Start: 2025-09-12 14:58:53 GMT Package: pdb2pqr-doc Source: pdb2pqr Version: 3.6.1+dfsg-1 Installed-Size: 4230 Maintainer: Debian Med Packaging Team Architecture: all Depends: libjs-sphinxdoc (>= 5.2), sphinx-rtd-theme-common (>= 1.2.0+dfsg) Recommends: pdb2pqr Description: example files accompanying pdb2pqr Multi-Arch: foreign Homepage: https://www.poissonboltzmann.org Description-md5: d29c98b9ae193cb062bcdc32f7f32d4b Tag: role::documentation Section: doc Priority: optional Filename: pool/main/p/pdb2pqr/pdb2pqr-doc_3.6.1+dfsg-1_all.deb Size: 261840 MD5sum: b121c54365094d521a1bf584cc870b7a SHA256: ae0034d775a045b33c1c85cb07341d9a605d6ba1ea2273d4137b9c4b321ad57f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pdb2pqr-doc=3.6.1+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pdb2pqr-doc=3.6.1+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-39-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.148-1 (2025-08-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2007qjrq 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2007qjrq 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2007qjrq/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-broken-symlinks to /srv/piuparts.debian.org/tmp/tmp2007qjrq/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-get', 'update'] 0m4.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [216 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7428 kB] Fetched 17.8 MB in 3s (5996 kB/s) Reading package lists... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-get', 'update'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-get', '-yf', 'dist-upgrade'] 0m6.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-15-base libgcc-s1 libsqlite3-0 libstdc++6 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1830 kB of archives. After this operation, 152 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Fetched 1830 kB in 0s (5997 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../gcc-15-base_15.2.0-4_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-4) over (15.2.0-3) ... Setting up gcc-15-base:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-4_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-4) over (15.2.0-3) ... Setting up libstdc++6:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-4_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-4) over (15.2.0-3) ... Setting up libgcc-s1:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.46.1-8_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-8) over (3.46.1-7) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... Processing triggers for libc-bin (2.41-12) ... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-get', '-yf', 'dist-upgrade'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.2s DUMP: 477ddf4ae03f0430d32edd88f90bbf73 - 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.2s INFO: Running scripts post_setup 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_minimize'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_minimize'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_zz_backports'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_setup_zz_backports'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-get', 'clean'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-get', 'clean'] 0m8.2s DEBUG: Recording chroot state 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.6s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.1-3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.1-1 install ok installed libblkid1:amd64 libblkid1 2.41.1-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 258~rc4-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258~rc4-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.1-3 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.1-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'dpkg-divert', '--list'] 0m8.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'dpkg-divert', '--list'] 0m8.6s INFO: Running scripts is_testable 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s INFO: apt-cache does not know about any of the requested packages 0m8.6s INFO: Running scripts pre_test 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_test_exceptions'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_test_exceptions'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_test_root_password'] 0m8.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_test_root_password'] 0m8.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2007qjrq'] 0m9.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2007qjrq'] 0m9.3s DEBUG: No broken symlinks as far as we can find. 0m9.3s INFO: Running scripts pre_install 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_database-server'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_database-server'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_extras'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_extras'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2007qjrq'] 0m9.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2007qjrq'] 0m9.9s DEBUG: No broken symlinks as far as we can find. 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-cache', 'policy'] 0m10.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-cache', 'policy'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-cache', 'policy', 'pdb2pqr-doc'] 0m11.0s DUMP: pdb2pqr-doc: Installed: (none) Candidate: 3.6.1+dfsg-1 Version table: 3.6.1+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-cache', 'policy', 'pdb2pqr-doc'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-get', '-y', 'install', 'pdb2pqr-doc=3.6.1+dfsg-1'] 0m30.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates docutils-common fonts-font-awesome fonts-lato libabsl20240722 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libdav1d7 libdeflate0 libexpat1 libffi8 libfreetype6 libfribidi0 libgav1-1 libgfortran5 libglib2.0-0t64 libglib2.0-data libgpm2 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libjs-sphinxdoc liblapack3 liblcms2-2 liblerc4 libncursesw6 libopenjp2-7 libpaper-utils libpaper2 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 librav1e0.7 libreadline8t64 libsharpyuv0 libsvtav1enc2 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2-16 libyuv0 media-types netbase openssl pdb2pqr python3 python3-certifi python3-chardet python3-charset-normalizer python3-docutils python3-idna python3-minimal python3-numpy python3-numpy-dev python3-olefile python3-pdb2pqr python3-pdbx python3-pil python3-propka python3-pygments python3-requests python3-roman python3-urllib3 python3.13 python3.13-minimal readline-common sensible-utils sgml-base shared-mime-info sphinx-rtd-theme-common xdg-user-dirs xml-core Suggested packages: low-memory-monitor gpm liblcms2-utils apbs python3-doc python3-tk python3-venv python-charset-normalizer-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended gcc gfortran python-numpy-doc python3-dev python3-pytest python-pdbx-doc python-pil-doc python-propka-doc python-pygments-doc ttf-bitstream-vera python3-cryptography python3-openssl python3-socks python-requests-doc python3-brotli python3.13-venv python3.13-doc binutils binfmt-support readline-doc sgml-base-doc debhelper The following NEW packages will be installed: ca-certificates docutils-common fonts-font-awesome fonts-lato libabsl20240722 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libdav1d7 libdeflate0 libexpat1 libffi8 libfreetype6 libfribidi0 libgav1-1 libgfortran5 libglib2.0-0t64 libglib2.0-data libgpm2 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libjs-sphinxdoc liblapack3 liblcms2-2 liblerc4 libncursesw6 libopenjp2-7 libpaper-utils libpaper2 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 librav1e0.7 libreadline8t64 libsharpyuv0 libsvtav1enc2 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2-16 libyuv0 media-types netbase openssl pdb2pqr pdb2pqr-doc python3 python3-certifi python3-chardet python3-charset-normalizer python3-docutils python3-idna python3-minimal python3-numpy python3-numpy-dev python3-olefile python3-pdb2pqr python3-pdbx python3-pil python3-propka python3-pygments python3-requests python3-roman python3-urllib3 python3.13 python3.13-minimal readline-common sensible-utils sgml-base shared-mime-info sphinx-rtd-theme-common xdg-user-dirs xml-core 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 39.9 MB of archives. After this operation, 158 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:10 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-3 [74.8 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get:19 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get:21 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:22 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get:23 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20250419 [162 kB] Get:24 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:25 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:26 http://deb.debian.org/debian sid/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get:27 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 15.2.0-4 [9508 B] Get:31 http://deb.debian.org/debian sid/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get:33 http://deb.debian.org/debian sid/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libglib2.0-data all 2.84.4-3 [1286 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libgpm2 amd64 1.20.7-12 [15.0 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-5 [81.2 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 11.4.5-1 [505 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get:51 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:52 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python3-roman all 5.1-1 [11.0 kB] Get:67 http://deb.debian.org/debian sid/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-pdbx all 2.0.1-2 [17.4 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-propka all 3.5.1-2 [68.2 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:71 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get:74 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-pdb2pqr all 3.6.1+dfsg-1 [136 kB] Get:77 http://deb.debian.org/debian sid/main amd64 pdb2pqr all 3.6.1+dfsg-1 [11.5 kB] Get:78 http://deb.debian.org/debian sid/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get:79 http://deb.debian.org/debian sid/main amd64 pdb2pqr-doc all 3.6.1+dfsg-1 [262 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-olefile all 0.47-1 [39.3 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get:83 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:84 http://deb.debian.org/debian sid/main amd64 xdg-user-dirs amd64 0.18-3 [54.0 kB] Preconfiguring packages ... Fetched 39.9 MB in 2s (21.1 MB/s) Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4940 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up fonts-lato (2.015-1) ... Setting up libgpm2:amd64 (1.20.7-12) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up xdg-user-dirs (0.18-3) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libglib2.0-data (2.84.4-3) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up libatomic1:amd64 (15.2.0-4) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up libdav1d7:amd64 (1.5.1-1) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:amd64 (4.7.0-5) ... Setting up librav1e0.7:amd64 (0.7.1-9+b2) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libpaper2:amd64 (2.2.5-0.3+b2) ... Setting up openssl (3.5.2-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libyuv0:amd64 (0.0.1916.20250814-1) ... Setting up readline-common (8.3-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Setting up libavif16:amd64 (1.3.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up pdb2pqr-doc (3.6.1+dfsg-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (11.4.5-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up python3 (3.13.7-1) ... Setting up python3-roman (5.1-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-propka (3.5.1-2) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-olefile (0.47-1) ... Setting up python3-pdbx (2.0.1-2) ... Setting up python3-pil:amd64 (11.3.0-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-pdb2pqr (3.6.1+dfsg-1) ... Setting up pdb2pqr (3.6.1+dfsg-1) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'apt-get', '-y', 'install', 'pdb2pqr-doc=3.6.1+dfsg-1'] 0m30.7s INFO: Running scripts post_install 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_install_exceptions'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_install_exceptions'] 0m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'systemd-tmpfiles', '--cat-config'] 0m31.0s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m31.0s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2007qjrq', 'systemd-tmpfiles', '--cat-config'] 0m31.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2007qjrq'] 0m31.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2007qjrq'] 0m32.5s ERROR: FAIL: Broken symlinks: /usr/share/doc/pdb2pqr/html/_static/underscore.js -> ../../../../javascript/sphinxdoc/1.0/underscore.js (pdb2pqr-doc) /usr/share/doc/pdb2pqr/html/_static/jquery.js -> ../../../../javascript/sphinxdoc/1.0/jquery.js (pdb2pqr-doc) /usr/share/doc/pdb2pqr/html/_static/_sphinx_javascript_frameworks_compat.js -> ../../../../javascript/sphinxdoc/1.0/_sphinx_javascript_frameworks_compat.js (pdb2pqr-doc) 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/shm'] 0m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/shm'] 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/console'] 0m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/console'] 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/ptmx'] 0m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/ptmx'] 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/pts'] 0m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/dev/pts'] 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/proc'] 0m33.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2007qjrq/proc'] 0m33.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2007qjrq'] 0m33.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2007qjrq'] 0m33.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2007qjrq 0m33.7s ERROR: piuparts run ends. ret=1 End: 2025-09-12 14:59:27 GMT