Start: 2024-05-06 01:35:23 GMT Package: resfinder-example Source: resfinder Version: 4.4.2-1 Installed-Size: 858 Maintainer: Debian Med Packaging Team Architecture: all Recommends: resfinder Description: identify acquired antimicrobial resistance genes (example data) Multi-Arch: foreign Homepage: https://bitbucket.org/genomicepidemiology/resfinder Description-md5: b1c2e96cc2068944760d609b9beaea60 Section: science Priority: optional Filename: pool/main/r/resfinder/resfinder-example_4.4.2-1_all.deb Size: 574720 MD5sum: 14a75e065f08f362a5d642900a2785f9 SHA256: 56bf49c26e0f4637c5a27affa1e9d9e1096ff4d848f21dd0e286409de1cf0eb9 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt resfinder-example=4.4.2-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt resfinder-example=4.4.2-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpusz0zcok 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpusz0zcok 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpusz0zcok/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-broken-symlinks to /srv/piuparts.debian.org/tmp/tmpusz0zcok/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', 'update'] 0m4.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9854 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7189 kB] Fetched 17.2 MB in 3s (5129 kB/s) Reading package lists... 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', 'update'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', '-yf', 'dist-upgrade'] 0m5.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', '-yf', 'dist-upgrade'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.0s DUMP: fd4a727d00fad266c8e06cea8acfa1f4 - 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.0s INFO: Running scripts post_setup 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_forbid_home'] 0m7.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_forbid_home'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', 'clean'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', 'clean'] 0m7.4s DEBUG: Recording chroot state 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.9s DUMP: install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.2 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-8 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.1~rc2-1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240429-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-8 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.38-7 install ok installed libc6:amd64 libc6 2.38-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1~rc2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1~rc2-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240429-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-8 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-8 install ok installed libss2:amd64 libss2 1.47.1~rc2-1 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240429-1 install ok installed libsystemd0:amd64 libsystemd0 255.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libudev1:amd64 libudev1 255.5-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-8 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.1~rc2-1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-8 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-4 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-8 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg-divert', '--list'] 0m7.9s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg-divert', '--list'] 0m7.9s INFO: Running scripts is_testable 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: apt-cache does not know about any of the requested packages 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_test_root_password'] 0m8.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_test_root_password'] 0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 0m8.8s DEBUG: No broken symlinks as far as we can find. 0m8.8s INFO: Running scripts pre_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 0m9.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 0m9.6s DEBUG: No broken symlinks as far as we can find. 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-cache', 'policy'] 0m10.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-cache', 'policy'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-cache', 'policy', 'resfinder-example'] 0m10.9s DUMP: resfinder-example: Installed: (none) Candidate: 4.4.2-1 Version table: 4.4.2-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-cache', 'policy', 'resfinder-example'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', '-y', 'install', 'resfinder-example=4.4.2-1'] 2m53.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: adduser binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu dirmngr dpkg-dev fakeroot fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm icu-devtools isympy-common isympy3 javascript-common kma krb5-locales less libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan8 libassuan0 libatomic1 libbinutils libblas3 libblosc1 libblosc2-2t64 libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcbor0.10 libcc1-0 libclang-cpp14t64 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdeflate0 libdpkg-perl libedit2 liberror-perl libexpat1 libexpat1-dev libfakeroot libffi-dev libfido2-1 libfile-fcntllock-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-13-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1t64 libhwasan0 libhwloc-plugins libhwloc15 libicu-dev libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm14t64 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnpth0t64 libopenjp2-7 libpciaccess0 libperl5.38t64 libpfm4 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe1 libsharpyuv0 libsnappy1v5 libsqlite3-0 libssh2-1t64 libstdc++-13-dev libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-dev libxmuu1 libxnvctrl0 libxrender1 libxslt1.1 libxss1 libyaml-0-2 libz3-4 libz3-dev linux-libc-dev llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools make manpages manpages-dev media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase numba-doc ocl-icd-libopencl1 openssh-client openssl patch perl perl-modules-5.38 pinentry-curses publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-appdirs python3-attr python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-cgecore python3-cgelib python3-chardet python3-contourpy python3-cpuinfo python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-distutils python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-git python3-gitdb python3-html5lib python3-jinja2 python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-pygments python3-pyparsing python3-reportlab python3-rlpycairo python3-scipy python3-six python3-smmap python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tabulate python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-webencodings python3-wheel python3-yaml python3.11 python3.11-dev python3.11-minimal readline-common resfinder resfinder-db rpcsvc-proto sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xauth xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zlib1g-dev Suggested packages: cron quota binutils-doc gprofng-gui blt-demo bzip2-doc cpp-doc gcc-13-locales cpp-13-doc dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-13-multilib gcc-13-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-13-multilib gdb-x86-64-linux-gnu gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn parcimonie xloadimage scdaemon apache2 | lighttpd | httpd libc-devtools glibc-doc sensible-utils bzr gdbm-l10n low-memory-monitor gpm krb5-doc krb5-user libhwloc-contrib-plugins icu-doc libjs-jquery-ui-docs liblcms2-utils ncurses-doc pciutils libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libstdc++-13-doc tcl8.6 tk8.6 pkg-config llvm-14-doc make-doc man-browser opencl-icd keychain libpam-ssh monkeysphere ssh-askpass ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl pinentry-doc python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python-bottleneck-doc python-cycler-doc python-git-doc python3-genshi python-jinja2-doc llvmlite-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 nvidia-cuda-toolkit gfortran python3-pytest python-openpyxl-doc python-pandas-doc python3-statsmodels python-pil-doc python3-setuptools python-pygments-doc ttf-bitstream-vera python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python-scipy-doc texlive-fonts-extra python-sympy-doc python3-netcdf4 python-tables-doc vitables tix python3-tk-dbg python3.11-venv python3.11-doc readline-doc sgml-base-doc debhelper The following NEW packages will be installed: adduser binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu dirmngr dpkg-dev fakeroot fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm icu-devtools isympy-common isympy3 javascript-common kma krb5-locales less libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan8 libassuan0 libatomic1 libbinutils libblas3 libblosc1 libblosc2-2t64 libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcbor0.10 libcc1-0 libclang-cpp14t64 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdeflate0 libdpkg-perl libedit2 liberror-perl libexpat1 libexpat1-dev libfakeroot libffi-dev libfido2-1 libfile-fcntllock-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-13-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1t64 libhwasan0 libhwloc-plugins libhwloc15 libicu-dev libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm14t64 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnpth0t64 libopenjp2-7 libpciaccess0 libperl5.38t64 libpfm4 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe1 libsharpyuv0 libsnappy1v5 libsqlite3-0 libssh2-1t64 libstdc++-13-dev libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-dev libxmuu1 libxnvctrl0 libxrender1 libxslt1.1 libxss1 libyaml-0-2 libz3-4 libz3-dev linux-libc-dev llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools make manpages manpages-dev media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase numba-doc ocl-icd-libopencl1 openssh-client openssl patch perl perl-modules-5.38 pinentry-curses publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-appdirs python3-attr python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-cgecore python3-cgelib python3-chardet python3-contourpy python3-cpuinfo python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-distutils python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-git python3-gitdb python3-html5lib python3-jinja2 python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-pygments python3-pyparsing python3-reportlab python3-rlpycairo python3-scipy python3-six python3-smmap python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tabulate python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-webencodings python3-wheel python3-yaml python3.11 python3.11-dev python3.11-minimal readline-common resfinder resfinder-db resfinder-example rpcsvc-proto sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xauth xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zlib1g-dev 0 upgraded, 323 newly installed, 0 to remove and 0 not upgraded. Need to get 400 MB of archives. After this operation, 1901 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-4 [2907 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-5.1+b1 [73.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-5.1+b1 [48.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-4 [4281 kB] Get:5 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-4 [236 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:7 http://deb.debian.org/debian sid/main amd64 binfmt-support amd64 2.2.2-7 [64.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:9 http://deb.debian.org/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:14 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:15 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240414-1 [135 kB] Get:17 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.3-1 [896 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:23 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:24 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:25 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:26 http://deb.debian.org/debian sid/main amd64 less amd64 643-1 [148 kB] Get:27 http://deb.debian.org/debian sid/main amd64 bzip2 amd64 1.0.8-5.1 [40.3 kB] Get:28 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:29 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:30 http://deb.debian.org/debian sid/main amd64 krb5-locales all 1.20.1-6 [63.2 kB] Get:31 http://deb.debian.org/debian sid/main amd64 manpages all 6.7-2 [1392 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libcbor0.10 amd64 0.10.2-1.2 [28.2 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libfido2-1 amd64 1.14.0-1+b2 [77.7 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:39 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:41 http://deb.debian.org/debian sid/main amd64 openssh-client amd64 1:9.7p1-4 [965 kB] Get:42 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.6.1+really5.4.5-1 [503 kB] Get:43 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.42-4 [2539 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libsframe1 amd64 2.42-4 [76.0 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.42-4 [520 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.42-4 [152 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.42-4 [87.0 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.42-4 [772 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.14-2+b2 [39.9 kB] Get:50 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4 [2215 kB] Get:51 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.42-4 [80.9 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:56 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:57 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get:59 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:60 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:61 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:62 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:63 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-1 [144 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get:75 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:76 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:77 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.38-7 [49.0 kB] Get:78 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.7.12-1 [2281 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:80 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.38-7 [1913 kB] Get:82 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.2.0-24 [45.3 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.26-3+b2 [652 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.1-1+b1 [714 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-1+b2 [52.1 kB] Get:86 http://deb.debian.org/debian sid/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-24 [10.3 MB] Get:87 http://deb.debian.org/debian sid/main amd64 cpp-13 amd64 13.2.0-24 [1276 B] Get:88 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7 [4724 B] Get:89 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:13.2.0-7 [1564 B] Get:90 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 14-20240429-1 [42.1 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240429-1 [136 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14-20240429-1 [25.8 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14-20240429-1 [9216 B] Get:94 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14-20240429-1 [2724 kB] Get:95 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14-20240429-1 [1203 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14-20240429-1 [2457 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14-20240429-1 [1074 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14-20240429-1 [1487 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14-20240429-1 [145 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libgcc-13-dev amd64 13.2.0-24 [2542 kB] Get:101 http://deb.debian.org/debian sid/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-24 [19.8 MB] Get:102 http://deb.debian.org/debian sid/main amd64 gcc-13 amd64 13.2.0-24 [486 kB] Get:103 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7 [1440 B] Get:104 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:13.2.0-7 [5152 B] Get:105 http://deb.debian.org/debian sid/main amd64 libstdc++-13-dev amd64 13.2.0-24 [2264 kB] Get:106 http://deb.debian.org/debian sid/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-24 [11.3 MB] Get:107 http://deb.debian.org/debian sid/main amd64 g++-13 amd64 13.2.0-24 [15.2 kB] Get:108 http://deb.debian.org/debian sid/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7 [1200 B] Get:109 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:13.2.0-7 [1348 B] Get:110 http://deb.debian.org/debian sid/main amd64 make amd64 4.3-4.1 [396 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libdpkg-perl all 1.22.6 [631 kB] Get:112 http://deb.debian.org/debian sid/main amd64 patch amd64 2.7.6-7 [128 kB] Get:113 http://deb.debian.org/debian sid/main amd64 dpkg-dev all 1.22.6 [1317 kB] Get:114 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.10 [4516 B] Get:115 http://deb.debian.org/debian sid/main amd64 libassuan0 amd64 2.5.6-1+b1 [50.4 kB] Get:116 http://deb.debian.org/debian sid/main amd64 gpgconf amd64 2.2.40-3 [565 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libksba8 amd64 1.6.6-1 [131 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libnpth0t64 amd64 1.6-3.1 [17.9 kB] Get:122 http://deb.debian.org/debian sid/main amd64 dirmngr amd64 2.2.40-3 [793 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:124 http://deb.debian.org/debian sid/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:125 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:126 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:127 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:130 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.7.1-5 [433 kB] Get:133 http://deb.debian.org/debian sid/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:134 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.43.0-1 [2112 kB] Get:135 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.43.0-1+b1 [7541 kB] Get:136 http://deb.debian.org/debian sid/main amd64 gnupg-l10n all 2.2.40-3 [1094 kB] Get:137 http://deb.debian.org/debian sid/main amd64 gnupg-utils amd64 2.2.40-3 [928 kB] Get:138 http://deb.debian.org/debian sid/main amd64 gpg amd64 2.2.40-3 [950 kB] Get:139 http://deb.debian.org/debian sid/main amd64 pinentry-curses amd64 1.2.1-3+b2 [78.3 kB] Get:140 http://deb.debian.org/debian sid/main amd64 gpg-agent amd64 2.2.40-3 [695 kB] Get:141 http://deb.debian.org/debian sid/main amd64 gpg-wks-client amd64 2.2.40-3 [541 kB] Get:142 http://deb.debian.org/debian sid/main amd64 gpg-wks-server amd64 2.2.40-3 [532 kB] Get:143 http://deb.debian.org/debian sid/main amd64 gpgsm amd64 2.2.40-3 [671 kB] Get:144 http://deb.debian.org/debian sid/main amd64 gnupg all 2.2.40-3 [847 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:146 http://deb.debian.org/debian sid/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get:147 http://deb.debian.org/debian sid/main amd64 isympy-common all 1.12-7 [234 kB] Get:148 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:149 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-7 [3869 kB] Get:150 http://deb.debian.org/debian sid/main amd64 isympy3 all 1.12-7 [6164 B] Get:151 http://deb.debian.org/debian sid/main amd64 javascript-common all 11+nmu1 [6260 B] Get:152 http://deb.debian.org/debian sid/main amd64 kma amd64 1.4.14-2 [217 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libalgorithm-diff-xs-perl amd64 0.04-8+b3 [11.5 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libalgorithm-merge-perl all 0.08-5 [11.8 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.0-2 [29.0 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-1+b1 [49.6 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libblosc2-2t64 amd64 2.13.1+ds-3 [185 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-1 [114 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-1 [105 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libllvm14t64 amd64 1:14.0.6-20 [21.9 MB] Get:168 http://deb.debian.org/debian sid/main amd64 libclang-cpp14t64 amd64 1:14.0.6-20 [11.1 MB] Get:169 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.7.1-5 [441 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libffi-dev amd64 3.4.6-1 [60.6 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libfile-fcntllock-perl amd64 0.22-4+b3 [30.3 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240429-1 [836 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.80.0-9 [1481 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libglib2.0-data all 2.80.0-9 [1263 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libgpm2 amd64 1.20.7-11 [14.0 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get:182 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get:185 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libhwloc-plugins amd64 2.10.0-1+b1 [18.0 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get:189 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get:196 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:197 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:198 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libldap-common all 2.5.17+dfsg-1 [31.5 kB] Get:200 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:201 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b1 [44.8 kB] Get:202 http://deb.debian.org/debian sid/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.4+20240414-1 [104 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libncurses-dev amd64 6.4+20240414-1 [349 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libpfm4 amd64 4.13.0+git32-g0d4ed0e-1 [341 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get:211 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get:214 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-6 [66.0 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libtbbmalloc2 amd64 2021.11.0-2 [48.6 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libtbbbind-2-5 amd64 2021.11.0-2 [14.1 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libtbb12 amd64 2021.11.0-2 [87.6 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.3+b3 [787 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libxmuu1 amd64 2:1.1.3-3+b2 [21.9 kB] Get:227 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libz3-dev amd64 4.8.12-3.1+b2 [90.9 kB] Get:230 http://deb.debian.org/debian sid/main amd64 llvm-14-runtime amd64 1:14.0.6-20 [481 kB] Get:231 http://deb.debian.org/debian sid/main amd64 llvm-14-linker-tools amd64 1:14.0.6-20 [1292 kB] Get:232 http://deb.debian.org/debian sid/main amd64 llvm-14 amd64 1:14.0.6-20 [11.8 MB] Get:233 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:234 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get:235 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get:236 http://deb.debian.org/debian sid/main amd64 llvm-14-tools amd64 1:14.0.6-20 [407 kB] Get:237 http://deb.debian.org/debian sid/main amd64 llvm-14-dev amd64 1:14.0.6-20 [34.0 MB] Get:238 http://deb.debian.org/debian sid/main amd64 manpages-dev all 6.7-2 [2027 kB] Get:239 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-2 [3544 kB] Get:240 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-4+b1 [12.5 MB] Get:241 http://deb.debian.org/debian sid/main amd64 ncbi-blast+-legacy all 2.12.0+ds-4 [8956 B] Get:242 http://deb.debian.org/debian sid/main amd64 sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1021 kB] Get:243 http://deb.debian.org/debian sid/main amd64 numba-doc all 0.59.0+dfsg-2 [1012 kB] Get:244 http://deb.debian.org/debian sid/main amd64 publicsuffix all 20231001.0357-0.1 [125 kB] Get:245 http://deb.debian.org/debian sid/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get:246 http://deb.debian.org/debian sid/main amd64 python-biopython-doc all 1.83+dfsg1-2 [17.4 MB] Get:247 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get:248 http://deb.debian.org/debian sid/main amd64 python-odf-doc all 1.4.2-2 [213 kB] Get:249 http://deb.debian.org/debian sid/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get:250 http://deb.debian.org/debian sid/main amd64 python3-odf all 1.4.2-2 [78.0 kB] Get:251 http://deb.debian.org/debian sid/main amd64 python-odf-tools all 1.4.2-2 [28.1 kB] Get:252 http://deb.debian.org/debian sid/main amd64 python-tables-data all 3.9.2-2 [49.8 kB] Get:253 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:254 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get:255 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:256 http://deb.debian.org/debian sid/main amd64 python3-babel all 2.14.0-1 [111 kB] Get:257 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get:258 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:259 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.12.3-1 [109 kB] Get:260 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get:261 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get:262 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.26.0-1 [142 kB] Get:263 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get:264 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:265 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.2.0-1 [1149 kB] Get:266 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:267 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:268 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.83+dfsg1-2 [1634 kB] Get:269 http://deb.debian.org/debian sid/main amd64 python3-bottleneck amd64 1.3.5+ds1-3+b1 [101 kB] Get:270 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get:271 http://deb.debian.org/debian sid/main amd64 python3-soupsieve all 2.5-1 [38.1 kB] Get:272 http://deb.debian.org/debian sid/main amd64 python3-bs4 all 4.12.3-1 [133 kB] Get:273 http://deb.debian.org/debian sid/main amd64 python3-cgecore all 1.5.6+ds-1 [28.7 kB] Get:274 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get:275 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:276 http://deb.debian.org/debian sid/main amd64 python3-smmap all 6.0.0-1 [20.1 kB] Get:277 http://deb.debian.org/debian sid/main amd64 python3-gitdb all 4.0.11-1 [45.5 kB] Get:278 http://deb.debian.org/debian sid/main amd64 python3-git all 3.1.37-3 [137 kB] Get:279 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [7882 kB] Get:280 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get:281 http://deb.debian.org/debian sid/main amd64 python3-cgelib all 0.7.3-3 [46.6 kB] Get:282 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get:283 http://deb.debian.org/debian sid/main amd64 python3-cpuinfo all 9.0.0+git20221119-1 [23.2 kB] Get:284 http://deb.debian.org/debian sid/main amd64 python3-cssselect all 1.2.0-4 [21.7 kB] Get:285 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:286 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:287 http://deb.debian.org/debian sid/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get:288 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get:289 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get:290 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get:291 http://deb.debian.org/debian sid/main amd64 python3-et-xmlfile all 1.0.1-2.1 [9180 B] Get:292 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get:293 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:294 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get:295 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.2.1-1 [1995 kB] Get:296 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get:297 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b1 [299 kB] Get:298 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:299 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get:300 http://deb.debian.org/debian sid/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB] Get:301 http://deb.debian.org/debian sid/main amd64 python3-html5lib all 1.1-6 [90.5 kB] Get:302 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get:303 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get:304 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get:305 http://deb.debian.org/debian sid/main amd64 python3-llvmlite amd64 0.42.0-1+b1 [180 kB] Get:306 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:307 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get:308 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.3-2 [8167 kB] Get:309 http://deb.debian.org/debian sid/main amd64 python3-numba amd64 0.59.0+dfsg-2 [1766 kB] Get:310 http://deb.debian.org/debian sid/main amd64 python3-numexpr amd64 2.10.0-2 [101 kB] Get:311 http://deb.debian.org/debian sid/main amd64 python3-olefile all 0.46-3 [36.1 kB] Get:312 http://deb.debian.org/debian sid/main amd64 python3-openpyxl all 3.1.2+dfsg-6 [165 kB] Get:313 http://deb.debian.org/debian sid/main amd64 python3-wheel all 0.43.0-1 [52.5 kB] Get:314 http://deb.debian.org/debian sid/main amd64 python3-pip all 24.0+dfsg-2 [1517 kB] Get:315 http://deb.debian.org/debian sid/main amd64 python3-tables-lib amd64 3.9.2-2 [836 kB] Get:316 http://deb.debian.org/debian sid/main amd64 python3-tables all 3.9.2-2 [345 kB] Get:317 http://deb.debian.org/debian sid/main amd64 python3-tabulate all 0.8.10-1 [38.8 kB] Get:318 http://deb.debian.org/debian sid/main amd64 resfinder-db all 0.0+git20220524.fa32d9a-1 [9079 kB] Get:319 http://deb.debian.org/debian sid/main amd64 resfinder all 4.4.2-1 [67.8 kB] Get:320 http://deb.debian.org/debian sid/main amd64 resfinder-example all 4.4.2-1 [575 kB] Get:321 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-4 [759 kB] Get:322 http://deb.debian.org/debian sid/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get:323 http://deb.debian.org/debian sid/main amd64 xdg-user-dirs amd64 0.18-1 [54.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 400 MB in 10s (38.3 MB/s) Selecting previously unselected package perl-modules-5.38. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5205 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.38_5.38.2-4_all.deb ... Unpacking perl-modules-5.38 (5.38.2-4) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../01-libgdbm6t64_1.23-5.1+b1_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.23-5.1+b1) ... Selecting previously unselected package libgdbm-compat4t64:amd64. 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Preparing to unpack .../08-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../09-libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../10-libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../11-python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7601 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.4+20240414-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240414-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.45.3-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.3-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../7-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. 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Preparing to unpack .../python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package adduser. Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package less. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8202 files and directories currently installed.) Preparing to unpack .../000-less_643-1_amd64.deb ... Unpacking less (643-1) ... Selecting previously unselected package bzip2. Preparing to unpack .../001-bzip2_1.0.8-5.1_amd64.deb ... Unpacking bzip2 (1.0.8-5.1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package krb5-locales. Preparing to unpack .../004-krb5-locales_1.20.1-6_all.deb ... Unpacking krb5-locales (1.20.1-6) ... Selecting previously unselected package manpages. Preparing to unpack .../005-manpages_6.7-2_all.deb ... Unpacking manpages (6.7-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../006-libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../007-libedit2_3.1-20230828-1+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20230828-1+b1) ... Selecting previously unselected package libcbor0.10:amd64. Preparing to unpack .../008-libcbor0.10_0.10.2-1.2_amd64.deb ... Unpacking libcbor0.10:amd64 (0.10.2-1.2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../009-libfido2-1_1.14.0-1+b2_amd64.deb ... Unpacking libfido2-1:amd64 (1.14.0-1+b2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../010-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../011-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../012-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../013-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../014-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... 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Setting up libgpm2:amd64 (1.20.7-11) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up libgdbm6t64:amd64 (1.23-5.1+b1) ... Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ... Setting up resfinder-db (0.0+git20220524.fa32d9a-1) ... Setting up libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Setting up xdg-user-dirs (0.18-1) ... Setting up libcbor0.10:amd64 (0.10.2-1.2) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b1) ... Setting up manpages (6.7-2) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libsqlite3-0:amd64 (3.45.3-1) ... Setting up libsasl2-modules:amd64 (2.1.28+dfsg1-6) ... Setting up binutils-common:amd64 (2.42-4) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.61.0-1+b1) ... 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Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up unicode-data (15.1.0-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:amd64 (2.80.0-9) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libglib2.0-data (2.80.0-9) ... Setting up libpfm4:amd64 (4.13.0+git32-g0d4ed0e-1) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up gcc-13-base:amd64 (13.2.0-24) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libblosc2-2t64:amd64 (2.13.1+ds-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up make (4.3-4.1) ... Setting up libmpfr6:amd64 (4.2.1-1+b1) ... Setting up gnupg-l10n (2.2.40-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libncurses6:amd64 (6.4+20240414-1) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up perl-modules-5.38 (5.38.2-4) ... Setting up libquadmath0:amd64 (14-20240429-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libhwloc15:amd64 (2.10.0-1+b1) ... Setting up libmpc3:amd64 (1.3.1-1+b2) ... Setting up libatomic1:amd64 (14-20240429-1) ... Setting up patch (2.7.6-7) ... Setting up libtcl8.6:amd64 (8.6.14+dfsg-1) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up icu-devtools (72.1-4+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.4+20240414-1) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240429-1) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up libubsan1:amd64 (14-20240429-1) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Setting up libhwasan0:amd64 (14-20240429-1) ... Setting up python-biopython-doc (1.83+dfsg1-2) ... Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libasan8:amd64 (14-20240429-1) ... Setting up libblosc1:amd64 (1.21.5+ds-1+b1) ... Setting up kma (1.4.14-2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up git-man (1:2.43.0-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libperl5.38t64:amd64 (5.38.2-4) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libtsan2:amd64 (14-20240429-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up resfinder-example (4.4.2-1) ... Setting up libbinutils:amd64 (2.42-4) ... Setting up libfido2-1:amd64 (1.14.0-1+b2) ... Setting up libisl23:amd64 (0.26-3+b2) ... Setting up libc-dev-bin (2.38-7) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:amd64 (1.4.0-0.1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up publicsuffix (20231001.0357-0.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up python-tables-data (3.9.2-2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (2.0.0+dfsg-1) ... Setting up libcc1-0:amd64 (14-20240429-1) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up liblsan0:amd64 (14-20240429-1) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libitm1:amd64 (14-20240429-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.42-4) ... Setting up pinentry-curses (1.2.1-3+b2) ... Setting up libz3-dev:amd64 (4.8.12-3.1+b2) ... Setting up manpages-dev (6.7-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.17.0-1) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libxcb-render0:amd64 (1.17.0-1) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-24) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... Setting up libedit2:amd64 (3.1-20230828-1+b1) ... Setting up libxcb-shm0:amd64 (1.17.0-1) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up libtbbbind-2-5:amd64 (2021.11.0-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up perl (5.38.2-4) ... Setting up libgprofng0:amd64 (2.42-4) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up shared-mime-info (2.4-4) ... Setting up python-odf-doc (1.4.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libdpkg-perl (1.22.6) ... Setting up libllvm14t64:amd64 (1:14.0.6-20) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libgcc-13-dev:amd64 (13.2.0-24) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1+b1) ... Setting up gpgconf (2.2.40-3) ... Setting up libc6-dev:amd64 (2.38-7) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up numba-doc (0.59.0+dfsg-2) ... Setting up llvm-14-linker-tools (1:14.0.6-20) ... Setting up libicu-dev:amd64 (72.1-4+b1) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b2) ... Setting up gpg (2.2.40-3) ... Setting up libstdc++-13-dev:amd64 (13.2.0-24) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up gnupg-utils (2.2.40-3) ... Setting up binutils-x86-64-linux-gnu (2.42-4) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libncurses-dev:amd64 (6.4+20240414-1) ... Setting up gpg-agent (2.2.40-3) ... Setting up cpp-13 (13.2.0-24) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libcurl4t64:amd64 (8.7.1-5) ... Setting up libclang-cpp14t64 (1:14.0.6-20) ... Setting up libfile-fcntllock-perl (0.22-4+b3) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up openssh-client (1:9.7p1-4) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-24) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up gpgsm (2.2.40-3) ... Setting up libpython3.11t64:amd64 (3.11.9-1) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-5) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libtbb12:amd64 (2021.11.0-2) ... Setting up binutils (2.42-4) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up dpkg-dev (1.22.6) ... Setting up libxnvctrl0:amd64 (535.171.04-1) ... Setting up liberror-perl (0.17029-2) ... Setting up dirmngr (2.2.40-3) ... Setting up libxml2-dev:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up libexpat1-dev:amd64 (2.6.2-1) ... Setting up llvm-14-runtime (1:14.0.6-20) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up gcc-13 (13.2.0-24) ... Setting up git (1:2.43.0-1+b1) ... Setting up gpg-wks-server (2.2.40-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up xauth (1:1.1.2-1) ... Setting up cpp (4:13.2.0-7) ... Setting up libxss1:amd64 (1:1.2.3-1+b1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libalgorithm-diff-xs-perl:amd64 (0.04-8+b3) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up libalgorithm-merge-perl (0.08-5) ... Setting up llvm-14 (1:14.0.6-20) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-24) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7) ... Setting up gpg-wks-client (2.2.40-3) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up python3 (3.11.8-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up libhwloc-plugins:amd64 (2.10.0-1+b1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-webencodings (0.5.1-5) ... Setting up python3-tz (2024.1-2) ... Setting up gcc (4:13.2.0-7) ... Setting up ncbi-blast+ (2.12.0+ds-4+b1) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-llvmlite (0.42.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up libpython3.11-dev:amd64 (3.11.9-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-pip (24.0+dfsg-2) ... Setting up python3-cpuinfo (9.0.0+git20221119-1) ... Setting up python3-html5lib (1.1-6) ... Setting up python3-lxml:amd64 (5.2.1-1) ... Setting up python3-et-xmlfile (1.0.1-2.1) ... Setting up gnupg (2.2.40-3) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-cssselect (1.2.0-4) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-smmap (6.0.0-1) ... Setting up python3-soupsieve (2.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... Setting up ncbi-blast+-legacy (2.12.0+ds-4) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up g++-13 (13.2.0-24) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libpython3-dev:amd64 (3.11.8-1) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3.11-dev (3.11.9-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up python3-olefile (0.46-3) ... Setting up blt (2.5.3+dfsg-7) ... Setting up isympy-common (1.12-7) ... Setting up python3-tabulate (0.8.10-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-tk:amd64 (3.12.3-1) ... Setting up python3-gitdb (4.0.11-1) ... Setting up python3-bs4 (4.12.3-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-openpyxl (3.1.2+dfsg-6) ... Setting up isympy3 (1.12-7) ... Setting up python3-git (3.1.37-3) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-reportlab (4.2.0-1) ... Setting up g++ (4:13.2.0-7) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.10) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-odf (1.4.2-2) ... Setting up llvm-14-tools (1:14.0.6-20) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-tables-lib (3.9.2-2) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... Setting up python-odf-tools (1.4.2-2) ... Setting up python3-numba (0.59.0+dfsg-2) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-bottleneck (1.3.5+ds1-3+b1) ... Setting up python3-numexpr (2.10.0-2) ... Setting up llvm-14-dev (1:14.0.6-20) ... Setting up python3-cgelib (0.7.3-3) ... Setting up python3-tables (3.9.2-2) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-matplotlib (3.6.3-2) ... Processing triggers for libc-bin (2.38-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-2) ... Setting up python3-cgecore (1.5.6+ds-1) ... Setting up resfinder (4.4.2-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', '-y', 'install', 'resfinder-example=4.4.2-1'] 2m53.3s INFO: Running scripts post_install 2m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_install_exceptions'] 2m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_install_exceptions'] 2m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 2m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 2m54.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 2m55.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 3m0.2s DEBUG: No broken symlinks as far as we can find. 3m0.2s INFO: /bin converted to /usr/bin by /usr merge 3m0.2s INFO: /lib converted to /usr/lib by /usr merge 3m0.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 3m0.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 3m0.2s INFO: /sbin converted to /usr/sbin by /usr merge 3m2.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', '-ac', '--ignore-obsolete'] 3m9.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', '-ac', '--ignore-obsolete'] 3m9.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m9.5s DUMP: 0.15.6 3m9.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m9.5s INFO: Running adequate version 0.15.6 now. 3m9.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'resfinder-example'] 3m9.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'resfinder-example'] 3m9.6s INFO: Running scripts pre_remove 3m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_exceptions'] 3m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/pre_remove_exceptions'] 3m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m20.1s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.2 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed binfmt-support binfmt-support 2.2.2-7 install ok installed binutils binutils 2.42-4 install ok installed binutils-common:amd64 binutils-common 2.42-4 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.42-4 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bsdutils bsdutils 1:2.40-8 install ok installed build-essential build-essential 12.10 install ok installed bzip2 bzip2 1.0.8-5.1 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed cpp cpp 4:13.2.0-7 install ok installed cpp-13 cpp-13 13.2.0-24 install ok installed cpp-13-x86-64-linux-gnu cpp-13-x86-64-linux-gnu 13.2.0-24 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:13.2.0-7 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dirmngr dirmngr 2.2.40-3 install ok installed dpkg dpkg 1.22.6 install ok installed dpkg-dev dpkg-dev 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.1~rc2-1 install ok installed fakeroot fakeroot 1.34-1 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-lyx fonts-lyx 2.4.0~RC4-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed g++ g++ 4:13.2.0-7 install ok installed g++-13 g++-13 13.2.0-24 install ok installed g++-13-x86-64-linux-gnu g++-13-x86-64-linux-gnu 13.2.0-24 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:13.2.0-7 install ok installed gcc gcc 4:13.2.0-7 install ok installed gcc-13 gcc-13 13.2.0-24 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-24 install ok installed gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu 13.2.0-24 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240429-1 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:13.2.0-7 install ok installed git git 1:2.43.0-1+b1 install ok installed git-man git-man 1:2.43.0-1 install ok installed gnupg gnupg 2.2.40-3 install ok installed gnupg-l10n gnupg-l10n 2.2.40-3 install ok installed gnupg-utils gnupg-utils 2.2.40-3 install ok installed gpg gpg 2.2.40-3 install ok installed gpg-agent gpg-agent 2.2.40-3 install ok installed gpg-wks-client gpg-wks-client 2.2.40-3 install ok installed gpg-wks-server gpg-wks-server 2.2.40-3 install ok installed gpgconf gpgconf 2.2.40-3 install ok installed gpgsm gpgsm 2.2.40-3 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed icu-devtools icu-devtools 72.1-4+b1 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed isympy-common isympy-common 1.12-7 install ok installed isympy3 isympy3 1.12-7 install ok installed javascript-common javascript-common 11+nmu1 install ok installed kma kma 1.4.14-2 install ok installed krb5-locales krb5-locales 1.20.1-6 install ok installed less less 643-1 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libaec0:amd64 libaec0 1.1.3-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl:amd64 libalgorithm-diff-xs-perl 0.04-8+b3 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-5 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libasan8:amd64 libasan8 14-20240429-1 install ok installed libassuan0:amd64 libassuan0 2.5.6-1+b1 install ok installed libatomic1:amd64 libatomic1 14-20240429-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libbinutils:amd64 libbinutils 2.42-4 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40-8 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-1+b1 install ok installed libblosc2-2t64:amd64 libblosc2-2t64 2.13.1+ds-3 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.38-7 install ok installed libc-dev-bin libc-dev-bin 2.38-7 install ok installed libc6:amd64 libc6 2.38-7 install ok installed libc6-dev:amd64 libc6-dev 2.38-7 install ok installed libcairo2:amd64 libcairo2 1.18.0-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcbor0.10:amd64 libcbor0.10 0.10.2-1.2 install ok installed libcc1-0:amd64 libcc1-0 14-20240429-1 install ok installed libclang-cpp14t64 libclang-cpp14t64 1:14.0.6-20 install ok installed libcom-err2:amd64 libcom-err2 1.47.1~rc2-1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.42-4 install ok installed libctf0:amd64 libctf0 2.42-4 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.7.1-5 install ok installed libcurl4t64:amd64 libcurl4t64 8.7.1-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libdeflate0:amd64 libdeflate0 1.20-1 install ok installed libdpkg-perl libdpkg-perl 1.22.6 install ok installed libedit2:amd64 libedit2 3.1-20230828-1+b1 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1~rc2-1 install ok installed libfakeroot:amd64 libfakeroot 1.34-1 install ok installed libffi-dev:amd64 libffi-dev 3.4.6-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfido2-1:amd64 libfido2-1 1.14.0-1+b2 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-4+b3 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b4 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-13-dev:amd64 libgcc-13-dev 13.2.0-24 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240429-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2+b1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-5.1+b1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-5.1+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240429-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.80.0-9 install ok installed libglib2.0-data libglib2.0-data 2.80.0-9 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgomp1:amd64 libgomp1 14-20240429-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3+b1 install ok installed libgpm2:amd64 libgpm2 1.20.7-11 install ok installed libgprofng0:amd64 libgprofng0 2.42-4 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-6+b1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2+b1 install ok installed libhdf5-103-1t64:amd64 libhdf5-103-1t64 1.10.10+repack-3.3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libhwasan0:amd64 libhwasan0 14-20240429-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.10.0-1+b1 install ok installed libhwloc15:amd64 libhwloc15 2.10.0-1+b1 install ok installed libicu-dev:amd64 libicu-dev 72.1-4+b1 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b1 install ok installed libisl23:amd64 libisl23 0.26-3+b2 install ok installed libitm1:amd64 libitm1 14-20240429-1 install ok installed libjansson4:amd64 libjansson4 2.14-2+b2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.2.6-6 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-6+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-6+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-6+b1 install ok installed libksba8:amd64 libksba8 1.6.6-1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.17+dfsg-1 install ok installed libldap-common libldap-common 2.5.17+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed libllvm14t64:amd64 libllvm14t64 1:14.0.6-20 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-7 install ok installed liblsan0:amd64 liblsan0 14-20240429-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-2+b1 install ok installed libmbedcrypto7t64:amd64 libmbedcrypto7t64 2.28.8-1 install ok installed libmbedtls14t64:amd64 libmbedtls14t64 2.28.8-1 install ok installed libmbedx509-1t64:amd64 libmbedx509-1t64 2.28.8-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-8 install ok installed libmpc3:amd64 libmpc3 1.3.1-1+b2 install ok installed libmpfr6:amd64 libmpfr6 4.2.1-1+b1 install ok installed libncurses-dev:amd64 libncurses-dev 6.4+20240414-1 install ok installed libncurses6:amd64 libncurses6 6.4+20240414-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240414-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.61.0-1+b1 install ok installed libnpth0t64:amd64 libnpth0t64 1.6-3.1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-4 install ok installed libpfm4:amd64 libpfm4 4.13.0+git32-g0d4ed0e-1 install ok installed libpipeline1:amd64 libpipeline1 1.5.7-2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.43-5 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.8-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.8-1 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.9-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.9-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.9-1 install ok installed libpython3.11t64:amd64 libpython3.11t64 3.11.9-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b1 install ok installed libquadmath0:amd64 libquadmath0 14-20240429-1 install ok installed libraqm0:amd64 libraqm0 0.10.1-1+b1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-6 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg1-6 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2+b1 install ok installed libsframe1:amd64 libsframe1 2.42-4 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.4.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-8 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.0-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.3-1 install ok installed libss2:amd64 libss2 1.47.1~rc2-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-4.1+b2 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++-13-dev:amd64 libstdc++-13-dev 13.2.0-24 install ok installed libstdc++6:amd64 libstdc++6 14-20240429-1 install ok installed libsystemd0:amd64 libsystemd0 255.5-1 install ok installed libsz2:amd64 libsz2 1.1.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtbb12:amd64 libtbb12 2021.11.0-2 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2021.11.0-2 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2021.11.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.14+dfsg-1 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.14-1 install ok installed libtsan2:amd64 libtsan2 14-20240429-1 install ok installed libubsan1:amd64 libubsan1 14-20240429-1 install ok installed libudev1:amd64 libudev1 255.5-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-8 install ok installed libwebp7:amd64 libwebp7 1.4.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.4.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.4.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1+b1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-1 install ok installed libxcb1:amd64 libxcb1 1.17.0-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1+b1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b3 install ok installed libxml2-dev:amd64 libxml2-dev 2.9.14+dfsg-1.3+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.3-3+b2 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1+b1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1+b1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1+b2 install ok installed libz3-dev:amd64 libz3-dev 4.8.12-3.1+b2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed linux-libc-dev linux-libc-dev 6.7.12-1 install ok installed llvm-14 llvm-14 1:14.0.6-20 install ok installed llvm-14-dev llvm-14-dev 1:14.0.6-20 install ok installed llvm-14-linker-tools llvm-14-linker-tools 1:14.0.6-20 install ok installed llvm-14-runtime llvm-14-runtime 1:14.0.6-20 install ok installed llvm-14-tools llvm-14-tools 1:14.0.6-20 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.1~rc2-1 install ok installed make make 4.3-4.1 install ok installed manpages manpages 6.7-2 install ok installed manpages-dev manpages-dev 6.7-2 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40-8 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-4+b1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.12.0+ds-4 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-2 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed netbase netbase 6.4 install ok installed numba-doc numba-doc 0.59.0+dfsg-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1+b1 install ok installed openssh-client openssh-client 1:9.7p1-4 install ok installed openssl openssl 3.2.1-3 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed patch patch 2.7.6-7 install ok installed perl perl 5.38.2-4 install ok installed perl-base perl-base 5.38.2-4 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-4 install ok installed pinentry-curses pinentry-curses 1.2.1-3+b2 install ok installed publicsuffix publicsuffix 20231001.0357-0.1 install ok installed python-babel-localedata python-babel-localedata 2.14.0-1 install ok installed python-biopython-doc python-biopython-doc 1.83+dfsg1-2 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-2 install ok installed python-odf-doc python-odf-doc 1.4.2-2 install ok installed python-odf-tools python-odf-tools 1.4.2-2 install ok installed python-tables-data python-tables-data 3.9.2-2 install ok installed python3 python3 3.11.8-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-attr python3-attr 23.2.0-2 install ok installed python3-babel python3-babel 2.14.0-1 install ok installed python3-biopython python3-biopython 1.83+dfsg1-2 install ok installed python3-bottleneck python3-bottleneck 1.3.5+ds1-3+b1 install ok installed python3-brotli python3-brotli 1.1.0-2+b3 install ok installed python3-bs4 python3-bs4 4.12.3-1 install ok installed python3-cairo python3-cairo 1.26.0-1 install ok installed python3-cgecore python3-cgecore 1.5.6+ds-1 install ok installed python3-cgelib python3-cgelib 0.7.3-3 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-contourpy python3-contourpy 1.0.7-3 install ok installed python3-cpuinfo python3-cpuinfo 9.0.0+git20221119-1 install ok installed python3-cssselect python3-cssselect 1.2.0-4 install ok installed python3-cycler python3-cycler 0.12.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-defusedxml python3-defusedxml 0.7.1-2 install ok installed python3-dev python3-dev 3.11.8-1 install ok installed python3-distutils python3-distutils 3.12.3-1 install ok installed python3-et-xmlfile python3-et-xmlfile 1.0.1-2.1 install ok installed python3-fonttools python3-fonttools 4.46.0-1 install ok installed python3-freetype python3-freetype 2.4.0-1 install ok installed python3-fs python3-fs 2.4.16-4 install ok installed python3-git python3-git 3.1.37-3 install ok installed python3-gitdb python3-gitdb 4.0.11-1 install ok installed python3-html5lib python3-html5lib 1.1-6 install ok installed python3-jinja2 python3-jinja2 3.1.3-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.5-1 install ok installed python3-lib2to3 python3-lib2to3 3.12.3-1 install ok installed python3-llvmlite python3-llvmlite 0.42.0-1+b1 install ok installed python3-lxml:amd64 python3-lxml 5.2.1-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b3 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1 install ok installed python3-matplotlib python3-matplotlib 3.6.3-2 install ok installed python3-minimal python3-minimal 3.11.8-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-numba python3-numba 0.59.0+dfsg-2 install ok installed python3-numexpr python3-numexpr 2.10.0-2 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-8 install ok installed python3-odf python3-odf 1.4.2-2 install ok installed python3-olefile python3-olefile 0.46-3 install ok installed python3-openpyxl python3-openpyxl 3.1.2+dfsg-6 install ok installed python3-packaging python3-packaging 24.0-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-8 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-8 install ok installed python3-pil:amd64 python3-pil 10.3.0-2 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.3.0-2 install ok installed python3-pip python3-pip 24.0+dfsg-2 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pygments python3-pygments 2.17.2+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-reportlab python3-reportlab 4.2.0-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-scipy python3-scipy 1.11.4-6 install ok installed python3-six python3-six 1.16.0-6 install ok installed python3-smmap python3-smmap 6.0.0-1 install ok installed python3-soupsieve python3-soupsieve 2.5-1 install ok installed python3-sympy python3-sympy 1.12-7 install ok installed python3-tables python3-tables 3.9.2-2 install ok installed python3-tables-lib python3-tables-lib 3.9.2-2 install ok installed python3-tabulate python3-tabulate 0.8.10-1 install ok installed python3-tk:amd64 python3-tk 3.12.3-1 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b1 install ok installed python3-webencodings python3-webencodings 0.5.1-5 install ok installed python3-wheel python3-wheel 0.43.0-1 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3.11 python3.11 3.11.9-1 install ok installed python3.11-dev python3.11-dev 3.11.9-1 install ok installed python3.11-minimal python3.11-minimal 3.11.9-1 install ok installed readline-common readline-common 8.2-4 install ok installed resfinder resfinder 4.4.2-1 install ok installed resfinder-db resfinder-db 0.0+git20220524.fa32d9a-1 install ok installed resfinder-example resfinder-example 4.4.2-1 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sgml-base sgml-base 1.31 install ok installed shared-mime-info shared-mime-info 2.4-4 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 2.0.0+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed tzdata tzdata 2024a-4 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-8 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xauth xauth 1:1.1.2-1 install ok installed xdg-user-dirs xdg-user-dirs 0.18-1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.19 install ok installed xz-utils xz-utils 5.6.1+really5.4.5-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg-3.1 3m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', 'remove', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-13', 'cpp-13-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-13', 'g++-13-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-13', 'gcc-13-base:amd64', 'gcc-13-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'kma', 'krb5-locales', 'less', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libasan8:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-2t64:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcbor0.10:amd64', 'libcc1-0:amd64', 'libclang-cpp14t64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfido2-1:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-13-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm14t64:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnpth0t64:amd64', 'libopenjp2-7:amd64', 'libpciaccess0:amd64', 'libperl5.38t64:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev', 'llvm-14', 'llvm-14-dev', 'llvm-14-linker-tools', 'llvm-14-runtime', 'llvm-14-tools', 'make', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssh-client', 'openssl', 'patch', 'perl', 'perl-modules-5.38', 'pinentry-curses', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-cgecore', 'python3-cgelib', 'python3-chardet', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-git', 'python3-gitdb', 'python3-html5lib', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pygments', 'python3-pyparsing', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-smmap', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tabulate', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'resfinder', 'resfinder-db', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64', 'resfinder-example'] 4m20.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu dirmngr dpkg-dev fakeroot fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm icu-devtools isympy-common isympy3 javascript-common kma krb5-locales less libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan8 libassuan0 libatomic1 libbinutils libblas3 libblosc1 libblosc2-2t64 libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcbor0.10 libcc1-0 libclang-cpp14t64 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdeflate0 libdpkg-perl libedit2 liberror-perl libexpat1 libexpat1-dev libfakeroot libffi-dev libfido2-1 libfile-fcntllock-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-13-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1t64 libhwasan0 libhwloc-plugins libhwloc15 libicu-dev libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm14t64 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnpth0t64 libopenjp2-7 libpciaccess0 libperl5.38t64 libpfm4 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe1 libsharpyuv0 libsnappy1v5 libsqlite3-0 libssh2-1t64 libstdc++-13-dev libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-dev libxmuu1 libxnvctrl0 libxrender1 libxslt1.1 libxss1 libyaml-0-2 libz3-4 libz3-dev linux-libc-dev llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools make manpages manpages-dev media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase numba-doc ocl-icd-libopencl1 openssh-client openssl patch perl perl-modules-5.38 pinentry-curses publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-appdirs python3-attr python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-cgecore python3-cgelib python3-chardet python3-contourpy python3-cpuinfo python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-distutils python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-git python3-gitdb python3-html5lib python3-jinja2 python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-pygments python3-pyparsing python3-reportlab python3-rlpycairo python3-scipy python3-six python3-smmap python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tabulate python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-webencodings python3-wheel python3-yaml python3.11 python3.11-dev python3.11-minimal readline-common resfinder resfinder-db resfinder-example rpcsvc-proto sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xauth xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zlib1g-dev 0 upgraded, 0 newly installed, 323 to remove and 0 not upgraded. After this operation, 1901 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41915 files and directories currently installed.) Removing openssh-client (1:9.7p1-4) ... Removing gnupg (2.2.40-3) ... Removing binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing build-essential (12.10) ... Removing g++ (4:13.2.0-7) ... Removing gcc (4:13.2.0-7) ... Removing dpkg-dev (1.22.6) ... Removing g++-x86-64-linux-gnu (4:13.2.0-7) ... Removing gcc-x86-64-linux-gnu (4:13.2.0-7) ... Removing g++-13 (13.2.0-24) ... Removing g++-13-x86-64-linux-gnu (13.2.0-24) ... Removing resfinder (4.4.2-1) ... Removing python3-cgecore (1.5.6+ds-1) ... Removing python3-biopython (1.83+dfsg1-2) ... Removing python3-reportlab (4.2.0-1) ... Removing python3-matplotlib (3.6.3-2) ... Removing python3-pil.imagetk:amd64 (10.3.0-2) ... Removing python3-pil:amd64 (10.3.0-2) ... Removing python3-tk:amd64 (3.12.3-1) ... Removing blt (2.5.3+dfsg-7) ... Removing bzip2 (1.0.8-5.1) ... Removing python3-pip (24.0+dfsg-2) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:13.2.0-7) ... Removing cpp-13 (13.2.0-24) ... Removing cpp-x86-64-linux-gnu (4:13.2.0-7) ... Removing fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing libtk8.6:amd64 (8.6.14-1) ... Removing libxft2:amd64 (2.3.6-1+b1) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.26.0-1) ... Removing libcairo2:amd64 (1.18.0-3+b1) ... Removing libfontconfig1:amd64 (2.15.0-1.1) ... Removing fontconfig-config (2.15.0-1.1) ... Removing python-matplotlib-data (3.6.3-2) ... Removing fonts-dejavu-extra (2.37-8) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing numba-doc (0.59.0+dfsg-2) ... Removing sphinx-rtd-theme-common (2.0.0+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing fonts-lyx (2.4.0~RC4-1) ... Removing fonts-urw-base35 (20200910-8) ... Removing libstdc++-13-dev:amd64 (13.2.0-24) ... Removing python3-cgelib (0.7.3-3) ... Removing python3-git (3.1.37-3) ... Removing git (1:2.43.0-1+b1) ... Removing git-man (1:2.43.0-1) ... Removing gnupg-l10n (2.2.40-3) ... Removing gnupg-utils (2.2.40-3) ... Removing gpg-wks-server (2.2.40-3) ... Removing gpg-wks-client (2.2.40-3) ... Removing gpg (2.2.40-3) ... Removing gpg-agent (2.2.40-3) ... Removing gpgsm (2.2.40-3) ... Removing llvm-14-dev (1:14.0.6-20) ... Removing libxml2-dev:amd64 (2.9.14+dfsg-1.3+b3) ... Removing libicu-dev:amd64 (72.1-4+b1) ... Removing icu-devtools (72.1-4+b1) ... Removing isympy3 (1.12-7) ... Removing isympy-common (1.12-7) ... Removing javascript-common (11+nmu1) ... Removing kma (1.4.14-2) ... Removing krb5-locales (1.20.1-6) ... Removing less (643-1) ... Removing python3-tables (3.9.2-2) ... Removing python3-tables-lib (3.9.2-2) ... Removing libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Removing libsz2:amd64 (1.1.3-1) ... Removing libaec0:amd64 (1.1.3-1) ... Removing libalgorithm-merge-perl (0.08-5) ... Removing libalgorithm-diff-xs-perl:amd64 (0.04-8+b3) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing pinentry-curses (1.2.1-3+b2) ... Removing python3-numba (0.59.0+dfsg-2) ... Removing python3-pandas (2.1.4+dfsg-8) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... Removing python3-numexpr (2.10.0-2) ... Removing python3-bottleneck (1.3.5+ds1-3+b1) ... Removing libblosc1:amd64 (1.21.5+ds-1+b1) ... Removing libblosc2-2t64:amd64 (2.13.1+ds-3) ... Removing xfonts-utils (1:7.7+6) ... Removing libraqm0:amd64 (0.10.1-1+b1) ... Removing python3-llvmlite (0.42.0-1+b1) ... Removing llvm-14 (1:14.0.6-20) ... Removing libcurl4t64:amd64 (8.7.1-5) ... Removing xauth (1:1.1.2-1) ... Removing libxss1:amd64 (1:1.2.3-1+b1) ... Removing libxcb-shm0:amd64 (1.17.0-1) ... Removing llvm-14-tools (1:14.0.6-20) ... Removing python3-dev (3.11.8-1) ... Removing python3.11-dev (3.11.9-1) ... Removing libpython3-dev:amd64 (3.11.8-1) ... Removing libpython3.11-dev:amd64 (3.11.9-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Removing libncurses-dev:amd64 (6.4+20240414-1) ... Removing libexpat1-dev:amd64 (2.6.2-1) ... Removing libc6-dev:amd64 (2.38-7) ... Removing libc-dev-bin (2.38-7) ... Removing libfido2-1:amd64 (1.14.0-1+b2) ... Removing libcbor0.10:amd64 (0.10.2-1.2) ... Removing libclang-cpp14t64 (1:14.0.6-20) ... Removing libcrypt-dev:amd64 (1:4.4.36-4) ... Removing libcurl3t64-gnutls:amd64 (8.7.1-5) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.20-1) ... Removing libdpkg-perl (1.22.6) ... Removing liberror-perl (0.17029-2) ... Removing python3-yaml (6.0.1-2) ... Removing python3-distutils (3.12.3-1) ... Removing python3-wheel (0.43.0-1) ... Removing python3-babel (2.14.0-1) ... Removing libpython3.11t64:amd64 (3.11.9-1) ... Removing libfakeroot:amd64 (1.34-1) ... Removing libffi-dev:amd64 (3.4.6-1) ... Removing libfile-fcntllock-perl (0.22-4+b3) ... Removing libfontenc1:amd64 (1:1.1.8-1) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing ncbi-blast+-legacy (2.12.0+ds-4) ... Removing ncbi-blast+ (2.12.0+ds-4+b1) ... Removing perl (5.38.2-4) ... Removing libperl5.38t64:amd64 (5.38.2-4) ... Removing libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Removing libgdbm6t64:amd64 (1.23-5.1+b1) ... Removing shared-mime-info (2.4-4) ... Removing libharfbuzz0b:amd64 (8.3.0-2+b1) ... Removing libglib2.0-0t64:amd64 (2.80.0-9) ... Removing libglib2.0-data (2.80.0-9) ... Removing libimagequant0:amd64 (2.18.0-1+b1) ... Removing libgpm2:amd64 (1.20.7-11) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Removing libhwloc-plugins:amd64 (2.10.0-1+b1) ... Removing libtbb12:amd64 (2021.11.0-2) ... Removing libtbbbind-2-5:amd64 (2021.11.0-2) ... Removing libhwloc15:amd64 (2.10.0-1+b1) ... Removing python3-openpyxl (3.1.2+dfsg-6) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3) ... Removing libjs-sphinxdoc (7.2.6-6) ... Removing python-odf-doc (1.4.2-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libkrb5-3:amd64 (1.20.1-6+b1) ... Removing libk5crypto3:amd64 (1.20.1-6+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-6+b1) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing libldap-common (2.5.17+dfsg-1) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing liblmdb0:amd64 (0.9.31-1+b1) ... Removing liblocale-gettext-perl (1.07-7) ... Removing liblzo2-2:amd64 (2.10-2+b1) ... Removing libmbedtls14t64:amd64 (2.28.8-1) ... Removing libmbedx509-1t64:amd64 (2.28.8-1) ... Removing libmbedcrypto7t64:amd64 (2.28.8-1) ... Removing libncurses6:amd64 (6.4+20240414-1) ... Removing libnghttp2-14:amd64 (1.61.0-1+b1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b3) ... Removing libpciaccess0:amd64 (0.17-3+b1) ... Removing libpfm4:amd64 (4.13.0+git32-g0d4ed0e-1) ... Removing libpipeline1:amd64 (1.5.7-2) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing libqhull-r8.0:amd64 (2020.2-6+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg1-6) ... Removing libwebpmux3:amd64 (1.4.0-0.1) ... Removing libwebpdemux2:amd64 (1.4.0-0.1) ... Removing libwebp7:amd64 (1.4.0-0.1) ... Removing libsharpyuv0:amd64 (1.4.0-0.1) ... Removing libsnappy1v5:amd64 (1.2.0-2) ... Removing libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Removing libtbbmalloc2:amd64 (2021.11.0-2) ... Removing libtcl8.6:amd64 (8.6.14+dfsg-1) ... Removing libxcb-render0:amd64 (1.17.0-1) ... Removing libxnvctrl0:amd64 (535.171.04-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxmuu1:amd64 (2:1.1.3-3+b2) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b1) ... Removing libyaml-0-2:amd64 (0.2.5-1+b1) ... Removing libz3-dev:amd64 (4.8.12-3.1+b2) ... Removing llvm-14-runtime (1:14.0.6-20) ... Removing linux-libc-dev (6.7.12-1) ... Removing llvm-14-linker-tools (1:14.0.6-20) ... Removing make (4.3-4.1) ... Removing manpages-dev (6.7-2) ... Removing manpages (6.7-2) ... Removing ncbi-data (6.1.20170106+dfsg2-2) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Removing openssl (3.2.1-3) ... Removing patch (2.7.6-7) ... Removing perl-modules-5.38 (5.38.2-4) ... Removing publicsuffix (20231001.0357-0.1) ... Removing python-babel-localedata (2.14.0-1) ... Removing python-biopython-doc (1.83+dfsg1-2) ... Removing python-odf-tools (1.4.2-2) ... Removing python-tables-data (3.9.2-2) ... Removing python3-bs4 (4.12.3-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-contourpy (1.0.7-3) ... Removing python3-cpuinfo (9.0.0+git20221119-1) ... Removing python3-cssselect (1.2.0-4) ... Removing python3-cycler (0.12.1-1) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-odf (1.4.2-2) ... Removing python3-defusedxml (0.7.1-2) ... Removing python3-et-xmlfile (1.0.1-2.1) ... Removing python3-freetype (2.4.0-1) ... Removing python3-gitdb (4.0.11-1) ... Removing python3-html5lib (1.1-6) ... Removing python3-jinja2 (3.1.3-1) ... Removing python3-kiwisolver (1.4.5-1) ... Removing python3-lib2to3 (3.12.3-1) ... Removing python3-markupsafe (2.1.5-1) ... Removing python3-olefile (0.46-3) ... Removing python3-packaging (24.0-1) ... Removing python3-pygments (2.17.2+dfsg-1) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-smmap (6.0.0-1) ... Removing python3-soupsieve (2.5-1) ... Removing python3-tabulate (0.8.10-1) ... Removing python3-webencodings (0.5.1-5) ... Removing resfinder-db (0.0+git20220524.fa32d9a-1) ... Removing resfinder-example (4.4.2-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.18-1) ... Removing xz-utils (5.6.1+really5.4.5-1) ... Removing dirmngr (2.2.40-3) ... Removing adduser (3.137) ... Removing gcc-13 (13.2.0-24) ... Removing binutils (2.42-4) ... Removing gcc-13-x86-64-linux-gnu (13.2.0-24) ... Removing binutils-x86-64-linux-gnu (2.42-4) ... Removing libgprofng0:amd64 (2.42-4) ... Removing libctf0:amd64 (2.42-4) ... Removing libbinutils:amd64 (2.42-4) ... Removing binutils-common:amd64 (2.42-4) ... Removing cpp-13-x86-64-linux-gnu (13.2.0-24) ... Removing libgcc-13-dev:amd64 (13.2.0-24) ... Removing gcc-13-base:amd64 (13.2.0-24) ... Removing gpgconf (2.2.40-3) ... Removing libasan8:amd64 (14-20240429-1) ... Removing libassuan0:amd64 (2.5.6-1+b1) ... Removing libatomic1:amd64 (14-20240429-1) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libx11-6:amd64 (2:1.8.7-1+b1) ... Removing libxcb1:amd64 (1.17.0-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3+b1) ... Removing libllvm14t64:amd64 (1:14.0.6-20) ... Removing libedit2:amd64 (3.1-20230828-1+b1) ... Removing libbsd0:amd64 (0.12.2-1) ... Removing libcc1-0:amd64 (14-20240429-1) ... Removing libctf-nobfd0:amd64 (2.42-4) ... Removing libgomp1:amd64 (14-20240429-1) ... Removing libhwasan0:amd64 (14-20240429-1) ... Removing libisl23:amd64 (0.26-3+b2) ... Removing libitm1:amd64 (14-20240429-1) ... Removing libjansson4:amd64 (2.14-2+b2) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libksba8:amd64 (1.6.6-1) ... Removing libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Removing liblsan0:amd64 (14-20240429-1) ... Removing libmpc3:amd64 (1.3.1-1+b2) ... Removing libmpfr6:amd64 (4.2.1-1+b1) ... Removing libnpth0t64:amd64 (1.6-3.1) ... Removing libpng16-16t64:amd64 (1.6.43-5) ... Removing libquadmath0:amd64 (14-20240429-1) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Removing libsframe1:amd64 (2.42-4) ... Removing libtsan2:amd64 (14-20240429-1) ... Removing libubsan1:amd64 (14-20240429-1) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1+b1) ... Removing libz3-4:amd64 (4.8.12-3.1+b2) ... Removing python3-fonttools (4.46.0-1) ... Removing python3-scipy (1.11.4-6) ... Removing python3-numpy (1:1.26.4+ds-8) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing python3-unicodedata2 (15.1.0+ds-1+b1) ... Removing libgfortran5:amd64 (14-20240429-1) ... Removing python3-lxml:amd64 (5.2.1-1) ... Removing libxslt1.1:amd64 (1.1.35-1+b1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing python3-fs (2.4.16-4) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-brotli (1.1.0-2+b3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-lz4 (4.0.2+dfsg-1+b3) ... Removing python3-sympy (1.12-7) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-six (1.16.0-6) ... Removing python3-tz (2024.1-2) ... Removing unicode-data (15.1.0-1) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing python3-attr (23.2.0-2) ... Removing python3 (3.11.8-1) ... Removing python3.11 (3.11.9-1) ... Removing python3-minimal (3.11.8-1) ... Removing python3.11-minimal (3.11.9-1) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3-stdlib:amd64 (3.11.8-1) ... Removing libpython3.11-stdlib:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240414-1) ... Removing libpython3.11-minimal:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.45.3-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Processing triggers for libc-bin (2.38-7) ... 4m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'apt-get', 'remove', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-13', 'cpp-13-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-13', 'g++-13-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-13', 'gcc-13-base:amd64', 'gcc-13-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'kma', 'krb5-locales', 'less', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libasan8:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-2t64:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcbor0.10:amd64', 'libcc1-0:amd64', 'libclang-cpp14t64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfido2-1:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-13-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm14t64:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnpth0t64:amd64', 'libopenjp2-7:amd64', 'libpciaccess0:amd64', 'libperl5.38t64:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev', 'llvm-14', 'llvm-14-dev', 'llvm-14-linker-tools', 'llvm-14-runtime', 'llvm-14-tools', 'make', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssh-client', 'openssl', 'patch', 'perl', 'perl-modules-5.38', 'pinentry-curses', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-cgecore', 'python3-cgelib', 'python3-chardet', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-git', 'python3-gitdb', 'python3-html5lib', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pygments', 'python3-pyparsing', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-smmap', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tabulate', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'resfinder', 'resfinder-db', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64', 'resfinder-example'] 4m20.4s INFO: Running scripts post_remove 4m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_remove_exceptions'] 4m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_remove_exceptions'] 4m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg', '--purge', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-13', 'cpp-13-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-13', 'g++-13-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-13', 'gcc-13-base:amd64', 'gcc-13-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'kma', 'krb5-locales', 'less', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libasan8:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-2t64:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcbor0.10:amd64', 'libcc1-0:amd64', 'libclang-cpp14t64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfido2-1:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-13-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm14t64:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnpth0t64:amd64', 'libopenjp2-7:amd64', 'libpciaccess0:amd64', 'libperl5.38t64:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev', 'llvm-14', 'llvm-14-dev', 'llvm-14-linker-tools', 'llvm-14-runtime', 'llvm-14-tools', 'make', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssh-client', 'openssl', 'patch', 'perl', 'perl-modules-5.38', 'pinentry-curses', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-cgecore', 'python3-cgelib', 'python3-chardet', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-git', 'python3-gitdb', 'python3-html5lib', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pygments', 'python3-pyparsing', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-smmap', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tabulate', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'resfinder', 'resfinder-db', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64'] 4m21.7s DUMP: (Reading database ... 5302 files and directories currently installed.) Purging configuration files for adduser (3.137) ... Purging configuration files for binfmt-support (2.2.2-7) ... dpkg: warning: ignoring request to remove binutils which isn't installed Purging configuration files for binutils-common:amd64 (2.42-4) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:13.2.0-7) ... dpkg: warning: ignoring request to remove cpp-13 which isn't installed dpkg: warning: ignoring request to remove cpp-13-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which isn't installed Purging configuration files for dirmngr (2.2.40-3) ... Purging configuration files for dpkg-dev (1.22.6) ... dpkg: warning: ignoring request to remove fakeroot which isn't installed Purging configuration files for fontconfig-config (2.15.0-1.1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which isn't installed Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-13 which isn't installed dpkg: warning: ignoring request to remove g++-13-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-13 which isn't installed dpkg: warning: ignoring request to remove gcc-13-base which isn't installed dpkg: warning: ignoring request to remove gcc-13-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which isn't installed Purging configuration files for git (1:2.43.0-1+b1) ... dpkg: warning: ignoring request to remove git-man which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed dpkg: warning: ignoring request to remove gnupg-l10n which isn't installed dpkg: warning: ignoring request to remove gnupg-utils which isn't installed dpkg: warning: ignoring request to remove gpg which isn't installed Purging configuration files for gpg-agent (2.2.40-3) ... dpkg: warning: ignoring request to remove gpg-wks-client which isn't installed dpkg: warning: ignoring request to remove gpg-wks-server which isn't installed dpkg: warning: ignoring request to remove gpgconf which isn't installed dpkg: warning: ignoring request to remove gpgsm which isn't installed dpkg: warning: ignoring request to remove icu-devtools which isn't installed dpkg: warning: ignoring request to remove isympy-common which isn't installed dpkg: warning: ignoring request to remove isympy3 which isn't installed Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove kma which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove less which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libassuan0 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libblosc2-2t64 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcbor0.10 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libclang-cpp14t64 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-4) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed Purging configuration files for libfakeroot:amd64 (1.34-1) ... dpkg: warning: ignoring request to remove libffi-dev which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-13-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.80.0-9) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1t64 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libicu-dev which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libksba8 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed Purging configuration files for libldap-common (2.5.17+dfsg-1) ... dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm14t64 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblocale-gettext-perl which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzo2-2 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7t64 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14t64 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1t64 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncurses-dev which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnpth0t64 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.38t64 which isn't installed dpkg: warning: ignoring request to remove libpfm4 which isn't installed dpkg: warning: ignoring request to remove libpipeline1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.9-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11t64 which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.28+dfsg1-6) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libstdc++-13-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtbb12 which isn't installed dpkg: warning: ignoring request to remove libtbbbind-2-5 which isn't installed dpkg: warning: ignoring request to remove libtbbmalloc2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxml2-dev which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove libz3-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove llvm-14 which isn't installed dpkg: warning: ignoring request to remove llvm-14-dev which isn't installed dpkg: warning: ignoring request to remove llvm-14-linker-tools which isn't installed dpkg: warning: ignoring request to remove llvm-14-runtime which isn't installed dpkg: warning: ignoring request to remove llvm-14-tools which isn't installed dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-2) ... Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove numba-doc which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openssh-client (1:9.7p1-4) ... Purging configuration files for openssl (3.2.1-3) ... dpkg: warning: ignoring request to remove patch which isn't installed Purging configuration files for perl (5.38.2-4) ... dpkg: warning: ignoring request to remove perl-modules-5.38 which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed Purging configuration files for python-matplotlib-data (3.6.3-2) ... dpkg: warning: ignoring request to remove python-odf-doc which isn't installed dpkg: warning: ignoring request to remove python-odf-tools which isn't installed dpkg: warning: ignoring request to remove python-tables-data which isn't installed Purging configuration files for python3 (3.11.8-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-babel which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-bottleneck which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-cgecore which isn't installed dpkg: warning: ignoring request to remove python3-cgelib which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cpuinfo which isn't installed dpkg: warning: ignoring request to remove python3-cssselect which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-defusedxml which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-et-xmlfile which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-llvmlite which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-numba which isn't installed dpkg: warning: ignoring request to remove python3-numexpr which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-odf which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-openpyxl which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pip which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed Purging configuration files for python3-sympy (1.12-7) ... dpkg: warning: ignoring request to remove python3-tables which isn't installed dpkg: warning: ignoring request to remove python3-tables-lib which isn't installed dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-wheel which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.9-1) ... Purging configuration files for readline-common (8.2-4) ... dpkg: warning: ignoring request to remove resfinder which isn't installed dpkg: warning: ignoring request to remove resfinder-db which isn't installed dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for sgml-base (1.31) ... Purging configuration files for shared-mime-info (2.4-4) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.18-1) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 4m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg', '--purge', 'adduser', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-13', 'cpp-13-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-13', 'g++-13-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-13', 'gcc-13-base:amd64', 'gcc-13-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'kma', 'krb5-locales', 'less', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libasan8:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-2t64:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcbor0.10:amd64', 'libcc1-0:amd64', 'libclang-cpp14t64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfido2-1:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-13-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm14t64:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-1t64:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnpth0t64:amd64', 'libopenjp2-7:amd64', 'libpciaccess0:amd64', 'libperl5.38t64:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev', 'llvm-14', 'llvm-14-dev', 'llvm-14-linker-tools', 'llvm-14-runtime', 'llvm-14-tools', 'make', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssh-client', 'openssl', 'patch', 'perl', 'perl-modules-5.38', 'pinentry-curses', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-cgecore', 'python3-cgelib', 'python3-chardet', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-git', 'python3-gitdb', 'python3-html5lib', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pygments', 'python3-pyparsing', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-smmap', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tabulate', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-webencodings', 'python3-wheel', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'resfinder', 'resfinder-db', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64'] 4m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg', '--purge', 'resfinder-example'] 4m21.7s DUMP: dpkg: warning: ignoring request to remove resfinder-example which isn't installed 4m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg', '--purge', 'resfinder-example'] 4m21.7s INFO: Running scripts post_purge 4m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_purge_exceptions'] 4m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_purge_exceptions'] 4m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg', '--purge', '--pending'] 4m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg', '--purge', '--pending'] 4m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg', '--remove', '--pending'] 4m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'dpkg', '--remove', '--pending'] 4m21.7s INFO: Running scripts post_test 4m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_test_exceptions'] 4m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusz0zcok', 'tmp/scripts/post_test_exceptions'] 4m21.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 4m22.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 4m22.5s ERROR: FAIL: Broken symlinks: /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf 4m22.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/shm'] 4m22.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/shm'] 4m22.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/console'] 4m22.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/console'] 4m22.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/ptmx'] 4m22.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/ptmx'] 4m22.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/pts'] 4m22.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/dev/pts'] 4m22.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/proc'] 4m22.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpusz0zcok/proc'] 4m22.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 4m23.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpusz0zcok'] 4m23.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpusz0zcok 4m23.0s ERROR: piuparts run ends. ret=1 End: 2024-05-06 01:39:46 GMT