Start: 2024-04-12 20:00:46 GMT Package: seaview Source: seaview (1:5.0.5-2) Version: 1:5.0.5-2+b1 Installed-Size: 1016 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libfltk-images1.3t64, libfltk1.3t64 (>= 1.3.4), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Recommends: clustalo, muscle, phyml Description: Multiplatform interface for sequence alignment and phylogeny Homepage: https://doua.prabi.fr/software/seaview Description-md5: a82e7d5dbc9d5aa2cf6662e48d7aa245 Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::c++, interface::commandline, interface::graphical, interface::x11, network::client, protocol::TODO, role::program, scope::utility, uitoolkit::fltk, use::TODO, use::comparing, use::editing, use::printing, use::viewing, works-with-format::plaintext, works-with::biological-sequence, x11::application Section: science Priority: optional Filename: pool/main/s/seaview/seaview_5.0.5-2+b1_amd64.deb Size: 395604 MD5sum: f2040e94d29a424a2058c8940c5d075c SHA256: 4f2d4f74b55f2ae1790c8cef538cf3b12ef4ad6fe82bb861839f43c3da6794e6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt seaview=1:5.0.5-2+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt seaview=1:5.0.5-2+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpx9s5hnaq 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpx9s5hnaq 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.6s DEBUG: Created policy-rc.d and chmodded it. 0m0.6s DEBUG: Created resolv.conf. 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpx9s5hnaq/tmp/scripts/ 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-broken-symlinks to /srv/piuparts.debian.org/tmp/tmpx9s5hnaq/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', 'update'] 0m5.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9902 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7192 kB] Fetched 17.3 MB in 4s (4419 kB/s) Reading package lists... 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', 'update'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', '-yf', 'dist-upgrade'] 0m7.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3356 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-17 [2753 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-17 [603 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3356 kB in 0s (32.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../libc6_2.37-17_amd64.deb ... Unpacking libc6:amd64 (2.37-17) over (2.37-16) ... Setting up libc6:amd64 (2.37-17) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../libc-bin_2.37-17_amd64.deb ... Unpacking libc-bin (2.37-17) over (2.37-16) ... Setting up libc-bin (2.37-17) ... 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', '-yf', 'dist-upgrade'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.3s DUMP: 63ce67dfa75c7b28e9e167d94fd73b48 - 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.3s INFO: Running scripts post_setup 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_dummy_users'] 0m9.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_dummy_users'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_forbid_home'] 0m9.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_forbid_home'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_minimize'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_minimize'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_zz_backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_setup_zz_backports'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', 'clean'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', 'clean'] 0m9.6s DEBUG: Recording chroot state 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.1s DUMP: install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-5 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-5 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-17 install ok installed libc6:amd64 libc6 2.37-17 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-5 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-5 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-2 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg-divert', '--list'] 0m10.1s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg-divert', '--list'] 0m10.1s INFO: Running scripts is_testable 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/is_testable_uninstallable'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/is_testable_uninstallable'] 0m10.1s INFO: apt-cache does not know about any of the requested packages 0m10.1s INFO: Running scripts pre_test 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_test_exceptions'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_test_exceptions'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_test_root_password'] 0m10.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_test_root_password'] 0m10.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m10.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m10.9s DEBUG: No broken symlinks as far as we can find. 0m10.9s INFO: Running scripts pre_install 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_database-server'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_database-server'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_exceptions'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_exceptions'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_extras'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_extras'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m11.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m11.6s DEBUG: No broken symlinks as far as we can find. 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-cache', 'policy'] 0m12.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-cache', 'policy'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-cache', 'policy', 'seaview'] 0m12.8s DUMP: seaview: Installed: (none) Candidate: 1:5.0.5-2+b1 Version table: 1:5.0.5-2+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-cache', 'policy', 'seaview'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', '-y', 'install', 'seaview=1:5.0.5-2+b1'] 0m27.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser clustalo fontconfig-config fonts-dejavu-core fonts-dejavu-mono ibverbs-providers krb5-locales libamd-comgr2 libamdhip64-5 libargtable2-0 libatomic1 libbrotli1 libbsd0 libcbor0.10 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libfido2-1 libfltk-images1.3t64 libfltk1.3t64 libfontconfig1 libfreetype6 libgdbm-compat4t64 libgdbm6t64 libgomp1 libgssapi-krb5-2 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3t64 libpciaccess0 libperl5.38t64 libpmix2t64 libpng16-16t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxml2 libxmuu1 libxnvctrl0 libxrender1 libz3-4 muscle netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-modules-5.38 phyml xauth Suggested packages: liblocale-gettext-perl cron quota gdbm-l10n krb5-doc krb5-user libhwloc-contrib-plugins pciutils sensible-utils opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl The following NEW packages will be installed: adduser clustalo fontconfig-config fonts-dejavu-core fonts-dejavu-mono ibverbs-providers krb5-locales libamd-comgr2 libamdhip64-5 libargtable2-0 libatomic1 libbrotli1 libbsd0 libcbor0.10 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libfido2-1 libfltk-images1.3t64 libfltk1.3t64 libfontconfig1 libfreetype6 libgdbm-compat4t64 libgdbm6t64 libgomp1 libgssapi-krb5-2 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3t64 libpciaccess0 libperl5.38t64 libpmix2t64 libpng16-16t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxml2 libxmuu1 libxnvctrl0 libxrender1 libz3-4 muscle netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-modules-5.38 phyml seaview xauth 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 87.9 MB of archives. After this operation, 385 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3.2 [2899 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-5.1+b1 [73.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-5.1+b1 [48.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-3.2+b2 [4279 kB] Get:5 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3.2+b2 [236 kB] Get:6 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:8 http://deb.debian.org/debian sid/main amd64 krb5-locales all 1.20.1-6 [63.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libcbor0.10 amd64 0.10.2-1.2 [28.2 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libfido2-1 amd64 1.14.0-1+b2 [77.7 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:16 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:18 http://deb.debian.org/debian sid/main amd64 openssh-client amd64 1:9.7p1-4 [965 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libargtable2-0 amd64 13-2 [17.6 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240330-1 [136 kB] Get:21 http://deb.debian.org/debian sid/main amd64 clustalo amd64 1.2.4-8 [267 kB] Get:22 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:23 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:24 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 50.0-2+b1 [61.7 kB] Get:28 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 50.0-2+b1 [342 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libllvm17t64 amd64 1:17.0.6-9+b2 [23.7 MB] Get:33 http://deb.debian.org/debian sid/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b1 [13.0 MB] Get:34 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get:35 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libhsa-runtime64-1 amd64 5.7.1-2 [504 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libamdhip64-5 amd64 5.7.1-3 [8760 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14-20240330-1 [9216 B] Get:43 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-8.1+b3 [132 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-8.1+b3 [54.1 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:49 http://deb.debian.org/debian sid/main amd64 librdmacm1t64 amd64 50.0-2+b1 [70.2 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libfabric1 amd64 1.17.0-3+b1 [628 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b3 [439 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libfltk1.3t64 amd64 1.3.8-6.1 [553 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libfltk-images1.3t64 amd64 1.3.8-6.1 [49.7 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3 [51.6 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get:70 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libhwloc-plugins amd64 2.10.0-1+b1 [18.0 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libmunge2 amd64 0.5.15-4 [19.8 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libpmix2t64 amd64 5.0.2-3 [652 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libucx0 amd64 1.16.0+ds-5 [1109 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libopenmpi3t64 amd64 4.1.6-9 [2429 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libxmuu1 amd64 2:1.1.3-3+b2 [21.9 kB] Get:78 http://deb.debian.org/debian sid/main amd64 muscle amd64 1:5.1.0-1 [297 kB] Get:79 http://deb.debian.org/debian sid/main amd64 openmpi-common all 4.1.6-9 [169 kB] Get:80 http://deb.debian.org/debian sid/main amd64 openmpi-bin amd64 4.1.6-9 [226 kB] Get:81 http://deb.debian.org/debian sid/main amd64 phyml amd64 3:3.3.20220408-3+b1 [1105 kB] Get:82 http://deb.debian.org/debian sid/main amd64 seaview amd64 1:5.0.5-2+b1 [396 kB] Get:83 http://deb.debian.org/debian sid/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.9 MB in 4s (23.9 MB/s) Selecting previously unselected package perl-modules-5.38. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5204 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.38_5.38.2-3.2_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3.2) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../1-libgdbm6t64_1.23-5.1+b1_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.23-5.1+b1) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../2-libgdbm-compat4t64_1.23-5.1+b1_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Selecting previously unselected package libperl5.38t64:amd64. Preparing to unpack .../3-libperl5.38t64_5.38.2-3.2+b2_amd64.deb ... Unpacking libperl5.38t64:amd64 (5.38.2-3.2+b2) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.38.2-3.2+b2_amd64.deb ... Unpacking perl (5.38.2-3.2+b2) ... Selecting previously unselected package adduser. Preparing to unpack .../5-adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7293 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package krb5-locales. Preparing to unpack .../01-krb5-locales_1.20.1-6_all.deb ... Unpacking krb5-locales (1.20.1-6) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../02-libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) ... 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Unpacking libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Selecting previously unselected package libfltk-images1.3t64:amd64. Preparing to unpack .../60-libfltk-images1.3t64_1.3.8-6.1_amd64.deb ... Unpacking libfltk-images1.3t64:amd64 (1.3.8-6.1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../61-libpciaccess0_0.17-3_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-3) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../62-libxnvctrl0_535.171.04-1_amd64.deb ... Unpacking libxnvctrl0:amd64 (535.171.04-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../63-ocl-icd-libopencl1_2.3.2-1+b1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../64-libhwloc15_2.10.0-1+b1_amd64.deb ... Unpacking libhwloc15:amd64 (2.10.0-1+b1) ... 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Selecting previously unselected package muscle. Preparing to unpack .../71-muscle_1%3a5.1.0-1_amd64.deb ... Unpacking muscle (1:5.1.0-1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../72-openmpi-common_4.1.6-9_all.deb ... Unpacking openmpi-common (4.1.6-9) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../73-openmpi-bin_4.1.6-9_amd64.deb ... Unpacking openmpi-bin (4.1.6-9) ... Selecting previously unselected package phyml. Preparing to unpack .../74-phyml_3%3a3.3.20220408-3+b1_amd64.deb ... Unpacking phyml (3:3.3.20220408-3+b1) ... Selecting previously unselected package seaview. Preparing to unpack .../75-seaview_1%3a5.0.5-2+b1_amd64.deb ... Unpacking seaview (1:5.0.5-2+b1) ... Selecting previously unselected package xauth. Preparing to unpack .../76-xauth_1%3a1.1.2-1_amd64.deb ... Unpacking xauth (1:1.1.2-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpciaccess0:amd64 (0.17-3) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up libgdbm6t64:amd64 (1.23-5.1+b1) ... Setting up libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Setting up libcbor0.10:amd64 (0.10.2-1.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up krb5-locales (1.20.1-6) ... Setting up libgomp1:amd64 (14-20240330-1) ... Setting up muscle (1:5.1.0-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libmunge2:amd64 (0.5.15-4) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up perl-modules-5.38 (5.38.2-3.2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libhwloc15:amd64 (2.10.0-1+b1) ... Setting up libatomic1:amd64 (14-20240330-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libnuma1:amd64 (2.0.18-1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Setting up libnl-3-200:amd64 (3.7.0-0.3) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.6-9) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-8.1+b3) ... Setting up libperl5.38t64:amd64 (5.38.2-3.2+b2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfido2-1:amd64 (1.14.0-1+b2) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up libargtable2-0 (13-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-8.1+b3) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up clustalo (1.2.4-8) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3) ... Setting up perl (5.38.2-3.2+b2) ... Setting up libllvm17t64:amd64 (1:17.0.6-9+b2) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b3) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libdrm2:amd64 (2.4.120-2) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.120-2) ... Setting up libibverbs1:amd64 (50.0-2+b1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up ibverbs-providers:amd64 (50.0-2+b1) ... Setting up openssh-client (1:9.7p1-4) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libxinerama1:amd64 (2:1.1.4-3) ... Setting up xauth (1:1.1.2-1) ... Setting up librdmacm1t64:amd64 (50.0-2+b1) ... Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up libfabric1:amd64 (1.17.0-3+b1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libxcursor1:amd64 (1:1.2.1-1) ... Setting up libhwloc-plugins:amd64 (2.10.0-1+b1) ... Setting up libpmix2t64:amd64 (5.0.2-3) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up libfltk1.3t64:amd64 (1.3.8-6.1) ... Setting up libfltk-images1.3t64:amd64 (1.3.8-6.1) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up seaview (1:5.0.5-2+b1) ... Setting up libucx0:amd64 (1.16.0+ds-5) ... Setting up libopenmpi3t64:amd64 (4.1.6-9) ... Setting up openmpi-bin (4.1.6-9) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20220408-3+b1) ... Processing triggers for libc-bin (2.37-17) ... 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', '-y', 'install', 'seaview=1:5.0.5-2+b1'] 0m27.9s INFO: Running scripts post_install 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_install_exceptions'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_install_exceptions'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m28.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m28.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m29.6s DEBUG: No broken symlinks as far as we can find. 0m29.7s INFO: /bin converted to /usr/bin by /usr merge 0m29.7s INFO: /lib converted to /usr/lib by /usr merge 0m29.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m29.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m29.7s INFO: /sbin converted to /usr/sbin by /usr merge 0m30.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', '-ac', '--ignore-obsolete'] 0m31.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', '-ac', '--ignore-obsolete'] 0m31.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.9s DUMP: 0.15.6 0m31.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.9s INFO: Running adequate version 0.15.6 now. 0m31.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'seaview'] 0m32.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'seaview'] 0m32.1s INFO: Running scripts pre_remove 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.7s DUMP: UNOWNED SYMLINK /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_exceptions'] 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/pre_remove_exceptions'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.9s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-5 install ok installed clustalo clustalo 1.2.4-8 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed ibverbs-providers:amd64 ibverbs-providers 50.0-2+b1 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed krb5-locales krb5-locales 1.20.1-6 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libamd-comgr2:amd64 libamd-comgr2 6.0+git20231212.4510c28+dfsg-3+b1 install ok installed libamdhip64-5 libamdhip64-5 5.7.1-3 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libargtable2-0 libargtable2-0 13-2 install ok installed libatomic1:amd64 libatomic1 14-20240330-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-5 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-17 install ok installed libc6:amd64 libc6 2.37-17 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcbor0.10:amd64 libcbor0.10 0.10.2-1.2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.120-2 install ok installed libdrm-common libdrm-common 2.4.120-2 install ok installed libdrm2:amd64 libdrm2 2.4.120-2 install ok installed libedit2:amd64 libedit2 3.1-20230828-1 install ok installed libelf1t64:amd64 libelf1t64 0.191-1+b1 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.12-stable-8.1+b3 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.12-stable-8.1+b3 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libfabric1:amd64 libfabric1 1.17.0-3+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfido2-1:amd64 libfido2-1 1.14.0-1+b2 install ok installed libfltk-images1.3t64:amd64 libfltk-images1.3t64 1.3.8-6.1 install ok installed libfltk1.3t64:amd64 libfltk1.3t64 1.3.8-6.1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b3 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-5.1+b1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-5.1+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgomp1:amd64 libgomp1 14-20240330-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-6+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libhsa-runtime64-1 libhsa-runtime64-1 5.7.1-2 install ok installed libhsakmt1:amd64 libhsakmt1 5.7.0-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.10.0-1+b1 install ok installed libhwloc15:amd64 libhwloc15 2.10.0-1+b1 install ok installed libibverbs1:amd64 libibverbs1 50.0-2+b1 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-6+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-6+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-6+b1 install ok installed libllvm17t64:amd64 libllvm17t64 1:17.0.6-9+b2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-5 install ok installed libmunge2:amd64 libmunge2 0.5.15-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.3 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.3 install ok installed libnuma1:amd64 libnuma1 2.0.18-1 install ok installed libopenmpi3t64:amd64 libopenmpi3t64 4.1.6-9 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-3.2+b2 install ok installed libpmix2t64:amd64 libpmix2t64 5.0.2-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.43-5 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.3 install ok installed libpsm2-2 libpsm2-2 11.2.185-2 install ok installed librdmacm1t64:amd64 librdmacm1t64 50.0-2+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-5 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libucx0:amd64 libucx0 1.16.0+ds-5 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-5 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.1-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2 install ok installed libxft2:amd64 libxft2 2.3.6-1+b1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.3-3+b2 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1+b2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-5 install ok installed muscle muscle 1:5.1.0-1 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1+b1 install ok installed openmpi-bin openmpi-bin 4.1.6-9 install ok installed openmpi-common openmpi-common 4.1.6-9 install ok installed openssh-client openssh-client 1:9.7p1-4 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3.2+b2 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3.2 install ok installed phyml phyml 3:3.3.20220408-3+b1 install ok installed seaview seaview 1:5.0.5-2+b1 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-2 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-5 install ok installed xauth xauth 1:1.1.2-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', 'remove', 'adduser', 'clustalo', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'ibverbs-providers:amd64', 'krb5-locales', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libargtable2-0', 'libatomic1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcbor0.10:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfltk-images1.3t64:amd64', 'libfltk1.3t64:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm17t64:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3t64:amd64', 'libpciaccess0:amd64', 'libperl5.38t64:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libz3-4:amd64', 'muscle', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.38', 'phyml', 'xauth', 'seaview'] 0m36.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser clustalo fontconfig-config fonts-dejavu-core fonts-dejavu-mono ibverbs-providers krb5-locales libamd-comgr2 libamdhip64-5 libargtable2-0 libatomic1 libbrotli1 libbsd0 libcbor0.10 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libfido2-1 libfltk-images1.3t64 libfltk1.3t64 libfontconfig1 libfreetype6 libgdbm-compat4t64 libgdbm6t64 libgomp1 libgssapi-krb5-2 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3t64 libpciaccess0 libperl5.38t64 libpmix2t64 libpng16-16t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxml2 libxmuu1 libxnvctrl0 libxrender1 libz3-4 muscle netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-modules-5.38 phyml seaview xauth 0 upgraded, 0 newly installed, 83 to remove and 0 not upgraded. After this operation, 385 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8779 files and directories currently installed.) Removing phyml (3:3.3.20220408-3+b1) ... Removing openmpi-bin (4.1.6-9) ... Removing libopenmpi3t64:amd64 (4.1.6-9) ... Removing libucx0:amd64 (1.16.0+ds-5) ... Removing libfabric1:amd64 (1.17.0-3+b1) ... Removing librdmacm1t64:amd64 (50.0-2+b1) ... Removing openssh-client (1:9.7p1-4) ... Removing clustalo (1.2.4-8) ... Removing seaview (1:5.0.5-2+b1) ... Removing libfltk-images1.3t64:amd64 (1.3.8-6.1) ... Removing libfltk1.3t64:amd64 (1.3.8-6.1) ... Removing libxft2:amd64 (2.3.6-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-1.1) ... Removing fontconfig-config (2.15.0-1.1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing ibverbs-providers:amd64 (50.0-2+b1) ... Removing krb5-locales (1.20.1-6) ... Removing libamdhip64-5 (5.7.1-3) ... Removing libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Removing libargtable2-0 (13-2) ... Removing libatomic1:amd64 (14-20240330-1) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b3) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing xauth (1:1.1.2-1) ... Removing libxcursor1:amd64 (1:1.2.1-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libllvm17t64:amd64 (1:17.0.6-9+b2) ... Removing libedit2:amd64 (3.1-20230828-1) ... Removing libfido2-1:amd64 (1.14.0-1+b2) ... Removing libcbor0.10:amd64 (0.10.2-1.2) ... Removing libhsa-runtime64-1 (5.7.1-2) ... Removing libhsakmt1:amd64 (5.7.0-1) ... Removing libdrm-amdgpu1:amd64 (2.4.120-2) ... Removing libdrm2:amd64 (2.4.120-2) ... Removing libdrm-common (2.4.120-2) ... Removing libelf1t64:amd64 (0.191-1+b1) ... Removing libpmix2t64:amd64 (5.0.2-3) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-8.1+b3) ... Removing libevent-core-2.1-7t64:amd64 (2.1.12-stable-8.1+b3) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing perl (5.38.2-3.2+b2) ... Removing libperl5.38t64:amd64 (5.38.2-3.2+b2) ... Removing libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Removing libgdbm6t64:amd64 (1.23-5.1+b1) ... Removing muscle (1:5.1.0-1) ... Removing libgomp1:amd64 (14-20240330-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Removing libhwloc-plugins:amd64 (2.10.0-1+b1) ... Removing libhwloc15:amd64 (2.10.0-1+b1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing libkrb5-3:amd64 (1.20.1-6+b1) ... Removing libk5crypto3:amd64 (1.20.1-6+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-6+b1) ... Removing libmunge2:amd64 (0.5.15-4) ... Removing libpsm2-2 (11.2.185-2) ... Removing libnuma1:amd64 (2.0.18-1) ... Removing libpciaccess0:amd64 (0.17-3) ... Removing libpng16-16t64:amd64 (1.6.43-5) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libxnvctrl0:amd64 (535.171.04-1) ... Removing libxinerama1:amd64 (2:1.1.4-3) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxfixes3:amd64 (1:6.0.0-2) ... Removing libxmuu1:amd64 (2:1.1.3-3+b2) ... Removing libz3-4:amd64 (4.8.12-3.1+b2) ... Removing netbase (6.4) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Removing openmpi-common (4.1.6-9) ... Removing perl-modules-5.38 (5.38.2-3.2) ... Removing libibverbs1:amd64 (50.0-2+b1) ... Removing adduser (3.137) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.12.2-1) ... Removing libnl-route-3-200:amd64 (3.7.0-0.3) ... Removing libnl-3-200:amd64 (3.7.0-0.3) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Processing triggers for libc-bin (2.37-17) ... 0m36.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'apt-get', 'remove', 'adduser', 'clustalo', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'ibverbs-providers:amd64', 'krb5-locales', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libargtable2-0', 'libatomic1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcbor0.10:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfltk-images1.3t64:amd64', 'libfltk1.3t64:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm17t64:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3t64:amd64', 'libpciaccess0:amd64', 'libperl5.38t64:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libz3-4:amd64', 'muscle', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.38', 'phyml', 'xauth', 'seaview'] 0m36.9s INFO: Running scripts post_remove 0m36.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_remove_exceptions'] 0m36.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_remove_exceptions'] 0m36.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg', '--purge', 'adduser', 'clustalo', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'ibverbs-providers:amd64', 'krb5-locales', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libargtable2-0', 'libatomic1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcbor0.10:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfltk-images1.3t64:amd64', 'libfltk1.3t64:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm17t64:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3t64:amd64', 'libpciaccess0:amd64', 'libperl5.38t64:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libz3-4:amd64', 'muscle', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.38', 'phyml', 'xauth'] 0m37.2s DUMP: (Reading database ... 5257 files and directories currently installed.) Purging configuration files for adduser (3.137) ... dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for fontconfig-config (2.15.0-1.1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed Purging configuration files for ibverbs-providers:amd64 (50.0-2+b1) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libamd-comgr2 which isn't installed dpkg: warning: ignoring request to remove libamdhip64-5 which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcbor0.10 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfltk-images1.3t64 which isn't installed dpkg: warning: ignoring request to remove libfltk1.3t64 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... dpkg: warning: ignoring request to remove libhsa-runtime64-1 which isn't installed dpkg: warning: ignoring request to remove libhsakmt1 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libllvm17t64 which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.3) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3t64 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.38t64 which isn't installed dpkg: warning: ignoring request to remove libpmix2t64 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.3) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1t64 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openmpi-bin (4.1.6-9) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:9.7p1-4) ... Purging configuration files for perl (5.38.2-3.2+b2) ... dpkg: warning: ignoring request to remove perl-modules-5.38 which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove xauth which isn't installed 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg', '--purge', 'adduser', 'clustalo', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'ibverbs-providers:amd64', 'krb5-locales', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libargtable2-0', 'libatomic1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcbor0.10:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfltk-images1.3t64:amd64', 'libfltk1.3t64:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm17t64:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3t64:amd64', 'libpciaccess0:amd64', 'libperl5.38t64:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libz3-4:amd64', 'muscle', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.38', 'phyml', 'xauth'] 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg', '--purge', 'seaview'] 0m37.2s DUMP: dpkg: warning: ignoring request to remove seaview which isn't installed 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg', '--purge', 'seaview'] 0m37.2s INFO: Running scripts post_purge 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_purge_exceptions'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_purge_exceptions'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg', '--purge', '--pending'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg', '--purge', '--pending'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg', '--remove', '--pending'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'dpkg', '--remove', '--pending'] 0m37.3s INFO: Running scripts post_test 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_test_exceptions'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq', 'tmp/scripts/post_test_exceptions'] 0m37.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m37.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m38.0s ERROR: FAIL: Broken symlinks: /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 0m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/shm'] 0m38.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/shm'] 0m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/console'] 0m38.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/console'] 0m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/ptmx'] 0m38.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/ptmx'] 0m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/pts'] 0m38.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/dev/pts'] 0m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/proc'] 0m38.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq/proc'] 0m38.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m38.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpx9s5hnaq'] 0m38.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpx9s5hnaq 0m38.6s ERROR: piuparts run ends. ret=1 End: 2024-04-12 20:01:25 GMT