Start: 2024-01-29 07:41:40 GMT Package: mauve-aligner Version: 2.4.0+4736-6 Installed-Size: 544 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbiojava1.9-java, libcommons-cli-java, libdbus-java, libunixsocket-java, libzeus-jscl-java, java-wrappers, libbiojava-java (>= 1:1.9.5+dfsg-1), progressivemauve Description: multiple genome alignment Homepage: https://darlinglab.org/mauve/ Description-md5: 3a6b6e20614d8331f48ecec8afbd02a9 Section: science Priority: optional Filename: pool/main/m/mauve-aligner/mauve-aligner_2.4.0+4736-6_all.deb Size: 489224 MD5sum: f501782e59dfe8b906a5571b60393c64 SHA256: dc0950efad3a33efbd0d52d6aeda9b854ba0288d4d748306df8c6decac81b2c8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt mauve-aligner=2.4.0+4736-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt mauve-aligner=2.4.0+4736-6 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_mr0mt46 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_mr0mt46 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m2.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/proc'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/proc'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/pts'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/pts'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/ptmx'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/ptmx'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/console'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/console'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/shm'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/shm'] 0m2.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m2.3s DEBUG: Created policy-rc.d and chmodded it. 0m2.3s DEBUG: Created resolv.conf. 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_mr0mt46/tmp/scripts/ 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-broken-symlinks to /srv/piuparts.debian.org/tmp/tmp_mr0mt46/tmp/scripts/ 0m2.3s INFO: Running scripts post_chroot_unpack 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', 'update'] 0m6.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9691 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7130 kB] Fetched 17.0 MB in 3s (5481 kB/s) Reading package lists... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', 'update'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', '-yf', 'dist-upgrade'] 0m8.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-14-base libgcc-s1 libidn2-0 libstdc++6 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 956 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240127-1 [42.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240127-1 [714 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240127-1 [71.7 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-1 [128 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 956 kB in 0s (12.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5223 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14-20240127-1_amd64.deb ... Unpacking gcc-14-base:amd64 (14-20240127-1) over (14-20240126-2) ... Setting up gcc-14-base:amd64 (14-20240127-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5223 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240127-1_amd64.deb ... Unpacking libstdc++6:amd64 (14-20240127-1) over (14-20240126-2) ... Setting up libstdc++6:amd64 (14-20240127-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5223 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240127-1_amd64.deb ... Unpacking libgcc-s1:amd64 (14-20240127-1) over (14-20240126-2) ... Setting up libgcc-s1:amd64 (14-20240127-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5223 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-1) over (2.3.4-1+b2) ... Setting up libidn2-0:amd64 (2.3.7-1) ... Processing triggers for libc-bin (2.37-14) ... 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', '-yf', 'dist-upgrade'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.6s DUMP: 99d43c8d0d7f3633b5f9a7b7c42ef807 - 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.6s INFO: Running scripts post_setup 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_dummy_users'] 0m9.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_dummy_users'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_forbid_home'] 0m9.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_forbid_home'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_minimize'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_minimize'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_zz_backports'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_setup_zz_backports'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', 'clean'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', 'clean'] 0m9.9s DEBUG: Recording chroot state 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.5s DUMP: install ok installed apt apt 2.7.10 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.85 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240127-1 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-14 install ok installed libc6:amd64 libc6 2.37-14 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-1 install ok installed libcap2:amd64 libcap2 1:2.66-4+b2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240127-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.4-2 install ok installed libstdc++6:amd64 libstdc++6 14-20240127-1 install ok installed libsystemd0:amd64 libsystemd0 255.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2023d-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg-divert', '--list'] 0m10.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg-divert', '--list'] 0m10.5s INFO: Running scripts is_testable 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/is_testable_uninstallable'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/is_testable_uninstallable'] 0m10.5s INFO: apt-cache does not know about any of the requested packages 0m10.5s INFO: Running scripts pre_test 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_test_exceptions'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_test_exceptions'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_test_root_password'] 0m10.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_test_root_password'] 0m10.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m10.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m11.3s DEBUG: No broken symlinks as far as we can find. 0m11.3s INFO: Running scripts pre_install 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_database-server'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_database-server'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_exceptions'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_exceptions'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_extras'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_extras'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m11.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m12.1s DEBUG: No broken symlinks as far as we can find. 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-cache', 'policy'] 0m13.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-cache', 'policy'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-cache', 'policy', 'mauve-aligner'] 0m13.2s DUMP: mauve-aligner: Installed: (none) Candidate: 2.4.0+4736-6 Version table: 2.4.0+4736-6 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-cache', 'policy', 'mauve-aligner'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', '-y', 'install', 'mauve-aligner=2.4.0+4736-6'] 0m19.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: java-wrappers libatinject-jsr330-api-java libbiojava-java libbiojava1.9-java libboost-filesystem1.83.0 libboost-iostreams1.83.0 libboost-program-options1.83.0 libcommons-cli-java libcommons-dbcp-java libcommons-pool-java libdbus-java liberror-prone-java libgenome0 libgomp1 libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java libmatthew-debug-java libmems1 libmuscle1 libunixsocket-java libzeus-jscl-java progressivemauve unzip Suggested packages: libatinject-jsr330-api-java-doc libbiojava-java-doc libgeronimo-jta-1.2-spec-java libjsr305-java-doc libmatthew-java-doc zip The following NEW packages will be installed: java-wrappers libatinject-jsr330-api-java libbiojava-java libbiojava1.9-java libboost-filesystem1.83.0 libboost-iostreams1.83.0 libboost-program-options1.83.0 libcommons-cli-java libcommons-dbcp-java libcommons-pool-java libdbus-java liberror-prone-java libgenome0 libgomp1 libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java libmatthew-debug-java libmems1 libmuscle1 libunixsocket-java libzeus-jscl-java mauve-aligner progressivemauve unzip 0 upgraded, 26 newly installed, 0 to remove and 0 not upgraded. Need to get 10.6 MB of archives. After this operation, 25.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:2 http://deb.debian.org/debian sid/main amd64 java-wrappers all 0.4 [8916 B] Get:3 http://deb.debian.org/debian sid/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:4 http://deb.debian.org/debian sid/main amd64 libcommons-pool-java all 1.6-5 [109 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libcommons-dbcp-java all 1.4-8 [157 kB] Get:6 http://deb.debian.org/debian sid/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libjgraph-java all 5.12.4.2+dfsg-7 [207 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libjgrapht0.8-java all 0.8.3-6 [214 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libbiojava1.9-java all 1:1.9.7+dfsg-1 [3154 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libbiojava-java all 1:1.9.7+dfsg-1 [5512 B] Get:13 http://deb.debian.org/debian sid/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-2+b2 [280 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-2+b2 [253 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.83.0 amd64 1.83.0-2+b2 [345 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libmatthew-debug-java all 0.8.1-2 [13.9 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libunixsocket-java amd64 0.8.1-2 [16.2 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libdbus-java all 2.8-11 [141 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgenome0 amd64 1.3.11+svn20110227.4616-6 [122 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240127-1 [136 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libmuscle1 amd64 3.7+4565-7 [252 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libmems1 amd64 1.6.0+4725-9+b2 [672 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libzeus-jscl-java all 1.72-2 [129 kB] Get:25 http://deb.debian.org/debian sid/main amd64 progressivemauve amd64 1.2.0+4713+dfsg-5+b2 [870 kB] Get:26 http://deb.debian.org/debian sid/main amd64 mauve-aligner all 2.4.0+4736-6 [489 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.6 MB in 3s (3275 kB/s) Selecting previously unselected package unzip. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5224 files and directories currently installed.) Preparing to unpack .../00-unzip_6.0-28_amd64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package java-wrappers. Preparing to unpack .../01-java-wrappers_0.4_all.deb ... Unpacking java-wrappers (0.4) ... Selecting previously unselected package libatinject-jsr330-api-java. Preparing to unpack .../02-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libcommons-pool-java. Preparing to unpack .../03-libcommons-pool-java_1.6-5_all.deb ... Unpacking libcommons-pool-java (1.6-5) ... Selecting previously unselected package libcommons-dbcp-java. Preparing to unpack .../04-libcommons-dbcp-java_1.4-8_all.deb ... Unpacking libcommons-dbcp-java (1.4-8) ... Selecting previously unselected package liberror-prone-java. Preparing to unpack .../05-liberror-prone-java_2.18.0-1_all.deb ... Unpacking liberror-prone-java (2.18.0-1) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../06-libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../07-libguava-java_32.0.1-1_all.deb ... Unpacking libguava-java (32.0.1-1) ... Selecting previously unselected package libjgraph-java. Preparing to unpack .../08-libjgraph-java_5.12.4.2+dfsg-7_all.deb ... Unpacking libjgraph-java (5.12.4.2+dfsg-7) ... Selecting previously unselected package libjgrapht0.8-java. Preparing to unpack .../09-libjgrapht0.8-java_0.8.3-6_all.deb ... Unpacking libjgrapht0.8-java (0.8.3-6) ... Selecting previously unselected package libbiojava1.9-java. Preparing to unpack .../10-libbiojava1.9-java_1%3a1.9.7+dfsg-1_all.deb ... Unpacking libbiojava1.9-java (1:1.9.7+dfsg-1) ... Selecting previously unselected package libbiojava-java. Preparing to unpack .../11-libbiojava-java_1%3a1.9.7+dfsg-1_all.deb ... Unpacking libbiojava-java (1:1.9.7+dfsg-1) ... Selecting previously unselected package libboost-filesystem1.83.0:amd64. Preparing to unpack .../12-libboost-filesystem1.83.0_1.83.0-2+b2_amd64.deb ... Unpacking libboost-filesystem1.83.0:amd64 (1.83.0-2+b2) ... Selecting previously unselected package libboost-iostreams1.83.0:amd64. Preparing to unpack .../13-libboost-iostreams1.83.0_1.83.0-2+b2_amd64.deb ... Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-2+b2) ... Selecting previously unselected package libboost-program-options1.83.0:amd64. Preparing to unpack .../14-libboost-program-options1.83.0_1.83.0-2+b2_amd64.deb ... Unpacking libboost-program-options1.83.0:amd64 (1.83.0-2+b2) ... Selecting previously unselected package libcommons-cli-java. Preparing to unpack .../15-libcommons-cli-java_1.6.0-1_all.deb ... Unpacking libcommons-cli-java (1.6.0-1) ... Selecting previously unselected package libmatthew-debug-java. Preparing to unpack .../16-libmatthew-debug-java_0.8.1-2_all.deb ... Unpacking libmatthew-debug-java (0.8.1-2) ... Selecting previously unselected package libunixsocket-java. Preparing to unpack .../17-libunixsocket-java_0.8.1-2_amd64.deb ... Unpacking libunixsocket-java (0.8.1-2) ... Selecting previously unselected package libdbus-java. Preparing to unpack .../18-libdbus-java_2.8-11_all.deb ... Unpacking libdbus-java (2.8-11) ... Selecting previously unselected package libgenome0:amd64. Preparing to unpack .../19-libgenome0_1.3.11+svn20110227.4616-6_amd64.deb ... Unpacking libgenome0:amd64 (1.3.11+svn20110227.4616-6) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../20-libgomp1_14-20240127-1_amd64.deb ... Unpacking libgomp1:amd64 (14-20240127-1) ... Selecting previously unselected package libmuscle1. Preparing to unpack .../21-libmuscle1_3.7+4565-7_amd64.deb ... Unpacking libmuscle1 (3.7+4565-7) ... Selecting previously unselected package libmems1:amd64. Preparing to unpack .../22-libmems1_1.6.0+4725-9+b2_amd64.deb ... Unpacking libmems1:amd64 (1.6.0+4725-9+b2) ... Selecting previously unselected package libzeus-jscl-java. Preparing to unpack .../23-libzeus-jscl-java_1.72-2_all.deb ... Unpacking libzeus-jscl-java (1.72-2) ... Selecting previously unselected package progressivemauve. Preparing to unpack .../24-progressivemauve_1.2.0+4713+dfsg-5+b2_amd64.deb ... Unpacking progressivemauve (1.2.0+4713+dfsg-5+b2) ... Selecting previously unselected package mauve-aligner. Preparing to unpack .../25-mauve-aligner_2.4.0+4736-6_all.deb ... Unpacking mauve-aligner (2.4.0+4736-6) ... Setting up libboost-program-options1.83.0:amd64 (1.83.0-2+b2) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up libgenome0:amd64 (1.3.11+svn20110227.4616-6) ... Setting up libcommons-cli-java (1.6.0-1) ... Setting up unzip (6.0-28) ... Setting up libboost-filesystem1.83.0:amd64 (1.83.0-2+b2) ... Setting up libgomp1:amd64 (14-20240127-1) ... Setting up libunixsocket-java (0.8.1-2) ... Setting up libmatthew-debug-java (0.8.1-2) ... Setting up libboost-iostreams1.83.0:amd64 (1.83.0-2+b2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libzeus-jscl-java (1.72-2) ... Setting up libcommons-pool-java (1.6-5) ... Setting up libdbus-java (2.8-11) ... Setting up libjgraph-java (5.12.4.2+dfsg-7) ... Setting up libcommons-dbcp-java (1.4-8) ... Setting up java-wrappers (0.4) ... Setting up libjgrapht0.8-java (0.8.3-6) ... Setting up libmuscle1 (3.7+4565-7) ... Setting up libmems1:amd64 (1.6.0+4725-9+b2) ... Setting up progressivemauve (1.2.0+4713+dfsg-5+b2) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libbiojava1.9-java (1:1.9.7+dfsg-1) ... Setting up libbiojava-java (1:1.9.7+dfsg-1) ... Setting up mauve-aligner (2.4.0+4736-6) ... Processing triggers for libc-bin (2.37-14) ... 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', '-y', 'install', 'mauve-aligner=2.4.0+4736-6'] 0m19.6s INFO: Running scripts post_install 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_install_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_install_exceptions'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 0m20.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m20.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m20.8s DEBUG: No broken symlinks as far as we can find. 0m20.8s INFO: /bin converted to /usr/bin by /usr merge 0m20.8s INFO: /lib converted to /usr/lib by /usr merge 0m20.8s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m20.8s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m20.8s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m20.8s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m20.8s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m20.8s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m20.8s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m20.8s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m20.8s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m20.8s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m20.8s INFO: /sbin converted to /usr/sbin by /usr merge 0m21.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', '-ac', '--ignore-obsolete'] 0m22.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', '-ac', '--ignore-obsolete'] 0m22.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.0s DUMP: 0.15.6 0m22.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.0s INFO: Running adequate version 0.15.6 now. 0m22.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'mauve-aligner'] 0m22.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'mauve-aligner'] 0m22.1s INFO: Running scripts pre_remove 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_exceptions'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/pre_remove_exceptions'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m23.4s DUMP: install ok installed apt apt 2.7.10 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.85 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240127-1 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed java-wrappers java-wrappers 0.4 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.10 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libbiojava-java libbiojava-java 1:1.9.7+dfsg-1 install ok installed libbiojava1.9-java libbiojava1.9-java 1:1.9.7+dfsg-1 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libboost-filesystem1.83.0:amd64 libboost-filesystem1.83.0 1.83.0-2+b2 install ok installed libboost-iostreams1.83.0:amd64 libboost-iostreams1.83.0 1.83.0-2+b2 install ok installed libboost-program-options1.83.0:amd64 libboost-program-options1.83.0 1.83.0-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-14 install ok installed libc6:amd64 libc6 2.37-14 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-1 install ok installed libcap2:amd64 libcap2 1:2.66-4+b2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcommons-cli-java libcommons-cli-java 1.6.0-1 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-8 install ok installed libcommons-pool-java libcommons-pool-java 1.6-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdbus-java libdbus-java 2.8-11 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240127-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgenome0:amd64 libgenome0 1.3.11+svn20110227.4616-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240127-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libguava-java libguava-java 32.0.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-1 install ok installed libjgraph-java libjgraph-java 5.12.4.2+dfsg-7 install ok installed libjgrapht0.8-java libjgrapht0.8-java 0.8.3-6 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmatthew-debug-java libmatthew-debug-java 0.8.1-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmems1:amd64 libmems1 1.6.0+4725-9+b2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libmuscle1 libmuscle1 3.7+4565-7 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.4-2 install ok installed libstdc++6:amd64 libstdc++6 14-20240127-1 install ok installed libsystemd0:amd64 libsystemd0 255.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libunixsocket-java libunixsocket-java 0.8.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzeus-jscl-java libzeus-jscl-java 1.72-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mauve-aligner mauve-aligner 2.4.0+4736-6 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl-base perl-base 5.38.2-3 install ok installed progressivemauve progressivemauve 1.2.0+4713+dfsg-5+b2 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2023d-1 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', 'remove', 'java-wrappers', 'libatinject-jsr330-api-java', 'libbiojava-java', 'libbiojava1.9-java', 'libboost-filesystem1.83.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libcommons-cli-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libdbus-java', 'liberror-prone-java', 'libgenome0:amd64', 'libgomp1:amd64', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java', 'libmatthew-debug-java', 'libmems1:amd64', 'libmuscle1', 'libunixsocket-java', 'libzeus-jscl-java', 'progressivemauve', 'unzip', 'mauve-aligner'] 0m24.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: java-wrappers libatinject-jsr330-api-java libbiojava-java libbiojava1.9-java libboost-filesystem1.83.0 libboost-iostreams1.83.0 libboost-program-options1.83.0 libcommons-cli-java libcommons-dbcp-java libcommons-pool-java libdbus-java liberror-prone-java libgenome0 libgomp1 libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java libmatthew-debug-java libmems1 libmuscle1 libunixsocket-java libzeus-jscl-java mauve-aligner progressivemauve unzip 0 upgraded, 0 newly installed, 26 to remove and 0 not upgraded. After this operation, 25.7 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5683 files and directories currently installed.) Removing mauve-aligner (2.4.0+4736-6) ... Removing java-wrappers (0.4) ... Removing libbiojava-java (1:1.9.7+dfsg-1) ... Removing libbiojava1.9-java (1:1.9.7+dfsg-1) ... Removing progressivemauve (1.2.0+4713+dfsg-5+b2) ... Removing libmems1:amd64 (1.6.0+4725-9+b2) ... Removing libboost-filesystem1.83.0:amd64 (1.83.0-2+b2) ... Removing libboost-iostreams1.83.0:amd64 (1.83.0-2+b2) ... Removing libboost-program-options1.83.0:amd64 (1.83.0-2+b2) ... Removing libcommons-cli-java (1.6.0-1) ... Removing libcommons-dbcp-java (1.4-8) ... Removing libcommons-pool-java (1.6-5) ... Removing libdbus-java (2.8-11) ... Removing libgenome0:amd64 (1.3.11+svn20110227.4616-6) ... Removing libmuscle1 (3.7+4565-7) ... Removing libgomp1:amd64 (14-20240127-1) ... Removing libjgrapht0.8-java (0.8.3-6) ... Removing libjgraph-java (5.12.4.2+dfsg-7) ... Removing libmatthew-debug-java (0.8.1-2) ... Removing libunixsocket-java (0.8.1-2) ... Removing libzeus-jscl-java (1.72-2) ... Removing unzip (6.0-28) ... Removing libguava-java (32.0.1-1) ... Removing liberror-prone-java (2.18.0-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libjsr305-java (0.1~+svn49-11) ... Processing triggers for libc-bin (2.37-14) ... 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', 'remove', 'java-wrappers', 'libatinject-jsr330-api-java', 'libbiojava-java', 'libbiojava1.9-java', 'libboost-filesystem1.83.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libcommons-cli-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libdbus-java', 'liberror-prone-java', 'libgenome0:amd64', 'libgomp1:amd64', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java', 'libmatthew-debug-java', 'libmems1:amd64', 'libmuscle1', 'libunixsocket-java', 'libzeus-jscl-java', 'progressivemauve', 'unzip', 'mauve-aligner'] 0m24.7s INFO: Running scripts post_remove 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_remove_exceptions'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_remove_exceptions'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg', '--purge', 'java-wrappers', 'libatinject-jsr330-api-java', 'libbiojava-java', 'libbiojava1.9-java', 'libboost-filesystem1.83.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libcommons-cli-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libdbus-java', 'liberror-prone-java', 'libgenome0:amd64', 'libgomp1:amd64', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java', 'libmatthew-debug-java', 'libmems1:amd64', 'libmuscle1', 'libunixsocket-java', 'libzeus-jscl-java', 'progressivemauve', 'unzip'] 0m24.8s DUMP: dpkg: warning: ignoring request to remove java-wrappers which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libbiojava-java which isn't installed dpkg: warning: ignoring request to remove libbiojava1.9-java which isn't installed dpkg: warning: ignoring request to remove libboost-filesystem1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost-iostreams1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost-program-options1.83.0 which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-dbcp-java which isn't installed dpkg: warning: ignoring request to remove libcommons-pool-java which isn't installed dpkg: warning: ignoring request to remove libdbus-java which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libgenome0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libjgraph-java which isn't installed dpkg: warning: ignoring request to remove libjgrapht0.8-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove libmatthew-debug-java which isn't installed dpkg: warning: ignoring request to remove libmems1 which isn't installed dpkg: warning: ignoring request to remove libmuscle1 which isn't installed dpkg: warning: ignoring request to remove libunixsocket-java which isn't installed dpkg: warning: ignoring request to remove libzeus-jscl-java which isn't installed dpkg: warning: ignoring request to remove progressivemauve which isn't installed (Reading database ... 5224 files and directories currently installed.) Purging configuration files for unzip (6.0-28) ... 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg', '--purge', 'java-wrappers', 'libatinject-jsr330-api-java', 'libbiojava-java', 'libbiojava1.9-java', 'libboost-filesystem1.83.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libcommons-cli-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libdbus-java', 'liberror-prone-java', 'libgenome0:amd64', 'libgomp1:amd64', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java', 'libmatthew-debug-java', 'libmems1:amd64', 'libmuscle1', 'libunixsocket-java', 'libzeus-jscl-java', 'progressivemauve', 'unzip'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg', '--purge', 'mauve-aligner'] 0m24.8s DUMP: dpkg: warning: ignoring request to remove mauve-aligner which isn't installed 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg', '--purge', 'mauve-aligner'] 0m24.8s INFO: Running scripts post_purge 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_purge_exceptions'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_purge_exceptions'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg', '--purge', '--pending'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg', '--purge', '--pending'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg', '--remove', '--pending'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg', '--remove', '--pending'] 0m24.8s INFO: Running scripts post_test 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_test_exceptions'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'tmp/scripts/post_test_exceptions'] 0m24.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m25.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m25.6s DEBUG: No broken symlinks as far as we can find. 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg-divert', '--list'] 0m25.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'dpkg-divert', '--list'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', 'clean'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46', 'apt-get', 'clean'] 0m25.6s DEBUG: Recording chroot state 0m26.2s INFO: PASS: Installation and purging test. 0m26.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/shm'] 0m26.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/shm'] 0m26.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/console'] 0m26.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/console'] 0m26.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/ptmx'] 0m26.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/ptmx'] 0m26.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/pts'] 0m26.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/dev/pts'] 0m26.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/proc'] 0m26.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46/proc'] 0m26.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m26.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_mr0mt46'] 0m26.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_mr0mt46 0m26.8s INFO: PASS: All tests. 0m26.8s INFO: piuparts run ends. ret=0 End: 2024-01-29 07:42:08 GMT