Start: 2025-09-26 20:08:23 GMT Package: ruby-bio Version: 2.0.6-1 Installed-Size: 2855 Maintainer: Debian Ruby Team Architecture: all Recommends: ncbi-blast+-legacy, hmmer, mafft, muscle, probcons, sim4, t-coffee Suggests: clustalw, emboss Breaks: ruby-crb-blast (<< 0.6.9-4) Description: Ruby tools for computational molecular biology Homepage: https://bioruby.org/ Description-md5: 9551e5ebe8c49f9d9485b7f15547f082 Section: ruby Priority: optional Filename: pool/main/r/ruby-bio/ruby-bio_2.0.6-1_all.deb Size: 705580 MD5sum: 828bb6ced0347bf22572590ac7cb273f SHA256: 11173dfaa9e46e2e4888606f2e352d1c63c63f5edf863c011dae91ece002230c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt ruby-bio=2.0.6-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt ruby-bio=2.0.6-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-40-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.153-1 (2025-09-20) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpoftgd_0q 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpoftgd_0q 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpoftgd_0q/tmp/scripts/ 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-broken-symlinks to /srv/piuparts.debian.org/tmp/tmpoftgd_0q/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-get', 'update'] 0m2.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [207 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7437 kB] Fetched 17.8 MB in 2s (11.4 MB/s) Reading package lists... 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-get', 'update'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: util-linux-extra The following packages will be upgraded: bsdutils libblkid1 liblastlog2-2 libmount1 libsmartcols1 libuuid1 login mount util-linux 9 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 2534 kB of archives. After this operation, 823 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.2-1 [28.9 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.2-1 [38.1 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.2-1 [93.4 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.2-1 [173 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.2-1 [211 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.2-1 [144 kB] Get:7 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.2-1 [1257 kB] Get:8 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.2-1 [162 kB] Get:9 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.2-1 [105 kB] Get:10 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.41.2-1 [321 kB] Fetched 2534 kB in 0s (14.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41.2-1_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.2-1) over (2.41.1-3) ... Setting up liblastlog2-2:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.2-1_amd64.deb ... Unpacking libuuid1:amd64 (2.41.2-1) over (2.41.1-3) ... Setting up libuuid1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.2-1_amd64.deb ... Unpacking bsdutils (1:2.41.2-1) over (1:2.41.1-3) ... Setting up bsdutils (1:2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.2-1_amd64.deb ... Unpacking libblkid1:amd64 (2.41.2-1) over (2.41.1-3) ... Setting up libblkid1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.2-1_amd64.deb ... Unpacking libmount1:amd64 (2.41.2-1) over (2.41.1-3) ... Setting up libmount1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.2-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.2-1) over (2.41.1-3) ... Setting up libsmartcols1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.2-1_amd64.deb ... Unpacking util-linux (2.41.2-1) over (2.41.1-3) ... Setting up util-linux (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../mount_2.41.2-1_amd64.deb ... Unpacking mount (2.41.2-1) over (2.41.1-3) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-1) over (1:4.16.0-2+really2.41.1-3) ... Selecting previously unselected package util-linux-extra. Preparing to unpack .../util-linux-extra_2.41.2-1_amd64.deb ... Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.41.2-1) ... Setting up mount (2.41.2-1) ... Setting up util-linux-extra (2.41.2-1) ... Setting up login (1:4.16.0-2+really2.41.2-1) ... Processing triggers for libc-bin (2.41-12) ... 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s DUMP: 589e1ff3a0f81cbd4f6e9470b8ac54aa - 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s INFO: Running scripts post_setup 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-get', 'clean'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-get', 'clean'] 0m4.0s DEBUG: Recording chroot state 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-1 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.41.2-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.2-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.3-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 258-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.2-1 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.2-1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.3-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.2-1 install ok installed util-linux-extra util-linux-extra 2.41.2-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'dpkg-divert', '--list'] 0m4.3s DUMP: diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'dpkg-divert', '--list'] 0m4.3s INFO: Running scripts is_testable 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s INFO: apt-cache does not know about any of the requested packages 0m4.3s INFO: Running scripts pre_test 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q'] 0m4.7s DEBUG: No broken symlinks as far as we can find. 0m4.7s INFO: Running scripts pre_install 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q'] 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q'] 0m5.1s DEBUG: No broken symlinks as far as we can find. 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-cache', 'policy'] 0m5.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-cache', 'policy'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-cache', 'policy', 'ruby-bio'] 0m5.6s DUMP: ruby-bio: Installed: (none) Candidate: 2.0.6-1 Version table: 2.0.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-cache', 'policy', 'ruby-bio'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-get', '-y', 'install', 'ruby-bio=2.0.6-1'] 0m15.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser amap-align blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign libargtable2-0 libatomic1 libauthen-sasl-perl libbrotli1 libclass-inspector-perl libclone-perl libconvert-binhex-perl libcrypt-urandom-perl libdata-dump-perl libdivsufsort3 libencode-locale-perl libexpat1 libfcgi-bin libfcgi-perl libfcgi0t64 libffi8 libfile-listing-perl libfont-afm-perl libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgnutls30t64 libgomp1 libgpm2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libio-compress-brotli-perl libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery liblmdb0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmime-tools-perl libmpfr6 libncbi-vdb3 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libp11-kit0 libperl5.40 libproc2-0 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libsoap-lite-perl libtask-weaken-perl libtasn1-6 libtext-charwidth-perl libtext-wrapi18n-perl libtimedate-perl libtry-tiny-perl libunistring5 liburi-perl libuv1t64 libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2-16 libxmlrpc-lite-perl libyaml-0-2 linux-sysctl-defaults lynx lynx-common mafft mailcap med-config media-types menu mummer muscle mustang ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-vdb-data netbase openssl perl perl-modules-5.40 perl-openssl-defaults poa prank probcons procps proda psmisc python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-csv ruby-did-you-mean ruby-net-telnet ruby-ruby2-keywords ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration sensible-utils shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xz-utils zip Suggested packages: liblocale-gettext-perl cron quota blends-doc bzip2-doc clustalx seaview wise gawk-doc hmmer-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl gdbm-l10n low-memory-monitor gnutls-bin gpm libcrypt-ssleay-perl libapache2-mod-perl2 libmime-lite-perl libnet-jabber-perl libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl libxml-sax-expatxs-perl menu-l10n mustang-testdata perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl debhelper blast2 probcons-extra python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binutils binfmt-support readline-doc ri ruby-dev emboss bundler boxshade t-coffee-examples pymol rasmol The following NEW packages will be installed: adduser amap-align blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign libargtable2-0 libatomic1 libauthen-sasl-perl libbrotli1 libclass-inspector-perl libclone-perl libconvert-binhex-perl libcrypt-urandom-perl libdata-dump-perl libdivsufsort3 libencode-locale-perl libexpat1 libfcgi-bin libfcgi-perl libfcgi0t64 libffi8 libfile-listing-perl libfont-afm-perl libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgnutls30t64 libgomp1 libgpm2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libio-compress-brotli-perl libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery liblmdb0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmime-tools-perl libmpfr6 libncbi-vdb3 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libp11-kit0 libperl5.40 libproc2-0 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libsoap-lite-perl libtask-weaken-perl libtasn1-6 libtext-charwidth-perl libtext-wrapi18n-perl libtimedate-perl libtry-tiny-perl libunistring5 liburi-perl libuv1t64 libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2-16 libxmlrpc-lite-perl libyaml-0-2 linux-sysctl-defaults lynx lynx-common mafft mailcap med-config media-types menu mummer muscle mustang ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-vdb-data netbase openssl perl perl-modules-5.40 perl-openssl-defaults poa prank probcons procps proda psmisc python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-bio ruby-csv ruby-did-you-mean ruby-net-telnet ruby-ruby2-keywords ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration sensible-utils shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xz-utils zip 0 upgraded, 162 newly installed, 0 to remove and 0 not upgraded. Need to get 78.2 MB of archives. After this operation, 365 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.2-2 [742 kB] Get:3 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-3 [74.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:5 http://deb.debian.org/debian sid/main amd64 gawk amd64 1:5.3.2-1 [772 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get:8 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get:9 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get:10 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:11 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get:17 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get:18 http://deb.debian.org/debian sid/main amd64 adduser all 3.153 [191 kB] Get:19 http://deb.debian.org/debian sid/main amd64 linux-sysctl-defaults all 4.14 [5756 B] Get:20 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:21 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:22 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:23 http://deb.debian.org/debian sid/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Get:24 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.3-1 [1495 kB] Get:25 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20250419 [162 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:28 http://deb.debian.org/debian sid/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:29 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1 [78.5 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1 [52.8 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Get:33 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-6 [267 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:35 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:36 http://deb.debian.org/debian sid/main amd64 ucf all 3.0052 [43.3 kB] Get:37 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.1-1.1 [663 kB] Get:38 http://deb.debian.org/debian sid/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-2 [132 kB] Get:39 http://deb.debian.org/debian sid/main amd64 menu amd64 2.1.51 [355 kB] Get:40 http://deb.debian.org/debian sid/main amd64 blends-common all 0.7.10 [15.0 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libargtable2-0 amd64 13-4 [18.1 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 15.2.0-4 [140 kB] Get:43 http://deb.debian.org/debian sid/main amd64 clustalo amd64 1.2.4-8 [267 kB] Get:44 http://deb.debian.org/debian sid/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get:45 http://deb.debian.org/debian sid/main amd64 dialign-tx-data all 1.0.2-15 [862 kB] Get:46 http://deb.debian.org/debian sid/main amd64 dialign-tx amd64 1.0.2-15 [87.6 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 15.2.0-4 [9508 B] Get:48 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get:49 http://deb.debian.org/debian sid/main amd64 exonerate amd64 2.4.0-5+b1 [1963 kB] Get:50 http://deb.debian.org/debian sid/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get:51 http://deb.debian.org/debian sid/main amd64 fsa amd64 1.15.9+dfsg-6 [700 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get:53 http://deb.debian.org/debian sid/main amd64 hmmer amd64 3.4+dfsg-2 [1062 kB] Get:54 http://deb.debian.org/debian sid/main amd64 javascript-common all 12+nmu1 [4864 B] Get:55 http://deb.debian.org/debian sid/main amd64 kalign amd64 1:3.4.0-1+b3 [138 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libcrypt-urandom-perl amd64 0.54-1 [15.5 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libauthen-sasl-perl all 2.1900-1 [47.9 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libfcgi0t64 amd64 2.4.5-0.1 [25.4 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libfcgi-bin amd64 2.4.5-0.1 [12.4 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libfcgi-perl amd64 0.82+ds-3+b2 [25.3 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libglib2.0-data all 2.84.4-3 [1286 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libgpm2 amd64 1.20.7-12 [15.0 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:80 http://deb.debian.org/debian sid/main amd64 liburi-perl all 5.30-1 [105 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:83 http://deb.debian.org/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libio-compress-brotli-perl amd64 0.004001-2+b3 [16.9 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libio-sessiondata-perl all 1.03-3 [6316 B] Get:93 http://deb.debian.org/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:94 http://deb.debian.org/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:98 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libwww-perl all 6.78-1 [183 kB] Get:103 http://deb.debian.org/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:105 http://deb.debian.org/debian sid/main amd64 libmailtools-perl all 2.22-1 [88.8 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libmime-tools-perl all 5.515-1 [203 kB] Get:110 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:112 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amd64 3.2.4-1 [105 kB] Get:146 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get:147 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] Get:148 http://deb.debian.org/debian sid/main amd64 ncbi-blast+-legacy all 2.16.0+ds-7 [12.6 kB] Get:149 http://deb.debian.org/debian sid/main amd64 poa amd64 2.0+20060928-10 [53.4 kB] Get:150 http://deb.debian.org/debian sid/main amd64 prank amd64 250331-1 [393 kB] Get:151 http://deb.debian.org/debian sid/main amd64 probcons amd64 1.12-15 [142 kB] Get:152 http://deb.debian.org/debian sid/main amd64 proda amd64 1.0-14 [65.4 kB] Get:153 http://deb.debian.org/debian sid/main amd64 psmisc amd64 23.7-2 [267 kB] Get:154 http://deb.debian.org/debian sid/main amd64 ruby-bio all 2.0.6-1 [706 kB] Get:155 http://deb.debian.org/debian sid/main amd64 ruby-sdbm amd64 1.0.0-5+b7 [15.1 kB] Get:156 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:157 http://deb.debian.org/debian sid/main amd64 sim4 amd64 0.0.20121010-8 [359 kB] Get:158 http://deb.debian.org/debian sid/main amd64 t-coffee amd64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1032 kB] Get:159 http://deb.debian.org/debian sid/main amd64 tm-align amd64 20190822+dfsg-3 [867 kB] Get:160 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-29 [173 kB] Get:161 http://deb.debian.org/debian sid/main amd64 xdg-user-dirs amd64 0.19-1 [40.4 kB] Get:162 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-15 [235 kB] Preconfiguring packages ... Fetched 78.2 MB in 2s (51.8 MB/s) Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5017 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../libmpfr6_4.2.2-2_amd64.deb ... Unpacking libmpfr6:amd64 (4.2.2-2) ... Selecting previously unselected package readline-common. 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Selecting previously unselected package ncbi-blast+. Preparing to unpack .../128-ncbi-blast+_2.16.0+ds-7_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-7) ... Selecting previously unselected package ncbi-blast+-legacy. Preparing to unpack .../129-ncbi-blast+-legacy_2.16.0+ds-7_all.deb ... Unpacking ncbi-blast+-legacy (2.16.0+ds-7) ... Selecting previously unselected package poa. Preparing to unpack .../130-poa_2.0+20060928-10_amd64.deb ... Unpacking poa (2.0+20060928-10) ... Selecting previously unselected package prank. Preparing to unpack .../131-prank_250331-1_amd64.deb ... Unpacking prank (250331-1) ... Selecting previously unselected package probcons. Preparing to unpack .../132-probcons_1.12-15_amd64.deb ... Unpacking probcons (1.12-15) ... Selecting previously unselected package proda. Preparing to unpack .../133-proda_1.0-14_amd64.deb ... Unpacking proda (1.0-14) ... Selecting previously unselected package psmisc. Preparing to unpack .../134-psmisc_23.7-2_amd64.deb ... Unpacking psmisc (23.7-2) ... Selecting previously unselected package ruby-bio. Preparing to unpack .../135-ruby-bio_2.0.6-1_all.deb ... Unpacking ruby-bio (2.0.6-1) ... Selecting previously unselected package ruby-sdbm:amd64. Preparing to unpack .../136-ruby-sdbm_1.0.0-5+b7_amd64.deb ... Unpacking ruby-sdbm:amd64 (1.0.0-5+b7) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../137-shared-mime-info_2.4-5+b3_amd64.deb ... Unpacking shared-mime-info (2.4-5+b3) ... Selecting previously unselected package sim4. Preparing to unpack .../138-sim4_0.0.20121010-8_amd64.deb ... Unpacking sim4 (0.0.20121010-8) ... Selecting previously unselected package t-coffee. Preparing to unpack .../139-t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_amd64.deb ... Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Selecting previously unselected package tm-align. Preparing to unpack .../140-tm-align_20190822+dfsg-3_amd64.deb ... Unpacking tm-align (20190822+dfsg-3) ... Selecting previously unselected package unzip. Preparing to unpack .../141-unzip_6.0-29_amd64.deb ... Unpacking unzip (6.0-29) ... Selecting previously unselected package xdg-user-dirs. Preparing to unpack .../142-xdg-user-dirs_0.19-1_amd64.deb ... Unpacking xdg-user-dirs (0.19-1) ... Selecting previously unselected package zip. Preparing to unpack .../143-zip_3.0-15_amd64.deb ... Unpacking zip (3.0-15) ... Setting up media-types (13.0.0) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up javascript-common (12+nmu1) ... Setting up ncbi-data (6.1.20170106+dfsg2-6) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up ruby-ruby2-keywords (0.0.5-1) ... Setting up fonts-lato (2.015-1) ... Setting up libgpm2:amd64 (1.20.7-12) ... Setting up libgdbm6t64:amd64 (1.26-1) ... Setting up probcons (1.12-15) ... Setting up poa (2.0+20060928-10) ... Setting up libgdbm-compat4t64:amd64 (1.26-1) ... Setting up xdg-user-dirs (0.19-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gawk (1:5.3.2-1) ... Setting up psmisc (23.7-2) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libfcgi0t64:amd64 (2.4.5-0.1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up unzip (6.0-29) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libfcgi-bin (2.4.5-0.1) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up file (1:5.46-5) ... Setting up libgomp1:amd64 (15.2.0-4) ... Setting up muscle (1:5.1.0-1) ... Setting up bzip2 (1.0.8-6) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Setting up zip (3.0-15) ... Setting up kalign (1:3.4.0-1+b3) ... Setting up libglib2.0-data (2.84.4-3) ... Setting up linux-sysctl-defaults (4.14) ... Setting up dialign-tx-data (1.0.2-15) ... Setting up mustang (3.2.4-1) ... Setting up proda (1.0-14) ... Setting up sim4 (0.0.20121010-8) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up xz-utils (5.8.1-1.1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up ruby-csv (3.3.4-1) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libatomic1:amd64 (15.2.0-4) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up lynx-common (2.9.2-1) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-2) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up ruby-webrick (1.9.1-1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up perl-modules-5.40 (5.40.1-6) ... Setting up sensible-utils (0.0.26) ... Setting up dialign-tx (1.0.2-15) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up clustalw (2.1+lgpl-7) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:amd64 (3.6.4-2) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up ruby-did-you-mean (1.6.3-2) ... Setting up menu (2.1.51) ... Setting up libdivsufsort3:amd64 (2.0.1-6+b1) ... Setting up openssl (3.5.3-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up prank (250331-1) ... Setting up libargtable2-0:amd64 (13-4) ... Setting up ruby-bio (2.0.6-1) ... Setting up python3.13 (3.13.7-1) ... Setting up python3 (3.13.7-1) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up clustalo (1.2.4-8) ... Setting up tm-align (20190822+dfsg-3) ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up perl (5.40.1-6) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up libmbedx509-7:amd64 (3.6.4-2) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libio-compress-brotli-perl (0.004001-2+b3) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libio-html-perl (1.004-3) ... Setting up ucf (3.0052) ... Setting up libmbedtls21:amd64 (3.6.4-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up mummer (3.23+dfsg-8) ... Setting up hmmer (3.4+dfsg-2) ... Setting up libfcgi-perl (0.82+ds-3+b2) ... Setting up mailcap (3.75) ... Setting up exonerate (2.4.0-5+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up libio-sessiondata-perl (1.03-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libtask-weaken-perl (1.06-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libfont-afm-perl (1.20-4) ... Setting up mafft (7.525-1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libio-stringy-perl (2.113-2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libconvert-binhex-perl (1.125-3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libcrypt-urandom-perl (0.54-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libnet-http-perl (6.23-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up rubygems-integration (1.19) ... Setting up fsa (1.15.9+dfsg-6) ... Setting up ncbi-blast+ (2.16.0+ds-7) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up lynx (2.9.2-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libio-socket-ssl-perl (2.095-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up ncbi-blast+-legacy (2.16.0+ds-7) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libauthen-sasl-perl (2.1900-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmailtools-perl (2.22-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-daemon-perl (6.16-1) ... Setting up libmime-tools-perl (5.515-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up libwww-perl (6.78-1) ... Setting up ruby-rubygems (3.6.7-2) ... Setting up ruby (1:3.3+b1) ... Setting up rake (13.2.1-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up libxml-sax-expat-perl (0.51-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ruby3.3 (3.3.8-2) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b7) ... Setting up libsoap-lite-perl (1.27-3) ... Setting up libxmlrpc-lite-perl (0.717-5) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for menu (2.1.51) ... Setting up blends-common (0.7.10) ... Setting up med-config (3.9.0) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'apt-get', '-y', 'install', 'ruby-bio=2.0.6-1'] 0m15.3s INFO: Running scripts post_install 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_install_exceptions'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_install_exceptions'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'systemd-tmpfiles', '--cat-config'] 0m15.5s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m15.5s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q', 'systemd-tmpfiles', '--cat-config'] 0m15.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q'] 0m16.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q'] 0m16.7s ERROR: FAIL: Broken symlinks: /usr/share/man/man1/rdbg.1.gz -> rdbg3.3.1.gz (ruby) 0m17.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/shm'] 0m17.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/shm'] 0m17.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/console'] 0m17.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/console'] 0m17.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/ptmx'] 0m17.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/ptmx'] 0m17.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/pts'] 0m17.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/dev/pts'] 0m17.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/proc'] 0m17.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q/proc'] 0m17.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q'] 0m17.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpoftgd_0q'] 0m17.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpoftgd_0q 0m17.6s ERROR: piuparts run ends. ret=1 End: 2025-09-26 20:08:41 GMT