Start: 2025-04-19 08:36:31 GMT Package: srst2 Version: 0.2.0-13 Installed-Size: 265 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, bowtie2, cd-hit, samtools, python3-scipy, python3-biopython Recommends: python3-rpy2 Description: Short Read Sequence Typing for Bacterial Pathogens Homepage: https://katholt.github.io/srst2/ Description-md5: 0b05e0f1dc4b9a9dedc867def03c95b1 Section: science Priority: optional Filename: pool/main/s/srst2/srst2_0.2.0-13_amd64.deb Size: 61288 MD5sum: cecf67e018d45cd5e6ecee791c9aae36 SHA256: 37141e9f8eb509d0172e3236ad3dfeefee01641fed82a7ba985c99045ce1cca9 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt srst2=0.2.0-13 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt srst2=0.2.0-13 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmphmu2issw 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmphmu2issw 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphmu2issw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphmu2issw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphmu2issw/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphmu2issw/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmphmu2issw/tmp/scripts/ 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-broken-symlinks to /srv/piuparts.debian.org/tmp/tmphmu2issw/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-get', 'update'] 0m2.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7419 kB] Fetched 17.8 MB in 1s (12.6 MB/s) Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.7s DUMP: ccc03aa99d57777734ec454660fac1a9 - 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.7s INFO: Running scripts post_setup 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_dummy_users'] 0m3.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_dummy_users'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_zz_backports'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_setup_zz_backports'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-get', 'clean'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-get', 'clean'] 0m3.1s DEBUG: Recording chroot state 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DUMP: install ok installed apt apt 3.0.0 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2 install ok installed bsdutils bsdutils 1:2.41-4 install ok installed coreutils coreutils 9.7-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.22 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-7 install ok installed libc6:amd64 libc6 2.41-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-6 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-4 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-3 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libuuid1:amd64 libuuid1 2.41-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-4 install ok installed login.defs login.defs 1:4.17.4-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-4 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-1 install ok installed perl-base perl-base 5.40.1-3 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'dpkg-divert', '--list'] 0m3.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'dpkg-divert', '--list'] 0m3.4s INFO: Running scripts is_testable 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/is_testable_uninstallable'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/is_testable_uninstallable'] 0m3.4s INFO: apt-cache does not know about any of the requested packages 0m3.4s INFO: Running scripts pre_test 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_test_exceptions'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_test_exceptions'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_test_root_password'] 0m3.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_test_root_password'] 0m3.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphmu2issw'] 0m3.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphmu2issw'] 0m3.8s DEBUG: No broken symlinks as far as we can find. 0m3.8s INFO: Running scripts pre_install 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_database-server'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_database-server'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_exceptions'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_extras'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_extras'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphmu2issw'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphmu2issw'] 0m4.2s DEBUG: No broken symlinks as far as we can find. 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-cache', 'policy'] 0m4.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-cache', 'policy'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-cache', 'policy', 'srst2'] 0m4.7s DUMP: srst2: Installed: (none) Candidate: 0.2.0-13 Version table: 0.2.0-13 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-cache', 'policy', 'srst2'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-get', '-y', 'install', 'srst2=0.2.0-13'] 0m50.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: adduser binutils binutils-common binutils-x86-64-linux-gnu bowtie2 build-essential bzip2 bzip2-doc ca-certificates cd-hit cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools javascript-common krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan8 libatomic1 libauthen-sasl-perl libbinutils libblas-dev libblas3 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libclone-perl libcom-err2 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdbus-1-3 libdeflate-dev libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libencode-locale-perl libexpat1 libfakeroot libffi8 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libgles2 libglib2.0-0t64 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libice6 libicu-dev libicu76 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.40 libpixman-1-0 libpkgconf3 libpng-dev libpng-tools libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libraqm0 libreadline-dev libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe1 libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libunistring5 liburi-perl libuv1t64 libvulkan1 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libz3-4 libzstd-dev linux-libc-dev linux-sysctl-defaults luit make manpages manpages-dev media-types mesa-libgallium mesa-vulkan-drivers ncbi-blast+ ncbi-data netbase openssl patch perl perl-modules-5.40 perl-openssl-defaults pkgconf pkgconf-bin procps psmisc publicsuffix python-babel-localedata python-biopython-doc python3 python3-babel python3-biopython python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-decorator python3-freetype python3-idna python3-jinja2 python3-markupsafe python3-minimal python3-numpy python3-numpy-dev python3-olefile python3-packaging python3-pil python3-platformdirs python3-pooch python3-reportlab python3-requests python3-rlpycairo python3-rpy2 python3-scipy python3-tqdm python3-tzlocal python3-urllib3 python3-yaml python3.13 python3.13-minimal r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rpcsvc-proto samtools sensible-utils sgml-base shared-mime-info sq ucf unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev zutty Suggested packages: cron quota binutils-doc gprofng-gui binutils-gold bowtie2-examples cpp-doc gcc-14-locales cpp-14-doc default-dbus-session-bus | dbus-session-bus debian-keyring fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-14-multilib gcc-14-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu gfortran-multilib gfortran-doc gfortran-14-multilib gfortran-14-doc libcoarrays-dev apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl liblapack-doc libc-devtools glibc-doc git bzr gdbm-l10n low-memory-monitor gnutls-bin gpm krb5-doc krb5-user icu-doc liblcms2-utils libcrypt-ssleay-perl liblzma-doc ncurses-doc pciutils readline-doc libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libstdc++-14-doc tcl8.6 tk8.6 libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl debhelper python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-igraph raxml t-coffee wise python-charset-normalizer-doc python-jinja2-doc python-numpy-doc python3-dev python3-pytest python-pil-doc python3-paramiko pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-rpy-docs python-scipy-doc python3-brotli python3.13-venv python3.13-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo mozilla | www-browser cwltool sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core The following NEW packages will be installed: adduser binutils binutils-common binutils-x86-64-linux-gnu bowtie2 build-essential bzip2 bzip2-doc ca-certificates cd-hit cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools javascript-common krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan8 libatomic1 libauthen-sasl-perl libbinutils libblas-dev libblas3 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libclone-perl libcom-err2 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdbus-1-3 libdeflate-dev libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libencode-locale-perl libexpat1 libfakeroot libffi8 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libgles2 libglib2.0-0t64 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libice6 libicu-dev libicu76 libidn2-0 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.40 libpixman-1-0 libpkgconf3 libpng-dev libpng-tools libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libraqm0 libreadline-dev libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe1 libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 libunistring5 liburi-perl libuv1t64 libvulkan1 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libz3-4 libzstd-dev linux-libc-dev linux-sysctl-defaults luit make manpages manpages-dev media-types mesa-libgallium mesa-vulkan-drivers ncbi-blast+ ncbi-data netbase openssl patch perl perl-modules-5.40 perl-openssl-defaults pkgconf pkgconf-bin procps psmisc publicsuffix python-babel-localedata python-biopython-doc python3 python3-babel python3-biopython python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-decorator python3-freetype python3-idna python3-jinja2 python3-markupsafe python3-minimal python3-numpy python3-numpy-dev python3-olefile python3-packaging python3-pil python3-platformdirs python3-pooch python3-reportlab python3-requests python3-rlpycairo python3-rpy2 python3-scipy python3-tqdm python3-tzlocal python3-urllib3 python3-yaml python3.13 python3.13-minimal r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rpcsvc-proto samtools sensible-utils sgml-base shared-mime-info sq srst2 ucf unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev zutty 0 upgraded, 390 newly installed, 0 to remove and 0 not upgraded. Need to get 376 MB of archives. After this operation, 1381 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get:2 http://deb.debian.org/debian sid/main amd64 dbus-bin amd64 1.16.2-2 [80.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbus-session-bus-common all 1.16.2-2 [52.3 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libapparmor1 amd64 4.1.0-1 [43.7 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get:6 http://deb.debian.org/debian sid/main amd64 dbus-daemon amd64 1.16.2-2 [159 kB] Get:7 http://deb.debian.org/debian sid/main amd64 adduser all 3.150 [187 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbus-system-bus-common all 1.16.2-2 [53.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 dbus amd64 1.16.2-2 [71.6 kB] Get:10 http://deb.debian.org/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.3-2 [861 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.3-2 [2212 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.3-1 [27.2 kB] Get:14 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:15 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:18 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.3-2 [1953 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.3-2 [751 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.3-1 [10.2 kB] Get:23 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.3-1 [28.2 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:27 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:28 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:29 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:30 http://deb.debian.org/debian sid/main amd64 linux-sysctl-defaults all 4.11 [5244 B] Get:31 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get:32 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get:33 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:34 http://deb.debian.org/debian sid/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Get:35 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.0-1 [1491 kB] Get:36 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB] Get:37 http://deb.debian.org/debian sid/main amd64 krb5-locales all 1.21.3-5 [101 kB] Get:38 http://deb.debian.org/debian sid/main amd64 manpages all 6.9.1-1 [1393 kB] Get:39 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-3 [3021 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-3 [4320 kB] Get:43 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-3 [267 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:45 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:46 http://deb.debian.org/debian sid/main amd64 ucf all 3.0051 [42.8 kB] Get:47 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.1-1 [660 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libsframe1 amd64 2.44-3 [78.4 kB] Get:49 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.44-3 [2509 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.44-3 [534 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.44-3 [808 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.44-3 [156 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.44-3 [88.6 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:55 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3 [1014 kB] Get:56 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.44-3 [265 kB] Get:57 http://deb.debian.org/debian sid/main amd64 bowtie2 amd64 2.5.4-1+b2 [1505 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-7 [57.3 kB] Get:59 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.22-1 [2542 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:61 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-7 [1992 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.27-1 [659 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.2-1 [729 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Get:66 http://deb.debian.org/debian sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19 [11.0 MB] Get:67 http://deb.debian.org/debian sid/main amd64 cpp-14 amd64 14.2.0-19 [1280 B] Get:68 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Get:69 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Get:70 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 14.2.0-19 [42.8 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:74 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Get:75 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:81 http://deb.debian.org/debian sid/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19 [21.4 MB] Get:82 http://deb.debian.org/debian sid/main amd64 gcc-14 amd64 14.2.0-19 [540 kB] Get:83 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Get:84 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Get:85 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:86 http://deb.debian.org/debian sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19 [12.1 MB] Get:87 http://deb.debian.org/debian sid/main amd64 g++-14 amd64 14.2.0-19 [22.5 kB] Get:88 http://deb.debian.org/debian sid/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:89 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Get:90 http://deb.debian.org/debian sid/main amd64 make amd64 4.4.1-2 [463 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libdpkg-perl all 1.22.18 [649 kB] Get:92 http://deb.debian.org/debian sid/main amd64 patch amd64 2.8-1 [134 kB] Get:93 http://deb.debian.org/debian sid/main amd64 dpkg-dev all 1.22.18 [1338 kB] Get:94 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.12 [4624 B] Get:95 http://deb.debian.org/debian sid/main amd64 bzip2-doc all 1.0.8-6 [505 kB] Get:96 http://deb.debian.org/debian sid/main amd64 cd-hit amd64 4.8.1-4 [522 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libfakeroot amd64 1.37.1.1-1 [29.6 kB] Get:98 http://deb.debian.org/debian sid/main amd64 fakeroot amd64 1.37.1.1-1 [76.0 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:102 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:103 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:105 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+24 [217 kB] Get:106 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:107 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:108 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:109 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:111 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB] Get:112 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libgfortran-14-dev amd64 14.2.0-19 [880 kB] Get:114 http://deb.debian.org/debian sid/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19 [11.7 MB] Get:115 http://deb.debian.org/debian sid/main amd64 gfortran-14 amd64 14.2.0-19 [14.5 kB] Get:116 http://deb.debian.org/debian sid/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get:117 http://deb.debian.org/debian sid/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get:118 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get:119 http://deb.debian.org/debian sid/main amd64 icu-devtools amd64 76.1-3 [215 kB] Get:120 http://deb.debian.org/debian sid/main amd64 javascript-common all 12 [5236 B] Get:121 http://deb.debian.org/debian sid/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libalgorithm-diff-xs-perl amd64 0.04-9 [11.1 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libalgorithm-merge-perl all 0.08-5 [11.8 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libauthen-sasl-perl all 2.1700-1 [44.8 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libblas-dev amd64 3.12.1-2 [170 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:148 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:158 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.13.0-2 [374 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.13.0-2 [381 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.124-2 [8288 B] Get:167 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.124-2 [39.0 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.124-2 [22.6 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libdrm-intel1 amd64 2.4.124-2 [64.1 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libwayland-server0 amd64 1.23.1-3 [34.4 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libllvm19 amd64 1:19.1.7-3 [26.0 MB] Get:177 http://deb.debian.org/debian sid/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libsensors5 amd64 1:3.6.2-2 [37.5 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [247 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libxshmfence1 amd64 1.3.3-1 [10.9 kB] Get:186 http://deb.debian.org/debian sid/main amd64 mesa-libgallium amd64 25.0.3-1 [9624 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libgbm1 amd64 25.0.3-1 [44.2 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libwayland-client0 amd64 1.23.1-3 [26.8 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libegl-mesa0 amd64 25.0.3-1 [128 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:193 http://deb.debian.org/debian sid/main amd64 liburi-perl all 5.30-1 [105 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libfile-desktopentry-perl all 0.22-3 [17.6 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libfile-fcntllock-perl amd64 0.22-4+b4 [34.6 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB] Get:200 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get:201 http://deb.debian.org/debian sid/main amd64 libfile-mimeinfo-perl all 0.35-1 [44.4 kB] Get:202 http://deb.debian.org/debian sid/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libvulkan1 amd64 1.4.309.0-1 [130 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 25.0.3-1 [45.7 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 25.0.3-1 [143 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libgles2 amd64 1.7.0-1+b2 [17.3 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libglib2.0-data all 2.84.1-1 [1284 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libgpm2 amd64 1.20.7-11+b2 [14.4 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:220 http://deb.debian.org/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get:227 http://deb.debian.org/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:230 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libicu-dev amd64 76.1-3 [10.8 MB] Get:232 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:233 http://deb.debian.org/debian sid/main amd64 libio-compress-brotli-perl amd64 0.004001-2+b3 [16.9 kB] Get:234 http://deb.debian.org/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:235 http://deb.debian.org/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:237 http://deb.debian.org/debian sid/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB] Get:238 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB] Get:241 http://deb.debian.org/debian sid/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:243 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:244 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get:245 http://deb.debian.org/debian sid/main amd64 liblapack-dev amd64 3.12.1-2 [4998 kB] Get:246 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:247 http://deb.debian.org/debian sid/main amd64 libldap-common all 2.6.9+dfsg-2 [34.8 kB] Get:248 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:249 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:250 http://deb.debian.org/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:251 http://deb.debian.org/debian sid/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:252 http://deb.debian.org/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:253 http://deb.debian.org/debian sid/main amd64 libwww-perl all 6.78-1 [183 kB] Get:254 http://deb.debian.org/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:255 http://deb.debian.org/debian sid/main amd64 liblzma-dev amd64 5.8.1-1 [348 kB] Get:256 http://deb.debian.org/debian sid/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:257 http://deb.debian.org/debian sid/main amd64 libmailtools-perl all 2.22-1 [88.8 kB] Get:258 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.3-1 [357 kB] Get:259 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.3-1 [149 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.3-1 [236 kB] Get:261 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get:262 http://deb.debian.org/debian sid/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get:263 http://deb.debian.org/debian sid/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get:264 http://deb.debian.org/debian sid/main amd64 libxml-twig-perl all 1:3.52-3 [177 kB] Get:265 http://deb.debian.org/debian sid/main amd64 libnet-dbus-perl amd64 1.2.0-2+b3 [168 kB] Get:266 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get:267 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:269 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB] Get:270 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB] Get:271 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB] Get:272 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:273 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:274 http://deb.debian.org/debian sid/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB] Get:275 http://deb.debian.org/debian sid/main amd64 libpcre2-32-0 amd64 10.45-1 [268 kB] Get:276 http://deb.debian.org/debian sid/main amd64 libpcre2-posix3 amd64 10.45-1 [63.5 kB] Get:277 http://deb.debian.org/debian sid/main amd64 libpcre2-dev amd64 10.45-1 [853 kB] Get:278 http://deb.debian.org/debian sid/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:279 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:280 http://deb.debian.org/debian sid/main amd64 libpng-dev amd64 1.6.47-1.1 [366 kB] Get:281 http://deb.debian.org/debian sid/main amd64 libpng-tools amd64 1.6.47-1.1 [130 kB] Get:282 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:283 http://deb.debian.org/debian sid/main amd64 libreadline-dev amd64 8.2-6 [153 kB] Get:284 http://deb.debian.org/debian sid/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-9 [66.7 kB] Get:285 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:286 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:287 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:288 http://deb.debian.org/debian sid/main amd64 libtext-iconv-perl amd64 1.7-8+b4 [14.4 kB] Get:289 http://deb.debian.org/debian sid/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Get:290 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:291 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:292 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:293 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:294 http://deb.debian.org/debian sid/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [191 kB] Get:295 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:296 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:297 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:298 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get:299 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:300 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:301 http://deb.debian.org/debian sid/main amd64 libx11-protocol-perl all 0.56-9 [120 kB] Get:302 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:303 http://deb.debian.org/debian sid/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get:304 http://deb.debian.org/debian sid/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get:305 http://deb.debian.org/debian sid/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get:306 http://deb.debian.org/debian sid/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get:307 http://deb.debian.org/debian sid/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB] Get:308 http://deb.debian.org/debian sid/main amd64 libxfixes3 amd64 1:6.0.0-2+b4 [20.2 kB] Get:309 http://deb.debian.org/debian sid/main amd64 libxcursor1 amd64 1:1.2.3-1 [39.7 kB] Get:310 http://deb.debian.org/debian sid/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get:311 http://deb.debian.org/debian sid/main amd64 libxinerama1 amd64 2:1.1.4-3+b4 [16.0 kB] Get:312 http://deb.debian.org/debian sid/main amd64 libxkbfile1 amd64 1:1.1.0-1+b4 [76.5 kB] Get:313 http://deb.debian.org/debian sid/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get:314 http://deb.debian.org/debian sid/main amd64 libxmuu1 amd64 2:1.1.3-3+b4 [21.9 kB] Get:315 http://deb.debian.org/debian sid/main amd64 libxrandr2 amd64 2:1.5.4-1+b3 [36.3 kB] Get:316 http://deb.debian.org/debian sid/main amd64 libxtst6 amd64 2:1.2.5-1 [25.8 kB] Get:317 http://deb.debian.org/debian sid/main amd64 libxv1 amd64 2:1.0.11-1.1+b3 [23.4 kB] Get:318 http://deb.debian.org/debian sid/main amd64 libxxf86dga1 amd64 2:1.1.5-1+b3 [20.8 kB] Get:319 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:320 http://deb.debian.org/debian sid/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get:321 http://deb.debian.org/debian sid/main amd64 luit amd64 2.0.20240910-1 [55.1 kB] Get:322 http://deb.debian.org/debian sid/main amd64 manpages-dev all 6.9.1-1 [2122 kB] Get:323 http://deb.debian.org/debian sid/main amd64 mesa-vulkan-drivers amd64 25.0.3-1 [14.2 MB] Get:324 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get:325 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB] Get:326 http://deb.debian.org/debian sid/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:327 http://deb.debian.org/debian sid/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:328 http://deb.debian.org/debian sid/main amd64 psmisc amd64 23.7-2 [267 kB] Get:329 http://deb.debian.org/debian sid/main amd64 publicsuffix all 20250328.1952-0.1 [296 kB] Get:330 http://deb.debian.org/debian sid/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get:331 http://deb.debian.org/debian sid/main amd64 python-biopython-doc all 1.85+dfsg-4 [18.2 MB] Get:332 http://deb.debian.org/debian sid/main amd64 python3-babel all 2.17.0-1 [117 kB] Get:333 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:334 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get:335 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:336 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:337 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:338 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get:339 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:340 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:341 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get:342 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:343 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.17.1-2+b2 [93.6 kB] Get:344 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.1-1+b1 [125 kB] Get:345 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:346 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:347 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get:348 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get:349 http://deb.debian.org/debian sid/main amd64 python3-olefile all 0.47-1 [39.3 kB] Get:350 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.2-3 [55.7 kB] Get:351 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get:352 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.3.0-2 [114 kB] Get:353 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get:354 http://deb.debian.org/debian sid/main amd64 python3-pooch all 1.8.2-1 [58.4 kB] Get:355 http://deb.debian.org/debian sid/main amd64 python3-tzlocal all 5.3.1-1 [24.2 kB] Get:356 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-14 [233 kB] Get:357 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-29 [173 kB] Get:358 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:359 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.5.0-2 [28.6 MB] Get:360 http://deb.debian.org/debian sid/main amd64 python3-rpy2 amd64 3.5.17-2 [213 kB] Get:361 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.15.2-8 [16.3 MB] Get:362 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.67.1-4 [90.8 kB] Get:363 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Get:364 http://deb.debian.org/debian sid/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get:365 http://deb.debian.org/debian sid/main amd64 r-base-dev all 4.5.0-2 [4356 B] Get:366 http://deb.debian.org/debian sid/main amd64 r-cran-boot all 1.3-31-1 [639 kB] Get:367 http://deb.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB] Get:368 http://deb.debian.org/debian sid/main amd64 r-cran-class amd64 7.3-23-1 [89.7 kB] Get:369 http://deb.debian.org/debian sid/main amd64 r-cran-cluster amd64 2.1.8.1-1 [585 kB] Get:370 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:371 http://deb.debian.org/debian sid/main amd64 r-cran-foreign amd64 0.8.90-1 [253 kB] Get:372 http://deb.debian.org/debian sid/main amd64 r-cran-kernsmooth amd64 2.23-26-1 [93.0 kB] Get:373 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB] Get:374 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB] Get:375 http://deb.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.168-1 [2329 kB] Get:376 http://deb.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.9-3-1 [3378 kB] Get:377 http://deb.debian.org/debian sid/main amd64 r-cran-nnet amd64 7.3-20-1 [112 kB] Get:378 http://deb.debian.org/debian sid/main amd64 r-cran-survival amd64 3.8-3-1 [8265 kB] Get:379 http://deb.debian.org/debian sid/main amd64 r-cran-rpart amd64 4.1.24-1 [689 kB] Get:380 http://deb.debian.org/debian sid/main amd64 r-cran-spatial amd64 7.3-18-1 [130 kB] Get:381 http://deb.debian.org/debian sid/main amd64 r-doc-html all 4.5.0-2 [603 kB] Get:382 http://deb.debian.org/debian sid/main amd64 r-recommended all 4.5.0-2 [2572 B] Get:383 http://deb.debian.org/debian sid/main amd64 samtools amd64 1.21-1 [667 kB] Get:384 http://deb.debian.org/debian sid/main amd64 sq amd64 1.3.1-2 [5650 kB] Get:385 http://deb.debian.org/debian sid/main amd64 srst2 amd64 0.2.0-13 [61.3 kB] Get:386 http://deb.debian.org/debian sid/main amd64 x11-utils amd64 7.7+7 [182 kB] Get:387 http://deb.debian.org/debian sid/main amd64 x11-xserver-utils amd64 7.7+11 [163 kB] Get:388 http://deb.debian.org/debian sid/main amd64 xdg-user-dirs amd64 0.18-2 [53.2 kB] Get:389 http://deb.debian.org/debian sid/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get:390 http://deb.debian.org/debian sid/main amd64 zutty amd64 0.16.2.20241020+dfsg1-1 [182 kB] Preconfiguring packages ... Fetched 376 MB in 4s (101 MB/s) Selecting previously unselected package libdbus-1-3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4941 files and directories currently installed.) Preparing to unpack .../0-libdbus-1-3_1.16.2-2_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.16.2-2) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../1-dbus-bin_1.16.2-2_amd64.deb ... Unpacking dbus-bin (1.16.2-2) ... 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Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ... Setting up dbus-session-bus-common (1.16.2-2) ... Setting up libasan8:amd64 (14.2.0-19) ... Setting up procps (2:4.0.4-8) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libopenjp2-7:amd64 (2.5.3-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libicu76:amd64 (76.1-3) ... Setting up libmbedcrypto16:amd64 (3.6.3-1) ... Setting up libxkbfile1:amd64 (1:1.1.0-1+b4) ... Setting up libpaper2:amd64 (2.2.5-0.3+b2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtsan2:amd64 (14.2.0-19) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.44-3) ... Setting up dbus-system-bus-common (1.16.2-2) ... Setting up libisl23:amd64 (0.27-1) ... Setting up libc-dev-bin (2.41-7) ... Setting up openssl (3.5.0-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libdeflate-dev:amd64 (1.23-2) ... Setting up libdrm-common (2.4.124-2) ... Setting up libxcomposite1:amd64 (1:0.4.6-1) ... Setting up readline-common (8.2-6) ... Setting up publicsuffix (20250328.1952-0.1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libcc1-0:amd64 (14.2.0-19) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b4) ... Setting up dbus-bin (1.16.2-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up liblsan0:amd64 (14.2.0-19) ... Setting up libblas-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libitm1:amd64 (14.2.0-19) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libwayland-client0:amd64 (1.23.1-3) ... Setting up libctf0:amd64 (2.44-3) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.7-3) ... Setting up libwayland-server0:amd64 (1.23.1-3) ... Setting up manpages-dev (6.9.1-1) ... Setting up libx11-xcb1:amd64 (2:1.8.12-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libpng-tools (1.6.47-1.1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up dbus-daemon (1.16.2-2) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b4) ... Setting up libperl5.40:amd64 (5.40.1-3) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up perl (5.40.1-3) ... Setting up libglib2.0-0t64:amd64 (2.84.1-1) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.44-3) ... Setting up libmbedx509-7:amd64 (3.6.3-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b4) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libxml-xpathengine-perl (0.14-2) ... Setting up dbus (1.16.2-2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libio-compress-brotli-perl (0.004001-2+b3) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b4) ... Setting up libxv1:amd64 (2:1.0.11-1.1+b3) ... Setting up liblapack-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libio-html-perl (1.004-3) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b3) ... Setting up icu-devtools (76.1-3) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-19) ... Setting up ucf (3.0051) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libdpkg-perl (1.22.18) ... Setting up cpp-14 (14.2.0-19) ... Setting up libmbedtls21:amd64 (3.6.3-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libdrm2:amd64 (2.4.124-2) ... Setting up xauth (1:1.1.2-1.1) ... Setting up python-biopython-doc (1.85+dfsg-4) ... Setting up xml-core (0.19) ... Setting up libc6-dev:amd64 (2.41-7) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libgcc-14-dev:amd64 (14.2.0-19) ... Setting up libstdc++-14-dev:amd64 (14.2.0-19) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.3-2) ... Setting up libicu-dev:amd64 (76.1-3) ... Setting up liburi-perl (5.30-1) ... Setting up libx11-protocol-perl (0.56-9) ... Setting up libpython3-stdlib:amd64 (3.13.3-1) ... Setting up binutils-x86-64-linux-gnu (2.44-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.124-2) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up cd-hit (4.8.1-4) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libgfortran-14-dev:amd64 (14.2.0-19) ... Setting up mesa-vulkan-drivers:amd64 (25.0.3-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up fontconfig (2.15.0-2.3) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libncurses-dev:amd64 (6.5+20250216-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libtie-ixhash-perl (1.23-4) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpcre2-dev:amd64 (10.45-1) ... Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up libfont-afm-perl (1.20-4) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up libfile-fcntllock-perl (0.22-4+b4) ... Setting up python3.13 (3.13.3-2) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libio-stringy-perl (2.113-2) ... Setting up libxtst6:amd64 (2:1.2.5-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libauthen-sasl-perl (2.1700-1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up libxcursor1:amd64 (1:1.2.3-1) ... Setting up libpango-1.0-0:amd64 (1.56.3-1) ... Setting up libdrm-intel1:amd64 (2.4.124-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libxxf86dga1:amd64 (2:1.1.5-1+b3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up python3 (3.13.3-1) ... Setting up binutils (2.44-3) ... Setting up libreadline-dev:amd64 (8.2-6) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3-platformdirs (4.3.7-1) ... Setting up dpkg-dev (1.22.18) ... Setting up bowtie2 (2.5.4-1+b2) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-packaging (24.2-3) ... Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Setting up python3-idna (3.10-1) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up libfile-desktopentry-perl (0.22-3) ... Setting up python3-urllib3 (2.3.0-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up cpp (4:14.2.0-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-19) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ... Setting up python3-tzlocal (5.3.1-1) ... Setting up libalgorithm-diff-xs-perl (0.04-9) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b2) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ... Setting up libalgorithm-merge-perl (0.08-5) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libfile-mimeinfo-perl (0.35-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up mesa-libgallium:amd64 (25.0.3-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up python3-scipy (1.15.2-8) ... Setting up python3-cairo (1.27.0-2) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libcurl4t64:amd64 (8.13.0-2) ... Setting up libgbm1:amd64 (25.0.3-1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-charset-normalizer (3.4.1-1+b1) ... Setting up python3-olefile (0.47-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up python3-tqdm (4.67.1-4) ... Setting up libgl1-mesa-dri:amd64 (25.0.3-1) ... Setting up libpng-dev:amd64 (1.6.47-1.1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3.1) ... Setting up libcurl3t64-gnutls:amd64 (8.13.0-2) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up x11-xserver-utils (7.7+11) ... Setting up gcc-14 (14.2.0-19) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up libegl-mesa0:amd64 (25.0.3-1) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmailtools-perl (2.22-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up r-base-core (4.5.0-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-7-1) ... Setting up r-cran-nlme (3.1.168-1) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-reportlab (4.3.1-1) ... Setting up libhttp-daemon-perl (6.16-1) ... Setting up python3-rpy2 (3.5.17-2) ... Setting up r-cran-cluster (2.1.8.1-1) ... Setting up libegl1:amd64 (1.7.0-1+b2) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up r-cran-nnet (7.3-20-1) ... Setting up g++-14 (14.2.0-19) ... Setting up gfortran-14 (14.2.0-19) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-boot (1.3-31-1) ... Setting up libglx-mesa0:amd64 (25.0.3-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up r-cran-spatial (7.3-18-1) ... Setting up r-cran-mass (7.3-65-1) ... Setting up r-cran-foreign (0.8.90-1) ... Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gcc (4:14.2.0-1) ... Setting up samtools (1.21-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up python3-pooch (1.8.2-1) ... Setting up r-cran-matrix (1.7-3-1) ... Setting up r-cran-kernsmooth (2.23-26-1) ... Setting up zutty (0.16.2.20241020+dfsg1-1) ... update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up r-cran-mgcv (1.9-3-1) ... Setting up g++ (4:14.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up x11-utils (7.7+7) ... Setting up build-essential (12.12) ... Setting up r-cran-class (7.3-23-1) ... Setting up r-cran-survival (3.8-3-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up r-base-dev (4.5.0-2) ... Setting up r-cran-rpart (4.1.24-1) ... Setting up r-recommended (4.5.0-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libnet-dbus-perl (1.2.0-2+b3) ... Processing triggers for libc-bin (2.41-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-4) ... Setting up srst2 (0.2.0-13) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'apt-get', '-y', 'install', 'srst2=0.2.0-13'] 0m50.5s INFO: Running scripts post_install 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_install_exceptions'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_install_exceptions'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'systemd-tmpfiles', '--cat-config'] 0m50.9s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m50.9s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmphmu2issw', 'systemd-tmpfiles', '--cat-config'] 0m50.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphmu2issw'] 0m51.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphmu2issw'] 0m53.6s ERROR: FAIL: Broken symlinks: /usr/share/doc/liblzma-dev/THANKS -> ../liblzma5/THANKS (liblzma-dev:amd64) 0m54.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/shm'] 0m54.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/shm'] 0m54.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/console'] 0m54.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/console'] 0m54.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/ptmx'] 0m54.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/ptmx'] 0m54.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/pts'] 0m54.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/dev/pts'] 0m54.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/proc'] 0m54.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphmu2issw/proc'] 0m54.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphmu2issw'] 0m55.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphmu2issw'] 0m55.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmphmu2issw 0m55.2s ERROR: piuparts run ends. ret=1 End: 2025-04-19 08:37:27 GMT