kB] Get:18 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.2-1 [307 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-1.1 [320 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.2-1 [2438 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 258~rc4-1 [465 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 258~rc4-1 [156 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.5 [1182 kB] Get:25 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:26 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:27 http://deb.debian.org/debian forky/main amd64 adduser all 3.153 [191 kB] Get:28 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.5 [1479 kB] Get:29 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:30 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.1-3 [119 kB] Get:31 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get:34 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:35 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:37 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:39 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get:41 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get:42 http://deb.debian.org/debian forky/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get:43 http://deb.debian.org/debian forky/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get:44 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get:45 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get:46 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get:47 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get:48 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get:49 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get:50 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get:51 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get:52 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get:53 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get:54 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get:55 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:58 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get:59 http://deb.debian.org/debian forky/main amd64 python3-pil.imagetk amd64 11.3.0-1 [81.1 kB] Get:60 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get:62 http://deb.debian.org/debian forky/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:63 http://deb.debian.org/debian forky/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get:64 http://deb.debian.org/debian forky/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get:65 http://deb.debian.org/debian forky/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:66 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get:67 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get:68 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get:69 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get:70 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 15.2.0-4 [9508 B] Get:71 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get:72 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-3 [75.1 kB] Get:73 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 11.4.5-1 [505 kB] Get:74 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get:75 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get:76 http://deb.debian.org/debian forky/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get:77 http://deb.debian.org/debian forky/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get:78 http://deb.debian.org/debian forky/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get:79 http://deb.debian.org/debian forky/main amd64 python3-biopython amd64 1.85+dfsg-5 [1674 kB] Get:80 http://deb.debian.org/debian forky/main amd64 python3-isodate all 0.7.2-1 [19.5 kB] Get:81 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get:82 http://deb.debian.org/debian forky/main amd64 fonts-lyx all 2.4.4-1 [190 kB] Get:83 http://deb.debian.org/debian forky/main amd64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get:84 http://deb.debian.org/debian forky/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get:85 http://deb.debian.org/debian forky/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get:86 http://deb.debian.org/debian forky/main amd64 python3-fs all 2.4.16-8 [95.2 kB] Get:87 http://deb.debian.org/debian forky/main amd64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get:88 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get:89 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get:90 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get:91 http://deb.debian.org/debian forky/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get:92 http://deb.debian.org/debian forky/main amd64 python3-lxml amd64 6.0.1-1 [1434 kB] Get:93 http://deb.debian.org/debian forky/main amd64 python3-lz4 amd64 4.4.4+dfsg-1 [25.4 kB] Get:94 http://deb.debian.org/debian forky/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get:95 http://deb.debian.org/debian forky/main amd64 unicode-data all 16.0.0-1 [9197 kB] Get:96 http://deb.debian.org/debian forky/main amd64 python3-fonttools amd64 4.57.0-2 [1457 kB] Get:97 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get:98 http://deb.debian.org/debian forky/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-5 [23.8 MB] Get:99 http://deb.debian.org/debian forky/main amd64 python3-zstandard amd64 0.24.0-1 [351 kB] Get:100 http://deb.debian.org/debian forky/main amd64 mafft amd64 7.525-1 [1186 kB] Get:101 http://deb.debian.org/debian forky/main amd64 vcftools amd64 0.1.17-1 [468 kB] Get:102 http://deb.debian.org/debian forky/main amd64 augur all 24.4.0-3 [262 kB] Get:103 http://deb.debian.org/debian forky/main amd64 libgprofng0 amd64 2.45-7 [869 kB] Get:104 http://deb.debian.org/debian forky/main amd64 libctf0 amd64 2.45-7 [100 kB] Get:105 http://deb.debian.org/debian forky/main amd64 libctf-nobfd0 amd64 2.45-7 [167 kB] Get:106 http://deb.debian.org/debian forky/main amd64 binutils-x86-64-linux-gnu amd64 2.45-7 [1097 kB] Get:107 http://deb.debian.org/debian forky/main amd64 binutils amd64 2.45-7 [269 kB] Get:108 http://deb.debian.org/debian forky/main amd64 libbinutils amd64 2.45-7 [580 kB] Get:109 http://deb.debian.org/debian forky/main amd64 binutils-common amd64 2.45-7 [2558 kB] Get:110 http://deb.debian.org/debian forky/main amd64 libsframe2 amd64 2.45-7 [81.0 kB] Get:111 http://deb.debian.org/debian forky/main amd64 libmpfr6 amd64 4.2.2-2 [742 kB] Get:112 http://deb.debian.org/debian forky/main amd64 libmpc3 amd64 1.3.1-2 [55.8 kB] Get:113 http://deb.debian.org/debian forky/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-4 [76.3 MB] Get:114 http://deb.debian.org/debian forky/main amd64 libcc1-0 amd64 15.2.0-4 [42.7 kB] Get:115 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 15.2.0-4 [140 kB] Get:116 http://deb.debian.org/debian forky/main amd64 libitm1 amd64 15.2.0-4 [26.5 kB] Get:117 http://deb.debian.org/debian forky/main amd64 libasan8 amd64 15.2.0-4 [2778 kB] Get:118 http://deb.debian.org/debian forky/main amd64 liblsan0 amd64 15.2.0-4 [1249 kB] Get:119 http://deb.debian.org/debian forky/main amd64 g++-14 amd64 14.3.0-8 [28.2 kB] Get:120 http://deb.debian.org/debian forky/main amd64 gcc-14 amd64 14.3.0-8 [555 kB] Get:121 http://deb.debian.org/debian forky/main amd64 cpp-14 amd64 14.3.0-8 [1276 B] Get:122 http://deb.debian.org/debian forky/main amd64 g++-14-x86-64-linux-gnu amd64 14.3.0-8 [12.1 MB] Get:123 http://deb.debian.org/debian forky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.3.0-8 [21.4 MB] Get:124 http://deb.debian.org/debian forky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.3.0-8 [11.1 MB] Get:125 http://deb.debian.org/debian forky/main amd64 libubsan1 amd64 15.2.0-4 [1108 kB] Get:126 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.3.0-8 [2673 kB] Get:127 http://deb.debian.org/debian forky/main amd64 libquadmath0 amd64 15.2.0-4 [145 kB] Get:128 http://deb.debian.org/debian forky/main amd64 libhwasan0 amd64 15.2.0-4 [1538 kB] Get:129 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.3.0-8 [2670 kB] Get:130 http://deb.debian.org/debian forky/main amd64 g++-12 amd64 12.5.0-6 [10.8 MB] Get:131 http://deb.debian.org/debian forky/main amd64 gcc-12 amd64 12.5.0-6 [19.6 MB] Get:132 http://deb.debian.org/debian forky/main amd64 libstdc++-12-dev amd64 12.5.0-6 [2355 kB] Get:133 http://deb.debian.org/debian forky/main amd64 libgcc-12-dev amd64 12.5.0-6 [2433 kB] Get:134 http://deb.debian.org/debian forky/main amd64 libtsan2 amd64 15.2.0-4 [2491 kB] Get:135 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get:136 http://deb.debian.org/debian forky/main amd64 cpp-12 amd64 12.5.0-6 [9887 kB] Get:137 http://deb.debian.org/debian forky/main amd64 gcc-12-base amd64 12.5.0-6 [45.1 kB] Get:138 http://deb.debian.org/debian forky/main amd64 libgcc-15-dev amd64 15.2.0-4 [2719 kB] Get:139 http://deb.debian.org/debian forky/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-4 [85.6 MB] Get:140 http://deb.debian.org/debian forky/main amd64 cpp-15 amd64 15.2.0-4 [1272 B] Get:141 http://deb.debian.org/debian forky/main amd64 gcc-15 amd64 15.2.0-4 [522 kB] Get:142 http://deb.debian.org/debian forky/main amd64 g++ amd64 4:15.2.0-4 [1344 B] Get:143 http://deb.debian.org/debian forky/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4 [1196 B] Get:144 http://deb.debian.org/debian forky/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4 [1436 B] Get:145 http://deb.debian.org/debian forky/main amd64 gcc amd64 4:15.2.0-4 [5160 B] Get:146 http://deb.debian.org/debian forky/main amd64 cpp amd64 4:15.2.0-4 [1564 B] Get:147 http://deb.debian.org/debian forky/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4 [5292 B] Get:148 http://deb.debian.org/debian forky/main amd64 libstdc++-15-dev amd64 15.2.0-4 [2421 kB] Get:149 http://deb.debian.org/debian forky/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-4 [81.5 MB] Get:150 http://deb.debian.org/debian forky/main amd64 g++-15 amd64 15.2.0-4 [23.4 kB] Get:151 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get:152 http://deb.debian.org/debian forky/main amd64 gpgv amd64 2.4.8-3 [241 kB] Get:153 http://deb.debian.org/debian forky/main amd64 python3-prompt-toolkit all 3.0.52-1 [280 kB] Get:154 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get:155 http://deb.debian.org/debian forky/main amd64 ipython3 all 8.35.0-2 [39.1 kB] Get:156 http://deb.debian.org/debian forky/main amd64 python3-ipython all 8.35.0-2 [576 kB] Get:157 http://deb.debian.org/debian forky/main amd64 libsuitesparseconfig7 amd64 1:7.11.0+dfsg-2 [33.4 kB] Get:158 http://deb.debian.org/debian forky/main amd64 libamd3 amd64 1:7.11.0+dfsg-2 [51.0 kB] Get:159 http://deb.debian.org/debian forky/main amd64 libcamd3 amd64 1:7.11.0+dfsg-2 [47.8 kB] Get:160 http://deb.debian.org/debian forky/main amd64 libccolamd3 amd64 1:7.11.0+dfsg-2 [49.7 kB] Get:161 http://deb.debian.org/debian forky/main amd64 libcolamd3 amd64 1:7.11.0+dfsg-2 [42.4 kB] Get:162 http://deb.debian.org/debian forky/main amd64 libcholmod5 amd64 1:7.11.0+dfsg-2 [703 kB] Get:163 http://deb.debian.org/debian forky/main amd64 libdsdp-5.8t64 amd64 5.8-11 [183 kB] Get:164 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get:165 http://deb.debian.org/debian forky/main amd64 libgdbm6t64 amd64 1.26-1 [78.5 kB] Get:166 http://deb.debian.org/debian forky/main amd64 libgdbm-compat4t64 amd64 1.26-1 [52.8 kB] Get:167 http://deb.debian.org/debian forky/main amd64 libltdl7 amd64 2.5.4-5 [416 kB] Get:168 http://deb.debian.org/debian forky/main amd64 libglpk40 amd64 5.0-2 [398 kB] Get:169 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get:170 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get:171 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get:172 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:173 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get:174 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get:175 http://deb.debian.org/debian forky/main amd64 libumfpack6 amd64 1:7.11.0+dfsg-2 [309 kB] Get:176 http://deb.debian.org/debian forky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.2 [698 kB] Get:177 http://deb.debian.org/debian forky/main amd64 linux-libc-dev all 6.16.7-1 [2536 kB] Get:178 http://deb.debian.org/debian forky/main amd64 mailcap all 3.75 [33.5 kB] Get:179 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get:180 http://deb.debian.org/debian forky/main amd64 python3-asttokens all 3.0.0-2 [20.2 kB] Get:181 http://deb.debian.org/debian forky/main amd64 python3-cffi-backend amd64 2.0.0-1 [102 kB] Get:182 http://deb.debian.org/debian forky/main amd64 python3-executing all 2.2.0-0.3 [24.6 kB] Get:183 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get:184 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get:185 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get:186 http://deb.debian.org/debian forky/main amd64 python3-pythran amd64 0.17.0+ds-2 [457 kB] Get:187 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get:188 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get:189 http://deb.debian.org/debian forky/main amd64 python3-typeshed all 0.0~git20241223.ea91db2-4 [1531 kB] Get:190 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get:191 http://deb.debian.org/debian forky/main amd64 python3.13-tk amd64 3.13.7-1 [108 kB] Get:192 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+25 [217 kB] Preconfiguring packages ... Fetched 494 MB in 3s (149 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69488 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8+deb13u1) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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Setting up python3-pythran (0.17.0+ds-2) ... Setting up augur (24.4.0-3) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Processing triggers for debianutils (5.23.2) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up python3.13-tk (3.13.7-1) ... Processing triggers for libc-bin (2.41-12) ... 2m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-yf', 'dist-upgrade'] 2m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m36.4s DUMP: d135347dcb90b98cd15e34ce5efbfe38 - 2m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'show', '--no-all-versions', 'augur'] 2m36.5s DUMP: Package: augur Version: 24.4.0-3 Installed-Size: 1058 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-importlib-resources | python3-supported-min (>= 3.11), python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any, python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description-en: pipeline components for real-time virus analysis The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution. . nextstrain is comprised of three components: . * fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences Description-md5: e2aaa44840d7b632d0e95700bc100196 Homepage: https://github.com/nextstrain/augur Section: science Priority: optional Filename: pool/main/a/augur/augur_24.4.0-3_all.deb Size: 261712 MD5sum: 5f0e121db7f92a14fd48ff94d6dc1ffc SHA256: 85a8d958ce86d25eb11d388c5d4b52df7a7b233ef0731e4b71484331bed813d4 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'show', '--no-all-versions', 'augur'] 2m36.5s INFO: apt-cache knows about the following packages: augur 2m36.5s INFO: Running scripts pre_install 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_database-server'] 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_database-server'] 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_exceptions'] 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_exceptions'] 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_extras'] 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_extras'] 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture'] 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture'] 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy'] 2m36.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy'] 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy', 'augur'] 2m36.6s DUMP: augur: Installed: 24.4.0-3 Candidate: 24.4.0-3 Version table: *** 24.4.0-3 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 2m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy', 'augur'] 2m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-y', 'install', 'augur'] 2m36.8s DUMP: Reading package lists... Building dependency tree... Reading state information... augur is already the newest version (24.4.0-3). The following packages were automatically installed and are no longer required: libamd2 libboost-dev libboost1.83-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libgssapi-krb5-2 libicu72 libjs-jquery libjs-jquery-ui libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libmetis5 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsframe1 libsuitesparseconfig5 libtirpc-common libtirpc-dev libtirpc3t64 libumfpack5 libxml2 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-backcall python3-beniget python3-cffi-backend python3-gast python3-pickleshare python3-ply python3-pyrsistent python3-pythran python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-y', 'install', 'augur'] 2m36.8s INFO: Running scripts post_install 2m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_install_exceptions'] 2m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_install_exceptions'] 2m36.8s INFO: Running scripts post_distupgrade 2m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_exceptions'] 2m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_exceptions'] 2m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_zz_backports'] 2m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_distupgrade_zz_backports'] 2m36.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 2m39.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 2m39.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 2m41.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 2m41.1s INFO: Running scripts pre_install 2m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_database-server'] 2m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_database-server'] 2m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_exceptions'] 2m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_exceptions'] 2m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_extras'] 2m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_extras'] 2m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture'] 2m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture'] 2m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy'] 2m41.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy'] 2m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy', 'augur'] 2m41.2s DUMP: augur: Installed: 24.4.0-3 Candidate: 24.4.0-3 Version table: *** 24.4.0-3 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 2m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-cache', 'policy', 'augur'] 2m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-y', 'install', 'augur=24.4.0-3'] 2m41.4s DUMP: Reading package lists... Building dependency tree... Reading state information... augur is already the newest version (24.4.0-3). The following packages were automatically installed and are no longer required: libamd2 libboost-dev libboost1.83-dev libcamd2 libccolamd2 libcholmod3 libcolamd2 libgssapi-krb5-2 libicu72 libjs-jquery libjs-jquery-ui libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblbfgsb0 libmetis5 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libperl5.36 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libsframe1 libsuitesparseconfig5 libtirpc-common libtirpc-dev libtirpc3t64 libumfpack5 libxml2 libxsimd-dev perl-modules-5.36 python3-all-dev python3-appdirs python3-backcall python3-beniget python3-cffi-backend python3-gast python3-pickleshare python3-ply python3-pyrsistent python3-pythran python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', '-y', 'install', 'augur=24.4.0-3'] 2m41.4s INFO: Running scripts post_install 2m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_install_exceptions'] 2m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_install_exceptions'] 2m41.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 2m43.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 2m45.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', '-ac', '--ignore-obsolete'] 2m52.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', '-ac', '--ignore-obsolete'] 2m52.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m52.1s DUMP: 0.15.9~deb12u1 2m52.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m52.1s INFO: Running adequate version 0.15.9~deb12u1 now. 2m52.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'augur'] 2m52.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'augur'] 2m52.1s INFO: Running scripts pre_remove 2m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m59.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m59.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m59.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_exceptions'] 2m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/pre_remove_exceptions'] 2m59.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m59.9s DUMP: install ok installed adduser adduser 3.153 install ok installed apt apt 3.1.5 install ok installed augur augur 24.4.0-3 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed binutils binutils 2.45-7 install ok installed binutils-common:amd64 binutils-common 2.45-7 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.45-7 install ok installed blt blt 2.5.3+dfsg-8 install ok installed bsdutils bsdutils 1:2.41.1-3 install ok installed ca-certificates ca-certificates 20250419 install ok installed coreutils coreutils 9.7-3 install ok installed cpp cpp 4:15.2.0-4 install ok installed cpp-12 cpp-12 12.5.0-6 install ok installed cpp-14 cpp-14 14.3.0-8 install ok installed cpp-14-x86-64-linux-gnu cpp-14-x86-64-linux-gnu 14.3.0-8 install ok installed cpp-15 cpp-15 15.2.0-4 install ok installed cpp-15-x86-64-linux-gnu cpp-15-x86-64-linux-gnu 15.2.0-4 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:15.2.0-4 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed e2fsprogs e2fsprogs 1.47.2-3+b3 install ok installed fasttree fasttree 2.1.11-2 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-lyx fonts-lyx 2.4.4-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed g++ g++ 4:15.2.0-4 install ok installed g++-12 g++-12 12.5.0-6 install ok installed g++-14 g++-14 14.3.0-8 install ok installed g++-14-x86-64-linux-gnu g++-14-x86-64-linux-gnu 14.3.0-8 install ok installed g++-15 g++-15 15.2.0-4 install ok installed g++-15-x86-64-linux-gnu g++-15-x86-64-linux-gnu 15.2.0-4 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:15.2.0-4 install ok installed gcc gcc 4:15.2.0-4 install ok installed gcc-12 gcc-12 12.5.0-6 install ok installed gcc-12-base:amd64 gcc-12-base 12.5.0-6 install ok installed gcc-14 gcc-14 14.3.0-8 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-8 install ok installed gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu 14.3.0-8 install ok installed gcc-15 gcc-15 15.2.0-4 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed gcc-15-x86-64-linux-gnu gcc-15-x86-64-linux-gnu 15.2.0-4 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:15.2.0-4 install ok installed gpgv gpgv 2.4.8-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed ipython3 ipython3 8.35.0-2 install ok installed libabsl20240722:amd64 libabsl20240722 20240722.0-4 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libamd2:amd64 libamd2 1:5.12.0+dfsg-2 install ok installed libamd3:amd64 libamd3 1:7.11.0+dfsg-2 install ok installed libaom3:amd64 libaom3 3.12.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libasan8:amd64 libasan8 15.2.0-4 install ok installed libatomic1:amd64 libatomic1 15.2.0-4 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.1-1 install ok installed libavif16:amd64 libavif16 1.3.0-1 install ok installed libbinutils:amd64 libbinutils 2.45-7 install ok installed libblas3:amd64 libblas3 3.12.1-7 install ok installed libblkid1:amd64 libblkid1 2.41.1-3 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4.2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc-dev-bin libc-dev-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libc6-dev:amd64 libc6-dev 2.41-12 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcamd2:amd64 libcamd2 1:5.12.0+dfsg-2 install ok installed libcamd3:amd64 libcamd3 1:7.11.0+dfsg-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcc1-0:amd64 libcc1-0 15.2.0-4 install ok installed libccolamd2:amd64 libccolamd2 1:5.12.0+dfsg-2 install ok installed libccolamd3:amd64 libccolamd3 1:7.11.0+dfsg-2 install ok installed libcholmod3:amd64 libcholmod3 1:5.12.0+dfsg-2 install ok installed libcholmod5:amd64 libcholmod5 1:7.11.0+dfsg-2 install ok installed libcolamd2:amd64 libcolamd2 1:5.12.0+dfsg-2 install ok installed libcolamd3:amd64 libcolamd3 1:7.11.0+dfsg-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.45-7 install ok installed libctf0:amd64 libctf0 2.45-7 install ok installed libdav1d7:amd64 libdav1d7 1.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdeflate0:amd64 libdeflate0 1.23-2 install ok installed libdsdp-5.8t64 libdsdp-5.8t64 5.8-11 install ok installed libexpat1:amd64 libexpat1 2.7.1-2 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.7.1-2 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-3+b3 install ok installed libffi8:amd64 libffi8 3.5.2-2 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.10-2+b1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.4 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgav1-1:amd64 libgav1-1 0.19.0-3+b1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.5.0-6 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.3.0-8 install ok installed libgcc-15-dev:amd64 libgcc-15-dev 15.2.0-4 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.2-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-4 deinstall ok config-files libglib2.0-0:amd64 libglib2.0-0 2.74.6-2+deb12u7 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.4-3 install ok installed libglpk40:amd64 libglpk40 5.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u5 install ok installed libgomp1:amd64 libgomp1 15.2.0-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.55-2 install ok installed libgprofng0:amd64 libgprofng0 2.45-7 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-3 install ok installed libgsl28:amd64 libgsl28 2.8+dfsg-5.1 install ok installed libgslcblas0:amd64 libgslcblas0 2.8+dfsg-5.1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 11.4.5-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhwasan0:amd64 libhwasan0 15.2.0-4 install ok installed libicu72:amd64 libicu72 72.1-3+deb12u1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4 install ok installed libimagequant0:amd64 libimagequant0 4.4.0-3 install ok installed libisl23:amd64 libisl23 0.27-1 install ok installed libitm1:amd64 libitm1 15.2.0-4 install ok installed libjansson4:amd64 libjansson4 2.14-2+b3 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 8.2.3-6 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblapack3:amd64 liblapack3 3.12.1-7 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b2 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblsan0:amd64 liblsan0 15.2.0-4 install ok installed libltdl7:amd64 libltdl7 2.5.4-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmetis5:amd64 libmetis5 5.1.0.dfsg-7+b2 install ok installed libmount1:amd64 libmount1 2.41.1-3 install ok installed libmpc3:amd64 libmpc3 1.3.1-2 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-2 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3+b3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.29+ds-3 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.29+ds-3 install ok installed libopenblas0:amd64 libopenblas0 0.3.29+ds-3 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.29+ds-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.3-2.1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u3 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-6 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.50-1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.13.7-1 install ok installed libpython3-dev:amd64 libpython3-dev 3.13.7-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.7-1 install ok installed libpython3.11:amd64 libpython3.11 3.11.2-6+deb12u6 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.2-6+deb12u6 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u6 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u6 install ok installed libpython3.13:amd64 libpython3.13 3.13.7-1 install ok installed libpython3.13-dev:amd64 libpython3.13-dev 3.13.7-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.7-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.7-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-7 install ok installed libquadmath0:amd64 libquadmath0 15.2.0-4 install ok installed libraqm0:amd64 libraqm0 0.10.3-1 install ok installed librav1e0.7:amd64 librav1e0.7 0.7.1-9+b2 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsframe1:amd64 libsframe1 2.44-3 install ok installed libsframe2:amd64 libsframe2 2.45-7 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libss2:amd64 libss2 1.47.2-3+b3 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.5.0-6 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.3.0-8 install ok installed libstdc++-15-dev:amd64 libstdc++-15-dev 15.2.0-4 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsuitesparseconfig5:amd64 libsuitesparseconfig5 1:5.12.0+dfsg-2 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.11.0+dfsg-2 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 258~rc4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.17+dfsg-1 install ok installed libtiff6:amd64 libtiff6 4.7.0-5 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.6+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.17-1 install ok installed libtsan2:amd64 libtsan2 15.2.0-4 install ok installed libubsan1:amd64 libubsan1 15.2.0-4 install ok installed libudev1:amd64 libudev1 258~rc4-1 install ok installed libumfpack5:amd64 libumfpack5 1:5.12.0+dfsg-2 install ok installed libumfpack6:amd64 libumfpack6 1:7.11.0+dfsg-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41.1-3 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxft2:amd64 libxft2 2.3.6-1+b4 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-2.2 install ok installed libxml2-16:amd64 libxml2-16 2.14.5+dfsg-0.2 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxsimd-dev:amd64 libxsimd-dev 13.2.0-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.43-0.2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyuv0:amd64 libyuv0 0.0.1916.20250814-1 install ok installed libzopfli1 libzopfli1 1.0.3-3 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed linux-libc-dev linux-libc-dev 6.16.7-1 install ok installed login login 1:4.16.0-2+really2.41.1-3 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed logsave logsave 1.47.2-3+b3 install ok installed mafft mafft 7.525-1 install ok installed mailcap mailcap 3.75 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.41.1-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl openssl 3.5.2-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl perl 5.40.1-6 install ok installed perl-base perl-base 5.40.1-6 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u3 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-6 install ok installed pigz pigz 2.8-1 install ok installed python-matplotlib-data python-matplotlib-data 3.10.1+dfsg1-5 install ok installed python3 python3 3.13.7-1 install ok installed python3-all python3-all 3.13.7-1 install ok installed python3-all-dev python3-all-dev 3.13.7-1 install ok installed python3-appdirs python3-appdirs 1.4.4-3 install ok installed python3-asttokens python3-asttokens 3.0.0-2 install ok installed python3-attr python3-attr 25.3.0-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-backcall python3-backcall 0.2.0-4 install ok installed python3-bcbio-gff python3-bcbio-gff 0.7.1-2 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-biopython python3-biopython 1.85+dfsg-5 install ok installed python3-boto3 python3-boto3 1.37.9-1 install ok installed python3-botocore python3-botocore 1.37.9+repack-1 install ok installed python3-brotli python3-brotli 1.1.0-2+b7 install ok installed python3-cairo python3-cairo 1.27.0-2 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 2.0.0-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.3-1 install ok installed python3-contourpy python3-contourpy 1.3.1-2 install ok installed python3-cvxopt python3-cvxopt 1.3.0+dfsg-1+b9 install ok installed python3-cycler python3-cycler 0.12.1-2 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-decorator python3-decorator 5.2.1-2 install ok installed python3-dendropy python3-dendropy 4.6.1-2 install ok installed python3-dev python3-dev 3.13.7-1 install ok installed python3-executing python3-executing 2.2.0-0.3 install ok installed python3-fonttools python3-fonttools 4.57.0-2 install ok installed python3-freetype python3-freetype 2.5.1-2 install ok installed python3-fs python3-fs 2.4.16-8 install ok installed python3-gast python3-gast 0.6.0-1 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-inflect python3-inflect 7.5.0-1 install ok installed python3-ipdb python3-ipdb 0.13.13-3 install ok installed python3-ipython python3-ipython 8.35.0-2 install ok installed python3-isodate python3-isodate 0.7.2-1 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jaraco.text python3-jaraco.text 4.0.0-1 install ok installed python3-jedi python3-jedi 0.19.1+ds1-1 install ok installed python3-jmespath python3-jmespath 1.0.1-1 install ok installed python3-jsonschema python3-jsonschema 4.19.2-6 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-2 install ok installed python3-kiwisolver python3-kiwisolver 1.4.7-3+b1 install ok installed python3-lxml:amd64 python3-lxml 6.0.1-1 install ok installed python3-lz4 python3-lz4 4.4.4+dfsg-1 install ok installed python3-matplotlib python3-matplotlib 3.10.1+dfsg1-5 install ok installed python3-matplotlib-inline python3-matplotlib-inline 0.1.7-1 install ok installed python3-minimal python3-minimal 3.13.7-1 install ok installed python3-more-itertools python3-more-itertools 10.8.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numpy python3-numpy 1:2.2.4+ds-1.2 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.4+ds-1.2 install ok installed python3-packaging python3-packaging 25.0-1 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-9 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-9 install ok installed python3-parso python3-parso 0.8.4-1 install ok installed python3-pexpect python3-pexpect 4.9-3 install ok installed python3-pickleshare python3-pickleshare 0.7.5-5 install ok installed python3-pil:amd64 python3-pil 11.3.0-1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 11.3.0-1 install ok installed python3-pkg-resources python3-pkg-resources 78.1.1-0.1 install ok installed python3-platformdirs python3-platformdirs 4.4.0-1 install ok installed python3-ply python3-ply 3.11-9 install ok installed python3-prompt-toolkit python3-prompt-toolkit 3.0.52-1 install ok installed python3-ptyprocess python3-ptyprocess 0.7.0-6 install ok installed python3-pure-eval python3-pure-eval 0.2.3-1 install ok installed python3-pyfaidx python3-pyfaidx 0.8.1.3-2 install ok installed python3-pyfastx python3-pyfastx 2.2.0-1+b1 install ok installed python3-pygments python3-pygments 2.18.0+dfsg-2 install ok installed python3-pygtrie python3-pygtrie 2.2-3 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.20.0-2+b1 install ok installed python3-pythran python3-pythran 0.17.0+ds-2 install ok installed python3-pytz python3-pytz 2025.2-3 install ok installed python3-referencing python3-referencing 0.36.2-1 install ok installed python3-reportlab python3-reportlab 4.4.3-1 install ok installed python3-requests python3-requests 2.32.5+dfsg-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-rpds-py python3-rpds-py 0.21.0-2+b1 install ok installed python3-s3transfer python3-s3transfer 0.11.4-1 install ok installed python3-schedule python3-schedule 1.2.2-1 install ok installed python3-scipy python3-scipy 1.15.3-1.1 install ok installed python3-seaborn python3-seaborn 0.13.2-5 install ok installed python3-setuptools python3-setuptools 78.1.1-0.1 install ok installed python3-six python3-six 1.17.0-1 install ok installed python3-stack-data python3-stack-data 0.6.3-1 install ok installed python3-sympy python3-sympy 1.14.0-2 install ok installed python3-tk:amd64 python3-tk 3.13.5-1 install ok installed python3-toml python3-toml 0.10.2-1 install ok installed python3-traitlets python3-traitlets 5.14.3+really5.14.3-1 install ok installed python3-treetime python3-treetime 0.11.4-1 install ok installed python3-typeguard python3-typeguard 4.4.4-1 install ok installed python3-typeshed python3-typeshed 0.0~git20241223.ea91db2-4 install ok installed python3-typing-extensions python3-typing-extensions 4.15.0-1 install ok installed python3-tz python3-tz 2025.2-3 install ok installed python3-ufolib2 python3-ufolib2 0.17.1+dfsg1-1 install ok installed python3-urllib3 python3-urllib3 2.5.0-1 install ok installed python3-wcwidth python3-wcwidth 0.2.13+dfsg1-1 install ok installed python3-xopen python3-xopen 1.7.0-3 install ok installed python3-zipp python3-zipp 3.23.0-1 install ok installed python3-zopfli python3-zopfli 0.2.3.post1-1+b1 install ok installed python3-zstandard python3-zstandard 0.24.0-1 install ok installed python3.11 python3.11 3.11.2-6+deb12u6 install ok installed python3.11-dev python3.11-dev 3.11.2-6+deb12u6 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u6 install ok installed python3.13 python3.13 3.13.7-1 install ok installed python3.13-dev python3.13-dev 3.13.7-1 install ok installed python3.13-minimal python3.13-minimal 3.13.7-1 install ok installed python3.13-tk python3.13-tk 3.13.7-1 install ok installed raxml raxml 8.2.13+dfsg-2+b1 install ok installed readline-common readline-common 8.3-3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed seqmagick seqmagick 0.8.6-3 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-8 install ok installed tzdata tzdata 2025b-5 install ok installed unicode-data unicode-data 16.0.0-1 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41.1-3 install ok installed util-linux-extra util-linux-extra 2.41.1-3 install ok installed vcftools vcftools 0.1.17-1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+25 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed xtl-dev xtl-dev 0.7.7-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 2m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m59.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-15', 'cpp-15-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-15', 'g++-15-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-15', 'gcc-15-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'ipython3', 'libabsl20240722:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libcc1-0:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libdsdp-5.8t64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmetis5:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsframe1:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyuv0:amd64', 'libzopfli1', 'linux-libc-dev', 'mafft', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'pigz', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-autocommand', 'python3-backcall', 'python3-bcbio-gff', 'python3-beniget', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-dev', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-inflect', 'python3-ipdb', 'python3-ipython', 'python3-isodate', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-pytz', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zopfli', 'python3-zstandard', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'raxml', 'readline-common', 'rpcsvc-proto', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64', 'augur'] 3m26.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libglib2.0-0' is not installed, so not removed The following package was automatically installed and is no longer required: gcc-14-base Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: augur binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 cpp-14 cpp-14-x86-64-linux-gnu cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu fasttree fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-urw-base35 g++ g++-12 g++-14 g++-14-x86-64-linux-gnu g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-12 gcc-14 gcc-14-x86-64-linux-gnu gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu ipython3 libabsl20240722 libamd2 libamd3 libaom3 libasan8 libatomic1 libavif16 libbinutils libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcamd2 libcamd3 libcc1-0 libccolamd2 libccolamd3 libcholmod3 libcholmod5 libcolamd2 libcolamd3 libcrypt-dev libctf-nobfd0 libctf0 libdav1d7 libdeflate0 libdsdp-5.8t64 libexpat1 libexpat1-dev libfftw3-double3 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgcc-12-dev libgcc-14-dev libgcc-15-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgomp1 libgprofng0 libgraphite2-3 libgsl28 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libltdl7 libmetis5 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libperl5.36 libperl5.40 libpixman-1-0 libpng16-16t64 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.7 libreadline8t64 libsframe1 libsframe2 libsharpyuv0 libstdc++-12-dev libstdc++-14-dev libstdc++-15-dev libsuitesparseconfig5 libsuitesparseconfig7 libsvtav1enc2 libtcl8.6 libtiff6 libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libumfpack5 libumfpack6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-16 libxrender1 libxsimd-dev libxslt1.1 libxss1 libyuv0 libzopfli1 linux-libc-dev mafft mailcap media-types mime-support netbase openssl perl perl-modules-5.36 perl-modules-5.40 pigz python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-asttokens python3-attr python3-autocommand python3-backcall python3-bcbio-gff python3-beniget python3-biopython python3-boto3 python3-botocore python3-brotli python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-dev python3-executing python3-fonttools python3-freetype python3-fs python3-gast python3-idna python3-inflect python3-ipdb python3-ipython python3-isodate python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jedi python3-jmespath python3-jsonschema python3-jsonschema-specifications python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pil.imagetk python3-pkg-resources python3-platformdirs python3-ply python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pyfaidx python3-pyfastx python3-pygments python3-pygtrie python3-pyparsing python3-pyrsistent python3-pythran python3-pytz python3-referencing python3-reportlab python3-requests python3-rlpycairo python3-rpds-py python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-stack-data python3-sympy python3-tk python3-toml python3-traitlets python3-treetime python3-typeguard python3-typeshed python3-typing-extensions python3-tz python3-ufolib2 python3-urllib3 python3-wcwidth python3-xopen python3-zipp python3-zopfli python3-zstandard python3.11 python3.11-dev python3.11-minimal python3.13 python3.13-dev python3.13-minimal python3.13-tk raxml readline-common rpcsvc-proto seqmagick sgml-base tk8.6-blt2.5 unicode-data vcftools w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core xtl-dev zlib1g-dev 0 upgraded, 0 newly installed, 317 to remove and 0 not upgraded. After this operation, 2761 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71106 files and directories currently installed.) Removing augur (24.4.0-3) ... Removing python3-pythran (0.17.0+ds-2) ... Removing g++ (4:15.2.0-4) ... Removing gcc (4:15.2.0-4) ... Removing g++-14 (14.3.0-8) ... Removing gcc-14 (14.3.0-8) ... Removing g++-x86-64-linux-gnu (4:15.2.0-4) ... Removing gcc-x86-64-linux-gnu (4:15.2.0-4) ... Removing seqmagick (0.8.6-3) ... Removing python3-treetime (0.11.4-1) ... Removing python3-seaborn (0.13.2-5) ... Removing python3-matplotlib (3.10.1+dfsg1-5) ... Removing python3-pil.imagetk:amd64 (11.3.0-1) ... Removing python3-tk:amd64 (3.13.5-1) ... Removing blt (2.5.3+dfsg-8) ... Removing python3-boto3 (1.37.9-1) ... Removing python3-s3transfer (0.11.4-1) ... Removing python3-botocore (1.37.9+repack-1) ... Removing python3-requests (2.32.5+dfsg-1) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:15.2.0-4) ... Removing g++-12 (12.5.0-6) ... Removing gcc-12 (12.5.0-6) ... Removing cpp-12 (12.5.0-6) ... Removing cpp-14 (14.3.0-8) ... Removing g++-14-x86-64-linux-gnu (14.3.0-8) ... Removing gcc-14-x86-64-linux-gnu (14.3.0-8) ... Removing cpp-14-x86-64-linux-gnu (14.3.0-8) ... Removing cpp-x86-64-linux-gnu (4:15.2.0-4) ... Removing fasttree (2.1.11-2) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-8) ... Removing python3.13-tk (3.13.7-1) ... Removing libtk8.6:amd64 (8.6.17-1) ... Removing libxft2:amd64 (2.3.6-1+b4) ... Removing python-matplotlib-data (3.10.1+dfsg1-5) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-lyx (2.4.4-1) ... Removing g++-15 (15.2.0-4) ... Removing g++-15-x86-64-linux-gnu (15.2.0-4) ... Removing ipython3 (8.35.0-2) ... Removing libumfpack5:amd64 (1:5.12.0+dfsg-2) ... Removing libcholmod3:amd64 (1:5.12.0+dfsg-2) ... Removing libamd2:amd64 (1:5.12.0+dfsg-2) ... Removing python3-cvxopt (1.3.0+dfsg-1+b9) ... Removing libumfpack6:amd64 (1:7.11.0+dfsg-2) ... Removing libcholmod5:amd64 (1:7.11.0+dfsg-2) ... Removing libstdc++-15-dev:amd64 (15.2.0-4) ... Removing libboost-dev:amd64 (1.83.0.2+b2) ... Removing libboost1.83-dev:amd64 (1.83.0-4.2) ... Removing libstdc++-14-dev:amd64 (14.3.0-8) ... Removing libgcc-14-dev:amd64 (14.3.0-8) ... Removing libstdc++-12-dev:amd64 (12.5.0-6) ... Removing libgcc-12-dev:amd64 (12.5.0-6) ... Removing python3-pandas (2.2.3+dfsg-9) ... Removing python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Removing libblas3:amd64 (3.12.1-7) ... Removing python3.11-dev (3.11.2-6+deb12u6) ... Removing libpython3.11-dev:amd64 (3.11.2-6+deb12u6) ... Removing python3-all-dev (3.13.7-1) ... Removing libpython3-all-dev:amd64 (3.13.7-1) ... Removing libcamd2:amd64 (1:5.12.0+dfsg-2) ... Removing libcamd3:amd64 (1:7.11.0+dfsg-2) ... Removing libccolamd2:amd64 (1:5.12.0+dfsg-2) ... Removing libccolamd3:amd64 (1:7.11.0+dfsg-2) ... Removing libcolamd2:amd64 (1:5.12.0+dfsg-2) ... Removing libglpk40:amd64 (5.0-2) ... Removing libcolamd3:amd64 (1:7.11.0+dfsg-2) ... Removing libdsdp-5.8t64 (5.8-11) ... Removing python3.11 (3.11.2-6+deb12u6) ... Removing python3.11-minimal (3.11.2-6+deb12u6) ... Removing libpython3.11:amd64 (3.11.2-6+deb12u6) ... Removing libfftw3-double3:amd64 (3.3.10-2+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ... Removing python3-jsonschema (4.19.2-6) ... Removing python3-jsonschema-specifications (2023.12.1-2) ... Removing python3-referencing (0.36.2-1) ... Removing python3-rpds-py (0.21.0-2+b1) ... Removing python3-appdirs (1.4.4-3) ... Removing python3-ipdb (0.13.13-3) ... Removing mime-support (3.66) ... Removing mailcap (3.75) ... Removing vcftools (0.1.17-1) ... Removing mafft (7.525-1) ... Removing perl (5.40.1-6) ... Removing libperl5.40:amd64 (5.40.1-6) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u3) ... Removing libgdbm-compat4t64:amd64 (1.26-1) ... Removing libgdbm6t64:amd64 (1.26-1) ... Removing libopenblas-dev:amd64 (0.3.29+ds-3) ... Removing libopenblas-pthread-dev:amd64 (0.3.29+ds-3) ... Removing libopenblas0:amd64 (0.3.29+ds-3) ... Removing liblapack3:amd64 (3.12.1-7) ... Removing libgsl28:amd64 (2.8+dfsg-5.1) ... Removing libgslcblas0:amd64 (2.8+dfsg-5.1) ... Removing libnsl-dev:amd64 (1.3.0-3+b3) ... Removing libtirpc-dev:amd64 (1.3.6+ds-1) ... Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libtirpc3t64:amd64 (1.3.6+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libicu72:amd64 (72.1-3+deb12u1) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing python3-dev (3.13.7-1) ... Removing libjs-sphinxdoc (8.2.3-6) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-6) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libltdl7:amd64 (2.5.4-5) ... Removing libmetis5:amd64 (5.1.0.dfsg-7+b2) ... Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ... Removing python3.13-dev (3.13.7-1) ... Removing libqhull-r8.0:amd64 (2020.2-7) ... Removing libsframe1:amd64 (2.44-3) ... Removing libsuitesparseconfig5:amd64 (1:5.12.0+dfsg-2) ... Removing libtcl8.6:amd64 (8.6.17+dfsg-1) ... Removing libtirpc-common (1.3.6+ds-1) ... Removing libxss1:amd64 (1:1.2.3-1+b3) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.2) ... Removing libxsimd-dev:amd64 (13.2.0-1) ... Removing openssl (3.5.2-1) ... Removing perl-modules-5.36 (5.36.0-7+deb12u3) ... Removing perl-modules-5.40 (5.40.1-6) ... Removing python3-xopen (1.7.0-3) ... Removing pigz (2.8-1) ... Removing python3-ipython (8.35.0-2) ... Removing python3-stack-data (0.6.3-1) ... Removing python3-executing (2.2.0-0.3) ... Removing python3-asttokens (3.0.0-2) ... Removing python3-networkx (3.2.1-5) ... Removing python3-backcall (0.2.0-4) ... Removing python3-bcbio-gff (0.7.1-2) ... Removing python3-beniget (0.4.1-3) ... Removing python3-cffi-backend:amd64 (2.0.0-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-contourpy (1.3.1-2) ... Removing python3-cycler (0.12.1-2) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-dendropy (4.6.1-2) ... Removing python3-gast (0.6.0-1) ... Removing python3-idna (3.10-1) ... Removing python3-isodate (0.7.2-1) ... Removing python3-jedi (0.19.1+ds1-1) ... Removing python3-jmespath (1.0.1-1) ... Removing python3-kiwisolver (1.4.7-3+b1) ... Removing python3-matplotlib-inline (0.1.7-1) ... Removing python3-pyfastx (2.2.0-1+b1) ... Removing python3-pyfaidx (0.8.1.3-2) ... Removing python3-packaging (25.0-1) ... Removing python3-parso (0.8.4-1) ... Removing python3-pexpect (4.9-3) ... Removing python3-pickleshare (0.7.5-5) ... Removing python3-ply (3.11-9) ... Removing python3-prompt-toolkit (3.0.52-1) ... Removing python3-ptyprocess (0.7.0-6) ... Removing python3-pure-eval (0.2.3-1) ... Removing python3-pygments (2.18.0+dfsg-2) ... Removing python3-pygtrie (2.2-3) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-pyrsistent:amd64 (0.20.0-2+b1) ... Removing python3-tz (2025.2-3) ... Removing python3-pytz (2025.2-3) ... Removing python3-schedule (1.2.2-1) ... Removing python3-six (1.17.0-1) ... Removing python3-toml (0.10.2-1) ... Removing python3-traitlets (5.14.3+really5.14.3-1) ... Removing python3-typeshed (0.0~git20241223.ea91db2-4) ... Removing python3-urllib3 (2.5.0-1) ... Removing python3-wcwidth (0.2.13+dfsg1-1) ... Removing python3-zstandard (0.24.0-1) ... Removing raxml (8.2.13+dfsg-2+b1) ... Removing xtl-dev (0.7.7-1) ... Removing gcc-15 (15.2.0-4) ... Removing binutils (2.45-7) ... Removing libgprofng0:amd64 (2.45-7) ... Removing gcc-15-x86-64-linux-gnu (15.2.0-4) ... Removing binutils-x86-64-linux-gnu (2.45-7) ... Removing libctf0:amd64 (2.45-7) ... Removing libbinutils:amd64 (2.45-7) ... Removing binutils-common:amd64 (2.45-7) ... Removing python3-biopython (1.85+dfsg-5) ... Removing python3-reportlab (4.4.3-1) ... Removing python3-pil:amd64 (11.3.0-1) ... Removing cpp-15 (15.2.0-4) ... Removing cpp-15-x86-64-linux-gnu (15.2.0-4) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.27.0-2) ... Removing libcairo2:amd64 (1.18.4-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-2.4) ... Removing fontconfig-config (2.15.0-2.4) ... Removing fonts-urw-base35 (20200910-8) ... Removing libavif16:amd64 (1.3.0-1) ... Removing libgav1-1:amd64 (0.19.0-3+b1) ... Removing libabsl20240722:amd64 (20240722.0-4) ... Removing libamd3:amd64 (1:7.11.0+dfsg-2) ... Removing libaom3:amd64 (3.12.1-1) ... Removing libgcc-15-dev:amd64 (15.2.0-4) ... Removing libasan8:amd64 (15.2.0-4) ... Removing libraqm0:amd64 (0.10.3-1) ... Removing libharfbuzz0b:amd64 (11.4.5-1) ... Removing libglib2.0-0t64:amd64 (2.84.4-3) ... Removing libatomic1:amd64 (15.2.0-4) ... Removing xfonts-utils (1:7.7+7) ... Removing python3-freetype (2.5.1-2) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libpython3-dev:amd64 (3.13.7-1) ... Removing libpython3.13-dev:amd64 (3.13.7-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libexpat1-dev:amd64 (2.7.1-2) ... Removing libc6-dev:amd64 (2.41-12) ... Removing libc-dev-bin (2.41-12) ... Removing libcc1-0:amd64 (15.2.0-4) ... Removing libcrypt-dev:amd64 (1:4.4.38-1) ... Removing libctf-nobfd0:amd64 (2.45-7) ... Removing libdav1d7:amd64 (1.5.1-1) ... Removing libtiff6:amd64 (4.7.0-5) ... Removing libdeflate0:amd64 (1.23-2) ... Removing libfontenc1:amd64 (1:1.1.8-1+b2) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing python3-setuptools (78.1.1-0.1) ... Removing libsuitesparseconfig7:amd64 (1:7.11.0+dfsg-2) ... Removing libgomp1:amd64 (15.2.0-4) ... Removing libgraphite2-3:amd64 (1.3.14-3) ... Removing libhwasan0:amd64 (15.2.0-4) ... Removing libimagequant0:amd64 (4.4.0-3) ... Removing libisl23:amd64 (0.27-1) ... Removing libitm1:amd64 (15.2.0-4) ... Removing libjansson4:amd64 (2.14-2+b3) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libyuv0:amd64 (0.0.1916.20250814-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing liblsan0:amd64 (15.2.0-4) ... Removing libmpc3:amd64 (1.3.1-2) ... Removing libmpfr6:amd64 (4.2.2-2) ... Removing libopenjp2-7:amd64 (2.5.3-2.1) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libpng16-16t64:amd64 (1.6.50-1) ... Removing libpython3.13:amd64 (3.13.7-1) ... Removing libquadmath0:amd64 (15.2.0-4) ... Removing librav1e0.7:amd64 (0.7.1-9+b2) ... Removing libsframe2:amd64 (2.45-7) ... Removing libwebpmux3:amd64 (1.5.0-0.1) ... Removing libwebpdemux2:amd64 (1.5.0-0.1) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libtsan2:amd64 (15.2.0-4) ... Removing libubsan1:amd64 (15.2.0-4) ... Removing libxrender1:amd64 (1:0.9.12-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing linux-libc-dev (6.16.7-1) ... Removing python3-pkg-resources (78.1.1-0.1) ... Removing python3-charset-normalizer (3.4.3-1) ... Removing python3-zipp (3.23.0-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31+nmu1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing python3-jaraco.text (4.0.0-1) ... Removing python3-jaraco.context (6.0.1-1) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-inflect (7.5.0-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.8.0-1) ... Removing python3-typeguard (4.4.4-1) ... Removing python3-typing-extensions (4.15.0-1) ... Removing python3-fonttools (4.57.0-2) ... Removing python3-scipy (1.15.3-1.1) ... Removing python3-numpy (1:2.2.4+ds-1.2) ... Removing libopenblas0-pthread:amd64 (0.3.29+ds-3) ... Removing libgfortran5:amd64 (15.2.0-4) ... Removing python3-lxml:amd64 (6.0.1-1) ... Removing libxslt1.1:amd64 (1.1.43-0.2) ... Removing libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Removing python3-zopfli (0.2.3.post1-1+b1) ... Removing libzopfli1 (1.0.3-3) ... Removing python3-all (3.13.7-1) ... Removing python3-brotli (1.1.0-2+b7) ... Removing python3-decorator (5.2.1-2) ... Removing python3-fs (2.4.16-8) ... Removing python3-lz4 (4.4.4+dfsg-1) ... Removing python3-sympy (1.14.0-2) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Removing python3-platformdirs (4.4.0-1) ... Removing unicode-data (16.0.0-1) ... Removing python3-ufolib2 (0.17.1+dfsg1-1) ... Removing python3-attr (25.3.0-1) ... Removing python3 (3.13.7-1) ... Removing python3.13 (3.13.7-1) ... Removing libpython3-stdlib:amd64 (3.13.7-1) ... Removing libpython3.13-stdlib:amd64 (3.13.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing python3-minimal (3.13.7-1) ... Removing python3.13-minimal (3.13.7-1) ... Removing libpython3.13-minimal:amd64 (3.13.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-3) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.3-3) ... Removing libexpat1:amd64 (2.7.1-2) ... Processing triggers for libc-bin (2.41-12) ... 3m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-15', 'cpp-15-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-15', 'g++-15-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-15', 'gcc-15-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'ipython3', 'libabsl20240722:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libcc1-0:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libdsdp-5.8t64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmetis5:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsframe1:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyuv0:amd64', 'libzopfli1', 'linux-libc-dev', 'mafft', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'pigz', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-autocommand', 'python3-backcall', 'python3-bcbio-gff', 'python3-beniget', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-dev', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-inflect', 'python3-ipdb', 'python3-ipython', 'python3-isodate', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-pytz', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zopfli', 'python3-zstandard', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'raxml', 'readline-common', 'rpcsvc-proto', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64', 'augur'] 3m26.0s INFO: Running scripts post_remove 3m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_remove_exceptions'] 3m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_remove_exceptions'] 3m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-15', 'cpp-15-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-15', 'g++-15-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-15', 'gcc-15-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'ipython3', 'libabsl20240722:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libcc1-0:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libdsdp-5.8t64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmetis5:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsframe1:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyuv0:amd64', 'libzopfli1', 'linux-libc-dev', 'mafft', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'pigz', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-autocommand', 'python3-backcall', 'python3-bcbio-gff', 'python3-beniget', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-dev', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-inflect', 'python3-ipdb', 'python3-ipython', 'python3-isodate', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-pytz', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zopfli', 'python3-zstandard', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'raxml', 'readline-common', 'rpcsvc-proto', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64'] 3m26.4s DUMP: (Reading database ... 5472 files and directories currently installed.) Purging configuration files for binutils (2.45-7) ... Purging configuration files for binutils-common:amd64 (2.45-7) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:15.2.0-4) ... dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove cpp-14 which isn't installed dpkg: warning: ignoring request to remove cpp-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-15 which isn't installed dpkg: warning: ignoring request to remove cpp-15-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove fasttree which isn't installed Purging configuration files for fontconfig-config (2.15.0-2.4) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove g++-14 which isn't installed dpkg: warning: ignoring request to remove g++-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-15 which isn't installed dpkg: warning: ignoring request to remove g++-15-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove gcc-14 which isn't installed dpkg: warning: ignoring request to remove gcc-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-15 which isn't installed dpkg: warning: ignoring request to remove gcc-15-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove ipython3 which isn't installed dpkg: warning: ignoring request to remove libabsl20240722 which isn't installed dpkg: warning: ignoring request to remove libamd2 which isn't installed dpkg: warning: ignoring request to remove libamd3 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libavif16 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcamd2 which isn't installed dpkg: warning: ignoring request to remove libcamd3 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libccolamd2 which isn't installed dpkg: warning: ignoring request to remove libccolamd3 which isn't installed dpkg: warning: ignoring request to remove libcholmod3 which isn't installed dpkg: warning: ignoring request to remove libcholmod5 which isn't installed dpkg: warning: ignoring request to remove libcolamd2 which isn't installed dpkg: warning: ignoring request to remove libcolamd3 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libdav1d7 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdsdp-5.8t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-15-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.84.4-3) ... dpkg: warning: ignoring request to remove libglpk40 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgsl28 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmetis5 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.13 which isn't installed dpkg: warning: ignoring request to remove libpython3.13-dev which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.7-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove librav1e0.7 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.3-3) ... dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsframe2 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-15-dev which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig5 which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libumfpack5 which isn't installed dpkg: warning: ignoring request to remove libumfpack6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxml2-16 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed dpkg: warning: ignoring request to remove libzopfli1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for mailcap (3.75) ... Purging configuration files for media-types (13.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for netbase (6.5) ... Purging configuration files for openssl (3.5.2-1) ... Purging configuration files for perl (5.40.1-6) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed dpkg: warning: ignoring request to remove pigz which isn't installed Purging configuration files for python-matplotlib-data (3.10.1+dfsg1-5) ... Purging configuration files for python3 (3.13.7-1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-asttokens which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-backcall which isn't installed dpkg: warning: ignoring request to remove python3-bcbio-gff which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-boto3 which isn't installed dpkg: warning: ignoring request to remove python3-botocore which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cvxopt which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dendropy which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-executing which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-ipdb which isn't installed dpkg: warning: ignoring request to remove python3-ipython which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.text which isn't installed dpkg: warning: ignoring request to remove python3-jedi which isn't installed dpkg: warning: ignoring request to remove python3-jmespath which isn't installed Purging configuration files for python3-jsonschema (4.19.2-6) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib-inline which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed Purging configuration files for python3-numpy (1:2.2.4+ds-1.2) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-parso which isn't installed dpkg: warning: ignoring request to remove python3-pexpect which isn't installed dpkg: warning: ignoring request to remove python3-pickleshare which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-prompt-toolkit which isn't installed dpkg: warning: ignoring request to remove python3-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python3-pure-eval which isn't installed dpkg: warning: ignoring request to remove python3-pyfaidx which isn't installed dpkg: warning: ignoring request to remove python3-pyfastx which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pygtrie which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyrsistent which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-referencing which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-rpds-py which isn't installed dpkg: warning: ignoring request to remove python3-s3transfer which isn't installed dpkg: warning: ignoring request to remove python3-schedule which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-seaborn which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-stack-data which isn't installed Purging configuration files for python3-sympy (1.14.0-2) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toml which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-treetime which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typeshed which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wcwidth which isn't installed dpkg: warning: ignoring request to remove python3-xopen which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3-zopfli which isn't installed dpkg: warning: ignoring request to remove python3-zstandard which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u6) ... dpkg: warning: ignoring request to remove python3.13 which isn't installed dpkg: warning: ignoring request to remove python3.13-dev which isn't installed Purging configuration files for python3.13-minimal (3.13.7-1) ... dpkg: warning: ignoring request to remove python3.13-tk which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (8.3-3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove seqmagick which isn't installed Purging configuration files for sgml-base (1.31+nmu1) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed dpkg: warning: ignoring request to remove vcftools which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+25) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove xtl-dev which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 3m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-15', 'cpp-15-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-15', 'g++-15-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-15', 'gcc-15-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'ipython3', 'libabsl20240722:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libcc1-0:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libdsdp-5.8t64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmetis5:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.36:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsframe1:amd64', 'libsframe2:amd64', 'libsharpyuv0:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyuv0:amd64', 'libzopfli1', 'linux-libc-dev', 'mafft', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.40', 'pigz', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-autocommand', 'python3-backcall', 'python3-bcbio-gff', 'python3-beniget', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-dev', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-inflect', 'python3-ipdb', 'python3-ipython', 'python3-isodate', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-pytz', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zopfli', 'python3-zstandard', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'raxml', 'readline-common', 'rpcsvc-proto', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64'] 3m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg', '--purge', 'augur'] 3m26.4s DUMP: dpkg: warning: ignoring request to remove augur which isn't installed 3m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg', '--purge', 'augur'] 3m26.4s INFO: Running scripts post_purge 3m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_purge_exceptions'] 3m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_purge_exceptions'] 3m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg', '--purge', '--pending'] 3m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg', '--purge', '--pending'] 3m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg', '--remove', '--pending'] 3m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg', '--remove', '--pending'] 3m26.4s INFO: Running scripts post_test 3m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_test_exceptions'] 3m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'tmp/scripts/post_test_exceptions'] 3m26.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 3m26.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 3m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg-divert', '--list'] 3m26.6s DUMP: diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra 3m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'dpkg-divert', '--list'] 3m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'clean'] 3m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm', 'apt-get', 'clean'] 3m26.8s DEBUG: Recording chroot state 3m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/shm'] 3m27.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/shm'] 3m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/console'] 3m27.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/console'] 3m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/ptmx'] 3m27.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/ptmx'] 3m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/pts'] 3m27.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/dev/pts'] 3m27.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/proc'] 3m27.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm/proc'] 3m27.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 3m27.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe0aabqwm'] 3m27.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpe0aabqwm 3m27.5s INFO: PASS: Upgrading between Debian distributions. 3m27.5s INFO: PASS: All tests. 3m27.5s INFO: piuparts run ends. ret=0 End: 2025-09-18 07:47:43 GMT