Start: 2024-11-23 05:12:51 GMT

[oldstable]
Package: libngs-java
Source: ngs-sdk
Version: 2.10.9-1
Installed-Size: 110
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libngs-sdk-dev (= 2.10.9-1)
Description: Next Generation Sequencing language Bindings (Java bindings)
Multi-Arch: same
Homepage: https://github.com/ncbi/ngs
Description-md5: 7e9c9b034df5ad8390e688ab3dbb4b4b
Section: java
Priority: optional
Filename: pool/main/n/ngs-sdk/libngs-java_2.10.9-1_amd64.deb
Size: 80368
MD5sum: f9f1f5934d4b815a56607db7933cd9f2
SHA256: 62a5c7d773ef5dfb894064d1db30876b65af2ba423002fad83bfb124ed2ed7ed

[stable]
Package: libngs-java
Source: sra-sdk
Version: 3.0.3+dfsg-6~deb12u1
Installed-Size: 260
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libngs-jni (>= 3.0.3+dfsg-6~deb12u1), libngs-jni (<< 3.0.3+dfsg-6~deb12u1.1~)
Suggests: libngs-java-doc
Description: Next Generation Sequencing language Bindings (Java bindings)
Multi-Arch: same
Homepage: https://github.com/ncbi/sra-tools/
Description-md5: 7e9c9b034df5ad8390e688ab3dbb4b4b
Section: java
Priority: optional
Filename: pool/main/s/sra-sdk/libngs-java_3.0.3+dfsg-6~deb12u1_amd64.deb
Size: 110308
MD5sum: d5d95deb65e99edf8bad6317b6a5a16d
SHA256: d87c2f5d17e7915c9b5282ab6f61b62657a50fe8bdc05c57d8ce715ffdba3ce7

[testing]
Package: libngs-java
Source: sra-sdk
Version: 3.0.9+dfsg-7
Installed-Size: 262
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libngs-jni (>= 3.0.9+dfsg-7), libngs-jni (<< 3.0.9+dfsg-7.1~)
Suggests: libngs-java-doc
Description: Next Generation Sequencing language Bindings (Java bindings)
Multi-Arch: same
Homepage: https://github.com/ncbi/sra-tools/
Description-md5: 7e9c9b034df5ad8390e688ab3dbb4b4b
Section: java
Priority: optional
Filename: pool/main/s/sra-sdk/libngs-java_3.0.9+dfsg-7_amd64.deb
Size: 111784
MD5sum: 0a21f22da1a265b11267060a61ca7af0
SHA256: ec101c02ae90f7cc1c71ee51208ab90d99fcf91e22770c363802319b4ad298b9

Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -B /srv/piuparts.debian.org/slave/refchroot/oldstable22testing/reference-chroot-metadata.dat --apt libngs-java=3.0.9+dfsg-7
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d oldstable -d stable -d testing -B /srv/piuparts.debian.org/slave/refchroot/oldstable22testing/reference-chroot-metadata.dat --apt libngs-java=3.0.9+dfsg-7
0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmptiu1vhjd
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmptiu1vhjd
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz']
0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz']
0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/proc']
0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/proc']
0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/pts']
0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/pts']
0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/ptmx']
0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/ptmx']
0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/console']
0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/console']
0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/shm']
0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/shm']
0m0.4s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ bullseye main
0m0.4s DEBUG: Created policy-rc.d and chmodded it.
0m0.4s DEBUG: Created resolv.conf.
0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmptiu1vhjd/tmp/scripts/
0m0.4s INFO: Running scripts post_chroot_unpack
0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'update']
0m1.4s DUMP: 
  Hit:1 http://deb.debian.org/debian bullseye InRelease
  Reading package lists...
0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'update']
0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-yf', 'dist-upgrade']
0m1.8s DUMP: 
  Reading package lists...
  Building dependency tree...
  Calculating upgrade...
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-yf', 'dist-upgrade']
0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m2.1s DUMP: 
  f58ca9ba0b3223edf5b7797c101a5448  -
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m2.1s INFO: Running scripts post_setup
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_dummy_users']
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_dummy_users']
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_forbid_home']
0m3.2s DUMP: 
  Disabling /home
  Adding 'local diversion of /home to /home.distrib'
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_forbid_home']
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_force-unsafe-io']
0m3.2s DUMP: 
  Enabling dpkg --force-unsafe-io.
  Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
  Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
  '/bin/sync' -> 'true'
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_force-unsafe-io']
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_minimize']
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_minimize']
0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_squeeze-backports']
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_squeeze-backports']
0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_zz_backports']
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_setup_zz_backports']
0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m3.3s DUMP: 
  install ok installed	adduser	adduser	3.118+deb11u1
  install ok installed	apt	apt	2.2.4
  install ok installed	base-files	base-files	11.1+deb11u11
  install ok installed	base-passwd	base-passwd	3.5.51
  install ok installed	bash	bash	5.1-2+deb11u1
  install ok installed	bsdutils	bsdutils	1:2.36.1-8+deb11u2
  install ok installed	coreutils	coreutils	8.32-4+b1
  install ok installed	dash	dash	0.5.11+git20200708+dd9ef66-5
  install ok installed	debconf	debconf	1.5.77
  install ok installed	debian-archive-keyring	debian-archive-keyring	2021.1.1+deb11u1
  install ok installed	debianutils	debianutils	4.11.2
  install ok installed	diffutils	diffutils	1:3.7-5
  install ok installed	dpkg	dpkg	1.20.13
  install ok installed	e2fsprogs	e2fsprogs	1.46.2-2
  install ok installed	findutils	findutils	4.8.0-1
  install ok installed	gcc-10-base:amd64	gcc-10-base	10.2.1-6
  install ok installed	gcc-9-base:amd64	gcc-9-base	9.3.0-22
  install ok installed	gpgv	gpgv	2.2.27-2+deb11u2
  install ok installed	grep	grep	3.6-1+deb11u1
  install ok installed	gzip	gzip	1.10-4+deb11u1
  install ok installed	hostname	hostname	3.23
  install ok installed	init-system-helpers	init-system-helpers	1.60
  install ok installed	libacl1:amd64	libacl1	2.2.53-10
  install ok installed	libapt-pkg6.0:amd64	libapt-pkg6.0	2.2.4
  install ok installed	libattr1:amd64	libattr1	1:2.4.48-6
  install ok installed	libaudit-common	libaudit-common	1:3.0-2
  install ok installed	libaudit1:amd64	libaudit1	1:3.0-2
  install ok installed	libblkid1:amd64	libblkid1	2.36.1-8+deb11u2
  install ok installed	libbz2-1.0:amd64	libbz2-1.0	1.0.8-4
  install ok installed	libc-bin	libc-bin	2.31-13+deb11u11
  install ok installed	libc6:amd64	libc6	2.31-13+deb11u11
  install ok installed	libcap-ng0:amd64	libcap-ng0	0.7.9-2.2+b1
  install ok installed	libcom-err2:amd64	libcom-err2	1.46.2-2
  install ok installed	libcrypt1:amd64	libcrypt1	1:4.4.18-4
  install ok installed	libdb5.3:amd64	libdb5.3	5.3.28+dfsg1-0.8
  install ok installed	libdebconfclient0:amd64	libdebconfclient0	0.260
  install ok installed	libext2fs2:amd64	libext2fs2	1.46.2-2
  install ok installed	libffi7:amd64	libffi7	3.3-6
  install ok installed	libgcc-s1:amd64	libgcc-s1	10.2.1-6
  install ok installed	libgcrypt20:amd64	libgcrypt20	1.8.7-6
  install ok installed	libgmp10:amd64	libgmp10	2:6.2.1+dfsg-1+deb11u1
  install ok installed	libgnutls30:amd64	libgnutls30	3.7.1-5+deb11u5
  install ok installed	libgpg-error0:amd64	libgpg-error0	1.38-2
  install ok installed	libgssapi-krb5-2:amd64	libgssapi-krb5-2	1.18.3-6+deb11u5
  install ok installed	libhogweed6:amd64	libhogweed6	3.7.3-1
  install ok installed	libidn2-0:amd64	libidn2-0	2.3.0-5
  install ok installed	libk5crypto3:amd64	libk5crypto3	1.18.3-6+deb11u5
  install ok installed	libkeyutils1:amd64	libkeyutils1	1.6.1-2
  install ok installed	libkrb5-3:amd64	libkrb5-3	1.18.3-6+deb11u5
  install ok installed	libkrb5support0:amd64	libkrb5support0	1.18.3-6+deb11u5
  install ok installed	liblz4-1:amd64	liblz4-1	1.9.3-2
  install ok installed	liblzma5:amd64	liblzma5	5.2.5-2.1~deb11u1
  install ok installed	libmount1:amd64	libmount1	2.36.1-8+deb11u2
  install ok installed	libnettle8:amd64	libnettle8	3.7.3-1
  install ok installed	libnsl2:amd64	libnsl2	1.3.0-2
  install ok installed	libp11-kit0:amd64	libp11-kit0	0.23.22-1
  install ok installed	libpam-modules:amd64	libpam-modules	1.4.0-9+deb11u1
  install ok installed	libpam-modules-bin	libpam-modules-bin	1.4.0-9+deb11u1
  install ok installed	libpam-runtime	libpam-runtime	1.4.0-9+deb11u1
  install ok installed	libpam0g:amd64	libpam0g	1.4.0-9+deb11u1
  install ok installed	libpcre2-8-0:amd64	libpcre2-8-0	10.36-2+deb11u1
  install ok installed	libpcre3:amd64	libpcre3	2:8.39-13
  install ok installed	libseccomp2:amd64	libseccomp2	2.5.1-1+deb11u1
  install ok installed	libselinux1:amd64	libselinux1	3.1-3
  install ok installed	libsemanage-common	libsemanage-common	3.1-1
  install ok installed	libsemanage1:amd64	libsemanage1	3.1-1+b2
  install ok installed	libsepol1:amd64	libsepol1	3.1-1
  install ok installed	libsmartcols1:amd64	libsmartcols1	2.36.1-8+deb11u2
  install ok installed	libss2:amd64	libss2	1.46.2-2
  install ok installed	libssl1.1:amd64	libssl1.1	1.1.1w-0+deb11u1
  install ok installed	libstdc++6:amd64	libstdc++6	10.2.1-6
  install ok installed	libsystemd0:amd64	libsystemd0	247.3-7+deb11u5
  install ok installed	libtasn1-6:amd64	libtasn1-6	4.16.0-2+deb11u1
  install ok installed	libtinfo6:amd64	libtinfo6	6.2+20201114-2+deb11u2
  install ok installed	libtirpc-common	libtirpc-common	1.3.1-1+deb11u1
  install ok installed	libtirpc3:amd64	libtirpc3	1.3.1-1+deb11u1
  install ok installed	libudev1:amd64	libudev1	247.3-7+deb11u5
  install ok installed	libunistring2:amd64	libunistring2	0.9.10-4
  install ok installed	libuuid1:amd64	libuuid1	2.36.1-8+deb11u2
  install ok installed	libxxhash0:amd64	libxxhash0	0.8.0-2
  install ok installed	libzstd1:amd64	libzstd1	1.4.8+dfsg-2.1
  install ok installed	login	login	1:4.8.1-1
  install ok installed	logsave	logsave	1.46.2-2
  install ok installed	lsb-base	lsb-base	11.1.0
  install ok installed	mawk	mawk	1.3.4.20200120-2
  install ok installed	mount	mount	2.36.1-8+deb11u2
  install ok installed	ncurses-base	ncurses-base	6.2+20201114-2+deb11u2
  install ok installed	ncurses-bin	ncurses-bin	6.2+20201114-2+deb11u2
  install ok installed	passwd	passwd	1:4.8.1-1
  install ok installed	perl-base	perl-base	5.32.1-4+deb11u3
  install ok installed	sed	sed	4.7-1
  install ok installed	sysvinit-utils	sysvinit-utils	2.96-7+deb11u1
  install ok installed	tar	tar	1.34+dfsg-1+deb11u1
  install ok installed	tzdata	tzdata	2024a-0+deb11u1
  install ok installed	util-linux	util-linux	2.36.1-8+deb11u2
  install ok installed	zlib1g:amd64	zlib1g	1:1.2.11.dfsg-2+deb11u2
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m3.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/oldstable22testing/reference-chroot-metadata.dat
0m3.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m3.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m3.8s INFO: Running scripts is_testable
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/is_testable_uninstallable']
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/is_testable_uninstallable']
0m3.8s INFO: Running scripts pre_test
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_test_exceptions']
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_test_exceptions']
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_test_root_password']
0m3.8s DUMP: 
  New password: Retype new password: passwd: password updated successfully
0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_test_root_password']
0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'show', '--no-all-versions', 'libngs-java']
0m3.9s DUMP: 
  Package: libngs-java
  Source: ngs-sdk
  Version: 2.10.9-1
  Installed-Size: 110
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libngs-sdk-dev (= 2.10.9-1)
  Description-en: Next Generation Sequencing language Bindings (Java bindings)
   NGS is a new, domain-specific API for accessing reads, alignments and
   pileups produced from Next Generation Sequencing. The API itself is
   independent from any particular back-end implementation, and supports
   use of multiple back-ends simultaneously. It also provides a library for
   building new back-end "engines". The engine for accessing SRA data is
   contained within the sister repository ncbi-vdb.
   .
   The API is currently expressed in C++, Java and Python languages. The
   design makes it possible to maintain a high degree of similarity between
   the code in one language and code in another - especially between C++
   and Java.
   .
   Java bindings.
  Description-md5: 7e9c9b034df5ad8390e688ab3dbb4b4b
  Multi-Arch: same
  Homepage: https://github.com/ncbi/ngs
  Section: java
  Priority: optional
  Filename: pool/main/n/ngs-sdk/libngs-java_2.10.9-1_amd64.deb
  Size: 80368
  MD5sum: f9f1f5934d4b815a56607db7933cd9f2
  SHA256: 62a5c7d773ef5dfb894064d1db30876b65af2ba423002fad83bfb124ed2ed7ed
0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'show', '--no-all-versions', 'libngs-java']
0m4.0s INFO: apt-cache knows about the following packages: libngs-java
0m4.0s INFO: Running scripts pre_install
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_database-server']
0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_database-server']
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_exceptions']
0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_exceptions']
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_extras']
0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_extras']
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture']
0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture']
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy']
0m4.0s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian bullseye/main amd64 Packages
       release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy']
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy', 'libngs-java']
0m4.1s DUMP: 
  libngs-java:
    Installed: (none)
    Candidate: 2.10.9-1
    Version table:
       2.10.9-1 500
          500 http://deb.debian.org/debian bullseye/main amd64 Packages
0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy', 'libngs-java']
0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-y', 'install', 'libngs-java']
0m4.8s DUMP: 
  Reading package lists...
  Building dependency tree...
  The following additional packages will be installed:
    libngs-sdk-dev libngs-sdk2
  The following NEW packages will be installed:
    libngs-java libngs-sdk-dev libngs-sdk2
  0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded.
  Need to get 243 kB of archives.
  After this operation, 2137 kB of additional disk space will be used.
  Get:1 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk2 amd64 2.10.9-1 [59.2 kB]
  Get:2 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk-dev amd64 2.10.9-1 [104 kB]
  Get:3 http://deb.debian.org/debian bullseye/main amd64 libngs-java amd64 2.10.9-1 [80.4 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 243 kB in 0s (7082 kB/s)
  Selecting previously unselected package libngs-sdk2:amd64.
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 6674 files and directories currently installed.)
  Preparing to unpack .../libngs-sdk2_2.10.9-1_amd64.deb ...
  Unpacking libngs-sdk2:amd64 (2.10.9-1) ...
  Selecting previously unselected package libngs-sdk-dev:amd64.
  Preparing to unpack .../libngs-sdk-dev_2.10.9-1_amd64.deb ...
  Unpacking libngs-sdk-dev:amd64 (2.10.9-1) ...
  Selecting previously unselected package libngs-java:amd64.
  Preparing to unpack .../libngs-java_2.10.9-1_amd64.deb ...
  Unpacking libngs-java:amd64 (2.10.9-1) ...
  Setting up libngs-sdk2:amd64 (2.10.9-1) ...
  Setting up libngs-sdk-dev:amd64 (2.10.9-1) ...
  Setting up libngs-java:amd64 (2.10.9-1) ...
  Processing triggers for libc-bin (2.31-13+deb11u11) ...
0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-y', 'install', 'libngs-java']
0m4.8s INFO: Running scripts post_install
0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_install_exceptions']
0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_install_exceptions']
0m4.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m5.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m5.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmptiu1vhjd to stable
0m5.3s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ bookworm main
0m5.3s INFO: Running scripts pre_distupgrade
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_exceptions']
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_exceptions']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'update']
0m7.8s DUMP: 
  Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB]
  Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8789 kB]
  Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB]
  Fetched 15.0 MB in 2s (7942 kB/s)
  Reading package lists...
0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'update']
0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-yf', 'dist-upgrade']
0m21.3s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Calculating upgrade...
  The following packages were automatically installed and are no longer required:
    libngs-sdk-dev libngs-sdk2
  Use 'sudo apt autoremove' to remove them.
  The following packages will be REMOVED:
    libsemanage1
  The following NEW packages will be installed:
    gcc-12-base libcap2 libffi8 libfile-find-rule-perl libgdbm-compat4 libgdbm6
    libmbedcrypto7 libmbedtls14 libmbedx509-1 libmd0 libncbi-ngs3 libncbi-vdb3
    libngs-jni libnumber-compare-perl libperl5.36 libsemanage2 libsepol2 libssl3
    libtext-glob-perl ncbi-vdb-data perl perl-modules-5.36 usrmerge
    util-linux-extra
  The following packages will be upgraded:
    adduser apt base-files base-passwd bash bsdutils coreutils dash debconf
    debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gpgv
    grep gzip hostname init-system-helpers libacl1 libapt-pkg6.0 libattr1
    libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc6 libcap-ng0
    libcom-err2 libcrypt1 libdb5.3 libdebconfclient0 libext2fs2 libgcc-s1
    libgcrypt20 libgmp10 libgnutls30 libgpg-error0 libgssapi-krb5-2 libhogweed6
    libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1
    liblzma5 libmount1 libnettle8 libngs-java libp11-kit0 libpam-modules
    libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libseccomp2
    libselinux1 libsemanage-common libsmartcols1 libss2 libstdc++6 libsystemd0
    libtasn1-6 libtinfo6 libtirpc-common libtirpc3 libudev1 libunistring2
    libuuid1 libxxhash0 libzstd1 login logsave lsb-base mawk mount ncurses-base
    ncurses-bin passwd perl-base sed sysvinit-utils tar tzdata util-linux zlib1g
  90 upgraded, 24 newly installed, 1 to remove and 0 not upgraded.
  Need to get 44.3 MB of archives.
  After this operation, 61.2 MB of additional disk space will be used.
  Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u8 [70.9 kB]
  Get:2 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u9 [2757 kB]
  Get:3 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u9 [608 kB]
  Get:4 http://deb.debian.org/debian bookworm/main amd64 gcc-12-base amd64 12.2.0-14 [37.5 kB]
  Get:5 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 12.2.0-14 [49.9 kB]
  Get:6 http://deb.debian.org/debian bookworm/main amd64 debianutils amd64 5.7-0.5~deb12u1 [103 kB]
  Get:7 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.2.15-2+b7 [1490 kB]
  Get:8 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-5+deb12u2 [94.5 kB]
  Get:9 http://deb.debian.org/debian bookworm/main amd64 libgmp10 amd64 2:6.2.1+dfsg1-1.1 [563 kB]
  Get:10 http://deb.debian.org/debian bookworm/main amd64 coreutils amd64 9.1-1 [2897 kB]
  Get:11 http://deb.debian.org/debian bookworm/main amd64 liblzma5 amd64 5.4.1-0.2 [205 kB]
  Get:12 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB]
  Get:13 http://deb.debian.org/debian bookworm/main amd64 libzstd1 amd64 1.5.4+dfsg2-5 [290 kB]
  Get:14 http://deb.debian.org/debian bookworm/main amd64 tar amd64 1.34+dfsg-1.2+deb12u1 [836 kB]
  Get:15 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.22 [1567 kB]
  Get:16 http://deb.debian.org/debian bookworm/main amd64 dash amd64 0.5.12-2 [91.8 kB]
  Get:17 http://deb.debian.org/debian bookworm/main amd64 diffutils amd64 1:3.8-4 [352 kB]
  Get:18 http://deb.debian.org/debian bookworm/main amd64 findutils amd64 4.9.0-4 [636 kB]
  Get:19 http://deb.debian.org/debian bookworm/main amd64 grep amd64 3.8-5 [421 kB]
  Get:20 http://deb.debian.org/debian bookworm/main amd64 gzip amd64 1.12-1 [140 kB]
  Get:21 http://deb.debian.org/debian bookworm/main amd64 hostname amd64 3.23+nmu1 [10.5 kB]
  Get:22 http://deb.debian.org/debian bookworm/main amd64 login amd64 1:4.13+dfsg1-1+b1 [616 kB]
  Get:23 http://deb.debian.org/debian bookworm/main amd64 libtinfo6 amd64 6.4-4 [331 kB]
  Get:24 http://deb.debian.org/debian bookworm/main amd64 ncurses-bin amd64 6.4-4 [421 kB]
  Get:25 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.36.0-7+deb12u1 [1608 kB]
  Get:26 http://deb.debian.org/debian bookworm/main amd64 sed amd64 4.9-1 [329 kB]
  Get:27 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-5+deb12u2 [147 kB]
  Get:28 http://deb.debian.org/debian bookworm/main amd64 libpcre2-8-0 amd64 10.42-1 [261 kB]
  Get:29 http://deb.debian.org/debian bookworm/main amd64 libselinux1 amd64 3.4-1+b6 [73.7 kB]
  Get:30 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-5+deb12u2 [165 kB]
  Get:31 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-5+deb12u2 [107 kB]
  Get:32 http://deb.debian.org/debian bookworm/main amd64 libaudit-common all 1:3.0.9-1 [10.4 kB]
  Get:33 http://deb.debian.org/debian bookworm/main amd64 libcap-ng0 amd64 0.8.3-1+b3 [17.1 kB]
  Get:34 http://deb.debian.org/debian bookworm/main amd64 libaudit1 amd64 1:3.0.9-1 [46.8 kB]
  Get:35 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-5+deb12u2 [111 kB]
  Get:36 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-5+deb12u2 [1176 kB]
  Get:37 http://deb.debian.org/debian bookworm/main amd64 libgpg-error0 amd64 1.46-1 [76.9 kB]
  Get:38 http://deb.debian.org/debian bookworm/main amd64 libgcrypt20 amd64 1.10.1-3 [696 kB]
  Get:39 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 12.2.0-14 [614 kB]
  Get:40 http://deb.debian.org/debian bookworm/main amd64 libbz2-1.0 amd64 1.0.8-5+b1 [47.3 kB]
  Get:41 http://deb.debian.org/debian bookworm/main amd64 liblz4-1 amd64 1.9.4-1 [62.9 kB]
  Get:42 http://deb.debian.org/debian bookworm/main amd64 libcap2 amd64 1:2.66-4 [27.0 kB]
  Get:43 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.31-1~deb12u1 [332 kB]
  Get:44 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.31-1~deb12u1 [109 kB]
  Get:45 http://deb.debian.org/debian bookworm/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB]
  Get:46 http://deb.debian.org/debian bookworm/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB]
  Get:47 http://deb.debian.org/debian bookworm/main amd64 libapt-pkg6.0 amd64 2.6.1 [907 kB]
  Get:48 http://deb.debian.org/debian bookworm/main amd64 libnettle8 amd64 3.8.1-2 [288 kB]
  Get:49 http://deb.debian.org/debian bookworm/main amd64 libhogweed6 amd64 3.8.1-2 [328 kB]
  Get:50 http://deb.debian.org/debian bookworm/main amd64 libunistring2 amd64 1.0-2 [437 kB]
  Get:51 http://deb.debian.org/debian bookworm/main amd64 libidn2-0 amd64 2.3.3-1+b1 [124 kB]
  Get:52 http://deb.debian.org/debian bookworm/main amd64 libffi8 amd64 3.4.4-1 [22.9 kB]
  Get:53 http://deb.debian.org/debian bookworm/main amd64 libp11-kit0 amd64 0.24.1-2 [345 kB]
  Get:54 http://deb.debian.org/debian bookworm/main amd64 libtasn1-6 amd64 4.19.0-2 [56.6 kB]
  Get:55 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u3 [1405 kB]
  Get:56 http://deb.debian.org/debian bookworm/main amd64 libsemanage-common all 3.4-1 [21.6 kB]
  Get:57 http://deb.debian.org/debian bookworm/main amd64 libsepol2 amd64 3.4-2.1 [276 kB]
  Get:58 http://deb.debian.org/debian bookworm/main amd64 libsemanage2 amd64 3.4-1+b5 [89.9 kB]
  Get:59 http://deb.debian.org/debian bookworm/main amd64 passwd amd64 1:4.13+dfsg1-1+b1 [972 kB]
  Get:60 http://deb.debian.org/debian bookworm/main amd64 debconf all 1.5.82 [121 kB]
  Get:61 http://deb.debian.org/debian bookworm/main amd64 libpam0g amd64 1.5.2-6+deb12u1 [92.0 kB]
  Get:62 http://deb.debian.org/debian bookworm/main amd64 libcrypt1 amd64 1:4.4.33-2 [89.5 kB]
  Get:63 http://deb.debian.org/debian bookworm/main amd64 libpam-modules-bin amd64 1.5.2-6+deb12u1 [75.6 kB]
  Get:64 http://deb.debian.org/debian bookworm/main amd64 libpam-modules amd64 1.5.2-6+deb12u1 [291 kB]
  Get:65 http://deb.debian.org/debian bookworm/main amd64 adduser all 3.134 [183 kB]
  Get:66 http://deb.debian.org/debian bookworm/main amd64 gpgv amd64 2.2.40-1.1 [648 kB]
  Get:67 http://deb.debian.org/debian bookworm/main amd64 debian-archive-keyring all 2023.3+deb12u1 [161 kB]
  Get:68 http://deb.debian.org/debian bookworm/main amd64 libseccomp2 amd64 2.5.4-1+deb12u1 [46.8 kB]
  Get:69 http://deb.debian.org/debian bookworm/main amd64 apt amd64 2.6.1 [1373 kB]
  Get:70 http://deb.debian.org/debian bookworm/main amd64 libdebconfclient0 amd64 0.270 [9900 B]
  Get:71 http://deb.debian.org/debian bookworm/main amd64 base-passwd amd64 3.6.1 [60.0 kB]
  Get:72 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB]
  Get:73 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB]
  Get:74 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB]
  Get:75 http://deb.debian.org/debian bookworm/main amd64 libdb5.3 amd64 5.3.28+dfsg2-1 [697 kB]
  Get:76 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB]
  Get:77 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB]
  Get:78 http://deb.debian.org/debian bookworm/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
  Get:79 http://deb.debian.org/debian bookworm/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
  Get:80 http://deb.debian.org/debian bookworm/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB]
  Get:81 http://deb.debian.org/debian bookworm/main amd64 usrmerge all 37~deb12u1 [13.3 kB]
  Get:82 http://deb.debian.org/debian bookworm/main amd64 init-system-helpers all 1.65.2 [49.8 kB]
  Get:83 http://deb.debian.org/debian bookworm/main amd64 ncurses-base all 6.4-4 [261 kB]
  Get:84 http://deb.debian.org/debian bookworm/main amd64 sysvinit-utils amd64 3.06-4 [31.0 kB]
  Get:85 http://deb.debian.org/debian bookworm/main amd64 lsb-base all 11.6 [4584 B]
  Get:86 http://deb.debian.org/debian bookworm/main amd64 logsave amd64 1.47.0-2 [19.6 kB]
  Get:87 http://deb.debian.org/debian bookworm/main amd64 libext2fs2 amd64 1.47.0-2 [205 kB]
  Get:88 http://deb.debian.org/debian bookworm/main amd64 e2fsprogs amd64 1.47.0-2 [571 kB]
  Get:89 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-5+deb12u2 [134 kB]
  Get:90 http://deb.debian.org/debian bookworm/main amd64 libpam-runtime all 1.5.2-6+deb12u1 [161 kB]
  Get:91 http://deb.debian.org/debian bookworm/main amd64 libacl1 amd64 2.3.1-3 [31.5 kB]
  Get:92 http://deb.debian.org/debian bookworm/main amd64 libattr1 amd64 1:2.5.1-4 [22.2 kB]
  Get:93 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB]
  Get:94 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-5+deb12u2 [28.7 kB]
  Get:95 http://deb.debian.org/debian bookworm/main amd64 mawk amd64 1.3.4.20200120-3.1 [119 kB]
  Get:96 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2024a-0+deb12u1 [297 kB]
  Get:97 http://deb.debian.org/debian bookworm/main amd64 libcom-err2 amd64 1.47.0-2 [19.8 kB]
  Get:98 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB]
  Get:99 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB]
  Get:100 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB]
  Get:101 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB]
  Get:102 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B]
  Get:103 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.15-1~deb12u1 [2025 kB]
  Get:104 http://deb.debian.org/debian bookworm/main amd64 libmbedcrypto7 amd64 2.28.3-1 [277 kB]
  Get:105 http://deb.debian.org/debian bookworm/main amd64 libmbedx509-1 amd64 2.28.3-1 [128 kB]
  Get:106 http://deb.debian.org/debian bookworm/main amd64 libmbedtls14 amd64 2.28.3-1 [163 kB]
  Get:107 http://deb.debian.org/debian bookworm/main amd64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB]
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  Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) over (1.18.3-6+deb11u5) ...
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  Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u2) over (1.18.3-6+deb11u5) ...
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  Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u2) over (1.18.3-6+deb11u5) ...
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  Unpacking libkeyutils1:amd64 (1.6.3-2) over (1.6.1-2) ...
  Selecting previously unselected package libssl3:amd64.
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  Unpacking libssl3:amd64 (3.0.15-1~deb12u1) ...
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  Unpacking libncbi-vdb3:amd64 (3.0.2+dfsg-2) ...
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  Unpacking libncbi-ngs3:amd64 (3.0.3+dfsg-6~deb12u1) ...
  Selecting previously unselected package libngs-jni:amd64.
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  Unpacking libngs-jni:amd64 (3.0.3+dfsg-6~deb12u1) ...
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  Unpacking libngs-java:amd64 (3.0.3+dfsg-6~deb12u1) over (2.10.9-1) ...
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  Unpacking libss2:amd64 (1.47.0-2) over (1.46.2-2) ...
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  Unpacking libtirpc-common (1.3.3+ds-1) over (1.3.1-1+deb11u1) ...
  Preparing to unpack .../19-libtirpc3_1.3.3+ds-1_amd64.deb ...
  Unpacking libtirpc3:amd64 (1.3.3+ds-1) over (1.3.1-1+deb11u1) ...
  Setting up lsb-base (11.6) ...
  Setting up libkeyutils1:amd64 (1.6.3-2) ...
  Setting up libtirpc-common (1.3.3+ds-1) ...
  Setting up libssl3:amd64 (3.0.15-1~deb12u1) ...
  Setting up libcom-err2:amd64 (1.47.0-2) ...
  Setting up libkrb5support0:amd64 (1.20.1-2+deb12u2) ...
  Setting up tzdata (2024a-0+deb12u1) ...
  
  Current default time zone: 'Etc/UTC'
  Local time is now:      Sat Nov 23 05:13:12 UTC 2024.
  Universal Time is now:  Sat Nov 23 05:13:12 UTC 2024.
  Run 'dpkg-reconfigure tzdata' if you wish to change it.
  
  Setting up libmbedcrypto7:amd64 (2.28.3-1) ...
  Setting up libss2:amd64 (1.47.0-2) ...
  Setting up util-linux (2.38.1-5+deb12u2) ...
  Setting up libk5crypto3:amd64 (1.20.1-2+deb12u2) ...
  Setting up logsave (1.47.0-2) ...
  Setting up mount (2.38.1-5+deb12u2) ...
  Setting up ncbi-vdb-data (3.0.2+dfsg-2) ...
  Setting up mawk (1.3.4.20200120-3.1) ...
  Setting up libkrb5-3:amd64 (1.20.1-2+deb12u2) ...
  Setting up libmbedx509-1:amd64 (2.28.3-1) ...
  Setting up libmbedtls14:amd64 (2.28.3-1) ...
  Setting up libncbi-vdb3:amd64 (3.0.2+dfsg-2) ...
  Setting up e2fsprogs (1.47.0-2) ...
  Installing new version of config file /etc/mke2fs.conf ...
  Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ...
  Setting up libncbi-ngs3:amd64 (3.0.3+dfsg-6~deb12u1) ...
  Setting up libtirpc3:amd64 (1.3.3+ds-1) ...
  Setting up libngs-jni:amd64 (3.0.3+dfsg-6~deb12u1) ...
  Setting up libngs-java:amd64 (3.0.3+dfsg-6~deb12u1) ...
  Processing triggers for debianutils (5.7-0.5~deb12u1) ...
  Processing triggers for libc-bin (2.36-9+deb12u9) ...
0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-yf', 'dist-upgrade']
0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m22.1s DUMP: 
  9667be4591f2cce307f0cd9e8fe66190  -
0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'show', '--no-all-versions', 'libngs-java']
0m22.3s DUMP: 
  Package: libngs-java
  Source: sra-sdk
  Version: 3.0.3+dfsg-6~deb12u1
  Installed-Size: 260
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libngs-jni (>= 3.0.3+dfsg-6~deb12u1), libngs-jni (<< 3.0.3+dfsg-6~deb12u1.1~)
  Suggests: libngs-java-doc
  Description-en: Next Generation Sequencing language Bindings (Java bindings)
   NGS is a new, domain-specific API for accessing reads, alignments and
   pileups produced from Next Generation Sequencing. The API itself is
   independent from any particular back-end implementation, and supports
   use of multiple back-ends simultaneously. It also provides a library for
   building new back-end "engines". The engine for accessing SRA data is
   contained within the sister repository ncbi-vdb.
   .
   The API is currently expressed in C++, Java and Python languages. The
   design makes it possible to maintain a high degree of similarity between
   the code in one language and code in another - especially between C++
   and Java.
   .
   Java bindings.
  Description-md5: 7e9c9b034df5ad8390e688ab3dbb4b4b
  Multi-Arch: same
  Homepage: https://github.com/ncbi/sra-tools/
  Section: java
  Priority: optional
  Filename: pool/main/s/sra-sdk/libngs-java_3.0.3+dfsg-6~deb12u1_amd64.deb
  Size: 110308
  MD5sum: d5d95deb65e99edf8bad6317b6a5a16d
  SHA256: d87c2f5d17e7915c9b5282ab6f61b62657a50fe8bdc05c57d8ce715ffdba3ce7
0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'show', '--no-all-versions', 'libngs-java']
0m22.3s INFO: apt-cache knows about the following packages: libngs-java
0m22.3s INFO: Running scripts pre_install
0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_database-server']
0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_database-server']
0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_exceptions']
0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_exceptions']
0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_extras']
0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_extras']
0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture']
0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture']
0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy']
0m22.4s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian bookworm/main amd64 Packages
       release v=12.8,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy']
0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy', 'libngs-java']
0m22.5s DUMP: 
  libngs-java:
    Installed: 3.0.3+dfsg-6~deb12u1
    Candidate: 3.0.3+dfsg-6~deb12u1
    Version table:
   *** 3.0.3+dfsg-6~deb12u1 500
          500 http://deb.debian.org/debian bookworm/main amd64 Packages
          100 /var/lib/dpkg/status
0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy', 'libngs-java']
0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-y', 'install', 'libngs-java']
0m22.8s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  libngs-java is already the newest version (3.0.3+dfsg-6~deb12u1).
  The following packages were automatically installed and are no longer required:
    libngs-sdk-dev libngs-sdk2
  Use 'sudo apt autoremove' to remove them.
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-y', 'install', 'libngs-java']
0m22.8s INFO: Running scripts post_install
0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_install_exceptions']
0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_install_exceptions']
0m22.8s INFO: Running scripts post_distupgrade
0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_base_cleanup']
0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_base_cleanup']
0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_exceptions']
0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_exceptions']
0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_zz_backports']
0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_zz_backports']
0m22.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m23.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m23.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmptiu1vhjd to testing
0m23.3s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ trixie main
0m23.3s INFO: Running scripts pre_distupgrade
0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_exceptions']
0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_exceptions']
0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'update']
0m25.8s DUMP: 
  Get:1 http://deb.debian.org/debian trixie InRelease [172 kB]
  Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9372 kB]
  Get:3 http://deb.debian.org/debian trixie/main Translation-en [6266 kB]
  Fetched 15.8 MB in 2s (9154 kB/s)
  Reading package lists...
0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'update']
0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-yf', 'dist-upgrade']
0m41.1s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Calculating upgrade...
  The following packages were automatically installed and are no longer required:
    gcc-12-base libmbedcrypto7 libmbedtls14 libmbedx509-1 libngs-sdk-dev
    libngs-sdk2 libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  The following packages will be REMOVED:
    libapt-pkg6.0 libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libgnutls30
    libhogweed6 libnettle8 libssl3 libtirpc3
  The following NEW packages will be installed:
    gcc-14-base libapt-pkg6.0t64 libbsd0 libdb5.3t64 libext2fs2t64
    libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libmbedcrypto16
    libmbedtls21 libmbedx509-7 libnettle8t64 libperl5.40 libssl3t64 libtirpc3t64
    libunistring5 login.defs openssl-provider-legacy perl-modules-5.40
  The following packages will be upgraded:
    adduser apt base-files base-passwd bash bsdutils coreutils dash debconf
    debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils
    gcc-12-base gpgv grep gzip hostname init-system-helpers libacl1 libattr1
    libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc6 libcap-ng0
    libcap2 libcom-err2 libcrypt1 libdebconfclient0 libffi8 libgcc-s1
    libgcrypt20 libgmp10 libgpg-error0 libgssapi-krb5-2 libidn2-0 libk5crypto3
    libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmd0 libmount1
    libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libnsl2 libp11-kit0
    libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0
    libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2
    libsmartcols1 libss2 libstdc++6 libsystemd0 libtasn1-6 libtinfo6
    libtirpc-common libudev1 libuuid1 libxxhash0 libzstd1 login logsave mawk
    mount ncbi-vdb-data ncurses-base ncurses-bin passwd perl perl-base sed
    sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra zlib1g
  94 upgraded, 20 newly installed, 10 to remove and 0 not upgraded.
  Need to get 46.1 MB of archives.
  After this operation, 59.6 MB of additional disk space will be used.
  Get:1 http://deb.debian.org/debian trixie/main amd64 base-files amd64 13.5 [72.8 kB]
  Get:2 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.40-3 [2807 kB]
  Get:3 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.40-3 [627 kB]
  Get:4 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-8 [47.2 kB]
  Get:5 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-8 [72.7 kB]
  Get:6 http://deb.debian.org/debian trixie/main amd64 debianutils amd64 5.21 [92.1 kB]
  Get:7 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.32-1+b2 [1500 kB]
  Get:8 http://deb.debian.org/debian trixie/main amd64 libcap2 amd64 1:2.66-5+b1 [27.8 kB]
  Get:9 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257~rc2-3 [447 kB]
  Get:10 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.40.2-11 [105 kB]
  Get:11 http://deb.debian.org/debian trixie/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b2 [560 kB]
  Get:12 http://deb.debian.org/debian trixie/main amd64 libzstd1 amd64 1.5.6+dfsg-1+b1 [300 kB]
  Get:13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB]
  Get:14 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB]
  Get:15 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB]
  Get:16 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB]
  Get:17 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB]
  Get:18 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
  Get:19 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.3.2-2 [2271 kB]
  Get:20 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.3.2-2 [298 kB]
  Get:21 http://deb.debian.org/debian trixie/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB]
  Get:22 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.0-7 [267 kB]
  Get:23 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.0-7 [3017 kB]
  Get:24 http://deb.debian.org/debian trixie/main amd64 libpam-modules-bin amd64 1.5.3-7+b1 [54.1 kB]
  Get:25 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB]
  Get:26 http://deb.debian.org/debian trixie/main amd64 libpam-modules amd64 1.5.3-7+b1 [267 kB]
  Get:27 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB]
  Get:28 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB]
  Get:29 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.0-7 [4324 kB]
  Get:30 http://deb.debian.org/debian trixie/main amd64 perl-base amd64 5.40.0-7 [1675 kB]
  Get:31 http://deb.debian.org/debian trixie/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB]
  Get:32 http://deb.debian.org/debian trixie/main amd64 libcap-ng0 amd64 0.8.5-3+b1 [17.5 kB]
  Get:33 http://deb.debian.org/debian trixie/main amd64 libaudit1 amd64 1:4.0.2-2 [54.9 kB]
  Get:34 http://deb.debian.org/debian trixie/main amd64 libcrypt1 amd64 1:4.4.36-5 [89.8 kB]
  Get:35 http://deb.debian.org/debian trixie/main amd64 debconf all 1.5.87 [119 kB]
  Get:36 http://deb.debian.org/debian trixie/main amd64 libpam0g amd64 1.5.3-7+b1 [68.3 kB]
  Get:37 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.42-4+b2 [266 kB]
  Get:38 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.7-3+b1 [77.0 kB]
  Get:39 http://deb.debian.org/debian trixie/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB]
  Get:40 http://deb.debian.org/debian trixie/main amd64 usrmerge all 39 [13.1 kB]
  Get:41 http://deb.debian.org/debian trixie/main amd64 coreutils amd64 9.5-1+b1 [2922 kB]
  Get:42 http://deb.debian.org/debian trixie/main amd64 dash amd64 0.5.12-9 [93.2 kB]
  Get:43 http://deb.debian.org/debian trixie/main amd64 diffutils amd64 1:3.10-1 [375 kB]
  Get:44 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.50-4 [81.6 kB]
  Get:45 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-6 [843 kB]
  Get:46 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-8 [714 kB]
  Get:47 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.10-1+b1 [305 kB]
  Get:48 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.10-1+b1 [335 kB]
  Get:49 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-2+b1 [429 kB]
  Get:50 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.2-1+b1 [429 kB]
  Get:51 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB]
  Get:52 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB]
  Get:53 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
  Get:54 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB]
  Get:55 http://deb.debian.org/debian trixie/main amd64 libxxhash0 amd64 0.8.2-2+b2 [26.6 kB]
  Get:56 http://deb.debian.org/debian trixie/main amd64 liblz4-1 amd64 1.9.4-3+b1 [60.3 kB]
  Get:57 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.6.3-1+b1 [272 kB]
  Get:58 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257~rc2-3 [147 kB]
  Get:59 http://deb.debian.org/debian trixie/main amd64 libapt-pkg6.0t64 amd64 2.9.10 [1045 kB]
  Get:60 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.10 [1413 kB]
  Get:61 http://deb.debian.org/debian trixie/main amd64 tar amd64 1.35+dfsg-3 [813 kB]
  Get:62 http://deb.debian.org/debian trixie/main amd64 dpkg amd64 1.22.11 [1531 kB]
  Get:63 http://deb.debian.org/debian trixie/main amd64 findutils amd64 4.10.0-3 [700 kB]
  Get:64 http://deb.debian.org/debian trixie/main amd64 grep amd64 3.11-4 [431 kB]
  Get:65 http://deb.debian.org/debian trixie/main amd64 gzip amd64 1.12-1.1 [133 kB]
  Get:66 http://deb.debian.org/debian trixie/main amd64 hostname amd64 3.25 [11.0 kB]
  Get:67 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.16.0-5 [185 kB]
  Get:68 http://deb.debian.org/debian trixie/main amd64 libpam-runtime all 1.5.3-7 [140 kB]
  Get:69 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.40.2-11 [81.5 kB]
  Get:70 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5-2+b1 [344 kB]
  Get:71 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5-2+b1 [434 kB]
  Get:72 http://deb.debian.org/debian trixie/main amd64 sed amd64 4.9-2 [329 kB]
  Get:73 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.40.2-11 [168 kB]
  Get:74 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.40.2-11 [199 kB]
  Get:75 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.40.2-11 [139 kB]
  Get:76 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.40.2-11 [35.9 kB]
  Get:77 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.40.2-11 [1213 kB]
  Get:78 http://deb.debian.org/debian trixie/main amd64 util-linux-extra amd64 2.40.2-11 [265 kB]
  Get:79 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.273 [10.1 kB]
  Get:80 http://deb.debian.org/debian trixie/main amd64 base-passwd amd64 3.6.5 [53.1 kB]
  Get:81 http://deb.debian.org/debian trixie/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB]
  Get:82 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-2 [131 kB]
  Get:83 http://deb.debian.org/debian trixie/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB]
  Get:84 http://deb.debian.org/debian trixie/main amd64 libattr1 amd64 1:2.5.2-2 [22.7 kB]
  Get:85 http://deb.debian.org/debian trixie/main amd64 libsemanage-common all 3.7-2 [7108 B]
  Get:86 http://deb.debian.org/debian trixie/main amd64 libsepol2 amd64 3.7-1 [293 kB]
  Get:87 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.7-2+b1 [91.2 kB]
  Get:88 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.16.0-5 [1232 kB]
  Get:89 http://deb.debian.org/debian trixie/main amd64 adduser all 3.137 [140 kB]
  Get:90 http://deb.debian.org/debian trixie/main amd64 gpgv amd64 2.2.45-2 [219 kB]
  Get:91 http://deb.debian.org/debian trixie/main amd64 debian-archive-keyring all 2023.4 [161 kB]
  Get:92 http://deb.debian.org/debian trixie/main amd64 libseccomp2 amd64 2.5.5-1+b3 [47.4 kB]
  Get:93 http://deb.debian.org/debian trixie/main amd64 init-system-helpers all 1.67 [38.7 kB]
  Get:94 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5-2 [270 kB]
  Get:95 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.11-1 [33.1 kB]
  Get:96 http://deb.debian.org/debian trixie/main amd64 logsave amd64 1.47.1-1+b1 [23.0 kB]
  Get:97 http://deb.debian.org/debian trixie/main amd64 libext2fs2t64 amd64 1.47.1-1+b1 [211 kB]
  Get:98 http://deb.debian.org/debian trixie/main amd64 e2fsprogs amd64 1.47.1-1+b1 [585 kB]
  Get:99 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
  Get:100 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB]
  Get:101 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
  Get:102 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.40.2-11 [155 kB]
  Get:103 http://deb.debian.org/debian trixie/main amd64 mawk amd64 1.3.4.20240905-1 [138 kB]
  Get:104 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB]
  Get:105 http://deb.debian.org/debian trixie/main amd64 gcc-12-base amd64 12.4.0-2 [42.9 kB]
  Get:106 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB]
  Get:107 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB]
  Get:108 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB]
  Get:109 http://deb.debian.org/debian trixie/main amd64 libngs-java amd64 3.0.9+dfsg-7 [112 kB]
  Get:110 http://deb.debian.org/debian trixie/main amd64 libngs-jni amd64 3.0.9+dfsg-7 [25.6 kB]
  Get:111 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB]
  Get:112 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1189 kB]
  Get:113 http://deb.debian.org/debian trixie/main amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7 [157 kB]
  Get:114 http://deb.debian.org/debian trixie/main amd64 libss2 amd64 1.47.1-1+b1 [27.9 kB]
  debconf: delaying package configuration, since apt-utils is not installed
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  Setting up sysvinit-utils (3.11-1) ...
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  dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested:
   e2fsprogs depends on libext2fs2 (= 1.47.0-2).
  
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  Removing libext2fs2:amd64 (1.47.0-2) ...
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  Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64'
  Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
  Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64'
  Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
  Unpacking libext2fs2t64:amd64 (1.47.1-1+b1) ...
  Setting up libcom-err2:amd64 (1.47.1-1+b1) ...
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  Removing libtirpc3:amd64 (1.3.3+ds-1) ...
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  Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
  Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
  Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
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  Unpacking libngs-java:amd64 (3.0.9+dfsg-7) over (3.0.3+dfsg-6~deb12u1) ...
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  Unpacking ncbi-vdb-data (3.0.9+dfsg-2) over (3.0.2+dfsg-2) ...
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  Unpacking libncbi-ngs3:amd64 (3.0.9+dfsg-7) over (3.0.3+dfsg-6~deb12u1) ...
  Preparing to unpack .../13-libss2_1.47.1-1+b1_amd64.deb ...
  Unpacking libss2:amd64 (1.47.1-1+b1) over (1.47.0-2) ...
  Setting up libkeyutils1:amd64 (1.6.3-4) ...
  Setting up libtirpc-common (1.3.4+ds-1.3) ...
  Setting up libkrb5support0:amd64 (1.21.3-3) ...
  Setting up gcc-12-base:amd64 (12.4.0-2) ...
  Setting up tzdata (2024b-3) ...
  
  Current default time zone: 'Etc/UTC'
  Local time is now:      Sat Nov 23 05:13:32 UTC 2024.
  Universal Time is now:  Sat Nov 23 05:13:32 UTC 2024.
  Run 'dpkg-reconfigure tzdata' if you wish to change it.
  
  Setting up libss2:amd64 (1.47.1-1+b1) ...
  Setting up libk5crypto3:amd64 (1.21.3-3) ...
  Setting up logsave (1.47.1-1+b1) ...
  Setting up mount (2.40.2-11) ...
  Setting up ncbi-vdb-data (3.0.9+dfsg-2) ...
  Setting up mawk (1.3.4.20240905-1) ...
  Setting up libkrb5-3:amd64 (1.21.3-3) ...
  Setting up libmbedcrypto16:amd64 (3.6.2-3) ...
  Setting up e2fsprogs (1.47.1-1+b1) ...
  Installing new version of config file /etc/cron.d/e2scrub_all ...
  Installing new version of config file /etc/mke2fs.conf ...
  Setting up libmbedx509-7:amd64 (3.6.2-3) ...
  Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ...
  Setting up libmbedtls21:amd64 (3.6.2-3) ...
  Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
  Setting up libncbi-vdb3:amd64 (3.0.9+dfsg-2) ...
  Setting up libnsl2:amd64 (1.3.0-3+b3) ...
  Setting up libncbi-ngs3:amd64 (3.0.9+dfsg-7) ...
  Setting up libngs-jni:amd64 (3.0.9+dfsg-7) ...
  Setting up libngs-java:amd64 (3.0.9+dfsg-7) ...
  Processing triggers for debianutils (5.21) ...
  Processing triggers for libc-bin (2.40-3) ...
0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-yf', 'dist-upgrade']
0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m42.1s DUMP: 
  2b0a2a44d044633b9bfacb2e4706dd0c  -
0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'show', '--no-all-versions', 'libngs-java']
0m42.5s DUMP: 
  Package: libngs-java
  Source: sra-sdk
  Version: 3.0.9+dfsg-7
  Installed-Size: 262
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libngs-jni (>= 3.0.9+dfsg-7), libngs-jni (<< 3.0.9+dfsg-7.1~)
  Suggests: libngs-java-doc
  Description-en: Next Generation Sequencing language Bindings (Java bindings)
   NGS is a new, domain-specific API for accessing reads, alignments and
   pileups produced from Next Generation Sequencing. The API itself is
   independent from any particular back-end implementation, and supports
   use of multiple back-ends simultaneously. It also provides a library for
   building new back-end "engines". The engine for accessing SRA data is
   contained within the sister repository ncbi-vdb.
   .
   The API is currently expressed in C++, Java and Python languages. The
   design makes it possible to maintain a high degree of similarity between
   the code in one language and code in another - especially between C++
   and Java.
   .
   Java bindings.
  Description-md5: 7e9c9b034df5ad8390e688ab3dbb4b4b
  Multi-Arch: same
  Homepage: https://github.com/ncbi/sra-tools/
  Section: java
  Priority: optional
  Filename: pool/main/s/sra-sdk/libngs-java_3.0.9+dfsg-7_amd64.deb
  Size: 111784
  MD5sum: 0a21f22da1a265b11267060a61ca7af0
  SHA256: ec101c02ae90f7cc1c71ee51208ab90d99fcf91e22770c363802319b4ad298b9
0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'show', '--no-all-versions', 'libngs-java']
0m42.5s INFO: apt-cache knows about the following packages: libngs-java
0m42.5s INFO: Running scripts pre_install
0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_database-server']
0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_database-server']
0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_exceptions']
0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_exceptions']
0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_extras']
0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_extras']
0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture']
0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture']
0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy']
0m42.6s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian trixie/main amd64 Packages
       release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy']
0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy', 'libngs-java']
0m42.6s DUMP: 
  libngs-java:
    Installed: 3.0.9+dfsg-7
    Candidate: 3.0.9+dfsg-7
    Version table:
   *** 3.0.9+dfsg-7 500
          500 http://deb.debian.org/debian trixie/main amd64 Packages
          100 /var/lib/dpkg/status
0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy', 'libngs-java']
0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-y', 'install', 'libngs-java']
0m43.2s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  libngs-java is already the newest version (3.0.9+dfsg-7).
  The following packages were automatically installed and are no longer required:
    gcc-12-base libmbedcrypto7 libmbedtls14 libmbedx509-1 libngs-sdk-dev
    libngs-sdk2 libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-y', 'install', 'libngs-java']
0m43.2s INFO: Running scripts post_install
0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_install_exceptions']
0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_install_exceptions']
0m43.2s INFO: Running scripts post_distupgrade
0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_base_cleanup']
0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_base_cleanup']
0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_exceptions']
0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_exceptions']
0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_zz_backports']
0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_distupgrade_zz_backports']
0m43.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m43.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m43.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m44.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m44.4s INFO: Running scripts pre_install
0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_database-server']
0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_database-server']
0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_exceptions']
0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_exceptions']
0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_extras']
0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_extras']
0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture']
0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture']
0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy']
0m44.5s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian trixie/main amd64 Packages
       release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy']
0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy', 'libngs-java']
0m44.6s DUMP: 
  libngs-java:
    Installed: 3.0.9+dfsg-7
    Candidate: 3.0.9+dfsg-7
    Version table:
   *** 3.0.9+dfsg-7 500
          500 http://deb.debian.org/debian trixie/main amd64 Packages
          100 /var/lib/dpkg/status
0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-cache', 'policy', 'libngs-java']
0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-y', 'install', 'libngs-java=3.0.9+dfsg-7']
0m45.1s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  libngs-java is already the newest version (3.0.9+dfsg-7).
  The following packages were automatically installed and are no longer required:
    gcc-12-base libmbedcrypto7 libmbedtls14 libmbedx509-1 libngs-sdk-dev
    libngs-sdk2 libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', '-y', 'install', 'libngs-java=3.0.9+dfsg-7']
0m45.1s INFO: Running scripts post_install
0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_install_exceptions']
0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_install_exceptions']
0m45.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m45.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m45.6s INFO: /lib converted to /usr/lib by /usr merge
0m45.6s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge
0m46.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', '-ac', '--ignore-obsolete']
0m47.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', '-ac', '--ignore-obsolete']
0m47.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m47.1s DUMP: 
  0.15.6
0m47.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m47.1s INFO: Running adequate version 0.15.6 now.
0m47.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'libngs-java']
0m47.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'libngs-java']
0m47.2s INFO: Running scripts pre_remove
0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m48.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m48.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m48.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m48.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m48.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m48.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_exceptions']
0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/pre_remove_exceptions']
0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m48.5s DUMP: 
  install ok installed	adduser	adduser	3.137
  install ok installed	apt	apt	2.9.10
  install ok installed	base-files	base-files	13.5
  install ok installed	base-passwd	base-passwd	3.6.5
  install ok installed	bash	bash	5.2.32-1+b2
  install ok installed	bsdutils	bsdutils	1:2.40.2-11
  install ok installed	coreutils	coreutils	9.5-1+b1
  install ok installed	dash	dash	0.5.12-9
  install ok installed	debconf	debconf	1.5.87
  install ok installed	debian-archive-keyring	debian-archive-keyring	2023.4
  install ok installed	debianutils	debianutils	5.21
  install ok installed	diffutils	diffutils	1:3.10-1
  install ok installed	dpkg	dpkg	1.22.11
  install ok installed	e2fsprogs	e2fsprogs	1.47.1-1+b1
  install ok installed	findutils	findutils	4.10.0-3
  install ok installed	gcc-10-base:amd64	gcc-10-base	10.2.1-6
  install ok installed	gcc-12-base:amd64	gcc-12-base	12.4.0-2
  install ok installed	gcc-14-base:amd64	gcc-14-base	14.2.0-8
  install ok installed	gcc-9-base:amd64	gcc-9-base	9.3.0-22
  install ok installed	gpgv	gpgv	2.2.45-2
  install ok installed	grep	grep	3.11-4
  install ok installed	gzip	gzip	1.12-1.1
  install ok installed	hostname	hostname	3.25
  install ok installed	init-system-helpers	init-system-helpers	1.67
  install ok installed	libacl1:amd64	libacl1	2.3.2-2+b1
  install ok installed	libapt-pkg6.0t64:amd64	libapt-pkg6.0t64	2.9.10
  install ok installed	libattr1:amd64	libattr1	1:2.5.2-2
  install ok installed	libaudit-common	libaudit-common	1:4.0.2-2
  install ok installed	libaudit1:amd64	libaudit1	1:4.0.2-2
  install ok installed	libblkid1:amd64	libblkid1	2.40.2-11
  install ok installed	libbsd0:amd64	libbsd0	0.12.2-2
  install ok installed	libbz2-1.0:amd64	libbz2-1.0	1.0.8-6
  install ok installed	libc-bin	libc-bin	2.40-3
  install ok installed	libc6:amd64	libc6	2.40-3
  install ok installed	libcap-ng0:amd64	libcap-ng0	0.8.5-3+b1
  install ok installed	libcap2:amd64	libcap2	1:2.66-5+b1
  install ok installed	libcom-err2:amd64	libcom-err2	1.47.1-1+b1
  install ok installed	libcrypt1:amd64	libcrypt1	1:4.4.36-5
  install ok installed	libdb5.3t64:amd64	libdb5.3t64	5.3.28+dfsg2-9
  install ok installed	libdebconfclient0:amd64	libdebconfclient0	0.273
  install ok installed	libext2fs2t64:amd64	libext2fs2t64	1.47.1-1+b1
  install ok installed	libffi7:amd64	libffi7	3.3-6
  install ok installed	libffi8:amd64	libffi8	3.4.6-1
  install ok installed	libfile-find-rule-perl	libfile-find-rule-perl	0.34-3
  install ok installed	libgcc-s1:amd64	libgcc-s1	14.2.0-8
  install ok installed	libgcrypt20:amd64	libgcrypt20	1.11.0-6
  install ok installed	libgdbm-compat4t64:amd64	libgdbm-compat4t64	1.24-2
  install ok installed	libgdbm6t64:amd64	libgdbm6t64	1.24-2
  install ok installed	libgmp10:amd64	libgmp10	2:6.3.0+dfsg-2+b2
  install ok installed	libgnutls30t64:amd64	libgnutls30t64	3.8.8-2
  install ok installed	libgpg-error0:amd64	libgpg-error0	1.50-4
  install ok installed	libgssapi-krb5-2:amd64	libgssapi-krb5-2	1.21.3-3
  install ok installed	libhogweed6t64:amd64	libhogweed6t64	3.10-1+b1
  install ok installed	libidn2-0:amd64	libidn2-0	2.3.7-2+b1
  install ok installed	libk5crypto3:amd64	libk5crypto3	1.21.3-3
  install ok installed	libkeyutils1:amd64	libkeyutils1	1.6.3-4
  install ok installed	libkrb5-3:amd64	libkrb5-3	1.21.3-3
  install ok installed	libkrb5support0:amd64	libkrb5support0	1.21.3-3
  install ok installed	liblz4-1:amd64	liblz4-1	1.9.4-3+b1
  install ok installed	liblzma5:amd64	liblzma5	5.6.3-1+b1
  install ok installed	libmbedcrypto16:amd64	libmbedcrypto16	3.6.2-3
  install ok installed	libmbedcrypto7:amd64	libmbedcrypto7	2.28.3-1
  install ok installed	libmbedtls14:amd64	libmbedtls14	2.28.3-1
  install ok installed	libmbedtls21:amd64	libmbedtls21	3.6.2-3
  install ok installed	libmbedx509-1:amd64	libmbedx509-1	2.28.3-1
  install ok installed	libmbedx509-7:amd64	libmbedx509-7	3.6.2-3
  install ok installed	libmd0:amd64	libmd0	1.1.0-2+b1
  install ok installed	libmount1:amd64	libmount1	2.40.2-11
  install ok installed	libncbi-ngs3:amd64	libncbi-ngs3	3.0.9+dfsg-7
  install ok installed	libncbi-vdb3:amd64	libncbi-vdb3	3.0.9+dfsg-2
  install ok installed	libnettle8t64:amd64	libnettle8t64	3.10-1+b1
  install ok installed	libngs-java:amd64	libngs-java	3.0.9+dfsg-7
  install ok installed	libngs-jni:amd64	libngs-jni	3.0.9+dfsg-7
  install ok installed	libngs-sdk-dev:amd64	libngs-sdk-dev	2.10.9-1
  install ok installed	libngs-sdk2:amd64	libngs-sdk2	2.10.9-1
  install ok installed	libnsl2:amd64	libnsl2	1.3.0-3+b3
  install ok installed	libnumber-compare-perl	libnumber-compare-perl	0.03-3
  install ok installed	libp11-kit0:amd64	libp11-kit0	0.25.5-2+b1
  install ok installed	libpam-modules:amd64	libpam-modules	1.5.3-7+b1
  install ok installed	libpam-modules-bin	libpam-modules-bin	1.5.3-7+b1
  install ok installed	libpam-runtime	libpam-runtime	1.5.3-7
  install ok installed	libpam0g:amd64	libpam0g	1.5.3-7+b1
  install ok installed	libpcre2-8-0:amd64	libpcre2-8-0	10.42-4+b2
  install ok installed	libpcre3:amd64	libpcre3	2:8.39-15
  install ok installed	libperl5.36:amd64	libperl5.36	5.36.0-7+deb12u1
  install ok installed	libperl5.40:amd64	libperl5.40	5.40.0-7
  install ok installed	libseccomp2:amd64	libseccomp2	2.5.5-1+b3
  install ok installed	libselinux1:amd64	libselinux1	3.7-3+b1
  install ok installed	libsemanage-common	libsemanage-common	3.7-2
  install ok installed	libsemanage2:amd64	libsemanage2	3.7-2+b1
  install ok installed	libsepol1:amd64	libsepol1	3.1-1
  install ok installed	libsepol2:amd64	libsepol2	3.7-1
  install ok installed	libsmartcols1:amd64	libsmartcols1	2.40.2-11
  install ok installed	libss2:amd64	libss2	1.47.1-1+b1
  install ok installed	libssl1.1:amd64	libssl1.1	1.1.1w-0+deb11u1
  install ok installed	libssl3t64:amd64	libssl3t64	3.3.2-2
  install ok installed	libstdc++6:amd64	libstdc++6	14.2.0-8
  install ok installed	libsystemd0:amd64	libsystemd0	257~rc2-3
  install ok installed	libtasn1-6:amd64	libtasn1-6	4.19.0-3+b3
  install ok installed	libtext-glob-perl	libtext-glob-perl	0.11-3
  install ok installed	libtinfo6:amd64	libtinfo6	6.5-2+b1
  install ok installed	libtirpc-common	libtirpc-common	1.3.4+ds-1.3
  install ok installed	libtirpc3t64:amd64	libtirpc3t64	1.3.4+ds-1.3+b1
  install ok installed	libudev1:amd64	libudev1	257~rc2-3
  install ok installed	libunistring2:amd64	libunistring2	1.0-2
  install ok installed	libunistring5:amd64	libunistring5	1.2-1+b1
  install ok installed	libuuid1:amd64	libuuid1	2.40.2-11
  install ok installed	libxxhash0:amd64	libxxhash0	0.8.2-2+b2
  install ok installed	libzstd1:amd64	libzstd1	1.5.6+dfsg-1+b1
  install ok installed	login	login	1:4.16.0-2+really2.40.2-11
  install ok installed	login.defs	login.defs	1:4.16.0-5
  install ok installed	logsave	logsave	1.47.1-1+b1
  install ok installed	lsb-base	lsb-base	11.6
  install ok installed	mawk	mawk	1.3.4.20240905-1
  install ok installed	mount	mount	2.40.2-11
  install ok installed	ncbi-vdb-data	ncbi-vdb-data	3.0.9+dfsg-2
  install ok installed	ncurses-base	ncurses-base	6.5-2
  install ok installed	ncurses-bin	ncurses-bin	6.5-2+b1
  install ok installed	openssl-provider-legacy	openssl-provider-legacy	3.3.2-2
  install ok installed	passwd	passwd	1:4.16.0-5
  install ok installed	perl	perl	5.40.0-7
  install ok installed	perl-base	perl-base	5.40.0-7
  install ok installed	perl-modules-5.36	perl-modules-5.36	5.36.0-7+deb12u1
  install ok installed	perl-modules-5.40	perl-modules-5.40	5.40.0-7
  install ok installed	sed	sed	4.9-2
  install ok installed	sysvinit-utils	sysvinit-utils	3.11-1
  install ok installed	tar	tar	1.35+dfsg-3
  install ok installed	tzdata	tzdata	2024b-3
  install ok installed	usrmerge	usrmerge	39
  install ok installed	util-linux	util-linux	2.40.2-11
  install ok installed	util-linux-extra	util-linux-extra	2.40.2-11
  install ok installed	zlib1g:amd64	zlib1g	1:1.3.dfsg+really1.3.1-1+b1
0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'remove', 'libmbedcrypto16:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedtls21:amd64', 'libmbedx509-1:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'ncbi-vdb-data']
0m49.2s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  The following packages were automatically installed and are no longer required:
    gcc-12-base libperl5.36 perl-modules-5.36
  Use 'sudo apt autoremove' to remove them.
  The following packages will be REMOVED:
    libmbedcrypto16 libmbedcrypto7 libmbedtls14 libmbedtls21 libmbedx509-1
    libmbedx509-7 libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni
    libngs-sdk-dev libngs-sdk2 ncbi-vdb-data
  0 upgraded, 0 newly installed, 13 to remove and 0 not upgraded.
  After this operation, 9656 kB disk space will be freed.
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 9806 files and directories currently installed.)
  Removing libngs-java:amd64 (3.0.9+dfsg-7) ...
  Removing libngs-jni:amd64 (3.0.9+dfsg-7) ...
  Removing libncbi-ngs3:amd64 (3.0.9+dfsg-7) ...
  Removing libncbi-vdb3:amd64 (3.0.9+dfsg-2) ...
  Removing libmbedtls21:amd64 (3.6.2-3) ...
  Removing libmbedx509-7:amd64 (3.6.2-3) ...
  Removing libmbedcrypto16:amd64 (3.6.2-3) ...
  Removing libmbedtls14:amd64 (2.28.3-1) ...
  Removing libmbedx509-1:amd64 (2.28.3-1) ...
  Removing libmbedcrypto7:amd64 (2.28.3-1) ...
  Removing libngs-sdk-dev:amd64 (2.10.9-1) ...
  Removing libngs-sdk2:amd64 (2.10.9-1) ...
  Removing ncbi-vdb-data (3.0.9+dfsg-2) ...
  Processing triggers for libc-bin (2.40-3) ...
0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'remove', 'libmbedcrypto16:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedtls21:amd64', 'libmbedx509-1:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'ncbi-vdb-data']
0m49.2s INFO: Running scripts post_remove
0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_remove_exceptions']
0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_remove_exceptions']
0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg', '--purge', 'libmbedcrypto16:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedtls21:amd64', 'libmbedx509-1:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'ncbi-vdb-data']
0m49.3s DUMP: 
  dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed
  dpkg: warning: ignoring request to remove libmbedcrypto7 which isn't installed
  dpkg: warning: ignoring request to remove libmbedtls14 which isn't installed
  dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed
  dpkg: warning: ignoring request to remove libmbedx509-1 which isn't installed
  dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed
  dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed
  dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed
  dpkg: warning: ignoring request to remove libngs-java which isn't installed
  dpkg: warning: ignoring request to remove libngs-jni which isn't installed
  dpkg: warning: ignoring request to remove libngs-sdk-dev which isn't installed
  dpkg: warning: ignoring request to remove libngs-sdk2 which isn't installed
  dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed
0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg', '--purge', 'libmbedcrypto16:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedtls21:amd64', 'libmbedx509-1:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'ncbi-vdb-data']
0m49.3s INFO: Running scripts post_purge
0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_purge_exceptions']
0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_purge_exceptions']
0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg', '--purge', '--pending']
0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg', '--purge', '--pending']
0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg', '--remove', '--pending']
0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg', '--remove', '--pending']
0m49.3s INFO: Running scripts post_test
0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_test_exceptions']
0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'tmp/scripts/post_test_exceptions']
0m49.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m49.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m49.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg-divert', '--list']
0m49.8s DUMP: 
  diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra
  diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64
  local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
  diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra
  diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64
  diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra
  local diversion of /home to /home.distrib
  diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
  diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64
  diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64
  diversion of /libx32 to /.libx32.usr-is-merged by base-files
  local diversion of /usr/bin/sync to /usr/bin/sync.distrib
  diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra
  diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra
  diversion of /lib32 to /.lib32.usr-is-merged by base-files
  diversion of /libo32 to /.libo32.usr-is-merged by base-files
  diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64
  diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64
  diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra
0m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'dpkg-divert', '--list']
0m49.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'clean']
0m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd', 'apt-get', 'clean']
0m49.8s DEBUG: Recording chroot state
0m51.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/shm']
0m51.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/shm']
0m51.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/console']
0m51.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/console']
0m51.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/ptmx']
0m51.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/ptmx']
0m51.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/pts']
0m51.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/dev/pts']
0m51.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/proc']
0m51.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd/proc']
0m51.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m51.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptiu1vhjd']
0m51.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmptiu1vhjd
0m51.2s INFO: PASS: Upgrading between Debian distributions.
0m51.2s INFO: PASS: All tests.
0m51.2s INFO: piuparts run ends.

ret=0
End: 2024-11-23 05:13:43 GMT