Start: 2025-04-14 14:44:39 GMT Package: python3-nanoget Source: python-nanoget Version: 1.19.3-1 Installed-Size: 52 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-numpy, python3-pandas (>= 2.0.0), python3-pysam, python3:any, python3-nanomath Description: extract information from Oxford Nanopore sequencing data and alignments Homepage: https://github.com/wdecoster/nanoget Description-md5: b717656953ba87a065e49966061c1863 Section: python Priority: optional Filename: pool/main/p/python-nanoget/python3-nanoget_1.19.3-1_all.deb Size: 11700 MD5sum: b27c8749ed1dec14ef9ed4d10ff99a5f SHA256: a69909d14fdd8d5ed3137c6a6864ab1562467bf49c44d37b55cfac7d65735510 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-nanoget=1.19.3-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --fail-on-broken-symlinks --install-recommends --scriptsdir /etc/piuparts/scripts-broken-symlinks -i :/usr/lib/libcxx/test/std/experimental/filesystem/Inputs/static_test_env/bad_symlink -i :/usr/share/gocode/src/github.com/Masterminds/glide/testdata/path/x/vendor -i :/usr/share/gocode/src/github.com/constabulary/gb/internal/fileutils/_testdata/copyfile/a/rick -i :/usr/share/gocode/src/github.com/hashicorp/atlas-go/archive/test-fixtures/archive-symlink/link/link -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/exe -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/mnt -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26231/ns/net -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/cwd -i :/usr/share/gocode/src/github.com/prometheus/procfs/fixtures/26232/root -i :/etc/systemd/system/display-manager.service -i :/usr/share/civicrm/packages/OpenFlashChart/open-flash-chart.swf -I ':/usr/share/mscore3?-.*/sound/sf[2z]' -i :/var/lib/mender -I ':/etc/.*/supervise' -I '/usr/include/python2\.7_d/.*\.h' -I '/usr/include/python3\..dm/.*\.h' -I '/usr/include/python3\..dm/cpython' -I '/usr/include/python3\..dm/internal' -I ':/usr/lib/jvm/java-.*-openjdk-.*/src\.zip' -I ':/usr/share/doc/kde/HTML/.*/common' -I ':/usr/share/man/man1/(.*-)?python.*-config\.1\.gz' -I ':/usr/lib/openjk/Jedi(Academy|Outcast)/base/assets.\.pk3' -I ':/usr/lib/rtcw/main/.*\.(cfg|pk3)' --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-nanoget=1.19.3-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpg68b4gnx 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpg68b4gnx 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpg68b4gnx/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-broken-symlinks to /srv/piuparts.debian.org/tmp/tmpg68b4gnx/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', 'update'] 0m2.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7421 kB] Fetched 17.8 MB in 1s (13.0 MB/s) Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: debianutils libc-bin libc6 libcap2 perl-base tzdata 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5526 kB of archives. After this operation, 11.3 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.22 [92.2 kB] Get:2 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.40.1-3 [1665 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.41-7 [2847 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.41-7 [636 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.75-6 [28.0 kB] Get:6 http://deb.debian.org/debian sid/main amd64 tzdata all 2025b-2 [260 kB] Preconfiguring packages ... Fetched 5526 kB in 0s (167 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../debianutils_5.22_amd64.deb ... Unpacking debianutils (5.22) over (5.21) ... Setting up debianutils (5.22) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../perl-base_5.40.1-3_amd64.deb ... Unpacking perl-base (5.40.1-3) over (5.40.1-2) ... Setting up perl-base (5.40.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../libc6_2.41-7_amd64.deb ... Unpacking libc6:amd64 (2.41-7) over (2.41-6) ... Setting up libc6:amd64 (2.41-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../libc-bin_2.41-7_amd64.deb ... Unpacking libc-bin (2.41-7) over (2.41-6) ... Setting up libc-bin (2.41-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.75-6_amd64.deb ... Unpacking libcap2:amd64 (1:2.75-6) over (1:2.75-5) ... Setting up libcap2:amd64 (1:2.75-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4937 files and directories currently installed.) Preparing to unpack .../tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) over (2025b-1) ... Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Apr 14 14:44:42 UTC 2025. Universal Time is now: Mon Apr 14 14:44:42 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.41-7) ... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: 3d7cdc60437483be0bb40e94a36f9b2a - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_fake-essential_unbreak_symlinks'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', 'clean'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', 'clean'] 0m3.9s DEBUG: Recording chroot state 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DUMP: install ok installed apt apt 3.0.0 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2 install ok installed bsdutils bsdutils 1:2.41-4 install ok installed coreutils coreutils 9.7-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.22 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-7 install ok installed libc6:amd64 libc6 2.41-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-6 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-4 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-3 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libuuid1:amd64 libuuid1 2.41-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-4 install ok installed login.defs login.defs 1:4.17.4-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-4 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-1 install ok installed perl-base perl-base 5.40.1-3 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg-divert', '--list'] 0m4.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg-divert', '--list'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: apt-cache does not know about any of the requested packages 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_test_root_password'] 0m4.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_test_root_password'] 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 0m4.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 0m4.6s DEBUG: No broken symlinks as far as we can find. 0m4.6s INFO: Running scripts pre_install 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 0m5.0s DEBUG: No broken symlinks as far as we can find. 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-cache', 'policy'] 0m5.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-cache', 'policy'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-cache', 'policy', 'python3-nanoget'] 0m5.4s DUMP: python3-nanoget: Installed: (none) Candidate: 1.19.3-1 Version table: 1.19.3-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-cache', 'policy', 'python3-nanoget'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', '-y', 'install', 'python3-nanoget=1.19.3-1'] 1m2.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fakeroot fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu isympy-common isympy3 javascript-common krb5-locales libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan8 libatomic1 libbinutils libblas3 libblosc1 libblosc2-4 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libclang-cpp19 libcom-err2 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdeflate0 libdpkg-perl libedit2 libexpat1 libexpat1-dev libfakeroot libffi-dev libffi8 libfile-fcntllock-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-14-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-310 libhts3t64 libhtscodecs2 libhwasan0 libhwloc-plugins libhwloc15 libidn2-0 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libopenjp2-7 libp11-kit0 libpciaccess0 libperl5.40 libpfm4 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe1 libsharpyuv0 libsnappy1v5 libssh2-1t64 libstdc++-14-dev libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-dev libxnvctrl0 libxrender1 libxslt1.1 libxss1 libyaml-0-2 libz3-4 libz3-dev libzopfli1 linux-libc-dev llvm-19 llvm-19-dev llvm-19-linker-tools llvm-19-runtime llvm-19-tools make manpages manpages-dev media-types ncbi-blast+ ncbi-data netbase numba-doc ocl-icd-libopencl1 openssl patch perl perl-modules-5.40 publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-attr python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cpuinfo python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-deprecated python3-dev python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-html5lib python3-idna python3-jinja2 python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-nanomath python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-platformdirs python3-pooch python3-pygments python3-pyparsing python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tk python3-tqdm python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-webencodings python3-wheel python3-wrapt python3-yaml python3-zopfli python3.13 python3.13-dev python3.13-minimal python3.13-tk readline-common rpcsvc-proto sgml-base shared-mime-info sphinx-rtd-theme-common sq tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zlib1g-dev Suggested packages: binutils-doc gprofng-gui binutils-gold blt-demo bzip2-doc cpp-doc gcc-14-locales cpp-14-doc debian-keyring fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-14-multilib gcc-14-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu apache2 | lighttpd | httpd libc-devtools glibc-doc sensible-utils git bzr rng-tools gdbm-l10n low-memory-monitor gnutls-bin gpm krb5-doc krb5-user libhwloc-contrib-plugins libjs-jquery-ui-docs liblcms2-utils ncurses-doc pciutils libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libstdc++-14-doc tcl8.6 tk8.6 pkg-config llvm-19-doc make-doc man-browser opencl-icd ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 python3-igraph raxml samtools t-coffee wise python-bottleneck-doc python-charset-normalizer-doc python-cycler-doc python3-genshi python-jinja2-doc llvmlite-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 gir1.2-gtk-4.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 nvidia-cuda-toolkit gfortran python-numpy-doc python3-pytest python-openpyxl-doc python-pandas-doc python3-statsmodels python-pil-doc python3-paramiko python-pygments-doc ttf-bitstream-vera python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc texlive-fonts-extra python-sympy-doc python3-netcdf4 python-tables-doc vitables tix python3-tk-dbg python3-setuptools python3.13-venv python3.13-doc readline-doc sgml-base-doc debhelper The following NEW packages will be installed: binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fakeroot fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu isympy-common isympy3 javascript-common krb5-locales libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan8 libatomic1 libbinutils libblas3 libblosc1 libblosc2-4 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libclang-cpp19 libcom-err2 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdeflate0 libdpkg-perl libedit2 libexpat1 libexpat1-dev libfakeroot libffi-dev libffi8 libfile-fcntllock-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-14-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-310 libhts3t64 libhtscodecs2 libhwasan0 libhwloc-plugins libhwloc15 libidn2-0 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libopenjp2-7 libp11-kit0 libpciaccess0 libperl5.40 libpfm4 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe1 libsharpyuv0 libsnappy1v5 libssh2-1t64 libstdc++-14-dev libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-dev libxnvctrl0 libxrender1 libxslt1.1 libxss1 libyaml-0-2 libz3-4 libz3-dev libzopfli1 linux-libc-dev llvm-19 llvm-19-dev llvm-19-linker-tools llvm-19-runtime llvm-19-tools make manpages manpages-dev media-types ncbi-blast+ ncbi-data netbase numba-doc ocl-icd-libopencl1 openssl patch perl perl-modules-5.40 publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-attr python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cpuinfo python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-deprecated python3-dev python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-html5lib python3-idna python3-jinja2 python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-nanoget python3-nanomath python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-platformdirs python3-pooch python3-pygments python3-pyparsing python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tk python3-tqdm python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-webencodings python3-wheel python3-wrapt python3-yaml python3-zopfli python3.13 python3.13-dev python3.13-minimal python3.13-tk readline-common rpcsvc-proto sgml-base shared-mime-info sphinx-rtd-theme-common sq tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zlib1g-dev 0 upgraded, 313 newly installed, 0 to remove and 0 not upgraded. Need to get 406 MB of archives. After this operation, 1874 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 binfmt-support amd64 2.2.2-7 [64.3 kB] Get:3 http://deb.debian.org/debian sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:4 http://deb.debian.org/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.3-2 [861 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get:7 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.3-2 [2212 kB] Get:8 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.3-1 [27.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:10 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:13 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.3-2 [1953 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.3-2 [751 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.3-1 [10.2 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.3-1 [28.2 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:22 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:23 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:24 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:25 http://deb.debian.org/debian sid/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Get:26 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.0-1 [1491 kB] Get:27 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB] Get:28 http://deb.debian.org/debian sid/main amd64 krb5-locales all 1.21.3-5 [101 kB] Get:29 http://deb.debian.org/debian sid/main amd64 manpages all 6.9.1-1 [1393 kB] Get:30 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-3 [3021 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-3 [4320 kB] Get:34 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-3 [267 kB] Get:35 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.1-1 [660 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libsframe1 amd64 2.44-3 [78.4 kB] Get:37 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.44-3 [2509 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.44-3 [534 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.44-3 [808 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.44-3 [156 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.44-3 [88.6 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:43 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3 [1014 kB] Get:44 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.44-3 [265 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:49 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:50 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:52 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+24 [217 kB] Get:53 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:54 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:55 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:56 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:68 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get:69 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get:70 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-7 [57.3 kB] Get:71 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.22-1 [2542 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:73 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-7 [1992 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.27-1 [659 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.2-1 [729 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Get:78 http://deb.debian.org/debian sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19 [11.0 MB] Get:79 http://deb.debian.org/debian sid/main amd64 cpp-14 amd64 14.2.0-19 [1280 B] Get:80 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Get:81 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Get:82 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 14.2.0-19 [42.8 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:86 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Get:87 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:93 http://deb.debian.org/debian sid/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19 [21.4 MB] Get:94 http://deb.debian.org/debian sid/main amd64 gcc-14 amd64 14.2.0-19 [540 kB] Get:95 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Get:96 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Get:97 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:98 http://deb.debian.org/debian sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19 [12.1 MB] Get:99 http://deb.debian.org/debian sid/main amd64 g++-14 amd64 14.2.0-19 [22.5 kB] Get:100 http://deb.debian.org/debian sid/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:101 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Get:102 http://deb.debian.org/debian sid/main amd64 make amd64 4.4.1-2 [463 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libdpkg-perl all 1.22.18 [649 kB] Get:104 http://deb.debian.org/debian sid/main amd64 patch amd64 2.8-1 [134 kB] Get:105 http://deb.debian.org/debian sid/main amd64 dpkg-dev all 1.22.18 [1338 kB] Get:106 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.12 [4624 B] Get:107 http://deb.debian.org/debian sid/main amd64 libfakeroot amd64 1.37.1.1-1 [29.6 kB] Get:108 http://deb.debian.org/debian sid/main amd64 fakeroot amd64 1.37.1.1-1 [76.0 kB] Get:109 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:110 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:111 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get:112 http://deb.debian.org/debian sid/main amd64 isympy-common all 1.13.3-5 [234 kB] Get:113 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:114 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get:115 http://deb.debian.org/debian sid/main amd64 isympy3 all 1.13.3-5 [6748 B] Get:116 http://deb.debian.org/debian sid/main amd64 javascript-common all 12 [5236 B] Get:117 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libalgorithm-diff-xs-perl amd64 0.04-9 [11.1 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libalgorithm-merge-perl all 0.08-5 [11.8 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.2-1 [29.3 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-1+b2 [49.5 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libblosc2-4 amd64 2.17.1+ds-1 [193 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libllvm19 amd64 1:19.1.7-3 [26.0 MB] Get:132 http://deb.debian.org/debian sid/main amd64 libclang-cpp19 amd64 1:19.1.7-3 [13.2 MB] Get:133 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:142 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:152 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.13.0-1 [374 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.13.0-1 [381 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.7.1-1 [161 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libffi-dev amd64 3.4.7-1 [60.8 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libfile-fcntllock-perl amd64 0.22-4+b4 [34.6 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libglib2.0-data all 2.84.1-1 [1284 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libgpg-error-l10n all 1.51-4 [114 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libgpm2 amd64 1.20.7-11+b2 [14.4 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:170 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get:175 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.12.0-1 [164 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libhwloc-plugins amd64 2.12.0-1 [18.1 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get:185 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libldap-common all 2.6.9+dfsg-2 [34.8 kB] Get:187 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:188 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:189 http://deb.debian.org/debian sid/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.3-1 [357 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.3-1 [149 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.3-1 [236 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libpfm4 amd64 4.13.0+git99-gc5587f9-1 [371 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libpython3.13 amd64 3.13.3-2 [2156 kB] Get:198 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libpython3.13-dev amd64 3.13.3-2 [5015 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.13.3-1 [10.4 kB] Get:201 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get:202 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-9 [66.7 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libtbbbind-2-5 amd64 2022.1.0-1 [14.0 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libtbbmalloc2 amd64 2022.1.0-1 [50.2 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libtbb12 amd64 2022.1.0-1 [91.7 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.4 [793 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libz3-dev amd64 4.13.3-1 [107 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get:218 http://deb.debian.org/debian sid/main amd64 llvm-19-runtime amd64 1:19.1.7-3 [551 kB] Get:219 http://deb.debian.org/debian sid/main amd64 llvm-19-linker-tools amd64 1:19.1.7-3 [1260 kB] Get:220 http://deb.debian.org/debian sid/main amd64 llvm-19 amd64 1:19.1.7-3 [16.4 MB] Get:221 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get:222 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Get:223 http://deb.debian.org/debian sid/main amd64 llvm-19-tools amd64 1:19.1.7-3 [511 kB] Get:224 http://deb.debian.org/debian sid/main amd64 llvm-19-dev amd64 1:19.1.7-3 [43.1 MB] Get:225 http://deb.debian.org/debian sid/main amd64 manpages-dev all 6.9.1-1 [2122 kB] Get:226 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get:227 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB] Get:228 http://deb.debian.org/debian sid/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get:229 http://deb.debian.org/debian sid/main amd64 numba-doc all 0.61.2+dfsg-1 [1035 kB] Get:230 http://deb.debian.org/debian sid/main amd64 publicsuffix all 20250328.1952-0.1 [296 kB] Get:231 http://deb.debian.org/debian sid/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get:232 http://deb.debian.org/debian sid/main amd64 python-biopython-doc all 1.85+dfsg-4 [18.2 MB] Get:233 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.10.1+dfsg1-2 [2736 kB] Get:234 http://deb.debian.org/debian sid/main amd64 python-odf-doc all 1.4.2-4 [5344 kB] Get:235 http://deb.debian.org/debian sid/main amd64 python3-legacy-cgi all 2.6.3-1 [16.5 kB] Get:236 http://deb.debian.org/debian sid/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:237 http://deb.debian.org/debian sid/main amd64 python3-odf all 1.4.2-4 [78.4 kB] Get:238 http://deb.debian.org/debian sid/main amd64 python-odf-tools all 1.4.2-4 [28.4 kB] Get:239 http://deb.debian.org/debian sid/main amd64 python-tables-data all 3.10.2-2 [47.3 kB] Get:240 http://deb.debian.org/debian sid/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get:241 http://deb.debian.org/debian sid/main amd64 python3-babel all 2.17.0-1 [117 kB] Get:242 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:243 http://deb.debian.org/debian sid/main amd64 python3.13-tk amd64 3.13.3-2 [107 kB] Get:244 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.13.3-1 [9548 B] Get:245 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Get:246 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get:247 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:248 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:249 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:250 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get:251 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:252 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:253 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get:254 http://deb.debian.org/debian sid/main amd64 python3-bottleneck amd64 1.4.2+ds1-2+b1 [92.3 kB] Get:255 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get:256 http://deb.debian.org/debian sid/main amd64 python3-soupsieve all 2.6-1 [38.3 kB] Get:257 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get:258 http://deb.debian.org/debian sid/main amd64 python3-bs4 all 4.13.3-2 [166 kB] Get:259 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:260 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.1-1+b1 [125 kB] Get:261 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB] Get:262 http://deb.debian.org/debian sid/main amd64 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Get:263 http://deb.debian.org/debian sid/main amd64 python3-cssselect all 1.3.0-1 [21.9 kB] Get:264 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:265 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:266 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.2.1-1 [32.9 kB] Get:267 http://deb.debian.org/debian sid/main amd64 python3-wrapt amd64 1.15.0-4+b1 [43.6 kB] Get:268 http://deb.debian.org/debian sid/main amd64 python3-deprecated all 1.2.18-1 [14.8 kB] Get:269 http://deb.debian.org/debian sid/main amd64 python3.13-dev amd64 3.13.3-2 [508 kB] Get:270 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.13.3-1 [26.1 kB] Get:271 http://deb.debian.org/debian sid/main amd64 python3-et-xmlfile all 2.0.0-1 [78.2 kB] Get:272 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get:273 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Get:274 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.3.2-1 [1297 kB] Get:275 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB] Get:276 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.15.2-7 [16.3 MB] Get:277 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get:278 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b4 [299 kB] Get:279 http://deb.debian.org/debian sid/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get:280 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:281 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.57.0-1 [1438 kB] Get:282 http://deb.debian.org/debian sid/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB] Get:283 http://deb.debian.org/debian sid/main amd64 python3-html5lib all 1.2-2 [92.1 kB] Get:284 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:285 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get:286 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get:287 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get:288 http://deb.debian.org/debian sid/main amd64 python3-llvmlite amd64 0.44.0-1 [231 kB] Get:289 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:290 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.2-3 [55.7 kB] Get:291 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-2 [23.8 MB] Get:292 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2025.2-1 [151 kB] Get:293 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get:294 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get:295 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get:296 http://deb.debian.org/debian sid/main amd64 python3-nanomath all 1.2.1+ds-1 [8120 B] Get:297 http://deb.debian.org/debian sid/main amd64 python3-nanoget all 1.19.3-1 [11.7 kB] Get:298 http://deb.debian.org/debian sid/main amd64 python3-numba amd64 0.61.2+dfsg-1 [1773 kB] Get:299 http://deb.debian.org/debian sid/main amd64 python3-numexpr amd64 2.10.2-1+b2 [129 kB] Get:300 http://deb.debian.org/debian sid/main amd64 python3-olefile all 0.47-1 [39.3 kB] Get:301 http://deb.debian.org/debian sid/main amd64 python3-openpyxl all 3.1.5+dfsg-1 [166 kB] Get:302 http://deb.debian.org/debian sid/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get:303 http://deb.debian.org/debian sid/main amd64 python3-pip all 25.0.1+dfsg-1 [1455 kB] Get:304 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.3.0-2 [114 kB] Get:305 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get:306 http://deb.debian.org/debian sid/main amd64 python3-pooch all 1.8.2-1 [58.4 kB] Get:307 http://deb.debian.org/debian sid/main amd64 python3-tables-lib amd64 3.10.2-2+b1 [503 kB] Get:308 http://deb.debian.org/debian sid/main amd64 python3-tables all 3.10.2-2 [353 kB] Get:309 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.67.1-3 [90.3 kB] Get:310 http://deb.debian.org/debian sid/main amd64 python3-tz all 2025.2-1 [4072 B] Get:311 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get:312 http://deb.debian.org/debian sid/main amd64 sq amd64 1.3.1-2 [5650 kB] Get:313 http://deb.debian.org/debian sid/main amd64 xdg-user-dirs amd64 0.18-2 [53.2 kB] Preconfiguring packages ... Fetched 406 MB in 4s (94.2 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4941 files and directories currently installed.) Preparing to unpack .../0-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../1-binfmt-support_2.2.2-7_amd64.deb ... Unpacking binfmt-support (2.2.2-7) ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5340 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.3-1_amd64.deb ... Unpacking python3-minimal (3.13.3-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_amd64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.3-1) ... Setting up python3-minimal (3.13.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5844 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.3-1_amd64.deb ... Unpacking python3 (3.13.3-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_14.2.0-19_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-19) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../006-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package bzip2. 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Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up fonts-lato (2.015-1) ... Setting up libgpm2:amd64 (1.20.7-11+b2) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libgpg-error0:amd64 (1.51-4) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up xdg-user-dirs (0.18-2) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up manpages (6.9.1-1) ... Setting up fonts-lyx (2.4.3-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libsasl2-modules:amd64 (2.1.28+dfsg1-9) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up binutils-common:amd64 (2.44-3) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up linux-libc-dev (6.12.22-1) ... Setting up libctf-nobfd0:amd64 (2.44-3) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... Setting up libqhull-r8.0:amd64 (2020.2-6+b2) ... Setting up liblzo2-2:amd64 (2.10-3+b1) ... Setting up krb5-locales (1.21.3-5) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up sq (1.3.1-2) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up bzip2 (1.0.8-6) ... Setting up libldap-common (2.6.9+dfsg-2) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libsframe1:amd64 (2.44-3) ... Setting up libfakeroot:amd64 (1.37.1.1-1) ... Setting up python-babel-localedata (2.17.0-1) ... Setting up libjansson4:amd64 (2.14-2+b3) ... Setting up libsnappy1v5:amd64 (1.2.2-1) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up fakeroot (1.37.1.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up unicode-data (15.1.0-1) ... Setting up libblosc2-4:amd64 (2.17.1+ds-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libglib2.0-data (2.84.1-1) ... Setting up libpfm4:amd64 (4.13.0+git99-gc5587f9-1) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3.1) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up make (4.4.1-2) ... Setting up libmpfr6:amd64 (4.2.2-1) ... Setting up libncurses6:amd64 (6.5+20250216-2) ... Setting up xz-utils (5.8.1-1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libquadmath0:amd64 (14.2.0-19) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.47-1.1) ... Setting up libhwloc15:amd64 (2.12.0-1) ... Setting up libmpc3:amd64 (1.3.1-1+b3) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Setting up libatomic1:amd64 (14.2.0-19) ... Setting up patch (2.8-1) ... Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libubsan1:amd64 (14.2.0-19) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up perl-modules-5.40 (5.40.1-3) ... Setting up ocl-icd-libopencl1:amd64 (2.3.3-1) ... Setting up libhwasan0:amd64 (14.2.0-19) ... Setting up libcrypt-dev:amd64 (1:4.4.38-1) ... Setting up libtiff6:amd64 (4.7.0-3) ... Setting up libasan8:amd64 (14.2.0-19) ... Setting up libblosc1:amd64 (1.21.5+ds-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libopenjp2-7:amd64 (2.5.3-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libmbedcrypto16:amd64 (3.6.3-1) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtsan2:amd64 (14.2.0-19) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.44-3) ... Setting up libisl23:amd64 (0.27-1) ... Setting up libc-dev-bin (2.41-7) ... Setting up python-matplotlib-data (3.10.1+dfsg1-2) ... Setting up openssl (3.5.0-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libgpg-error-l10n (1.51-4) ... Setting up readline-common (8.2-6) ... Setting up publicsuffix (20250328.1952-0.1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up python-tables-data (3.10.2-2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libcc1-0:amd64 (14.2.0-19) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up liblsan0:amd64 (14.2.0-19) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libitm1:amd64 (14.2.0-19) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.44-3) ... Setting up libllvm19:amd64 (1:19.1.7-3) ... Setting up libz3-dev:amd64 (4.13.3-1) ... Setting up manpages-dev (6.9.1-1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libffi-dev:amd64 (3.4.7-1) ... Setting up libtbbbind-2-5:amd64 (2022.1.0-1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up libperl5.40:amd64 (5.40.1-3) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up perl (5.40.1-3) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libglib2.0-0t64:amd64 (2.84.1-1) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.44-3) ... Setting up libmbedx509-7:amd64 (3.6.3-1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up python-odf-doc (1.4.2-4) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-19) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libdpkg-perl (1.22.18) ... Setting up cpp-14 (14.2.0-19) ... Setting up libmbedtls21:amd64 (3.6.3-1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up python-biopython-doc (1.85+dfsg-4) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.2) ... Setting up libc6-dev:amd64 (2.41-7) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up llvm-19-linker-tools (1:19.1.7-3) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up numba-doc (0.61.2+dfsg-1) ... Setting up libgcc-14-dev:amd64 (14.2.0-19) ... Setting up llvm-19-runtime (1:19.1.7-3) ... Setting up libstdc++-14-dev:amd64 (14.2.0-19) ... Setting up libpython3.13-stdlib:amd64 (3.13.3-2) ... Setting up libpython3-stdlib:amd64 (3.13.3-1) ... Setting up libclang-cpp19 (1:19.1.7-3) ... Setting up binutils-x86-64-linux-gnu (2.44-3) ... Setting up libpython3.13:amd64 (3.13.3-2) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libncurses-dev:amd64 (6.5+20250216-2) ... Setting up libfile-fcntllock-perl (0.22-4+b4) ... Setting up python3.13 (3.13.3-2) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.3-1) ... Setting up libtbb12:amd64 (2022.1.0-1) ... Setting up binutils (2.44-3) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up libhwloc-plugins:amd64 (2.12.0-1) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-webencodings (0.5.1-5) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.3-2) ... Setting up python3-platformdirs (4.3.7-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up dpkg-dev (1.22.18) ... Setting up python3-fs (2.4.16-7) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up python3-decorator (5.2.1-1) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (24.2-3) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libexpat1-dev:amd64 (2.7.1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-idna (3.10-1) ... Setting up python3-wrapt (1.15.0-4+b1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-cpuinfo (9.0.0+git20221119-3) ... Setting up python3-html5lib (1.2-2) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-urllib3 (2.3.0-2) ... Setting up python3-legacy-cgi (2.6.3-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up python3-lxml:amd64 (5.3.2-1) ... Setting up cpp (4:14.2.0-1) ... Setting up python3-et-xmlfile (2.0.0-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-1+b1) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-cssselect (1.3.0-1) ... Setting up libalgorithm-diff-xs-perl (0.04-9) ... Setting up python3-soupsieve (2.6-1) ... Setting up python3-deprecated (1.2.18-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libalgorithm-merge-perl (0.08-5) ... Setting up python3-sympy (1.13.3-5) ... Setting up python3-attr (25.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-scipy (1.15.2-7) ... Setting up python3-cairo (1.27.0-2) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libcurl4t64:amd64 (8.13.0-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.4.0+dfsg-2) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.1-1+b1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b4) ... Setting up python3-olefile (0.47-1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Setting up python3-tqdm (4.67.1-3) ... Setting up isympy-common (1.13.3-5) ... Setting up libcurl3t64-gnutls:amd64 (8.13.0-1) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up python3-tk:amd64 (3.13.3-1) ... Setting up python3-pytz (2025.2-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-tz (2025.2-1) ... Setting up python3-bs4 (4.13.3-2) ... Setting up gcc-14 (14.2.0-19) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-9) ... Setting up python3-pil.imagetk:amd64 (11.1.0-5+b1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-openpyxl (3.1.5+dfsg-1) ... Setting up isympy3 (1.13.3-5) ... Setting up libpython3.13-dev:amd64 (3.13.3-2) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up python3-bottleneck (1.4.2+ds1-2+b1) ... Setting up python3-numexpr (2.10.2-1+b2) ... Setting up python3-pip (25.0.1+dfsg-1) ... Setting up python3-nanomath (1.2.1+ds-1) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-19) ... Setting up python3-reportlab (4.3.1-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up llvm-19 (1:19.1.7-3) ... Setting up g++-14 (14.2.0-19) ... Setting up llvm-19-tools (1:19.1.7-3) ... Setting up python3-odf (1.4.2-4) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up libpython3-dev:amd64 (3.13.3-1) ... Setting up python3.13-dev (3.13.3-2) ... Setting up python3-tables-lib (3.10.2-2+b1) ... Setting up python-odf-tools (1.4.2-4) ... Setting up python3-tables (3.10.2-2) ... Setting up gcc (4:14.2.0-1) ... Setting up python3-llvmlite (0.44.0-1) ... Setting up python3-pooch (1.8.2-1) ... Setting up python3-dev (3.13.3-1) ... Setting up llvm-19-dev (1:19.1.7-3) ... Setting up g++ (4:14.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.12) ... Setting up python3-numba (0.61.2+dfsg-1) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up python3-fonttools (4.57.0-1) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-2) ... Processing triggers for libc-bin (2.41-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-4) ... Setting up python3-nanoget (1.19.3-1) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', '-y', 'install', 'python3-nanoget=1.19.3-1'] 1m2.3s INFO: Running scripts post_install 1m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_install_exceptions'] 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_install_exceptions'] 1m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 1m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_install_extras_unbreak_symlinks'] 1m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'systemd-tmpfiles', '--cat-config'] 1m2.6s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 1m2.6s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'systemd-tmpfiles', '--cat-config'] 1m2.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 1m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 1m6.8s DEBUG: No broken symlinks as far as we can find. 1m8.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', '-ac', '--ignore-obsolete'] 1m12.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', '-ac', '--ignore-obsolete'] 1m12.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m12.5s DUMP: 0.15.6 1m12.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m12.5s INFO: Running adequate version 0.15.6 now. 1m12.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'python3-nanoget'] 1m12.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'python3-nanoget'] 1m12.6s INFO: Running scripts pre_remove 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_exceptions'] 1m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/pre_remove_exceptions'] 1m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m16.3s DUMP: install ok installed apt apt 3.0.0 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2 install ok installed binfmt-support binfmt-support 2.2.2-7 install ok installed binutils binutils 2.44-3 install ok installed binutils-common:amd64 binutils-common 2.44-3 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.44-3 install ok installed blt blt 2.5.3+dfsg-8 install ok installed bsdutils bsdutils 1:2.41-4 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6 install ok installed ca-certificates ca-certificates 20241223 install ok installed coreutils coreutils 9.7-1 install ok installed cpp cpp 4:14.2.0-1 install ok installed cpp-14 cpp-14 14.2.0-19 install ok installed cpp-14-x86-64-linux-gnu cpp-14-x86-64-linux-gnu 14.2.0-19 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:14.2.0-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.22 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed dpkg-dev dpkg-dev 1.22.18 install ok installed fakeroot fakeroot 1.37.1.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.3 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-lyx fonts-lyx 2.4.3-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed g++ g++ 4:14.2.0-1 install ok installed g++-14 g++-14 14.2.0-19 install ok installed g++-14-x86-64-linux-gnu g++-14-x86-64-linux-gnu 14.2.0-19 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:14.2.0-1 install ok installed gcc gcc 4:14.2.0-1 install ok installed gcc-14 gcc-14 14.2.0-19 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu 14.2.0-19 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:14.2.0-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed isympy-common isympy-common 1.13.3-5 install ok installed isympy3 isympy3 1.13.3-5 install ok installed javascript-common javascript-common 12 install ok installed krb5-locales krb5-locales 1.21.3-5 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-9 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-5 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0 install ok installed libasan8:amd64 libasan8 14.2.0-19 install ok installed libatomic1:amd64 libatomic1 14.2.0-19 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libbinutils:amd64 libbinutils 2.44-3 install ok installed libblas3:amd64 libblas3 3.12.1-2 install ok installed libblkid1:amd64 libblkid1 2.41-4 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-1+b2 install ok installed libblosc2-4:amd64 libblosc2-4 2.17.1+ds-1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-7 install ok installed libc-dev-bin libc-dev-bin 2.41-7 install ok installed libc6:amd64 libc6 2.41-7 install ok installed libc6-dev:amd64 libc6-dev 2.41-7 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-6 install ok installed libcc1-0:amd64 libcc1-0 14.2.0-19 install ok installed libclang-cpp19 libclang-cpp19 1:19.1.7-3 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.44-3 install ok installed libctf0:amd64 libctf0 2.44-3 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.13.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.13.0-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libdeflate0:amd64 libdeflate0 1.23-2 install ok installed libdpkg-perl libdpkg-perl 1.22.18 install ok installed libedit2:amd64 libedit2 3.1-20250104-1 install ok installed libexpat1:amd64 libexpat1 2.7.1-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.7.1-1 install ok installed libfakeroot:amd64 libfakeroot 1.37.1.1-1 install ok installed libffi-dev:amd64 libffi-dev 3.4.7-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-4+b4 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.3 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-19 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-7 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.1-1 install ok installed libglib2.0-data libglib2.0-data 2.84.1-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-19 install ok installed libgpg-error-l10n libgpg-error-l10n 1.51-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-4 install ok installed libgpm2:amd64 libgpm2 1.20.7-11+b2 install ok installed libgprofng0:amd64 libgprofng0 2.44-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhts3t64:amd64 libhts3t64 1.21+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.1-2 install ok installed libhwasan0:amd64 libhwasan0 14.2.0-19 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.12.0-1 install ok installed libhwloc15:amd64 libhwloc15 2.12.0-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libisl23:amd64 libisl23 0.27-1 install ok installed libitm1:amd64 libitm1 14.2.0-19 install ok installed libjansson4:amd64 libjansson4 2.14-2+b3 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3.1 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 8.1.3-5 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblapack3:amd64 liblapack3 3.12.1-2 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-4 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed libldap-common libldap-common 2.6.9+dfsg-2 install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed libllvm19:amd64 libllvm19 1:19.1.7-3 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b2 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-7+b1 install ok installed liblsan0:amd64 liblsan0 14.2.0-19 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-3+b1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.3-1 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.3-1 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.3-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-4 install ok installed libmpc3:amd64 libmpc3 1.3.1-1+b3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-1 install ok installed libncurses-dev:amd64 libncurses-dev 6.5+20250216-2 install ok installed libncurses6:amd64 libncurses6 6.5+20250216-2 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.11.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.11.0-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.3-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-3 install ok installed libpfm4:amd64 libpfm4 4.13.0+git99-gc5587f9-1 install ok installed libpipeline1:amd64 libpipeline1 1.5.8-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.47-1.1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.13.3-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.3-1 install ok installed libpython3.13:amd64 libpython3.13 3.13.3-2 install ok installed libpython3.13-dev:amd64 libpython3.13-dev 3.13.3-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.3-2 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.3-2 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b2 install ok installed libquadmath0:amd64 libquadmath0 14.2.0-19 install ok installed libraqm0:amd64 libraqm0 0.10.2-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsframe1:amd64 libsframe1 2.44-3 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-4 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-3 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-19 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtbb12:amd64 libtbb12 2022.1.0-1 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2022.1.0-1 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2022.1.0-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1 install ok installed libtiff6:amd64 libtiff6 4.7.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1 install ok installed libtsan2:amd64 libtsan2 14.2.0-19 install ok installed libubsan1:amd64 libubsan1 14.2.0-19 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41-4 install ok installed libuv1t64:amd64 libuv1t64 1.50.0-2 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxft2:amd64 libxft2 2.3.6-1+b4 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.4 install ok installed libxml2-dev:amd64 libxml2-dev 2.12.7+dfsg+really2.9.14-0.4 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libz3-dev:amd64 libz3-dev 4.13.3-1 install ok installed libzopfli1 libzopfli1 1.0.3-3 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.12.22-1 install ok installed llvm-19 llvm-19 1:19.1.7-3 install ok installed llvm-19-dev llvm-19-dev 1:19.1.7-3 install ok installed llvm-19-linker-tools llvm-19-linker-tools 1:19.1.7-3 install ok installed llvm-19-runtime llvm-19-runtime 1:19.1.7-3 install ok installed llvm-19-tools llvm-19-tools 1:19.1.7-3 install ok installed login login 1:4.16.0-2+really2.41-4 install ok installed login.defs login.defs 1:4.17.4-1 install ok installed make make 4.4.1-2 install ok installed manpages manpages 6.9.1-1 install ok installed manpages-dev manpages-dev 6.9.1-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.41-4 install ok installed ncbi-blast+ ncbi-blast+ 2.16.0+ds-6+b1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed numba-doc numba-doc 0.61.2+dfsg-1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.3-1 install ok installed openssl openssl 3.5.0-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-1 install ok installed patch patch 2.8-1 install ok installed perl perl 5.40.1-3 install ok installed perl-base perl-base 5.40.1-3 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-3 install ok installed publicsuffix publicsuffix 20250328.1952-0.1 install ok installed python-babel-localedata python-babel-localedata 2.17.0-1 install ok installed python-biopython-doc python-biopython-doc 1.85+dfsg-4 install ok installed python-matplotlib-data python-matplotlib-data 3.10.1+dfsg1-2 install ok installed python-odf-doc python-odf-doc 1.4.2-4 install ok installed python-odf-tools python-odf-tools 1.4.2-4 install ok installed python-tables-data python-tables-data 3.10.2-2 install ok installed python3 python3 3.13.3-1 install ok installed python3-attr python3-attr 25.3.0-1 install ok installed python3-babel python3-babel 2.17.0-1 install ok installed python3-biopython python3-biopython 1.85+dfsg-4 install ok installed python3-bottleneck python3-bottleneck 1.4.2+ds1-2+b1 install ok installed python3-brotli python3-brotli 1.1.0-2+b7 install ok installed python3-bs4 python3-bs4 4.13.3-2 install ok installed python3-cairo python3-cairo 1.27.0-2 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.1-1+b1 install ok installed python3-contourpy python3-contourpy 1.3.1-1+b1 install ok installed python3-cpuinfo python3-cpuinfo 9.0.0+git20221119-3 install ok installed python3-cssselect python3-cssselect 1.3.0-1 install ok installed python3-cycler python3-cycler 0.12.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-decorator python3-decorator 5.2.1-1 install ok installed python3-defusedxml python3-defusedxml 0.7.1-3 install ok installed python3-deprecated python3-deprecated 1.2.18-1 install ok installed python3-dev python3-dev 3.13.3-1 install ok installed python3-et-xmlfile python3-et-xmlfile 2.0.0-1 install ok installed python3-fonttools python3-fonttools 4.57.0-1 install ok installed python3-freetype python3-freetype 2.5.1-1 install ok installed python3-fs python3-fs 2.4.16-7 install ok installed python3-html5lib python3-html5lib 1.2-2 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-jinja2 python3-jinja2 3.1.6-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.7-3+b1 install ok installed python3-legacy-cgi python3-legacy-cgi 2.6.3-1 install ok installed python3-llvmlite python3-llvmlite 0.44.0-1 install ok installed python3-lxml:amd64 python3-lxml 5.3.2-1 install ok installed python3-lz4 python3-lz4 4.4.0+dfsg-2 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.10.1+dfsg1-2 install ok installed python3-minimal python3-minimal 3.13.3-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-nanoget python3-nanoget 1.19.3-1 install ok installed python3-nanomath python3-nanomath 1.2.1+ds-1 install ok installed python3-numba python3-numba 0.61.2+dfsg-1 install ok installed python3-numexpr python3-numexpr 2.10.2-1+b2 install ok installed python3-numpy python3-numpy 1:2.2.4+ds-1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.4+ds-1 install ok installed python3-odf python3-odf 1.4.2-4 install ok installed python3-olefile python3-olefile 0.47-1 install ok installed python3-openpyxl python3-openpyxl 3.1.5+dfsg-1 install ok installed python3-packaging python3-packaging 24.2-3 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-9 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-9 install ok installed python3-pil:amd64 python3-pil 11.1.0-5+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 11.1.0-5+b1 install ok installed python3-pip python3-pip 25.0.1+dfsg-1 install ok installed python3-platformdirs python3-platformdirs 4.3.7-1 install ok installed python3-pooch python3-pooch 1.8.2-1 install ok installed python3-pygments python3-pygments 2.18.0+dfsg-2 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pysam python3-pysam 0.23.0+ds-1+b1 install ok installed python3-pytz python3-pytz 2025.2-1 install ok installed python3-reportlab python3-reportlab 4.3.1-1 install ok installed python3-requests python3-requests 2.32.3+dfsg-5 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-scipy python3-scipy 1.15.2-7 install ok installed python3-soupsieve python3-soupsieve 2.6-1 install ok installed python3-sympy python3-sympy 1.13.3-5 install ok installed python3-tables python3-tables 3.10.2-2 install ok installed python3-tables-lib python3-tables-lib 3.10.2-2+b1 install ok installed python3-tk:amd64 python3-tk 3.13.3-1 install ok installed python3-tqdm python3-tqdm 4.67.1-3 install ok installed python3-typing-extensions python3-typing-extensions 4.13.2-1 install ok installed python3-tz python3-tz 2025.2-1 install ok installed python3-ufolib2 python3-ufolib2 0.17.1+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b4 install ok installed python3-urllib3 python3-urllib3 2.3.0-2 install ok installed python3-webencodings python3-webencodings 0.5.1-5 install ok installed python3-wheel python3-wheel 0.46.1-2 install ok installed python3-wrapt python3-wrapt 1.15.0-4+b1 install ok installed python3-yaml python3-yaml 6.0.2-1+b2 install ok installed python3-zopfli python3-zopfli 0.2.3.post1-1+b1 install ok installed python3.13 python3.13 3.13.3-2 install ok installed python3.13-dev python3.13-dev 3.13.3-2 install ok installed python3.13-minimal python3.13-minimal 3.13.3-2 install ok installed python3.13-tk python3.13-tk 3.13.3-2 install ok installed readline-common readline-common 8.2-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sgml-base sgml-base 1.31 install ok installed shared-mime-info shared-mime-info 2.4-5+b2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 3.0.2+dfsg-2 install ok installed sq sq 1.3.1-2 install ok installed sqv sqv 1.3.0-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-8 install ok installed tzdata tzdata 2025b-2 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-4 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+24 install ok installed xdg-user-dirs xdg-user-dirs 0.18-2 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed xz-utils xz-utils 5.8.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 1m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', 'remove', '--allow-remove-essential', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fakeroot', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libclang-cpp19', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpciaccess0:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libzopfli1', 'linux-libc-dev', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'make', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-deprecated', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-html5lib', 'python3-idna', 'python3-jinja2', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-nanomath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-platformdirs', 'python3-pooch', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tqdm', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-wrapt', 'python3-yaml', 'python3-zopfli', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64', 'python3-nanoget'] 1m38.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fakeroot fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu isympy-common isympy3 javascript-common krb5-locales libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan8 libatomic1 libbinutils libblas3 libblosc1 libblosc2-4 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libclang-cpp19 libcom-err2 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdeflate0 libdpkg-perl libedit2 libexpat1 libexpat1-dev libfakeroot libffi-dev libffi8 libfile-fcntllock-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-14-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglib2.0-data libgnutls30t64 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-310 libhts3t64 libhtscodecs2 libhwasan0 libhwloc-plugins libhwloc15 libidn2-0 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-common libldap2 liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libopenjp2-7 libp11-kit0 libpciaccess0 libperl5.40 libpfm4 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsframe1 libsharpyuv0 libsnappy1v5 libssh2-1t64 libstdc++-14-dev libsz2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-dev libxnvctrl0 libxrender1 libxslt1.1 libxss1 libyaml-0-2 libz3-4 libz3-dev libzopfli1 linux-libc-dev llvm-19 llvm-19-dev llvm-19-linker-tools llvm-19-runtime llvm-19-tools make manpages manpages-dev media-types ncbi-blast+ ncbi-data netbase numba-doc ocl-icd-libopencl1 openssl patch perl perl-modules-5.40 publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-attr python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cpuinfo python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-deprecated python3-dev python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-html5lib python3-idna python3-jinja2 python3-kiwisolver python3-legacy-cgi python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-nanoget python3-nanomath python3-numba python3-numexpr python3-numpy python3-numpy-dev python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-platformdirs python3-pooch python3-pygments python3-pyparsing python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tk python3-tqdm python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-webencodings python3-wheel python3-wrapt python3-yaml python3-zopfli python3.13 python3.13-dev python3.13-minimal python3.13-tk readline-common rpcsvc-proto sgml-base shared-mime-info sphinx-rtd-theme-common sq tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zlib1g-dev 0 upgraded, 0 newly installed, 313 to remove and 0 not upgraded. After this operation, 1874 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45659 files and directories currently installed.) Removing binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing build-essential (12.12) ... Removing g++ (4:14.2.0-1) ... Removing gcc (4:14.2.0-1) ... Removing dpkg-dev (1.22.18) ... Removing g++-x86-64-linux-gnu (4:14.2.0-1) ... Removing gcc-x86-64-linux-gnu (4:14.2.0-1) ... Removing python3-nanoget (1.19.3-1) ... Removing python3-biopython (1.85+dfsg-4) ... Removing python3-reportlab (4.3.1-1) ... Removing python3-matplotlib (3.10.1+dfsg1-2) ... Removing python3-pil.imagetk:amd64 (11.1.0-5+b1) ... Removing python3-pil:amd64 (11.1.0-5+b1) ... Removing python3-tk:amd64 (3.13.3-1) ... Removing blt (2.5.3+dfsg-8) ... Removing bzip2 (1.0.8-6) ... Removing python3-pooch (1.8.2-1) ... Removing python3-requests (2.32.3+dfsg-5) ... Removing python3-pip (25.0.1+dfsg-1) ... Removing cpp (4:14.2.0-1) ... Removing cpp-x86-64-linux-gnu (4:14.2.0-1) ... Removing fakeroot (1.37.1.1-1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing tk8.6-blt2.5 (2.5.3+dfsg-8) ... Removing python3.13-tk (3.13.3-2) ... Removing libtk8.6:amd64 (8.6.16-1) ... Removing libxft2:amd64 (2.3.6-1+b4) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.27.0-2) ... Removing libcairo2:amd64 (1.18.4-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-2.3) ... Removing fontconfig-config (2.15.0-2.3) ... Removing python-matplotlib-data (3.10.1+dfsg1-2) ... Removing fonts-dejavu-extra (2.37-8) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing numba-doc (0.61.2+dfsg-1) ... Removing sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing fonts-lyx (2.4.3-1) ... Removing fonts-urw-base35 (20200910-8) ... Removing g++-14 (14.2.0-19) ... Removing g++-14-x86-64-linux-gnu (14.2.0-19) ... Removing isympy3 (1.13.3-5) ... Removing isympy-common (1.13.3-5) ... Removing javascript-common (12) ... Removing krb5-locales (1.21.3-5) ... Removing python3-tables (3.10.2-2) ... Removing python3-tables-lib (3.10.2-2+b1) ... Removing libhdf5-310:amd64 (1.14.5+repack-3) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing libalgorithm-merge-perl (0.08-5) ... Removing libalgorithm-diff-xs-perl (0.04-9) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libstdc++-14-dev:amd64 (14.2.0-19) ... Removing shared-mime-info (2.4-5+b2) ... Removing libraqm0:amd64 (0.10.2-1) ... Removing libharfbuzz0b:amd64 (10.2.0-1+b1) ... Removing libglib2.0-0t64:amd64 (2.84.1-1) ... Removing python3-numba (0.61.2+dfsg-1) ... Removing python3-nanomath (1.2.1+ds-1) ... Removing python3-pandas (2.2.3+dfsg-9) ... Removing python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Removing python3-numexpr (2.10.2-1+b2) ... Removing python3-bottleneck (1.4.2+ds1-2+b1) ... Removing libblosc1:amd64 (1.21.5+ds-1+b2) ... Removing libblosc2-4:amd64 (2.17.1+ds-1) ... Removing xfonts-utils (1:7.7+7) ... Removing python3-freetype (2.5.1-1) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing llvm-19-dev (1:19.1.7-3) ... Removing python3-dev (3.13.3-1) ... Removing python3.13-dev (3.13.3-2) ... Removing libpython3-dev:amd64 (3.13.3-1) ... Removing libpython3.13-dev:amd64 (3.13.3-2) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libncurses-dev:amd64 (6.5+20250216-2) ... Removing libexpat1-dev:amd64 (2.7.1-1) ... Removing libc6-dev:amd64 (2.41-7) ... Removing libc-dev-bin (2.41-7) ... Removing libclang-cpp19 (1:19.1.7-3) ... Removing python3-llvmlite (0.44.0-1) ... Removing python3-pysam (0.23.0+ds-1+b1) ... Removing libhts3t64:amd64 (1.21+ds-1) ... Removing libcurl3t64-gnutls:amd64 (8.13.0-1) ... Removing libcrypt-dev:amd64 (1:4.4.38-1) ... Removing libtiff6:amd64 (4.7.0-3) ... Removing libdeflate0:amd64 (1.23-2) ... Removing libdpkg-perl (1.22.18) ... Removing llvm-19-tools (1:19.1.7-3) ... Removing python3-yaml (6.0.2-1+b2) ... Removing python3-wheel (0.46.1-2) ... Removing python3-tqdm (4.67.1-3) ... Removing libpython3.13:amd64 (3.13.3-2) ... Removing libfakeroot:amd64 (1.37.1.1-1) ... Removing libffi-dev:amd64 (3.4.7-1) ... Removing libfile-fcntllock-perl (0.22-4+b4) ... Removing libfontenc1:amd64 (1:1.1.8-1+b2) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing python3-openpyxl (3.1.5+dfsg-1) ... Removing ncbi-blast+ (2.16.0+ds-6+b1) ... Removing perl (5.40.1-3) ... Removing libperl5.40:amd64 (5.40.1-3) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libglib2.0-data (2.84.1-1) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libgpg-error-l10n (1.51-4) ... Removing libgpm2:amd64 (1.20.7-11+b2) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libhtscodecs2:amd64 (1.6.1-2) ... Removing libhwloc-plugins:amd64 (2.12.0-1) ... Removing libtbb12:amd64 (2022.1.0-1) ... Removing libtbbbind-2-5:amd64 (2022.1.0-1) ... Removing libhwloc15:amd64 (2.12.0-1) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3.1) ... Removing python-biopython-doc (1.85+dfsg-4) ... Removing libjs-sphinxdoc (8.1.3-5) ... Removing python-odf-doc (1.4.2-4) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing libldap-common (2.6.9+dfsg-2) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing liblmdb0:amd64 (0.9.31-1+b2) ... Removing liblocale-gettext-perl (1.07-7+b1) ... Removing liblzo2-2:amd64 (2.10-3+b1) ... Removing libmbedtls21:amd64 (3.6.3-1) ... Removing libmbedx509-7:amd64 (3.6.3-1) ... Removing libmbedcrypto16:amd64 (3.6.3-1) ... Removing libncurses6:amd64 (6.5+20250216-2) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Removing libngtcp2-16:amd64 (1.11.0-1) ... Removing libopenjp2-7:amd64 (2.5.3-2) ... Removing libpciaccess0:amd64 (0.17-3+b3) ... Removing libpipeline1:amd64 (1.5.8-1) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libpng16-16t64:amd64 (1.6.47-1.1) ... Removing libqhull-r8.0:amd64 (2020.2-6+b2) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg1-9) ... Removing libwebpmux3:amd64 (1.5.0-0.1) ... Removing libwebpdemux2:amd64 (1.5.0-0.1) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libsnappy1v5:amd64 (1.2.2-1) ... Removing libtbbmalloc2:amd64 (2022.1.0-1) ... Removing libtcl8.6:amd64 (8.6.16+dfsg-1) ... Removing libuv1t64:amd64 (1.50.0-2) ... Removing libxss1:amd64 (1:1.2.3-1+b3) ... Removing libxrender1:amd64 (1:0.9.12-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxnvctrl0:amd64 (535.171.04-1+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing libz3-dev:amd64 (4.13.3-1) ... Removing linux-libc-dev (6.12.22-1) ... Removing make (4.4.1-2) ... Removing manpages-dev (6.9.1-1) ... Removing manpages (6.9.1-1) ... Removing ncbi-data (6.1.20170106+dfsg2-5) ... Removing ocl-icd-libopencl1:amd64 (2.3.3-1) ... Removing patch (2.8-1) ... Removing perl-modules-5.40 (5.40.1-3) ... Removing publicsuffix (20250328.1952-0.1) ... Removing python3-babel (2.17.0-1) ... Removing python-babel-localedata (2.17.0-1) ... Removing python-odf-tools (1.4.2-4) ... Removing python-tables-data (3.10.2-2) ... Removing python3-bs4 (4.13.3-2) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.1-1+b1) ... Removing python3-contourpy (1.3.1-1+b1) ... Removing python3-cpuinfo (9.0.0+git20221119-3) ... Removing python3-cssselect (1.3.0-1) ... Removing python3-cycler (0.12.1-1) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-odf (1.4.2-4) ... Removing python3-defusedxml (0.7.1-3) ... Removing python3-deprecated (1.2.18-1) ... Removing python3-et-xmlfile (2.0.0-1) ... Removing python3-html5lib (1.2-2) ... Removing python3-idna (3.10-1) ... Removing python3-jinja2 (3.1.6-1) ... Removing python3-kiwisolver (1.4.7-3+b1) ... Removing python3-legacy-cgi (2.6.3-1) ... Removing python3-markupsafe (2.1.5-1+b3) ... Removing python3-olefile (0.47-1) ... Removing python3-packaging (24.2-3) ... Removing python3-pygments (2.18.0+dfsg-2) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-tz (2025.2-1) ... Removing python3-pytz (2025.2-1) ... Removing python3-soupsieve (2.6-1) ... Removing python3-typing-extensions (4.13.2-1) ... Removing python3-urllib3 (2.3.0-2) ... Removing python3-webencodings (0.5.1-5) ... Removing python3-wrapt (1.15.0-4+b1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing sq (1.3.1-2) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.18-2) ... Removing xz-utils (5.8.1-1) ... Removing gcc-14 (14.2.0-19) ... Removing binutils (2.44-3) ... Removing libgprofng0:amd64 (2.44-3) ... Removing gcc-14-x86-64-linux-gnu (14.2.0-19) ... Removing binutils-x86-64-linux-gnu (2.44-3) ... Removing libctf0:amd64 (2.44-3) ... Removing libbinutils:amd64 (2.44-3) ... Removing binutils-common:amd64 (2.44-3) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp-14 (14.2.0-19) ... Removing cpp-14-x86-64-linux-gnu (14.2.0-19) ... Removing libgcc-14-dev:amd64 (14.2.0-19) ... Removing libasan8:amd64 (14.2.0-19) ... Removing libatomic1:amd64 (14.2.0-19) ... Removing llvm-19 (1:19.1.7-3) ... Removing libcurl4t64:amd64 (8.13.0-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libcc1-0:amd64 (14.2.0-19) ... Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-1+b1) ... Removing libctf-nobfd0:amd64 (2.44-3) ... Removing llvm-19-runtime (1:19.1.7-3) ... Removing llvm-19-linker-tools (1:19.1.7-3) ... Removing libllvm19:amd64 (1:19.1.7-3) ... Removing libedit2:amd64 (3.1-20250104-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libgomp1:amd64 (14.2.0-19) ... Removing libhwasan0:amd64 (14.2.0-19) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-2) ... Removing libisl23:amd64 (0.27-1) ... Removing libitm1:amd64 (14.2.0-19) ... Removing libjansson4:amd64 (2.14-2+b3) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-6) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libldap2:amd64 (2.6.9+dfsg-2) ... Removing liblsan0:amd64 (14.2.0-19) ... Removing libmpc3:amd64 (1.3.1-1+b3) ... Removing libmpfr6:amd64 (4.2.2-1) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.8.0-1) ... Removing libpfm4:amd64 (4.13.0+git99-gc5587f9-1) ... Removing libquadmath0:amd64 (14.2.0-19) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Removing libsframe1:amd64 (2.44-3) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libtsan2:amd64 (14.2.0-19) ... Removing libubsan1:amd64 (14.2.0-19) ... Removing libunistring5:amd64 (1.3-2) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libz3-4:amd64 (4.13.3-1) ... Removing openssl (3.5.0-1) ... Removing python3-fonttools (4.57.0-1) ... Removing python3-scipy (1.15.2-7) ... Removing python3-numpy (1:2.2.4+ds-1) ... Removing liblapack3:amd64 (3.12.1-2) ... Removing libblas3:amd64 (3.12.1-2) ... Removing python3-zopfli (0.2.3.post1-1+b1) ... Removing python3-lxml:amd64 (5.3.2-1) ... Removing libxslt1.1:amd64 (1.1.35-1.2) ... Removing libgcrypt20:amd64 (1.11.0-7) ... Removing libgfortran5:amd64 (14.2.0-19) ... Removing libgpg-error0:amd64 (1.51-4) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Removing libzopfli1 (1.0.3-3) ... Removing python3-brotli (1.1.0-2+b7) ... Removing python3-decorator (5.2.1-1) ... Removing python3-fs (2.4.16-7) ... Removing python3-lz4 (4.4.0+dfsg-2) ... Removing python3-sympy (1.13.3-5) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Removing python3-platformdirs (4.3.7-1) ... Removing python3-unicodedata2 (15.1.0+ds-1+b4) ... Removing unicode-data (15.1.0-1) ... Removing python3-ufolib2 (0.17.1+dfsg1-1) ... Removing python3-attr (25.3.0-1) ... Removing python3 (3.13.3-1) ... Removing python3.13 (3.13.3-2) ... Removing python3-minimal (3.13.3-1) ... Removing python3.13-minimal (3.13.3-2) ... Removing libexpat1:amd64 (2.7.1-1) ... Removing libpython3-stdlib:amd64 (3.13.3-1) ... Removing libpython3.13-stdlib:amd64 (3.13.3-2) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.4.7-1) ... Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing libpython3.13-minimal:amd64 (3.13.3-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.2-6) ... Processing triggers for libc-bin (2.41-7) ... 1m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', 'remove', '--allow-remove-essential', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fakeroot', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libclang-cpp19', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpciaccess0:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libzopfli1', 'linux-libc-dev', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'make', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-deprecated', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-html5lib', 'python3-idna', 'python3-jinja2', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-nanomath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-platformdirs', 'python3-pooch', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tqdm', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-wrapt', 'python3-yaml', 'python3-zopfli', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64', 'python3-nanoget'] 1m38.6s INFO: Running scripts post_remove 1m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_remove_exceptions'] 1m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_remove_exceptions'] 1m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg', '--purge', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fakeroot', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libclang-cpp19', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpciaccess0:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libzopfli1', 'linux-libc-dev', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'make', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+', 'ncbi-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-deprecated', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-html5lib', 'python3-idna', 'python3-jinja2', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-nanomath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-platformdirs', 'python3-pooch', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tqdm', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-wrapt', 'python3-yaml', 'python3-zopfli', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64'] 1m38.9s DUMP: (Reading database ... 5028 files and directories currently installed.) Purging configuration files for binfmt-support (2.2.2-7) ... Purging configuration files for binutils (2.44-3) ... Purging configuration files for binutils-common:amd64 (2.44-3) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:14.2.0-1) ... dpkg: warning: ignoring request to remove cpp-14 which isn't installed dpkg: warning: ignoring request to remove cpp-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which isn't installed Purging configuration files for dpkg-dev (1.22.18) ... dpkg: warning: ignoring request to remove fakeroot which isn't installed Purging configuration files for fontconfig-config (2.15.0-2.3) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which isn't installed Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-14 which isn't installed dpkg: warning: ignoring request to remove g++-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-14 which isn't installed dpkg: warning: ignoring request to remove gcc-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove isympy-common which isn't installed dpkg: warning: ignoring request to remove isympy3 which isn't installed Purging configuration files for javascript-common (12) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libblosc2-4 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libclang-cpp19 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed Purging configuration files for libfakeroot:amd64 (1.37.1.1-1) ... dpkg: warning: ignoring request to remove libffi-dev which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgcrypt20 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.84.1-1) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpg-error-l10n which isn't installed dpkg: warning: ignoring request to remove libgpg-error0 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed dpkg: warning: ignoring request to remove libhts3t64 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed Purging configuration files for libldap-common (2.6.9+dfsg-2) ... dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm19 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblocale-gettext-perl which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzo2-2 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncurses-dev which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpfm4 which isn't installed dpkg: warning: ignoring request to remove libpipeline1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.13 which isn't installed dpkg: warning: ignoring request to remove libpython3.13-dev which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.3-2) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.28+dfsg1-9) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtbb12 which isn't installed dpkg: warning: ignoring request to remove libtbbbind-2-5 which isn't installed dpkg: warning: ignoring request to remove libtbbmalloc2 which isn't installed dpkg: warning: ignoring request to 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installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxml2-dev which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove libz3-dev which isn't installed dpkg: warning: ignoring request to remove libzopfli1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove llvm-19 which isn't installed dpkg: warning: ignoring request to remove llvm-19-dev which isn't installed dpkg: warning: ignoring request to remove llvm-19-linker-tools which isn't installed dpkg: warning: ignoring request to remove llvm-19-runtime which isn't installed dpkg: warning: ignoring request to remove llvm-19-tools which isn't installed dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for media-types (13.0.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-5) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove numba-doc which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openssl (3.5.0-1) ... dpkg: warning: ignoring request to remove patch which isn't installed Purging configuration files for perl (5.40.1-3) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed Purging configuration files for python-matplotlib-data (3.10.1+dfsg1-2) ... dpkg: warning: ignoring request to remove python-odf-doc which isn't installed dpkg: warning: ignoring request to remove python-odf-tools which isn't installed dpkg: warning: ignoring request to remove python-tables-data which isn't installed Purging configuration files for python3 (3.13.3-1) ... dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-babel which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-bottleneck which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cpuinfo which isn't installed dpkg: warning: ignoring request to remove python3-cssselect which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-defusedxml which isn't installed dpkg: warning: ignoring request to remove python3-deprecated which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-et-xmlfile which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-legacy-cgi which isn't installed dpkg: warning: ignoring request to remove python3-llvmlite which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-nanomath which isn't installed dpkg: warning: ignoring request to remove python3-numba which isn't installed dpkg: warning: ignoring request to remove python3-numexpr which isn't installed Purging configuration files for python3-numpy (1:2.2.4+ds-1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-odf which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-openpyxl which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pip which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-pooch which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed Purging configuration files for python3-sympy (1.13.3-5) ... dpkg: warning: ignoring request to remove python3-tables which isn't installed dpkg: warning: ignoring request to remove python3-tables-lib which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-wheel which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zopfli which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed dpkg: warning: ignoring request to remove python3.13-dev which isn't installed Purging configuration files for python3.13-minimal (3.13.3-2) ... dpkg: warning: ignoring request to remove python3.13-tk which isn't installed Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for sgml-base (1.31) ... Purging configuration files for shared-mime-info (2.4-5+b2) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove sq which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+24) ... Purging configuration files for xdg-user-dirs (0.18-2) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg', '--purge', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fakeroot', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-4:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libclang-cpp19', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error-l10n', 'libgpg-error0:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-common', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpciaccess0:amd64', 'libperl5.40:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-dev:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'libzopfli1', 'linux-libc-dev', 'llvm-19', 'llvm-19-dev', 'llvm-19-linker-tools', 'llvm-19-runtime', 'llvm-19-tools', 'make', 'manpages', 'manpages-dev', 'media-types', 'ncbi-blast+', 'ncbi-data', 'netbase', 'numba-doc', 'ocl-icd-libopencl1:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cpuinfo', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-deprecated', 'python3-dev', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-html5lib', 'python3-idna', 'python3-jinja2', 'python3-kiwisolver', 'python3-legacy-cgi', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-nanomath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-platformdirs', 'python3-pooch', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tqdm', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-webencodings', 'python3-wheel', 'python3-wrapt', 'python3-yaml', 'python3-zopfli', 'python3.13', 'python3.13-dev', 'python3.13-minimal', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'sq', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64'] 1m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg', '--purge', 'python3-nanoget'] 1m38.9s DUMP: dpkg: warning: ignoring request to remove python3-nanoget which isn't installed 1m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg', '--purge', 'python3-nanoget'] 1m38.9s INFO: Running scripts post_purge 1m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_purge_exceptions'] 1m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_purge_exceptions'] 1m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg', '--purge', '--pending'] 1m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg', '--purge', '--pending'] 1m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg', '--remove', '--pending'] 1m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg', '--remove', '--pending'] 1m38.9s INFO: Running scripts post_test 1m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_test_exceptions'] 1m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'tmp/scripts/post_test_exceptions'] 1m38.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 1m39.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 1m39.3s DEBUG: No broken symlinks as far as we can find. 1m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg-divert', '--list'] 1m39.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'dpkg-divert', '--list'] 1m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', 'clean'] 1m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx', 'apt-get', 'clean'] 1m39.4s DEBUG: Recording chroot state 1m39.8s INFO: PASS: Installation and purging test. 1m40.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/shm'] 1m40.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/shm'] 1m40.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/console'] 1m40.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/console'] 1m40.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/ptmx'] 1m40.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/ptmx'] 1m40.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/pts'] 1m40.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/dev/pts'] 1m40.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/proc'] 1m40.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx/proc'] 1m40.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 1m40.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg68b4gnx'] 1m40.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpg68b4gnx 1m40.2s INFO: PASS: All tests. 1m40.2s INFO: piuparts run ends. ret=0 End: 2025-04-14 14:46:19 GMT